Multiple sequence alignment - TraesCS7B01G286000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G286000 chr7B 100.000 3777 0 0 1 3777 521152190 521148414 0.000000e+00 6975.0
1 TraesCS7B01G286000 chr7B 91.481 2418 121 47 625 2984 521198210 521195820 0.000000e+00 3245.0
2 TraesCS7B01G286000 chr7B 90.049 1427 89 27 1571 2980 522142075 522143465 0.000000e+00 1799.0
3 TraesCS7B01G286000 chr7B 89.458 683 37 20 684 1337 522141247 522141923 0.000000e+00 830.0
4 TraesCS7B01G286000 chr7B 89.540 239 17 1 3236 3466 521195279 521195041 2.850000e-76 296.0
5 TraesCS7B01G286000 chr7B 87.571 177 20 2 3048 3224 521195686 521195512 1.780000e-48 204.0
6 TraesCS7B01G286000 chr7B 97.849 93 2 0 1 93 544874962 544875054 1.090000e-35 161.0
7 TraesCS7B01G286000 chr7B 86.923 130 12 3 3028 3156 726616280 726616405 1.410000e-29 141.0
8 TraesCS7B01G286000 chr7B 85.496 131 15 4 3028 3156 72052437 72052309 2.370000e-27 134.0
9 TraesCS7B01G286000 chr7B 83.333 120 16 3 3028 3145 5054465 5054348 1.430000e-19 108.0
10 TraesCS7B01G286000 chr7A 94.851 2389 92 12 651 3023 558110858 558108485 0.000000e+00 3701.0
11 TraesCS7B01G286000 chr7A 91.494 1399 96 18 1569 2955 559361783 559363170 0.000000e+00 1903.0
12 TraesCS7B01G286000 chr7A 92.605 933 59 5 1493 2416 559386779 559387710 0.000000e+00 1332.0
13 TraesCS7B01G286000 chr7A 85.563 755 61 31 684 1415 559361022 559361751 0.000000e+00 747.0
14 TraesCS7B01G286000 chr7A 85.864 382 49 2 3400 3777 558108019 558107639 5.880000e-108 401.0
15 TraesCS7B01G286000 chr7A 79.320 353 47 13 998 1327 559385842 559386191 1.370000e-54 224.0
16 TraesCS7B01G286000 chr7A 97.849 93 2 0 1 93 155160385 155160477 1.090000e-35 161.0
17 TraesCS7B01G286000 chr7A 97.849 93 2 0 1 93 421788441 421788349 1.090000e-35 161.0
18 TraesCS7B01G286000 chr7D 94.574 1548 55 7 1526 3067 491873420 491871896 0.000000e+00 2366.0
19 TraesCS7B01G286000 chr7D 91.286 1400 101 18 1568 2955 493203682 493205072 0.000000e+00 1890.0
20 TraesCS7B01G286000 chr7D 88.722 1463 122 31 1530 2980 493560511 493561942 0.000000e+00 1748.0
21 TraesCS7B01G286000 chr7D 85.239 691 49 25 684 1337 493202856 493203530 0.000000e+00 662.0
22 TraesCS7B01G286000 chr7D 93.862 391 19 3 945 1334 491874027 491873641 5.440000e-163 584.0
23 TraesCS7B01G286000 chr7D 87.692 455 52 1 3323 3773 491871255 491870801 9.290000e-146 527.0
24 TraesCS7B01G286000 chr7D 93.713 334 15 2 620 948 491877642 491877310 2.620000e-136 496.0
25 TraesCS7B01G286000 chr7D 95.506 267 8 3 90 352 101582739 101583005 1.250000e-114 424.0
26 TraesCS7B01G286000 chr7D 95.833 264 8 2 90 350 445784703 445784966 1.250000e-114 424.0
27 TraesCS7B01G286000 chr7D 75.953 682 85 43 694 1327 493559509 493560159 1.030000e-70 278.0
28 TraesCS7B01G286000 chr7D 86.429 140 17 2 3028 3166 575901819 575901957 6.530000e-33 152.0
29 TraesCS7B01G286000 chr7D 92.063 63 5 0 3162 3224 491871810 491871748 5.200000e-14 89.8
30 TraesCS7B01G286000 chr6A 82.360 822 136 7 1592 2410 564975151 564975966 0.000000e+00 706.0
31 TraesCS7B01G286000 chr6A 92.391 276 21 0 345 620 258377084 258377359 9.830000e-106 394.0
32 TraesCS7B01G286000 chr6A 92.000 275 22 0 345 619 371731968 371732242 1.650000e-103 387.0
33 TraesCS7B01G286000 chr6A 97.849 93 2 0 1 93 258376996 258377088 1.090000e-35 161.0
34 TraesCS7B01G286000 chr6A 97.849 93 2 0 1 93 371731880 371731972 1.090000e-35 161.0
35 TraesCS7B01G286000 chrUn 96.198 263 8 2 87 347 68758076 68758338 2.700000e-116 429.0
36 TraesCS7B01G286000 chrUn 94.545 275 10 4 79 348 108799224 108799498 1.620000e-113 420.0
37 TraesCS7B01G286000 chrUn 91.259 286 24 1 345 629 363591243 363590958 4.580000e-104 388.0
38 TraesCS7B01G286000 chr6D 95.221 272 10 2 86 354 256101887 256102158 9.700000e-116 427.0
39 TraesCS7B01G286000 chr6D 95.506 267 9 2 89 353 160794030 160793765 1.250000e-114 424.0
40 TraesCS7B01G286000 chr6D 90.323 93 4 3 3074 3166 308934652 308934739 2.380000e-22 117.0
41 TraesCS7B01G286000 chr4B 94.585 277 13 1 345 619 207116341 207116065 9.700000e-116 427.0
42 TraesCS7B01G286000 chr4B 100.000 93 0 0 1 93 207116429 207116337 5.020000e-39 172.0
43 TraesCS7B01G286000 chr3D 95.221 272 10 2 86 354 83428532 83428803 9.700000e-116 427.0
44 TraesCS7B01G286000 chr3A 95.556 270 7 3 90 354 161457422 161457153 9.700000e-116 427.0
45 TraesCS7B01G286000 chr4D 95.817 263 9 2 90 350 414149757 414150019 1.250000e-114 424.0
46 TraesCS7B01G286000 chr4D 83.206 131 20 2 1187 1316 455693547 455693676 6.630000e-23 119.0
47 TraesCS7B01G286000 chr5D 92.553 282 17 3 345 622 419804349 419804068 5.880000e-108 401.0
48 TraesCS7B01G286000 chr2A 92.058 277 22 0 345 621 161514588 161514864 1.270000e-104 390.0
49 TraesCS7B01G286000 chr2A 86.047 86 12 0 3072 3157 761906132 761906217 4.020000e-15 93.5
50 TraesCS7B01G286000 chr3B 91.259 286 24 1 345 629 806175416 806175701 4.580000e-104 388.0
51 TraesCS7B01G286000 chr1B 92.308 273 21 0 345 617 305311844 305312116 4.580000e-104 388.0
52 TraesCS7B01G286000 chr1B 92.000 275 22 0 345 619 6527907 6528181 1.650000e-103 387.0
53 TraesCS7B01G286000 chr1B 97.849 93 2 0 1 93 6527819 6527911 1.090000e-35 161.0
54 TraesCS7B01G286000 chr1B 97.849 93 2 0 1 93 305311756 305311848 1.090000e-35 161.0
55 TraesCS7B01G286000 chr6B 97.849 93 2 0 1 93 52213317 52213225 1.090000e-35 161.0
56 TraesCS7B01G286000 chr1A 87.156 109 12 2 3054 3161 258745168 258745061 5.120000e-24 122.0
57 TraesCS7B01G286000 chr5A 87.879 99 8 4 3055 3151 473361748 473361652 3.080000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G286000 chr7B 521148414 521152190 3776 True 6975.000000 6975 100.000000 1 3777 1 chr7B.!!$R3 3776
1 TraesCS7B01G286000 chr7B 522141247 522143465 2218 False 1314.500000 1799 89.753500 684 2980 2 chr7B.!!$F3 2296
2 TraesCS7B01G286000 chr7B 521195041 521198210 3169 True 1248.333333 3245 89.530667 625 3466 3 chr7B.!!$R4 2841
3 TraesCS7B01G286000 chr7A 558107639 558110858 3219 True 2051.000000 3701 90.357500 651 3777 2 chr7A.!!$R2 3126
4 TraesCS7B01G286000 chr7A 559361022 559363170 2148 False 1325.000000 1903 88.528500 684 2955 2 chr7A.!!$F2 2271
5 TraesCS7B01G286000 chr7A 559385842 559387710 1868 False 778.000000 1332 85.962500 998 2416 2 chr7A.!!$F3 1418
6 TraesCS7B01G286000 chr7D 493202856 493205072 2216 False 1276.000000 1890 88.262500 684 2955 2 chr7D.!!$F4 2271
7 TraesCS7B01G286000 chr7D 493559509 493561942 2433 False 1013.000000 1748 82.337500 694 2980 2 chr7D.!!$F5 2286
8 TraesCS7B01G286000 chr7D 491870801 491877642 6841 True 812.560000 2366 92.380800 620 3773 5 chr7D.!!$R1 3153
9 TraesCS7B01G286000 chr6A 564975151 564975966 815 False 706.000000 706 82.360000 1592 2410 1 chr6A.!!$F1 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 661 0.325602 AAATCGTTCGCTAACCCCCA 59.674 50.0 0.0 0.0 31.46 4.96 F
1500 5345 0.445436 CGACAGCAACCAGAAGCATC 59.555 55.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2552 6469 1.021390 CCGTTGCGCTTCCTGATCTT 61.021 55.0 9.73 0.0 0.00 2.40 R
3490 8183 0.101759 GTATCGTGCTGCCCGAGTAA 59.898 55.0 13.35 0.0 37.81 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.547753 TTCTAAGATTAGGTATCAATTGCTCAC 57.452 33.333 0.00 0.00 35.59 3.51
53 54 8.704668 TCTAAGATTAGGTATCAATTGCTCACA 58.295 33.333 0.00 0.00 35.59 3.58
54 55 7.559590 AAGATTAGGTATCAATTGCTCACAC 57.440 36.000 0.00 0.00 35.59 3.82
55 56 6.058183 AGATTAGGTATCAATTGCTCACACC 58.942 40.000 0.00 3.43 35.59 4.16
56 57 3.719268 AGGTATCAATTGCTCACACCA 57.281 42.857 0.00 0.00 0.00 4.17
57 58 4.240881 AGGTATCAATTGCTCACACCAT 57.759 40.909 0.00 0.00 0.00 3.55
58 59 3.949754 AGGTATCAATTGCTCACACCATG 59.050 43.478 0.00 0.00 0.00 3.66
59 60 3.947196 GGTATCAATTGCTCACACCATGA 59.053 43.478 0.00 0.00 35.45 3.07
60 61 4.581824 GGTATCAATTGCTCACACCATGAT 59.418 41.667 0.00 0.00 36.48 2.45
61 62 5.764686 GGTATCAATTGCTCACACCATGATA 59.235 40.000 0.00 0.00 36.48 2.15
62 63 6.432162 GGTATCAATTGCTCACACCATGATAT 59.568 38.462 0.00 0.00 36.48 1.63
63 64 6.971726 ATCAATTGCTCACACCATGATATT 57.028 33.333 0.00 0.00 36.48 1.28
64 65 9.002600 GTATCAATTGCTCACACCATGATATTA 57.997 33.333 0.00 0.00 36.48 0.98
65 66 7.878547 TCAATTGCTCACACCATGATATTAA 57.121 32.000 0.00 0.00 36.48 1.40
66 67 7.933396 TCAATTGCTCACACCATGATATTAAG 58.067 34.615 0.00 0.00 36.48 1.85
67 68 7.774625 TCAATTGCTCACACCATGATATTAAGA 59.225 33.333 0.00 0.00 36.48 2.10
68 69 6.925610 TTGCTCACACCATGATATTAAGAC 57.074 37.500 0.00 0.00 36.48 3.01
69 70 5.368145 TGCTCACACCATGATATTAAGACC 58.632 41.667 0.00 0.00 36.48 3.85
70 71 5.104569 TGCTCACACCATGATATTAAGACCA 60.105 40.000 0.00 0.00 36.48 4.02
71 72 5.822519 GCTCACACCATGATATTAAGACCAA 59.177 40.000 0.00 0.00 36.48 3.67
72 73 6.318648 GCTCACACCATGATATTAAGACCAAA 59.681 38.462 0.00 0.00 36.48 3.28
73 74 7.467811 GCTCACACCATGATATTAAGACCAAAG 60.468 40.741 0.00 0.00 36.48 2.77
74 75 6.828273 TCACACCATGATATTAAGACCAAAGG 59.172 38.462 0.00 0.00 29.99 3.11
75 76 6.828273 CACACCATGATATTAAGACCAAAGGA 59.172 38.462 0.00 0.00 0.00 3.36
76 77 7.503566 CACACCATGATATTAAGACCAAAGGAT 59.496 37.037 0.00 0.00 0.00 3.24
77 78 8.061304 ACACCATGATATTAAGACCAAAGGATT 58.939 33.333 0.00 0.00 0.00 3.01
78 79 8.355169 CACCATGATATTAAGACCAAAGGATTG 58.645 37.037 0.00 0.00 36.25 2.67
79 80 7.014615 ACCATGATATTAAGACCAAAGGATTGC 59.985 37.037 0.00 0.00 35.10 3.56
80 81 7.014518 CCATGATATTAAGACCAAAGGATTGCA 59.985 37.037 0.00 0.00 35.10 4.08
81 82 8.582437 CATGATATTAAGACCAAAGGATTGCAT 58.418 33.333 0.00 0.00 35.10 3.96
82 83 8.169977 TGATATTAAGACCAAAGGATTGCATC 57.830 34.615 0.00 0.00 35.10 3.91
83 84 8.000709 TGATATTAAGACCAAAGGATTGCATCT 58.999 33.333 0.00 0.00 34.01 2.90
84 85 6.705863 ATTAAGACCAAAGGATTGCATCTC 57.294 37.500 0.00 0.00 32.40 2.75
85 86 3.010200 AGACCAAAGGATTGCATCTCC 57.990 47.619 7.58 7.58 35.10 3.71
86 87 2.309755 AGACCAAAGGATTGCATCTCCA 59.690 45.455 15.95 0.00 35.08 3.86
87 88 3.053095 AGACCAAAGGATTGCATCTCCAT 60.053 43.478 15.95 3.64 35.08 3.41
88 89 3.028850 ACCAAAGGATTGCATCTCCATG 58.971 45.455 15.95 13.51 35.08 3.66
89 90 3.028850 CCAAAGGATTGCATCTCCATGT 58.971 45.455 15.95 1.18 35.08 3.21
90 91 4.209538 CCAAAGGATTGCATCTCCATGTA 58.790 43.478 15.95 0.00 35.08 2.29
91 92 4.037208 CCAAAGGATTGCATCTCCATGTAC 59.963 45.833 15.95 0.00 35.08 2.90
92 93 4.785346 AAGGATTGCATCTCCATGTACT 57.215 40.909 15.95 0.00 35.08 2.73
93 94 4.348863 AGGATTGCATCTCCATGTACTC 57.651 45.455 15.95 0.00 35.08 2.59
94 95 3.072184 AGGATTGCATCTCCATGTACTCC 59.928 47.826 15.95 2.45 41.86 3.85
95 96 3.406764 GATTGCATCTCCATGTACTCCC 58.593 50.000 0.00 0.00 31.86 4.30
96 97 2.180946 TGCATCTCCATGTACTCCCT 57.819 50.000 0.00 0.00 31.86 4.20
97 98 2.042464 TGCATCTCCATGTACTCCCTC 58.958 52.381 0.00 0.00 31.86 4.30
98 99 1.346068 GCATCTCCATGTACTCCCTCC 59.654 57.143 0.00 0.00 31.86 4.30
99 100 1.615883 CATCTCCATGTACTCCCTCCG 59.384 57.143 0.00 0.00 0.00 4.63
100 101 0.629596 TCTCCATGTACTCCCTCCGT 59.370 55.000 0.00 0.00 0.00 4.69
101 102 1.006758 TCTCCATGTACTCCCTCCGTT 59.993 52.381 0.00 0.00 0.00 4.44
102 103 1.831736 CTCCATGTACTCCCTCCGTTT 59.168 52.381 0.00 0.00 0.00 3.60
103 104 1.829222 TCCATGTACTCCCTCCGTTTC 59.171 52.381 0.00 0.00 0.00 2.78
104 105 1.831736 CCATGTACTCCCTCCGTTTCT 59.168 52.381 0.00 0.00 0.00 2.52
105 106 2.236395 CCATGTACTCCCTCCGTTTCTT 59.764 50.000 0.00 0.00 0.00 2.52
106 107 3.307480 CCATGTACTCCCTCCGTTTCTTT 60.307 47.826 0.00 0.00 0.00 2.52
107 108 4.324267 CATGTACTCCCTCCGTTTCTTTT 58.676 43.478 0.00 0.00 0.00 2.27
108 109 4.426736 TGTACTCCCTCCGTTTCTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
109 110 5.549742 TGTACTCCCTCCGTTTCTTTTTA 57.450 39.130 0.00 0.00 0.00 1.52
110 111 5.544650 TGTACTCCCTCCGTTTCTTTTTAG 58.455 41.667 0.00 0.00 0.00 1.85
111 112 4.701651 ACTCCCTCCGTTTCTTTTTAGT 57.298 40.909 0.00 0.00 0.00 2.24
112 113 5.045012 ACTCCCTCCGTTTCTTTTTAGTT 57.955 39.130 0.00 0.00 0.00 2.24
113 114 5.061853 ACTCCCTCCGTTTCTTTTTAGTTC 58.938 41.667 0.00 0.00 0.00 3.01
114 115 4.060205 TCCCTCCGTTTCTTTTTAGTTCG 58.940 43.478 0.00 0.00 0.00 3.95
115 116 3.364664 CCCTCCGTTTCTTTTTAGTTCGC 60.365 47.826 0.00 0.00 0.00 4.70
116 117 3.249080 CCTCCGTTTCTTTTTAGTTCGCA 59.751 43.478 0.00 0.00 0.00 5.10
117 118 4.083484 CCTCCGTTTCTTTTTAGTTCGCAT 60.083 41.667 0.00 0.00 0.00 4.73
118 119 5.121142 CCTCCGTTTCTTTTTAGTTCGCATA 59.879 40.000 0.00 0.00 0.00 3.14
119 120 6.183360 CCTCCGTTTCTTTTTAGTTCGCATAT 60.183 38.462 0.00 0.00 0.00 1.78
120 121 7.010738 CCTCCGTTTCTTTTTAGTTCGCATATA 59.989 37.037 0.00 0.00 0.00 0.86
121 122 8.254178 TCCGTTTCTTTTTAGTTCGCATATAA 57.746 30.769 0.00 0.00 0.00 0.98
122 123 8.385111 TCCGTTTCTTTTTAGTTCGCATATAAG 58.615 33.333 0.00 0.00 0.00 1.73
123 124 7.638683 CCGTTTCTTTTTAGTTCGCATATAAGG 59.361 37.037 0.00 0.00 0.00 2.69
124 125 8.173130 CGTTTCTTTTTAGTTCGCATATAAGGT 58.827 33.333 0.00 0.00 0.00 3.50
125 126 9.836076 GTTTCTTTTTAGTTCGCATATAAGGTT 57.164 29.630 0.00 0.00 0.00 3.50
131 132 9.656040 TTTTAGTTCGCATATAAGGTTTAGTCA 57.344 29.630 0.00 0.00 0.00 3.41
132 133 9.656040 TTTAGTTCGCATATAAGGTTTAGTCAA 57.344 29.630 0.00 0.00 0.00 3.18
133 134 9.656040 TTAGTTCGCATATAAGGTTTAGTCAAA 57.344 29.630 0.00 0.00 0.00 2.69
134 135 8.197988 AGTTCGCATATAAGGTTTAGTCAAAG 57.802 34.615 0.00 0.00 0.00 2.77
135 136 7.822822 AGTTCGCATATAAGGTTTAGTCAAAGT 59.177 33.333 0.00 0.00 0.00 2.66
136 137 7.766219 TCGCATATAAGGTTTAGTCAAAGTC 57.234 36.000 0.00 0.00 0.00 3.01
137 138 7.324935 TCGCATATAAGGTTTAGTCAAAGTCA 58.675 34.615 0.00 0.00 0.00 3.41
138 139 7.820386 TCGCATATAAGGTTTAGTCAAAGTCAA 59.180 33.333 0.00 0.00 0.00 3.18
139 140 8.612619 CGCATATAAGGTTTAGTCAAAGTCAAT 58.387 33.333 0.00 0.00 0.00 2.57
140 141 9.937175 GCATATAAGGTTTAGTCAAAGTCAATC 57.063 33.333 0.00 0.00 0.00 2.67
215 216 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
216 217 9.304335 TGAAATCAATATTATCAGATGCACCAT 57.696 29.630 0.00 0.00 0.00 3.55
217 218 9.569167 GAAATCAATATTATCAGATGCACCATG 57.431 33.333 0.00 0.00 0.00 3.66
218 219 8.873186 AATCAATATTATCAGATGCACCATGA 57.127 30.769 0.00 0.00 0.00 3.07
219 220 8.873186 ATCAATATTATCAGATGCACCATGAA 57.127 30.769 0.00 0.00 0.00 2.57
220 221 8.694581 TCAATATTATCAGATGCACCATGAAA 57.305 30.769 0.00 0.00 0.00 2.69
221 222 8.570488 TCAATATTATCAGATGCACCATGAAAC 58.430 33.333 0.00 0.00 0.00 2.78
222 223 4.880886 TTATCAGATGCACCATGAAACG 57.119 40.909 0.00 0.00 0.00 3.60
223 224 2.183478 TCAGATGCACCATGAAACGT 57.817 45.000 0.00 0.00 0.00 3.99
224 225 3.326836 TCAGATGCACCATGAAACGTA 57.673 42.857 0.00 0.00 0.00 3.57
225 226 3.872696 TCAGATGCACCATGAAACGTAT 58.127 40.909 0.00 0.00 0.00 3.06
226 227 4.260985 TCAGATGCACCATGAAACGTATT 58.739 39.130 0.00 0.00 0.00 1.89
227 228 4.699735 TCAGATGCACCATGAAACGTATTT 59.300 37.500 0.00 0.00 0.00 1.40
228 229 5.182950 TCAGATGCACCATGAAACGTATTTT 59.817 36.000 0.00 0.00 0.00 1.82
229 230 5.512788 CAGATGCACCATGAAACGTATTTTC 59.487 40.000 0.00 0.00 43.63 2.29
300 301 8.840833 AAATTTGGTCAAACTTTGTGTAGTTT 57.159 26.923 1.44 0.00 46.42 2.66
310 311 6.190954 ACTTTGTGTAGTTTGACTTTGTCC 57.809 37.500 0.00 0.00 0.00 4.02
311 312 5.708230 ACTTTGTGTAGTTTGACTTTGTCCA 59.292 36.000 0.00 0.00 0.00 4.02
312 313 6.207810 ACTTTGTGTAGTTTGACTTTGTCCAA 59.792 34.615 0.00 0.00 0.00 3.53
313 314 6.576662 TTGTGTAGTTTGACTTTGTCCAAA 57.423 33.333 0.00 0.00 0.00 3.28
314 315 6.767524 TGTGTAGTTTGACTTTGTCCAAAT 57.232 33.333 0.00 0.00 0.00 2.32
315 316 6.791303 TGTGTAGTTTGACTTTGTCCAAATC 58.209 36.000 0.00 0.00 0.00 2.17
316 317 6.601613 TGTGTAGTTTGACTTTGTCCAAATCT 59.398 34.615 0.00 0.00 0.00 2.40
317 318 7.122055 TGTGTAGTTTGACTTTGTCCAAATCTT 59.878 33.333 0.00 0.00 0.00 2.40
318 319 8.617809 GTGTAGTTTGACTTTGTCCAAATCTTA 58.382 33.333 0.00 0.00 0.00 2.10
319 320 9.349713 TGTAGTTTGACTTTGTCCAAATCTTAT 57.650 29.630 0.00 0.00 0.00 1.73
323 324 9.076596 GTTTGACTTTGTCCAAATCTTATATGC 57.923 33.333 0.00 0.00 0.00 3.14
324 325 7.015226 TGACTTTGTCCAAATCTTATATGCG 57.985 36.000 0.00 0.00 0.00 4.73
325 326 6.038161 TGACTTTGTCCAAATCTTATATGCGG 59.962 38.462 0.00 0.00 0.00 5.69
326 327 6.119536 ACTTTGTCCAAATCTTATATGCGGA 58.880 36.000 0.00 0.00 0.00 5.54
327 328 6.260936 ACTTTGTCCAAATCTTATATGCGGAG 59.739 38.462 0.00 0.00 0.00 4.63
328 329 5.290493 TGTCCAAATCTTATATGCGGAGT 57.710 39.130 0.00 0.00 0.00 3.85
329 330 6.413783 TGTCCAAATCTTATATGCGGAGTA 57.586 37.500 0.00 0.00 0.00 2.59
330 331 6.822442 TGTCCAAATCTTATATGCGGAGTAA 58.178 36.000 0.00 0.00 0.00 2.24
331 332 7.276658 TGTCCAAATCTTATATGCGGAGTAAA 58.723 34.615 0.00 0.00 0.00 2.01
332 333 7.771361 TGTCCAAATCTTATATGCGGAGTAAAA 59.229 33.333 0.00 0.00 0.00 1.52
333 334 8.617809 GTCCAAATCTTATATGCGGAGTAAAAA 58.382 33.333 0.00 0.00 0.00 1.94
353 354 4.961438 AAAACGGAGGGAGTACTAAACA 57.039 40.909 0.00 0.00 0.00 2.83
354 355 3.949842 AACGGAGGGAGTACTAAACAC 57.050 47.619 0.00 0.00 0.00 3.32
355 356 1.815003 ACGGAGGGAGTACTAAACACG 59.185 52.381 0.00 1.11 0.00 4.49
356 357 1.133790 CGGAGGGAGTACTAAACACGG 59.866 57.143 0.00 0.00 0.00 4.94
357 358 1.134877 GGAGGGAGTACTAAACACGGC 60.135 57.143 0.00 0.00 0.00 5.68
358 359 0.529378 AGGGAGTACTAAACACGGCG 59.471 55.000 4.80 4.80 0.00 6.46
359 360 1.080435 GGGAGTACTAAACACGGCGC 61.080 60.000 6.90 0.00 0.00 6.53
360 361 0.388907 GGAGTACTAAACACGGCGCA 60.389 55.000 10.83 0.00 0.00 6.09
361 362 1.421382 GAGTACTAAACACGGCGCAA 58.579 50.000 10.83 0.00 0.00 4.85
362 363 1.389106 GAGTACTAAACACGGCGCAAG 59.611 52.381 10.83 4.90 43.44 4.01
363 364 0.441145 GTACTAAACACGGCGCAAGG 59.559 55.000 10.83 0.00 38.28 3.61
373 374 2.579201 GCGCAAGGCTACTCTCCA 59.421 61.111 0.30 0.00 39.11 3.86
374 375 1.079127 GCGCAAGGCTACTCTCCAA 60.079 57.895 0.30 0.00 39.11 3.53
375 376 0.462759 GCGCAAGGCTACTCTCCAAT 60.463 55.000 0.30 0.00 39.11 3.16
376 377 1.576356 CGCAAGGCTACTCTCCAATC 58.424 55.000 0.00 0.00 0.00 2.67
377 378 1.576356 GCAAGGCTACTCTCCAATCG 58.424 55.000 0.00 0.00 0.00 3.34
378 379 1.134670 GCAAGGCTACTCTCCAATCGT 60.135 52.381 0.00 0.00 0.00 3.73
379 380 2.100916 GCAAGGCTACTCTCCAATCGTA 59.899 50.000 0.00 0.00 0.00 3.43
380 381 3.430374 GCAAGGCTACTCTCCAATCGTAA 60.430 47.826 0.00 0.00 0.00 3.18
381 382 4.113354 CAAGGCTACTCTCCAATCGTAAC 58.887 47.826 0.00 0.00 0.00 2.50
382 383 2.694109 AGGCTACTCTCCAATCGTAACC 59.306 50.000 0.00 0.00 0.00 2.85
383 384 2.429610 GGCTACTCTCCAATCGTAACCA 59.570 50.000 0.00 0.00 0.00 3.67
384 385 3.445857 GCTACTCTCCAATCGTAACCAC 58.554 50.000 0.00 0.00 0.00 4.16
385 386 3.119245 GCTACTCTCCAATCGTAACCACA 60.119 47.826 0.00 0.00 0.00 4.17
386 387 3.314541 ACTCTCCAATCGTAACCACAC 57.685 47.619 0.00 0.00 0.00 3.82
387 388 2.897969 ACTCTCCAATCGTAACCACACT 59.102 45.455 0.00 0.00 0.00 3.55
388 389 3.323979 ACTCTCCAATCGTAACCACACTT 59.676 43.478 0.00 0.00 0.00 3.16
389 390 4.202326 ACTCTCCAATCGTAACCACACTTT 60.202 41.667 0.00 0.00 0.00 2.66
390 391 4.710324 TCTCCAATCGTAACCACACTTTT 58.290 39.130 0.00 0.00 0.00 2.27
391 392 5.127491 TCTCCAATCGTAACCACACTTTTT 58.873 37.500 0.00 0.00 0.00 1.94
416 417 9.681062 TTTATCTTTTACAGCCTATTAAGCACT 57.319 29.630 0.00 0.00 0.00 4.40
417 418 7.793927 ATCTTTTACAGCCTATTAAGCACTC 57.206 36.000 0.00 0.00 0.00 3.51
418 419 5.810587 TCTTTTACAGCCTATTAAGCACTCG 59.189 40.000 0.00 0.00 0.00 4.18
419 420 2.604046 ACAGCCTATTAAGCACTCGG 57.396 50.000 0.00 0.00 0.00 4.63
420 421 1.831736 ACAGCCTATTAAGCACTCGGT 59.168 47.619 0.00 0.00 0.00 4.69
421 422 3.028850 ACAGCCTATTAAGCACTCGGTA 58.971 45.455 0.00 0.00 0.00 4.02
422 423 3.641906 ACAGCCTATTAAGCACTCGGTAT 59.358 43.478 0.00 0.00 0.00 2.73
423 424 4.101119 ACAGCCTATTAAGCACTCGGTATT 59.899 41.667 0.00 0.00 0.00 1.89
424 425 5.303589 ACAGCCTATTAAGCACTCGGTATTA 59.696 40.000 0.00 0.00 0.00 0.98
425 426 6.183360 ACAGCCTATTAAGCACTCGGTATTAA 60.183 38.462 0.00 0.00 0.00 1.40
426 427 6.704493 CAGCCTATTAAGCACTCGGTATTAAA 59.296 38.462 0.00 0.00 0.00 1.52
427 428 6.704937 AGCCTATTAAGCACTCGGTATTAAAC 59.295 38.462 0.00 0.00 0.00 2.01
428 429 6.480981 GCCTATTAAGCACTCGGTATTAAACA 59.519 38.462 0.00 0.00 0.00 2.83
429 430 7.011669 GCCTATTAAGCACTCGGTATTAAACAA 59.988 37.037 0.00 0.00 0.00 2.83
430 431 9.052759 CCTATTAAGCACTCGGTATTAAACAAT 57.947 33.333 0.00 0.00 0.00 2.71
452 453 9.353431 ACAATATATTATTGTCTCCATGCAACA 57.647 29.630 7.00 0.00 37.69 3.33
455 456 5.981088 ATTATTGTCTCCATGCAACAACA 57.019 34.783 3.12 0.00 35.87 3.33
456 457 5.981088 TTATTGTCTCCATGCAACAACAT 57.019 34.783 3.12 0.00 35.87 2.71
457 458 3.921119 TTGTCTCCATGCAACAACATC 57.079 42.857 0.00 0.00 0.00 3.06
458 459 2.861274 TGTCTCCATGCAACAACATCA 58.139 42.857 0.00 0.00 0.00 3.07
459 460 3.423749 TGTCTCCATGCAACAACATCAT 58.576 40.909 0.00 0.00 0.00 2.45
460 461 3.441222 TGTCTCCATGCAACAACATCATC 59.559 43.478 0.00 0.00 0.00 2.92
461 462 3.441222 GTCTCCATGCAACAACATCATCA 59.559 43.478 0.00 0.00 0.00 3.07
462 463 3.441222 TCTCCATGCAACAACATCATCAC 59.559 43.478 0.00 0.00 0.00 3.06
463 464 3.155501 TCCATGCAACAACATCATCACA 58.844 40.909 0.00 0.00 0.00 3.58
464 465 3.764972 TCCATGCAACAACATCATCACAT 59.235 39.130 0.00 0.00 0.00 3.21
465 466 3.862845 CCATGCAACAACATCATCACATG 59.137 43.478 0.00 0.00 34.78 3.21
466 467 4.490743 CATGCAACAACATCATCACATGT 58.509 39.130 0.00 0.00 38.74 3.21
467 468 5.393243 CCATGCAACAACATCATCACATGTA 60.393 40.000 0.00 0.00 35.87 2.29
468 469 5.299582 TGCAACAACATCATCACATGTAG 57.700 39.130 0.00 0.00 35.87 2.74
469 470 4.761227 TGCAACAACATCATCACATGTAGT 59.239 37.500 0.00 0.00 35.87 2.73
470 471 5.106594 TGCAACAACATCATCACATGTAGTC 60.107 40.000 0.00 0.00 35.87 2.59
471 472 5.122869 GCAACAACATCATCACATGTAGTCT 59.877 40.000 0.00 0.00 35.87 3.24
472 473 6.674037 GCAACAACATCATCACATGTAGTCTC 60.674 42.308 0.00 0.00 35.87 3.36
473 474 6.291648 ACAACATCATCACATGTAGTCTCT 57.708 37.500 0.00 0.00 35.87 3.10
474 475 6.336566 ACAACATCATCACATGTAGTCTCTC 58.663 40.000 0.00 0.00 35.87 3.20
475 476 6.154192 ACAACATCATCACATGTAGTCTCTCT 59.846 38.462 0.00 0.00 35.87 3.10
476 477 6.788598 ACATCATCACATGTAGTCTCTCTT 57.211 37.500 0.00 0.00 35.10 2.85
477 478 6.804677 ACATCATCACATGTAGTCTCTCTTC 58.195 40.000 0.00 0.00 35.10 2.87
478 479 6.606796 ACATCATCACATGTAGTCTCTCTTCT 59.393 38.462 0.00 0.00 35.10 2.85
479 480 7.777440 ACATCATCACATGTAGTCTCTCTTCTA 59.223 37.037 0.00 0.00 35.10 2.10
480 481 8.628280 CATCATCACATGTAGTCTCTCTTCTAA 58.372 37.037 0.00 0.00 0.00 2.10
481 482 8.219546 TCATCACATGTAGTCTCTCTTCTAAG 57.780 38.462 0.00 0.00 0.00 2.18
482 483 8.049721 TCATCACATGTAGTCTCTCTTCTAAGA 58.950 37.037 0.00 0.00 0.00 2.10
483 484 8.681806 CATCACATGTAGTCTCTCTTCTAAGAA 58.318 37.037 0.00 0.00 34.03 2.52
484 485 8.637196 TCACATGTAGTCTCTCTTCTAAGAAA 57.363 34.615 0.00 0.00 34.03 2.52
485 486 9.249053 TCACATGTAGTCTCTCTTCTAAGAAAT 57.751 33.333 0.00 0.00 34.03 2.17
490 491 9.756571 TGTAGTCTCTCTTCTAAGAAATAACCT 57.243 33.333 0.00 0.00 34.03 3.50
492 493 8.887264 AGTCTCTCTTCTAAGAAATAACCTCA 57.113 34.615 0.00 0.00 34.03 3.86
493 494 8.966868 AGTCTCTCTTCTAAGAAATAACCTCAG 58.033 37.037 0.00 0.00 34.03 3.35
494 495 8.745590 GTCTCTCTTCTAAGAAATAACCTCAGT 58.254 37.037 0.00 0.00 34.03 3.41
495 496 9.976776 TCTCTCTTCTAAGAAATAACCTCAGTA 57.023 33.333 0.00 0.00 34.03 2.74
502 503 9.924650 TCTAAGAAATAACCTCAGTAAACTCAC 57.075 33.333 0.00 0.00 0.00 3.51
503 504 9.706691 CTAAGAAATAACCTCAGTAAACTCACA 57.293 33.333 0.00 0.00 0.00 3.58
504 505 8.974060 AAGAAATAACCTCAGTAAACTCACAA 57.026 30.769 0.00 0.00 0.00 3.33
505 506 8.379457 AGAAATAACCTCAGTAAACTCACAAC 57.621 34.615 0.00 0.00 0.00 3.32
506 507 7.990886 AGAAATAACCTCAGTAAACTCACAACA 59.009 33.333 0.00 0.00 0.00 3.33
507 508 8.691661 AAATAACCTCAGTAAACTCACAACAT 57.308 30.769 0.00 0.00 0.00 2.71
508 509 8.691661 AATAACCTCAGTAAACTCACAACATT 57.308 30.769 0.00 0.00 0.00 2.71
509 510 6.377327 AACCTCAGTAAACTCACAACATTG 57.623 37.500 0.00 0.00 0.00 2.82
510 511 5.437060 ACCTCAGTAAACTCACAACATTGT 58.563 37.500 0.00 0.00 43.36 2.71
526 527 8.359875 ACAACATTGTGTATCCATTTAATCCA 57.640 30.769 0.00 0.00 40.49 3.41
527 528 8.980596 ACAACATTGTGTATCCATTTAATCCAT 58.019 29.630 0.00 0.00 40.49 3.41
583 584 6.668323 ACTTATGTGATTTCACTTTCCAACG 58.332 36.000 11.67 0.00 46.55 4.10
584 585 6.485313 ACTTATGTGATTTCACTTTCCAACGA 59.515 34.615 11.67 0.00 46.55 3.85
585 586 5.964958 ATGTGATTTCACTTTCCAACGAT 57.035 34.783 11.67 0.00 46.55 3.73
586 587 5.766150 TGTGATTTCACTTTCCAACGATT 57.234 34.783 11.67 0.00 46.55 3.34
587 588 6.869315 TGTGATTTCACTTTCCAACGATTA 57.131 33.333 11.67 0.00 46.55 1.75
588 589 7.265647 TGTGATTTCACTTTCCAACGATTAA 57.734 32.000 11.67 0.00 46.55 1.40
589 590 7.359595 TGTGATTTCACTTTCCAACGATTAAG 58.640 34.615 11.67 0.00 46.55 1.85
590 591 7.227711 TGTGATTTCACTTTCCAACGATTAAGA 59.772 33.333 11.67 0.00 46.55 2.10
591 592 7.534239 GTGATTTCACTTTCCAACGATTAAGAC 59.466 37.037 3.45 0.00 43.25 3.01
592 593 5.585500 TTCACTTTCCAACGATTAAGACG 57.415 39.130 0.00 3.82 0.00 4.18
593 594 4.624015 TCACTTTCCAACGATTAAGACGT 58.376 39.130 0.00 0.00 45.89 4.34
594 595 5.771469 TCACTTTCCAACGATTAAGACGTA 58.229 37.500 10.10 0.00 43.16 3.57
595 596 5.630680 TCACTTTCCAACGATTAAGACGTAC 59.369 40.000 10.10 0.00 43.16 3.67
596 597 4.618489 ACTTTCCAACGATTAAGACGTACG 59.382 41.667 15.01 15.01 43.16 3.67
597 598 3.829886 TCCAACGATTAAGACGTACGT 57.170 42.857 23.04 23.04 43.16 3.57
598 599 4.159377 TCCAACGATTAAGACGTACGTT 57.841 40.909 23.70 10.28 45.55 3.99
600 601 3.959609 AACGATTAAGACGTACGTTGC 57.040 42.857 23.70 10.82 43.60 4.17
601 602 2.932498 ACGATTAAGACGTACGTTGCA 58.068 42.857 23.70 7.51 42.17 4.08
602 603 2.658325 ACGATTAAGACGTACGTTGCAC 59.342 45.455 23.70 9.63 42.17 4.57
603 604 4.736103 ACGATTAAGACGTACGTTGCACG 61.736 47.826 23.70 22.30 42.17 5.34
647 648 0.665835 TGCCAACAAAATCGTTCGCT 59.334 45.000 0.00 0.00 34.53 4.93
655 661 0.325602 AAATCGTTCGCTAACCCCCA 59.674 50.000 0.00 0.00 31.46 4.96
659 665 1.078637 GTTCGCTAACCCCCACCTC 60.079 63.158 0.00 0.00 0.00 3.85
868 896 4.807834 GGGACGTAGCTCTTGTTAAATACC 59.192 45.833 0.00 0.00 0.00 2.73
987 4337 1.979469 GTGAACAGTGTGAGATCGACG 59.021 52.381 0.00 0.00 0.00 5.12
1011 4366 2.588877 CGCGCGATGGGGAAGAAT 60.589 61.111 28.94 0.00 0.00 2.40
1312 4727 2.439701 CCTCCCTCGCACTCCGTA 60.440 66.667 0.00 0.00 38.35 4.02
1371 4808 6.546034 TCATCCGTATCTCAACATCTACAAGA 59.454 38.462 0.00 0.00 0.00 3.02
1443 4941 0.976641 AGCACGATGGAGTGGAGAAA 59.023 50.000 0.00 0.00 42.09 2.52
1448 4949 1.743996 GATGGAGTGGAGAAACTGGC 58.256 55.000 0.00 0.00 0.00 4.85
1500 5345 0.445436 CGACAGCAACCAGAAGCATC 59.555 55.000 0.00 0.00 0.00 3.91
1545 5438 3.978217 ACGAACAAAATGTGCAAATACGG 59.022 39.130 0.00 0.00 0.00 4.02
1951 5863 1.264045 GGCTCCTCTGGCTCAAGAGT 61.264 60.000 9.67 0.00 41.89 3.24
2599 6516 0.248094 CGACGAGCGCACTCAAGATA 60.248 55.000 11.47 0.00 43.66 1.98
2689 6606 3.520862 GACGTCGGGGCGGTGATA 61.521 66.667 0.00 0.00 35.98 2.15
2691 6608 3.524606 CGTCGGGGCGGTGATACT 61.525 66.667 0.00 0.00 0.00 2.12
2972 6897 7.432148 TGAAGAGGTATAAGAGGTAATTGCA 57.568 36.000 0.00 0.00 0.00 4.08
2976 6901 6.330250 AGAGGTATAAGAGGTAATTGCACCAT 59.670 38.462 0.31 0.00 41.40 3.55
2977 6902 6.911308 AGGTATAAGAGGTAATTGCACCATT 58.089 36.000 0.31 0.00 41.40 3.16
2978 6903 7.354312 AGGTATAAGAGGTAATTGCACCATTT 58.646 34.615 0.31 0.00 41.40 2.32
2979 6904 7.285401 AGGTATAAGAGGTAATTGCACCATTTG 59.715 37.037 0.31 0.00 41.40 2.32
3010 6935 1.942657 GCCATGTGCATGATAAGACGT 59.057 47.619 13.21 0.00 41.20 4.34
3016 6941 5.066968 TGTGCATGATAAGACGTTGAGTA 57.933 39.130 0.00 0.00 0.00 2.59
3024 6949 1.991121 AGACGTTGAGTAGGGTGTGA 58.009 50.000 0.00 0.00 0.00 3.58
3025 6950 2.526432 AGACGTTGAGTAGGGTGTGAT 58.474 47.619 0.00 0.00 0.00 3.06
3026 6951 2.231478 AGACGTTGAGTAGGGTGTGATG 59.769 50.000 0.00 0.00 0.00 3.07
3033 6991 3.901222 TGAGTAGGGTGTGATGAGTCAAA 59.099 43.478 0.00 0.00 35.80 2.69
3059 7017 6.091305 TGACATAACATGAAAGAGCGAAGAAG 59.909 38.462 0.00 0.00 0.00 2.85
3065 7023 6.202226 ACATGAAAGAGCGAAGAAGAAAAAC 58.798 36.000 0.00 0.00 0.00 2.43
3070 7107 8.621286 TGAAAGAGCGAAGAAGAAAAACTAAAT 58.379 29.630 0.00 0.00 0.00 1.40
3112 7369 7.582667 TCTCAATGTAAGATCTCACGGATAA 57.417 36.000 0.00 0.00 34.33 1.75
3147 7446 2.030451 ACTTCGTTAAGTCCCAGTCGAC 60.030 50.000 7.70 7.70 42.42 4.20
3163 7462 3.824151 GTCGACTGAGACTTACCAAGAC 58.176 50.000 8.70 0.00 38.09 3.01
3164 7463 3.502979 GTCGACTGAGACTTACCAAGACT 59.497 47.826 8.70 0.00 38.09 3.24
3165 7464 3.502595 TCGACTGAGACTTACCAAGACTG 59.497 47.826 0.00 0.00 33.75 3.51
3166 7465 3.580731 GACTGAGACTTACCAAGACTGC 58.419 50.000 0.00 0.00 33.75 4.40
3167 7466 2.029828 ACTGAGACTTACCAAGACTGCG 60.030 50.000 0.00 0.00 33.75 5.18
3168 7467 1.336887 TGAGACTTACCAAGACTGCGC 60.337 52.381 0.00 0.00 33.75 6.09
3211 7510 7.390996 TGCTCATGCATAAATTTGTTTTGGAAT 59.609 29.630 0.00 0.00 45.31 3.01
3224 7523 4.218417 TGTTTTGGAATAAGAAGCTCCAGC 59.782 41.667 0.00 0.00 40.29 4.85
3266 7786 1.218230 CTTTATCCTCTGCTCGCCGC 61.218 60.000 0.00 0.00 39.77 6.53
3312 7997 1.446907 CTCAGTGGTGAATGAGTGGC 58.553 55.000 0.00 0.00 38.49 5.01
3377 8070 2.525629 TGTCCTGGGCGTGGAAGA 60.526 61.111 0.00 0.00 35.10 2.87
3383 8076 2.264794 GGGCGTGGAAGACATCGT 59.735 61.111 0.00 0.00 0.00 3.73
3385 8078 0.527817 GGGCGTGGAAGACATCGTAG 60.528 60.000 0.00 0.00 0.00 3.51
3490 8183 0.534203 GACGGTGTTGGTGGATGTGT 60.534 55.000 0.00 0.00 0.00 3.72
3514 8207 1.661821 GGGCAGCACGATACTAGCG 60.662 63.158 0.00 0.00 0.00 4.26
3516 8209 1.065928 GCAGCACGATACTAGCGGT 59.934 57.895 0.00 0.00 0.00 5.68
3517 8210 1.209275 GCAGCACGATACTAGCGGTG 61.209 60.000 0.00 0.00 0.00 4.94
3599 8292 0.473755 AGTCTGTTGTGGTGATGGCA 59.526 50.000 0.00 0.00 0.00 4.92
3652 8345 1.946283 GCGCCCTTCCTTATCCTATGC 60.946 57.143 0.00 0.00 0.00 3.14
3659 8352 3.074857 TCCTTATCCTATGCCCAAGGT 57.925 47.619 0.00 0.00 37.59 3.50
3662 8355 0.396435 TATCCTATGCCCAAGGTGCG 59.604 55.000 0.00 0.00 35.48 5.34
3773 8470 3.476031 CTGAGTGGTGGTTGCGGGT 62.476 63.158 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.547753 GTGAGCAATTGATACCTAATCTTAGAA 57.452 33.333 10.34 0.00 35.45 2.10
27 28 8.704668 TGTGAGCAATTGATACCTAATCTTAGA 58.295 33.333 10.34 0.00 35.45 2.10
28 29 8.768955 GTGTGAGCAATTGATACCTAATCTTAG 58.231 37.037 10.34 0.00 35.45 2.18
29 30 7.715249 GGTGTGAGCAATTGATACCTAATCTTA 59.285 37.037 10.34 0.00 35.45 2.10
30 31 6.543831 GGTGTGAGCAATTGATACCTAATCTT 59.456 38.462 10.34 0.00 35.45 2.40
31 32 6.058183 GGTGTGAGCAATTGATACCTAATCT 58.942 40.000 10.34 0.00 35.45 2.40
32 33 5.822519 TGGTGTGAGCAATTGATACCTAATC 59.177 40.000 10.34 0.00 34.93 1.75
33 34 5.754782 TGGTGTGAGCAATTGATACCTAAT 58.245 37.500 10.34 0.00 0.00 1.73
34 35 5.172687 TGGTGTGAGCAATTGATACCTAA 57.827 39.130 10.34 0.00 0.00 2.69
35 36 4.835284 TGGTGTGAGCAATTGATACCTA 57.165 40.909 10.34 0.00 0.00 3.08
36 37 3.719268 TGGTGTGAGCAATTGATACCT 57.281 42.857 10.34 0.00 0.00 3.08
37 38 3.947196 TCATGGTGTGAGCAATTGATACC 59.053 43.478 10.34 8.44 31.80 2.73
38 39 5.762825 ATCATGGTGTGAGCAATTGATAC 57.237 39.130 10.34 4.99 40.92 2.24
39 40 9.571816 TTAATATCATGGTGTGAGCAATTGATA 57.428 29.630 10.34 0.00 40.92 2.15
40 41 6.971726 AATATCATGGTGTGAGCAATTGAT 57.028 33.333 10.34 1.34 40.92 2.57
41 42 7.774625 TCTTAATATCATGGTGTGAGCAATTGA 59.225 33.333 10.34 0.00 40.92 2.57
42 43 7.859377 GTCTTAATATCATGGTGTGAGCAATTG 59.141 37.037 0.00 0.00 40.92 2.32
43 44 7.013655 GGTCTTAATATCATGGTGTGAGCAATT 59.986 37.037 0.00 0.00 40.92 2.32
44 45 6.488006 GGTCTTAATATCATGGTGTGAGCAAT 59.512 38.462 0.00 0.00 40.92 3.56
45 46 5.822519 GGTCTTAATATCATGGTGTGAGCAA 59.177 40.000 0.00 0.00 40.92 3.91
46 47 5.104569 TGGTCTTAATATCATGGTGTGAGCA 60.105 40.000 0.00 0.00 40.92 4.26
47 48 5.368145 TGGTCTTAATATCATGGTGTGAGC 58.632 41.667 0.00 0.00 40.92 4.26
48 49 7.012704 CCTTTGGTCTTAATATCATGGTGTGAG 59.987 40.741 0.00 0.00 40.92 3.51
49 50 6.828273 CCTTTGGTCTTAATATCATGGTGTGA 59.172 38.462 0.00 0.00 42.06 3.58
50 51 6.828273 TCCTTTGGTCTTAATATCATGGTGTG 59.172 38.462 0.00 0.00 0.00 3.82
51 52 6.969043 TCCTTTGGTCTTAATATCATGGTGT 58.031 36.000 0.00 0.00 0.00 4.16
52 53 8.355169 CAATCCTTTGGTCTTAATATCATGGTG 58.645 37.037 0.00 0.00 0.00 4.17
53 54 7.014615 GCAATCCTTTGGTCTTAATATCATGGT 59.985 37.037 0.00 0.00 33.22 3.55
54 55 7.014518 TGCAATCCTTTGGTCTTAATATCATGG 59.985 37.037 0.00 0.00 33.22 3.66
55 56 7.944061 TGCAATCCTTTGGTCTTAATATCATG 58.056 34.615 0.00 0.00 33.22 3.07
56 57 8.716674 ATGCAATCCTTTGGTCTTAATATCAT 57.283 30.769 0.00 0.00 33.22 2.45
57 58 8.169977 GATGCAATCCTTTGGTCTTAATATCA 57.830 34.615 0.00 0.00 37.38 2.15
74 75 3.072184 AGGGAGTACATGGAGATGCAATC 59.928 47.826 0.00 0.00 46.04 2.67
75 76 3.051581 AGGGAGTACATGGAGATGCAAT 58.948 45.455 0.00 0.00 32.14 3.56
76 77 2.435805 GAGGGAGTACATGGAGATGCAA 59.564 50.000 0.00 0.00 32.14 4.08
77 78 2.042464 GAGGGAGTACATGGAGATGCA 58.958 52.381 0.00 0.00 32.14 3.96
78 79 1.346068 GGAGGGAGTACATGGAGATGC 59.654 57.143 0.00 0.00 32.14 3.91
79 80 1.615883 CGGAGGGAGTACATGGAGATG 59.384 57.143 0.00 0.00 35.49 2.90
80 81 1.218196 ACGGAGGGAGTACATGGAGAT 59.782 52.381 0.00 0.00 0.00 2.75
81 82 0.629596 ACGGAGGGAGTACATGGAGA 59.370 55.000 0.00 0.00 0.00 3.71
82 83 1.486211 AACGGAGGGAGTACATGGAG 58.514 55.000 0.00 0.00 0.00 3.86
83 84 1.829222 GAAACGGAGGGAGTACATGGA 59.171 52.381 0.00 0.00 0.00 3.41
84 85 1.831736 AGAAACGGAGGGAGTACATGG 59.168 52.381 0.00 0.00 0.00 3.66
85 86 3.611766 AAGAAACGGAGGGAGTACATG 57.388 47.619 0.00 0.00 0.00 3.21
86 87 4.635699 AAAAGAAACGGAGGGAGTACAT 57.364 40.909 0.00 0.00 0.00 2.29
87 88 4.426736 AAAAAGAAACGGAGGGAGTACA 57.573 40.909 0.00 0.00 0.00 2.90
88 89 5.545588 ACTAAAAAGAAACGGAGGGAGTAC 58.454 41.667 0.00 0.00 0.00 2.73
89 90 5.813513 ACTAAAAAGAAACGGAGGGAGTA 57.186 39.130 0.00 0.00 0.00 2.59
90 91 4.701651 ACTAAAAAGAAACGGAGGGAGT 57.298 40.909 0.00 0.00 0.00 3.85
91 92 4.151867 CGAACTAAAAAGAAACGGAGGGAG 59.848 45.833 0.00 0.00 0.00 4.30
92 93 4.060205 CGAACTAAAAAGAAACGGAGGGA 58.940 43.478 0.00 0.00 0.00 4.20
93 94 3.364664 GCGAACTAAAAAGAAACGGAGGG 60.365 47.826 0.00 0.00 0.00 4.30
94 95 3.249080 TGCGAACTAAAAAGAAACGGAGG 59.751 43.478 0.00 0.00 0.00 4.30
95 96 4.461992 TGCGAACTAAAAAGAAACGGAG 57.538 40.909 0.00 0.00 0.00 4.63
96 97 6.730960 ATATGCGAACTAAAAAGAAACGGA 57.269 33.333 0.00 0.00 0.00 4.69
97 98 7.638683 CCTTATATGCGAACTAAAAAGAAACGG 59.361 37.037 0.00 0.00 0.00 4.44
98 99 8.173130 ACCTTATATGCGAACTAAAAAGAAACG 58.827 33.333 0.00 0.00 0.00 3.60
99 100 9.836076 AACCTTATATGCGAACTAAAAAGAAAC 57.164 29.630 0.00 0.00 0.00 2.78
105 106 9.656040 TGACTAAACCTTATATGCGAACTAAAA 57.344 29.630 0.00 0.00 0.00 1.52
106 107 9.656040 TTGACTAAACCTTATATGCGAACTAAA 57.344 29.630 0.00 0.00 0.00 1.85
107 108 9.656040 TTTGACTAAACCTTATATGCGAACTAA 57.344 29.630 0.00 0.00 0.00 2.24
108 109 9.309516 CTTTGACTAAACCTTATATGCGAACTA 57.690 33.333 0.00 0.00 0.00 2.24
109 110 7.822822 ACTTTGACTAAACCTTATATGCGAACT 59.177 33.333 0.00 0.00 0.00 3.01
110 111 7.971455 ACTTTGACTAAACCTTATATGCGAAC 58.029 34.615 0.00 0.00 0.00 3.95
111 112 7.820386 TGACTTTGACTAAACCTTATATGCGAA 59.180 33.333 0.00 0.00 0.00 4.70
112 113 7.324935 TGACTTTGACTAAACCTTATATGCGA 58.675 34.615 0.00 0.00 0.00 5.10
113 114 7.534085 TGACTTTGACTAAACCTTATATGCG 57.466 36.000 0.00 0.00 0.00 4.73
114 115 9.937175 GATTGACTTTGACTAAACCTTATATGC 57.063 33.333 0.00 0.00 0.00 3.14
189 190 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
190 191 8.694581 TGGTGCATCTGATAATATTGATTTCA 57.305 30.769 0.00 0.00 0.00 2.69
191 192 9.569167 CATGGTGCATCTGATAATATTGATTTC 57.431 33.333 0.00 0.00 0.00 2.17
192 193 9.304335 TCATGGTGCATCTGATAATATTGATTT 57.696 29.630 0.00 0.00 0.00 2.17
193 194 8.873186 TCATGGTGCATCTGATAATATTGATT 57.127 30.769 0.00 0.00 0.00 2.57
194 195 8.873186 TTCATGGTGCATCTGATAATATTGAT 57.127 30.769 0.00 0.00 0.00 2.57
195 196 8.570488 GTTTCATGGTGCATCTGATAATATTGA 58.430 33.333 0.00 0.00 0.00 2.57
196 197 7.536281 CGTTTCATGGTGCATCTGATAATATTG 59.464 37.037 0.00 0.00 0.00 1.90
197 198 7.229306 ACGTTTCATGGTGCATCTGATAATATT 59.771 33.333 0.00 0.00 0.00 1.28
198 199 6.712095 ACGTTTCATGGTGCATCTGATAATAT 59.288 34.615 0.00 0.00 0.00 1.28
199 200 6.054941 ACGTTTCATGGTGCATCTGATAATA 58.945 36.000 0.00 0.00 0.00 0.98
200 201 4.883585 ACGTTTCATGGTGCATCTGATAAT 59.116 37.500 0.00 0.00 0.00 1.28
201 202 4.260985 ACGTTTCATGGTGCATCTGATAA 58.739 39.130 0.00 0.00 0.00 1.75
202 203 3.872696 ACGTTTCATGGTGCATCTGATA 58.127 40.909 0.00 0.00 0.00 2.15
203 204 2.715046 ACGTTTCATGGTGCATCTGAT 58.285 42.857 0.00 0.00 0.00 2.90
204 205 2.183478 ACGTTTCATGGTGCATCTGA 57.817 45.000 0.00 0.00 0.00 3.27
205 206 4.621068 AATACGTTTCATGGTGCATCTG 57.379 40.909 0.00 0.00 0.00 2.90
206 207 5.640732 GAAAATACGTTTCATGGTGCATCT 58.359 37.500 0.00 0.00 44.42 2.90
207 208 5.932021 GAAAATACGTTTCATGGTGCATC 57.068 39.130 0.00 0.00 44.42 3.91
274 275 9.930693 AAACTACACAAAGTTTGACCAAATTTA 57.069 25.926 22.23 0.00 45.60 1.40
275 276 8.840833 AAACTACACAAAGTTTGACCAAATTT 57.159 26.923 22.23 11.30 45.60 1.82
286 287 6.207810 TGGACAAAGTCAAACTACACAAAGTT 59.792 34.615 0.00 0.00 41.46 2.66
287 288 5.708230 TGGACAAAGTCAAACTACACAAAGT 59.292 36.000 0.00 0.00 33.68 2.66
288 289 6.189677 TGGACAAAGTCAAACTACACAAAG 57.810 37.500 0.00 0.00 33.68 2.77
289 290 6.576662 TTGGACAAAGTCAAACTACACAAA 57.423 33.333 0.00 0.00 33.68 2.83
290 291 6.576662 TTTGGACAAAGTCAAACTACACAA 57.423 33.333 0.00 0.00 33.68 3.33
291 292 6.601613 AGATTTGGACAAAGTCAAACTACACA 59.398 34.615 3.71 0.00 33.68 3.72
292 293 7.027778 AGATTTGGACAAAGTCAAACTACAC 57.972 36.000 3.71 0.00 33.68 2.90
293 294 7.639113 AAGATTTGGACAAAGTCAAACTACA 57.361 32.000 3.71 0.00 33.68 2.74
297 298 9.076596 GCATATAAGATTTGGACAAAGTCAAAC 57.923 33.333 3.71 0.00 33.68 2.93
298 299 7.967854 CGCATATAAGATTTGGACAAAGTCAAA 59.032 33.333 3.71 0.00 33.68 2.69
299 300 7.415095 CCGCATATAAGATTTGGACAAAGTCAA 60.415 37.037 3.71 0.00 33.68 3.18
300 301 6.038161 CCGCATATAAGATTTGGACAAAGTCA 59.962 38.462 3.71 0.00 33.68 3.41
301 302 6.260050 TCCGCATATAAGATTTGGACAAAGTC 59.740 38.462 3.71 2.43 33.32 3.01
302 303 6.119536 TCCGCATATAAGATTTGGACAAAGT 58.880 36.000 3.71 0.00 33.32 2.66
303 304 6.260936 ACTCCGCATATAAGATTTGGACAAAG 59.739 38.462 3.71 0.00 33.32 2.77
304 305 6.119536 ACTCCGCATATAAGATTTGGACAAA 58.880 36.000 0.00 0.00 34.46 2.83
305 306 5.680619 ACTCCGCATATAAGATTTGGACAA 58.319 37.500 0.00 0.00 0.00 3.18
306 307 5.290493 ACTCCGCATATAAGATTTGGACA 57.710 39.130 0.00 0.00 0.00 4.02
307 308 7.724305 TTTACTCCGCATATAAGATTTGGAC 57.276 36.000 0.00 0.00 0.00 4.02
308 309 8.740123 TTTTTACTCCGCATATAAGATTTGGA 57.260 30.769 0.00 0.00 0.00 3.53
331 332 5.059161 GTGTTTAGTACTCCCTCCGTTTTT 58.941 41.667 0.00 0.00 0.00 1.94
332 333 4.635223 GTGTTTAGTACTCCCTCCGTTTT 58.365 43.478 0.00 0.00 0.00 2.43
333 334 3.305608 CGTGTTTAGTACTCCCTCCGTTT 60.306 47.826 0.00 0.00 0.00 3.60
334 335 2.229784 CGTGTTTAGTACTCCCTCCGTT 59.770 50.000 0.00 0.00 0.00 4.44
335 336 1.815003 CGTGTTTAGTACTCCCTCCGT 59.185 52.381 0.00 0.00 0.00 4.69
336 337 1.133790 CCGTGTTTAGTACTCCCTCCG 59.866 57.143 0.00 0.00 0.00 4.63
337 338 1.134877 GCCGTGTTTAGTACTCCCTCC 60.135 57.143 0.00 0.00 0.00 4.30
338 339 1.468736 CGCCGTGTTTAGTACTCCCTC 60.469 57.143 0.00 0.00 0.00 4.30
339 340 0.529378 CGCCGTGTTTAGTACTCCCT 59.471 55.000 0.00 0.00 0.00 4.20
340 341 1.080435 GCGCCGTGTTTAGTACTCCC 61.080 60.000 0.00 0.00 0.00 4.30
341 342 0.388907 TGCGCCGTGTTTAGTACTCC 60.389 55.000 4.18 0.00 0.00 3.85
342 343 1.389106 CTTGCGCCGTGTTTAGTACTC 59.611 52.381 4.18 0.00 0.00 2.59
343 344 1.425412 CTTGCGCCGTGTTTAGTACT 58.575 50.000 4.18 0.00 0.00 2.73
344 345 0.441145 CCTTGCGCCGTGTTTAGTAC 59.559 55.000 4.18 0.00 0.00 2.73
345 346 1.293267 GCCTTGCGCCGTGTTTAGTA 61.293 55.000 4.18 0.00 0.00 1.82
346 347 2.613506 GCCTTGCGCCGTGTTTAGT 61.614 57.895 4.18 0.00 0.00 2.24
347 348 1.017177 TAGCCTTGCGCCGTGTTTAG 61.017 55.000 4.18 0.00 38.78 1.85
348 349 1.004799 TAGCCTTGCGCCGTGTTTA 60.005 52.632 4.18 0.00 38.78 2.01
349 350 2.281208 TAGCCTTGCGCCGTGTTT 60.281 55.556 4.18 0.00 38.78 2.83
350 351 3.047877 GTAGCCTTGCGCCGTGTT 61.048 61.111 4.18 0.00 38.78 3.32
351 352 3.934391 GAGTAGCCTTGCGCCGTGT 62.934 63.158 4.18 0.00 38.78 4.49
352 353 3.188786 GAGTAGCCTTGCGCCGTG 61.189 66.667 4.18 0.00 38.78 4.94
353 354 3.358076 GAGAGTAGCCTTGCGCCGT 62.358 63.158 4.18 0.00 38.78 5.68
354 355 2.583593 GAGAGTAGCCTTGCGCCG 60.584 66.667 4.18 0.00 38.78 6.46
355 356 2.202946 GGAGAGTAGCCTTGCGCC 60.203 66.667 4.18 0.00 38.78 6.53
356 357 0.462759 ATTGGAGAGTAGCCTTGCGC 60.463 55.000 0.00 0.00 37.98 6.09
357 358 1.576356 GATTGGAGAGTAGCCTTGCG 58.424 55.000 0.00 0.00 0.00 4.85
358 359 1.134670 ACGATTGGAGAGTAGCCTTGC 60.135 52.381 0.00 0.00 0.00 4.01
359 360 2.969628 ACGATTGGAGAGTAGCCTTG 57.030 50.000 0.00 0.00 0.00 3.61
360 361 3.132467 GGTTACGATTGGAGAGTAGCCTT 59.868 47.826 0.00 0.00 38.27 4.35
361 362 2.694109 GGTTACGATTGGAGAGTAGCCT 59.306 50.000 0.00 0.00 38.27 4.58
362 363 2.429610 TGGTTACGATTGGAGAGTAGCC 59.570 50.000 0.00 1.61 40.60 3.93
363 364 3.119245 TGTGGTTACGATTGGAGAGTAGC 60.119 47.826 0.00 0.00 0.00 3.58
364 365 4.158025 AGTGTGGTTACGATTGGAGAGTAG 59.842 45.833 0.00 0.00 0.00 2.57
365 366 4.084287 AGTGTGGTTACGATTGGAGAGTA 58.916 43.478 0.00 0.00 0.00 2.59
366 367 2.897969 AGTGTGGTTACGATTGGAGAGT 59.102 45.455 0.00 0.00 0.00 3.24
367 368 3.594603 AGTGTGGTTACGATTGGAGAG 57.405 47.619 0.00 0.00 0.00 3.20
368 369 4.345859 AAAGTGTGGTTACGATTGGAGA 57.654 40.909 0.00 0.00 0.00 3.71
369 370 5.432885 AAAAAGTGTGGTTACGATTGGAG 57.567 39.130 0.00 0.00 0.00 3.86
390 391 9.681062 AGTGCTTAATAGGCTGTAAAAGATAAA 57.319 29.630 0.00 0.00 0.00 1.40
391 392 9.326413 GAGTGCTTAATAGGCTGTAAAAGATAA 57.674 33.333 0.00 0.00 0.00 1.75
392 393 7.652105 CGAGTGCTTAATAGGCTGTAAAAGATA 59.348 37.037 0.00 0.00 0.00 1.98
393 394 6.480320 CGAGTGCTTAATAGGCTGTAAAAGAT 59.520 38.462 0.00 0.00 0.00 2.40
394 395 5.810587 CGAGTGCTTAATAGGCTGTAAAAGA 59.189 40.000 0.00 0.00 0.00 2.52
395 396 5.006746 CCGAGTGCTTAATAGGCTGTAAAAG 59.993 44.000 0.00 0.00 0.00 2.27
396 397 4.873827 CCGAGTGCTTAATAGGCTGTAAAA 59.126 41.667 0.00 0.00 0.00 1.52
397 398 4.081309 ACCGAGTGCTTAATAGGCTGTAAA 60.081 41.667 0.00 0.00 0.00 2.01
398 399 3.449737 ACCGAGTGCTTAATAGGCTGTAA 59.550 43.478 0.00 0.00 0.00 2.41
399 400 3.028850 ACCGAGTGCTTAATAGGCTGTA 58.971 45.455 0.00 0.00 0.00 2.74
400 401 1.831736 ACCGAGTGCTTAATAGGCTGT 59.168 47.619 0.00 0.00 0.00 4.40
401 402 2.604046 ACCGAGTGCTTAATAGGCTG 57.396 50.000 0.00 0.00 0.00 4.85
402 403 4.957684 AATACCGAGTGCTTAATAGGCT 57.042 40.909 0.00 0.00 0.00 4.58
403 404 6.480981 TGTTTAATACCGAGTGCTTAATAGGC 59.519 38.462 0.00 0.00 0.00 3.93
404 405 8.428186 TTGTTTAATACCGAGTGCTTAATAGG 57.572 34.615 0.00 0.00 0.00 2.57
439 440 3.441222 TGATGATGTTGTTGCATGGAGAC 59.559 43.478 0.00 0.00 0.00 3.36
440 441 3.441222 GTGATGATGTTGTTGCATGGAGA 59.559 43.478 0.00 0.00 0.00 3.71
441 442 3.191791 TGTGATGATGTTGTTGCATGGAG 59.808 43.478 0.00 0.00 0.00 3.86
442 443 3.155501 TGTGATGATGTTGTTGCATGGA 58.844 40.909 0.00 0.00 0.00 3.41
443 444 3.579335 TGTGATGATGTTGTTGCATGG 57.421 42.857 0.00 0.00 0.00 3.66
444 445 4.490743 ACATGTGATGATGTTGTTGCATG 58.509 39.130 0.00 0.00 38.57 4.06
445 446 4.794278 ACATGTGATGATGTTGTTGCAT 57.206 36.364 0.00 0.00 32.38 3.96
446 447 4.761227 ACTACATGTGATGATGTTGTTGCA 59.239 37.500 9.11 0.00 38.59 4.08
447 448 5.122869 AGACTACATGTGATGATGTTGTTGC 59.877 40.000 9.11 0.00 40.77 4.17
448 449 6.592994 AGAGACTACATGTGATGATGTTGTTG 59.407 38.462 9.11 0.00 40.77 3.33
449 450 6.705302 AGAGACTACATGTGATGATGTTGTT 58.295 36.000 9.11 0.00 40.77 2.83
450 451 6.154192 AGAGAGACTACATGTGATGATGTTGT 59.846 38.462 9.11 0.00 42.54 3.32
451 452 6.571605 AGAGAGACTACATGTGATGATGTTG 58.428 40.000 9.11 0.00 37.70 3.33
452 453 6.788598 AGAGAGACTACATGTGATGATGTT 57.211 37.500 9.11 0.00 37.70 2.71
453 454 6.606796 AGAAGAGAGACTACATGTGATGATGT 59.393 38.462 9.11 0.00 39.87 3.06
454 455 7.041635 AGAAGAGAGACTACATGTGATGATG 57.958 40.000 9.11 0.00 0.00 3.07
455 456 8.759481 TTAGAAGAGAGACTACATGTGATGAT 57.241 34.615 9.11 0.00 0.00 2.45
456 457 8.049721 TCTTAGAAGAGAGACTACATGTGATGA 58.950 37.037 9.11 0.00 0.00 2.92
457 458 8.219546 TCTTAGAAGAGAGACTACATGTGATG 57.780 38.462 9.11 1.08 0.00 3.07
458 459 8.815565 TTCTTAGAAGAGAGACTACATGTGAT 57.184 34.615 9.11 0.00 36.22 3.06
459 460 8.637196 TTTCTTAGAAGAGAGACTACATGTGA 57.363 34.615 9.11 0.00 36.22 3.58
464 465 9.756571 AGGTTATTTCTTAGAAGAGAGACTACA 57.243 33.333 0.00 0.00 36.22 2.74
466 467 9.976776 TGAGGTTATTTCTTAGAAGAGAGACTA 57.023 33.333 0.00 0.00 36.22 2.59
467 468 8.887264 TGAGGTTATTTCTTAGAAGAGAGACT 57.113 34.615 0.00 0.00 36.22 3.24
468 469 8.745590 ACTGAGGTTATTTCTTAGAAGAGAGAC 58.254 37.037 0.00 0.00 36.22 3.36
469 470 8.887264 ACTGAGGTTATTTCTTAGAAGAGAGA 57.113 34.615 0.00 0.00 36.22 3.10
476 477 9.924650 GTGAGTTTACTGAGGTTATTTCTTAGA 57.075 33.333 0.00 0.00 0.00 2.10
477 478 9.706691 TGTGAGTTTACTGAGGTTATTTCTTAG 57.293 33.333 0.00 0.00 0.00 2.18
479 480 8.837389 GTTGTGAGTTTACTGAGGTTATTTCTT 58.163 33.333 0.00 0.00 0.00 2.52
480 481 7.990886 TGTTGTGAGTTTACTGAGGTTATTTCT 59.009 33.333 0.00 0.00 0.00 2.52
481 482 8.149973 TGTTGTGAGTTTACTGAGGTTATTTC 57.850 34.615 0.00 0.00 0.00 2.17
482 483 8.691661 ATGTTGTGAGTTTACTGAGGTTATTT 57.308 30.769 0.00 0.00 0.00 1.40
483 484 8.567948 CAATGTTGTGAGTTTACTGAGGTTATT 58.432 33.333 0.00 0.00 0.00 1.40
484 485 7.719633 ACAATGTTGTGAGTTTACTGAGGTTAT 59.280 33.333 0.00 0.00 40.49 1.89
485 486 7.051623 ACAATGTTGTGAGTTTACTGAGGTTA 58.948 34.615 0.00 0.00 40.49 2.85
486 487 5.885912 ACAATGTTGTGAGTTTACTGAGGTT 59.114 36.000 0.00 0.00 40.49 3.50
487 488 5.437060 ACAATGTTGTGAGTTTACTGAGGT 58.563 37.500 0.00 0.00 40.49 3.85
565 566 7.534239 GTCTTAATCGTTGGAAAGTGAAATCAC 59.466 37.037 5.40 5.40 46.77 3.06
566 567 7.570507 CGTCTTAATCGTTGGAAAGTGAAATCA 60.571 37.037 0.00 0.00 0.00 2.57
567 568 6.736853 CGTCTTAATCGTTGGAAAGTGAAATC 59.263 38.462 0.00 0.00 0.00 2.17
568 569 6.204108 ACGTCTTAATCGTTGGAAAGTGAAAT 59.796 34.615 0.98 0.00 38.38 2.17
569 570 5.524646 ACGTCTTAATCGTTGGAAAGTGAAA 59.475 36.000 0.98 0.00 38.38 2.69
570 571 5.051816 ACGTCTTAATCGTTGGAAAGTGAA 58.948 37.500 0.98 0.00 38.38 3.18
571 572 4.624015 ACGTCTTAATCGTTGGAAAGTGA 58.376 39.130 0.98 0.00 38.38 3.41
572 573 4.985044 ACGTCTTAATCGTTGGAAAGTG 57.015 40.909 0.98 0.00 38.38 3.16
573 574 4.618489 CGTACGTCTTAATCGTTGGAAAGT 59.382 41.667 7.22 0.00 41.72 2.66
574 575 4.618489 ACGTACGTCTTAATCGTTGGAAAG 59.382 41.667 16.72 0.46 41.72 2.62
575 576 4.545610 ACGTACGTCTTAATCGTTGGAAA 58.454 39.130 16.72 0.00 41.72 3.13
576 577 4.159377 ACGTACGTCTTAATCGTTGGAA 57.841 40.909 16.72 0.00 41.72 3.53
577 578 3.829886 ACGTACGTCTTAATCGTTGGA 57.170 42.857 16.72 0.00 41.72 3.53
580 581 3.120121 GTGCAACGTACGTCTTAATCGTT 59.880 43.478 23.05 0.00 43.68 3.85
581 582 2.658325 GTGCAACGTACGTCTTAATCGT 59.342 45.455 23.05 0.00 43.86 3.73
582 583 3.265138 GTGCAACGTACGTCTTAATCG 57.735 47.619 23.05 5.65 0.00 3.34
598 599 3.979948 TACTAGTAAGTTTGCACGTGCA 58.020 40.909 37.86 37.86 42.41 4.57
599 600 4.446719 AGTTACTAGTAAGTTTGCACGTGC 59.553 41.667 33.11 33.11 37.15 5.34
600 601 6.520792 AAGTTACTAGTAAGTTTGCACGTG 57.479 37.500 24.10 12.28 35.75 4.49
601 602 8.647143 TTTAAGTTACTAGTAAGTTTGCACGT 57.353 30.769 30.97 14.59 38.95 4.49
604 605 9.887406 GCATTTTAAGTTACTAGTAAGTTTGCA 57.113 29.630 30.68 20.76 37.85 4.08
605 606 9.338291 GGCATTTTAAGTTACTAGTAAGTTTGC 57.662 33.333 30.97 30.03 38.95 3.68
609 610 9.563748 TGTTGGCATTTTAAGTTACTAGTAAGT 57.436 29.630 15.68 15.79 39.91 2.24
615 616 9.400638 CGATTTTGTTGGCATTTTAAGTTACTA 57.599 29.630 0.00 0.00 0.00 1.82
616 617 7.923878 ACGATTTTGTTGGCATTTTAAGTTACT 59.076 29.630 0.00 0.00 0.00 2.24
617 618 8.067780 ACGATTTTGTTGGCATTTTAAGTTAC 57.932 30.769 0.00 0.00 0.00 2.50
618 619 8.649973 AACGATTTTGTTGGCATTTTAAGTTA 57.350 26.923 0.00 0.00 0.00 2.24
647 648 2.604079 TTCGCGAGGTGGGGGTTA 60.604 61.111 9.59 0.00 0.00 2.85
1011 4366 2.519063 CAGCACAGGTGGTTGCCA 60.519 61.111 0.65 0.00 39.58 4.92
1146 4555 2.951642 ACAAACATCCATTATGCTCCCG 59.048 45.455 0.00 0.00 39.39 5.14
1312 4727 1.203492 AGAGAGGGACCTTGGTTGGAT 60.203 52.381 0.00 0.00 0.00 3.41
1371 4808 2.832129 TCTCCACTCCACGCTTCTATTT 59.168 45.455 0.00 0.00 0.00 1.40
1434 4932 4.373156 AATTACTGCCAGTTTCTCCACT 57.627 40.909 1.02 0.00 0.00 4.00
1443 4941 7.604927 TCAACGAAATAACTAATTACTGCCAGT 59.395 33.333 1.54 1.54 0.00 4.00
1448 4949 8.807397 GTGCTCAACGAAATAACTAATTACTG 57.193 34.615 0.00 0.00 0.00 2.74
1488 5065 6.963322 AGTAGGAAAATAGATGCTTCTGGTT 58.037 36.000 12.19 4.64 33.17 3.67
1500 5345 9.512435 TCGTCGAAAAATAGAGTAGGAAAATAG 57.488 33.333 0.00 0.00 0.00 1.73
1524 5369 3.978217 ACCGTATTTGCACATTTTGTTCG 59.022 39.130 0.00 0.00 0.00 3.95
1849 5761 4.424566 GCGCCGGTGTCGAGGTTA 62.425 66.667 17.91 0.00 39.00 2.85
2398 6310 1.472480 GGTTTGCTTACGATGCATGGT 59.528 47.619 18.72 18.72 40.34 3.55
2552 6469 1.021390 CCGTTGCGCTTCCTGATCTT 61.021 55.000 9.73 0.00 0.00 2.40
2553 6470 1.448540 CCGTTGCGCTTCCTGATCT 60.449 57.895 9.73 0.00 0.00 2.75
2599 6516 1.741732 GCATCTCCTTCGTGCATGAGT 60.742 52.381 8.93 0.00 38.68 3.41
2689 6606 2.594592 GTTGCGAACCCAGCCAGT 60.595 61.111 0.00 0.00 0.00 4.00
2691 6608 4.555709 ACGTTGCGAACCCAGCCA 62.556 61.111 0.00 0.00 0.00 4.75
2972 6897 2.781923 GGCAAAGAAATGGCAAATGGT 58.218 42.857 0.00 0.00 44.66 3.55
2979 6904 1.081094 GCACATGGCAAAGAAATGGC 58.919 50.000 0.00 0.00 45.44 4.40
3010 6935 3.506398 TGACTCATCACACCCTACTCAA 58.494 45.455 0.00 0.00 0.00 3.02
3016 6941 3.072915 TGTCATTTGACTCATCACACCCT 59.927 43.478 11.67 0.00 44.99 4.34
3024 6949 9.234827 TCTTTCATGTTATGTCATTTGACTCAT 57.765 29.630 11.67 8.22 44.99 2.90
3025 6950 8.620116 TCTTTCATGTTATGTCATTTGACTCA 57.380 30.769 11.67 6.59 44.99 3.41
3026 6951 7.695618 GCTCTTTCATGTTATGTCATTTGACTC 59.304 37.037 11.67 1.88 44.99 3.36
3033 6991 6.108687 TCTTCGCTCTTTCATGTTATGTCAT 58.891 36.000 0.00 0.00 0.00 3.06
3070 7107 8.533657 ACATTGAGATCCATGCAAAATTTTCTA 58.466 29.630 0.00 0.00 0.00 2.10
3112 7369 1.542030 ACGAAGTCTCAGTCGATGCTT 59.458 47.619 0.00 0.00 29.74 3.91
3144 7443 3.827625 CAGTCTTGGTAAGTCTCAGTCG 58.172 50.000 0.00 0.00 0.00 4.18
3147 7446 2.600731 CGCAGTCTTGGTAAGTCTCAG 58.399 52.381 0.00 0.00 0.00 3.35
3153 7452 1.337260 ACTCAGCGCAGTCTTGGTAAG 60.337 52.381 11.47 0.00 0.00 2.34
3154 7453 0.679505 ACTCAGCGCAGTCTTGGTAA 59.320 50.000 11.47 0.00 0.00 2.85
3155 7454 0.679505 AACTCAGCGCAGTCTTGGTA 59.320 50.000 11.47 0.00 0.00 3.25
3156 7455 0.679505 TAACTCAGCGCAGTCTTGGT 59.320 50.000 11.47 0.00 0.00 3.67
3157 7456 1.929836 GATAACTCAGCGCAGTCTTGG 59.070 52.381 11.47 0.00 0.00 3.61
3158 7457 2.602211 CAGATAACTCAGCGCAGTCTTG 59.398 50.000 11.47 0.00 0.00 3.02
3159 7458 2.232452 ACAGATAACTCAGCGCAGTCTT 59.768 45.455 11.47 0.00 0.00 3.01
3160 7459 1.821753 ACAGATAACTCAGCGCAGTCT 59.178 47.619 11.47 0.00 0.00 3.24
3161 7460 2.285827 ACAGATAACTCAGCGCAGTC 57.714 50.000 11.47 0.00 0.00 3.51
3162 7461 2.341257 CAACAGATAACTCAGCGCAGT 58.659 47.619 11.47 1.27 0.00 4.40
3163 7462 1.662629 CCAACAGATAACTCAGCGCAG 59.337 52.381 11.47 0.00 0.00 5.18
3164 7463 1.275010 TCCAACAGATAACTCAGCGCA 59.725 47.619 11.47 0.00 0.00 6.09
3165 7464 2.010145 TCCAACAGATAACTCAGCGC 57.990 50.000 0.00 0.00 0.00 5.92
3166 7465 2.286294 GCATCCAACAGATAACTCAGCG 59.714 50.000 0.00 0.00 32.37 5.18
3167 7466 3.539604 AGCATCCAACAGATAACTCAGC 58.460 45.455 0.00 0.00 32.37 4.26
3168 7467 4.763073 TGAGCATCCAACAGATAACTCAG 58.237 43.478 0.00 0.00 40.14 3.35
3211 7510 2.184322 CGGCGCTGGAGCTTCTTA 59.816 61.111 8.83 0.00 39.32 2.10
3229 7528 2.034221 AAGGGAGGTTGCTTCGCC 59.966 61.111 0.00 0.00 0.00 5.54
3230 7529 0.606673 AAGAAGGGAGGTTGCTTCGC 60.607 55.000 0.00 0.00 0.00 4.70
3231 7530 1.897560 AAAGAAGGGAGGTTGCTTCG 58.102 50.000 0.00 0.00 0.00 3.79
3232 7531 3.948473 GGATAAAGAAGGGAGGTTGCTTC 59.052 47.826 0.00 0.00 0.00 3.86
3233 7532 3.593780 AGGATAAAGAAGGGAGGTTGCTT 59.406 43.478 0.00 0.00 0.00 3.91
3266 7786 3.710722 AAGAGGTCCTGGCGGCAG 61.711 66.667 30.63 30.63 0.00 4.85
3362 8055 1.899437 GATGTCTTCCACGCCCAGGA 61.899 60.000 0.00 0.00 0.00 3.86
3377 8070 0.747255 AAGATCCAGCGCTACGATGT 59.253 50.000 20.51 15.08 41.89 3.06
3383 8076 1.699054 ATGGGCAAGATCCAGCGCTA 61.699 55.000 10.99 0.00 43.26 4.26
3385 8078 2.517875 ATGGGCAAGATCCAGCGC 60.518 61.111 14.65 14.65 43.17 5.92
3413 8106 3.175133 GGTTGTGCCCATCTGTAGG 57.825 57.895 0.00 0.00 0.00 3.18
3428 8121 2.683933 AGACGCCAGATCCGGGTT 60.684 61.111 0.00 0.00 0.00 4.11
3466 8159 2.970324 CACCAACACCGTCCCACG 60.970 66.667 0.00 0.00 42.11 4.94
3472 8165 0.106918 AACACATCCACCAACACCGT 60.107 50.000 0.00 0.00 0.00 4.83
3473 8166 1.533731 GTAACACATCCACCAACACCG 59.466 52.381 0.00 0.00 0.00 4.94
3477 8170 2.073816 CCGAGTAACACATCCACCAAC 58.926 52.381 0.00 0.00 0.00 3.77
3490 8183 0.101759 GTATCGTGCTGCCCGAGTAA 59.898 55.000 13.35 0.00 37.81 2.24
3514 8207 4.344865 ACACCGCATCCACCCACC 62.345 66.667 0.00 0.00 0.00 4.61
3516 8209 4.343323 CCACACCGCATCCACCCA 62.343 66.667 0.00 0.00 0.00 4.51
3570 8263 1.069765 CAACAGACTCACACCGCCT 59.930 57.895 0.00 0.00 0.00 5.52
3599 8292 1.302033 CTCTTGCCAGGTTCACGCT 60.302 57.895 0.00 0.00 0.00 5.07
3636 8329 3.245052 CCTTGGGCATAGGATAAGGAAGG 60.245 52.174 0.00 0.00 40.18 3.46
3644 8337 1.149174 CGCACCTTGGGCATAGGAT 59.851 57.895 10.69 0.00 36.58 3.24
3659 8352 4.308458 CCTCAACCACCGTCCGCA 62.308 66.667 0.00 0.00 0.00 5.69
3662 8355 3.607370 GAGCCCTCAACCACCGTCC 62.607 68.421 0.00 0.00 0.00 4.79
3686 8383 2.050350 CCGAGTTCTGGTCCGCCTA 61.050 63.158 0.00 0.00 35.27 3.93
3725 8422 2.584608 CTTACCCACCCTGAGCGG 59.415 66.667 0.00 0.00 0.00 5.52
3731 8428 2.544745 GCCCAACCTTACCCACCCT 61.545 63.158 0.00 0.00 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.