Multiple sequence alignment - TraesCS7B01G285600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G285600 chr7B 100.000 8625 0 0 1 8625 519915615 519906991 0.000000e+00 15928.0
1 TraesCS7B01G285600 chr7A 95.330 5011 124 33 1965 6904 557894755 557889784 0.000000e+00 7856.0
2 TraesCS7B01G285600 chr7A 92.170 728 43 11 1220 1939 557896449 557895728 0.000000e+00 1016.0
3 TraesCS7B01G285600 chr7A 86.753 770 61 19 6918 7675 557889798 557889058 0.000000e+00 819.0
4 TraesCS7B01G285600 chr7A 91.058 548 15 8 8084 8625 557888662 557888143 0.000000e+00 710.0
5 TraesCS7B01G285600 chr7A 88.000 600 26 23 519 1106 557897543 557896978 0.000000e+00 667.0
6 TraesCS7B01G285600 chr7A 93.919 148 9 0 7786 7933 557888956 557888809 3.130000e-54 224.0
7 TraesCS7B01G285600 chr7A 97.500 120 3 0 1 120 532503579 532503698 1.130000e-48 206.0
8 TraesCS7B01G285600 chr7A 82.870 216 33 2 121 332 79551646 79551861 3.180000e-44 191.0
9 TraesCS7B01G285600 chr7A 90.909 77 4 3 8028 8103 557888776 557888702 5.510000e-17 100.0
10 TraesCS7B01G285600 chr7D 88.927 3468 277 60 3510 6904 491268291 491264858 0.000000e+00 4178.0
11 TraesCS7B01G285600 chr7D 93.256 1127 67 3 2301 3427 491269408 491268291 0.000000e+00 1652.0
12 TraesCS7B01G285600 chr7D 85.593 826 57 21 6918 7723 491264872 491264089 0.000000e+00 809.0
13 TraesCS7B01G285600 chr7D 94.444 486 11 3 648 1132 491271356 491270886 0.000000e+00 734.0
14 TraesCS7B01G285600 chr7D 89.965 578 16 12 8069 8625 491263373 491262817 0.000000e+00 708.0
15 TraesCS7B01G285600 chr7D 93.678 348 21 1 1943 2289 491269828 491269481 3.570000e-143 520.0
16 TraesCS7B01G285600 chr7D 93.438 320 21 0 120 439 491298495 491298176 7.830000e-130 475.0
17 TraesCS7B01G285600 chr7D 81.453 647 59 43 1137 1733 491270846 491270211 2.820000e-129 473.0
18 TraesCS7B01G285600 chr7D 90.164 305 17 6 7785 8080 491263856 491263556 1.360000e-102 385.0
19 TraesCS7B01G285600 chr7D 92.708 96 6 1 3413 3508 195626087 195626181 4.200000e-28 137.0
20 TraesCS7B01G285600 chr7D 92.308 65 5 0 437 501 491295992 491295928 9.220000e-15 93.5
21 TraesCS7B01G285600 chr3B 99.153 118 1 0 1 118 780204891 780204774 6.780000e-51 213.0
22 TraesCS7B01G285600 chr3B 98.305 118 2 0 1 118 303241724 303241607 3.160000e-49 207.0
23 TraesCS7B01G285600 chr5A 98.305 118 2 0 1 118 373197500 373197383 3.160000e-49 207.0
24 TraesCS7B01G285600 chr5A 91.753 97 6 2 3421 3517 622999426 622999332 5.430000e-27 134.0
25 TraesCS7B01G285600 chr4D 99.130 115 1 0 1 115 318270809 318270923 3.160000e-49 207.0
26 TraesCS7B01G285600 chr4A 99.130 115 1 0 1 115 64288231 64288345 3.160000e-49 207.0
27 TraesCS7B01G285600 chr4A 91.667 96 6 2 3425 3518 387086543 387086448 1.950000e-26 132.0
28 TraesCS7B01G285600 chr3A 98.305 118 2 0 1 118 479287404 479287287 3.160000e-49 207.0
29 TraesCS7B01G285600 chr4B 97.500 120 3 0 1 120 341151336 341151217 1.130000e-48 206.0
30 TraesCS7B01G285600 chr2B 96.032 126 5 0 1 126 589331735 589331610 1.130000e-48 206.0
31 TraesCS7B01G285600 chr6B 94.505 91 3 2 3419 3508 13827520 13827609 1.170000e-28 139.0
32 TraesCS7B01G285600 chr6B 92.683 41 3 0 213 253 500644894 500644934 9.350000e-05 60.2
33 TraesCS7B01G285600 chr2D 96.471 85 2 1 3424 3508 435047484 435047567 1.170000e-28 139.0
34 TraesCS7B01G285600 chr2D 80.488 82 16 0 213 294 446961633 446961552 7.230000e-06 63.9
35 TraesCS7B01G285600 chr2D 81.579 76 14 0 219 294 485841155 485841080 7.230000e-06 63.9
36 TraesCS7B01G285600 chr2D 96.970 33 0 1 216 247 458152006 458152038 4.000000e-03 54.7
37 TraesCS7B01G285600 chr6D 94.318 88 5 0 3421 3508 427344851 427344938 1.510000e-27 135.0
38 TraesCS7B01G285600 chr2A 93.407 91 6 0 3425 3515 51498639 51498549 1.510000e-27 135.0
39 TraesCS7B01G285600 chr1D 93.478 92 4 1 3424 3515 64145524 64145435 1.510000e-27 135.0
40 TraesCS7B01G285600 chr5B 97.727 44 1 0 2866 2909 708393031 708392988 9.280000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G285600 chr7B 519906991 519915615 8624 True 15928.000000 15928 100.000000 1 8625 1 chr7B.!!$R1 8624
1 TraesCS7B01G285600 chr7A 557888143 557897543 9400 True 1627.428571 7856 91.162714 519 8625 7 chr7A.!!$R1 8106
2 TraesCS7B01G285600 chr7D 491262817 491271356 8539 True 1182.375000 4178 89.685000 648 8625 8 chr7D.!!$R1 7977
3 TraesCS7B01G285600 chr7D 491295928 491298495 2567 True 284.250000 475 92.873000 120 501 2 chr7D.!!$R2 381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 2809 0.034059 CCTCATGACCCAGCGGATAC 59.966 60.000 0.00 0.0 0.00 2.24 F
1268 3907 0.393077 CCGGGTGAACTCTGAACTGT 59.607 55.000 0.00 0.0 0.00 3.55 F
1694 4407 0.679505 TCCTGGTTGTCTTCCTGTCG 59.320 55.000 0.00 0.0 0.00 4.35 F
2018 5909 1.269448 ACAACCGTGCAGGCATTAAAG 59.731 47.619 0.00 0.0 46.52 1.85 F
3647 7621 1.643286 TCCTGTCCAGAGTCTCCAGAT 59.357 52.381 11.00 0.0 0.00 2.90 F
4332 8312 0.897621 CCTGTTCCATTGGCCCTTTC 59.102 55.000 0.00 0.0 0.00 2.62 F
4543 8524 0.611896 CGGGGGATTTTGGAAGCAGT 60.612 55.000 0.00 0.0 0.00 4.40 F
5116 9108 0.995024 ATCAGCAGCTGGGTTTAGGT 59.005 50.000 22.62 0.0 31.51 3.08 F
6544 10599 0.037326 CTCACGCTTTCACCTAGGCA 60.037 55.000 9.30 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 4184 2.080286 TGCTAGCGAAGGAGTGTTTC 57.920 50.000 10.77 0.00 0.00 2.78 R
2714 6670 1.539827 ACGCCACTTTACATTGCTTCC 59.460 47.619 0.00 0.00 0.00 3.46 R
3590 7564 2.499289 ACTGCACACACCCATTCAAAAA 59.501 40.909 0.00 0.00 0.00 1.94 R
3744 7718 4.151070 GCATCGTGTGTAATTTGTGAGTG 58.849 43.478 0.00 0.00 0.00 3.51 R
4543 8524 0.111061 ATCCAGCTCACAACAGCCAA 59.889 50.000 0.00 0.00 40.65 4.52 R
5161 9153 3.150848 TGATCATGTCGTACTGCAGTC 57.849 47.619 25.56 14.02 0.00 3.51 R
6526 10581 0.613260 ATGCCTAGGTGAAAGCGTGA 59.387 50.000 11.31 0.00 40.95 4.35 R
6565 10620 0.252467 AGTTAGCTCCAGCAGGACCT 60.252 55.000 0.48 0.00 45.16 3.85 R
8324 12873 0.449388 GAAGCTTCACTCCATTGGCG 59.551 55.000 21.67 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.689083 TGTTATTCTGCGGCGATGG 58.311 52.632 12.98 0.00 0.00 3.51
19 20 1.279840 GTTATTCTGCGGCGATGGC 59.720 57.895 12.98 0.00 38.90 4.40
20 21 1.153269 TTATTCTGCGGCGATGGCA 60.153 52.632 12.98 0.00 42.47 4.92
39 40 2.664851 CGCAGCCGAACCAGTGAA 60.665 61.111 0.00 0.00 36.29 3.18
40 41 2.946762 GCAGCCGAACCAGTGAAC 59.053 61.111 0.00 0.00 0.00 3.18
41 42 2.617274 GCAGCCGAACCAGTGAACC 61.617 63.158 0.00 0.00 0.00 3.62
42 43 1.966451 CAGCCGAACCAGTGAACCC 60.966 63.158 0.00 0.00 0.00 4.11
43 44 2.147387 AGCCGAACCAGTGAACCCT 61.147 57.895 0.00 0.00 0.00 4.34
44 45 1.671379 GCCGAACCAGTGAACCCTC 60.671 63.158 0.00 0.00 0.00 4.30
45 46 1.374252 CCGAACCAGTGAACCCTCG 60.374 63.158 0.00 0.00 0.00 4.63
46 47 1.366366 CGAACCAGTGAACCCTCGT 59.634 57.895 0.00 0.00 0.00 4.18
47 48 0.599558 CGAACCAGTGAACCCTCGTA 59.400 55.000 0.00 0.00 0.00 3.43
48 49 1.668047 CGAACCAGTGAACCCTCGTAC 60.668 57.143 0.00 0.00 0.00 3.67
49 50 1.617357 GAACCAGTGAACCCTCGTACT 59.383 52.381 0.00 0.00 0.00 2.73
50 51 1.254954 ACCAGTGAACCCTCGTACTC 58.745 55.000 0.00 0.00 0.00 2.59
51 52 0.531200 CCAGTGAACCCTCGTACTCC 59.469 60.000 0.00 0.00 0.00 3.85
52 53 1.546961 CAGTGAACCCTCGTACTCCT 58.453 55.000 0.00 0.00 0.00 3.69
53 54 1.473278 CAGTGAACCCTCGTACTCCTC 59.527 57.143 0.00 0.00 0.00 3.71
54 55 1.355043 AGTGAACCCTCGTACTCCTCT 59.645 52.381 0.00 0.00 0.00 3.69
55 56 1.744522 GTGAACCCTCGTACTCCTCTC 59.255 57.143 0.00 0.00 0.00 3.20
56 57 1.340795 TGAACCCTCGTACTCCTCTCC 60.341 57.143 0.00 0.00 0.00 3.71
57 58 0.394080 AACCCTCGTACTCCTCTCCG 60.394 60.000 0.00 0.00 0.00 4.63
58 59 2.188161 CCCTCGTACTCCTCTCCGC 61.188 68.421 0.00 0.00 0.00 5.54
59 60 2.535788 CCTCGTACTCCTCTCCGCG 61.536 68.421 0.00 0.00 0.00 6.46
60 61 1.814586 CTCGTACTCCTCTCCGCGT 60.815 63.158 4.92 0.00 0.00 6.01
61 62 2.037913 CTCGTACTCCTCTCCGCGTG 62.038 65.000 4.92 0.00 0.00 5.34
62 63 2.799371 GTACTCCTCTCCGCGTGG 59.201 66.667 9.28 9.28 0.00 4.94
63 64 2.439701 TACTCCTCTCCGCGTGGG 60.440 66.667 16.49 6.14 35.24 4.61
67 68 4.899239 CCTCTCCGCGTGGGCATC 62.899 72.222 16.49 0.00 39.92 3.91
68 69 4.899239 CTCTCCGCGTGGGCATCC 62.899 72.222 16.49 0.00 39.92 3.51
81 82 2.434884 CATCCACTGCCGCGTCTT 60.435 61.111 4.92 0.00 0.00 3.01
82 83 2.125512 ATCCACTGCCGCGTCTTC 60.126 61.111 4.92 0.00 0.00 2.87
83 84 3.665675 ATCCACTGCCGCGTCTTCC 62.666 63.158 4.92 0.00 0.00 3.46
94 95 4.452733 GTCTTCCCCGGCTCCGTG 62.453 72.222 7.59 0.00 37.81 4.94
96 97 4.452733 CTTCCCCGGCTCCGTGTC 62.453 72.222 7.59 0.00 37.81 3.67
104 105 3.692406 GCTCCGTGTCGTCCCCTT 61.692 66.667 0.00 0.00 0.00 3.95
105 106 2.572284 CTCCGTGTCGTCCCCTTC 59.428 66.667 0.00 0.00 0.00 3.46
106 107 2.993264 TCCGTGTCGTCCCCTTCC 60.993 66.667 0.00 0.00 0.00 3.46
107 108 2.995574 CCGTGTCGTCCCCTTCCT 60.996 66.667 0.00 0.00 0.00 3.36
108 109 1.679977 CCGTGTCGTCCCCTTCCTA 60.680 63.158 0.00 0.00 0.00 2.94
109 110 1.664321 CCGTGTCGTCCCCTTCCTAG 61.664 65.000 0.00 0.00 0.00 3.02
110 111 1.664321 CGTGTCGTCCCCTTCCTAGG 61.664 65.000 0.82 0.82 41.60 3.02
111 112 1.684734 TGTCGTCCCCTTCCTAGGC 60.685 63.158 2.96 0.00 40.50 3.93
112 113 2.042230 TCGTCCCCTTCCTAGGCC 60.042 66.667 2.96 0.00 40.50 5.19
113 114 2.041819 CGTCCCCTTCCTAGGCCT 60.042 66.667 11.78 11.78 40.50 5.19
114 115 2.134933 CGTCCCCTTCCTAGGCCTC 61.135 68.421 9.68 0.00 40.50 4.70
115 116 1.315216 GTCCCCTTCCTAGGCCTCT 59.685 63.158 9.68 0.00 40.50 3.69
116 117 0.761323 GTCCCCTTCCTAGGCCTCTC 60.761 65.000 9.68 0.00 40.50 3.20
117 118 1.460497 CCCCTTCCTAGGCCTCTCC 60.460 68.421 9.68 0.00 40.50 3.71
118 119 1.314867 CCCTTCCTAGGCCTCTCCA 59.685 63.158 9.68 0.00 40.50 3.86
221 222 3.122613 GTGCTCAACGAGTTCTTCATCAG 59.877 47.826 0.00 0.00 31.39 2.90
245 246 2.867855 GCCCAGACACACCTCGACA 61.868 63.158 0.00 0.00 0.00 4.35
282 283 2.581216 TAGTGTCTCCACGAGTCCTT 57.419 50.000 0.00 0.00 46.56 3.36
285 286 0.959553 TGTCTCCACGAGTCCTTCAC 59.040 55.000 0.00 0.00 0.00 3.18
298 299 1.557371 TCCTTCACACCACACAACTGA 59.443 47.619 0.00 0.00 0.00 3.41
307 308 0.436150 CACACAACTGACAGCGATCG 59.564 55.000 11.69 11.69 0.00 3.69
312 313 2.668457 ACAACTGACAGCGATCGAAATC 59.332 45.455 21.57 12.33 0.00 2.17
355 356 4.572389 CGGACATCTTCAAAGGGTATTGAG 59.428 45.833 0.00 0.00 40.21 3.02
357 358 5.355350 GGACATCTTCAAAGGGTATTGAGTG 59.645 44.000 0.00 0.00 40.21 3.51
380 381 2.014068 GCGCTAGCCTCCACAGAAAAT 61.014 52.381 9.66 0.00 37.42 1.82
383 384 2.159324 GCTAGCCTCCACAGAAAATTGC 60.159 50.000 2.29 0.00 0.00 3.56
391 392 3.383185 TCCACAGAAAATTGCGAACCTTT 59.617 39.130 0.00 0.00 0.00 3.11
393 394 4.499696 CCACAGAAAATTGCGAACCTTTCT 60.500 41.667 0.00 4.12 38.37 2.52
395 396 5.043248 ACAGAAAATTGCGAACCTTTCTTG 58.957 37.500 6.39 5.85 36.28 3.02
396 397 4.445385 CAGAAAATTGCGAACCTTTCTTGG 59.555 41.667 6.39 0.00 36.28 3.61
399 400 3.923017 ATTGCGAACCTTTCTTGGAAG 57.077 42.857 0.00 0.00 0.00 3.46
410 411 4.889995 CCTTTCTTGGAAGGTCAACTTTCT 59.110 41.667 5.18 0.00 41.06 2.52
426 427 7.226720 GTCAACTTTCTACAAAGAACTCCATGA 59.773 37.037 0.00 0.00 41.48 3.07
427 428 7.226720 TCAACTTTCTACAAAGAACTCCATGAC 59.773 37.037 0.00 0.00 41.48 3.06
439 440 4.323569 ACTCCATGACTTCTCCTCTACA 57.676 45.455 0.00 0.00 0.00 2.74
440 441 4.277476 ACTCCATGACTTCTCCTCTACAG 58.723 47.826 0.00 0.00 0.00 2.74
452 2639 7.502226 ACTTCTCCTCTACAGTATGATCTGAAG 59.498 40.741 0.00 0.00 39.69 3.02
456 2643 5.242838 CCTCTACAGTATGATCTGAAGGACC 59.757 48.000 0.00 0.00 39.69 4.46
459 2646 3.708631 ACAGTATGATCTGAAGGACCTGG 59.291 47.826 0.00 0.00 39.69 4.45
494 2681 4.252073 CCAATTCTCTCTTCTGACCACAG 58.748 47.826 0.00 0.00 44.66 3.66
504 2691 1.971357 TCTGACCACAGAGAAACTCCC 59.029 52.381 0.00 0.00 46.55 4.30
505 2692 0.679505 TGACCACAGAGAAACTCCCG 59.320 55.000 0.00 0.00 0.00 5.14
506 2693 0.680061 GACCACAGAGAAACTCCCGT 59.320 55.000 0.00 0.00 0.00 5.28
507 2694 1.891150 GACCACAGAGAAACTCCCGTA 59.109 52.381 0.00 0.00 0.00 4.02
508 2695 2.496470 GACCACAGAGAAACTCCCGTAT 59.504 50.000 0.00 0.00 0.00 3.06
509 2696 2.496470 ACCACAGAGAAACTCCCGTATC 59.504 50.000 0.00 0.00 0.00 2.24
510 2697 2.159085 CCACAGAGAAACTCCCGTATCC 60.159 54.545 0.00 0.00 0.00 2.59
511 2698 2.108970 ACAGAGAAACTCCCGTATCCC 58.891 52.381 0.00 0.00 0.00 3.85
512 2699 2.292323 ACAGAGAAACTCCCGTATCCCT 60.292 50.000 0.00 0.00 0.00 4.20
513 2700 2.766828 CAGAGAAACTCCCGTATCCCTT 59.233 50.000 0.00 0.00 0.00 3.95
514 2701 3.958798 CAGAGAAACTCCCGTATCCCTTA 59.041 47.826 0.00 0.00 0.00 2.69
515 2702 4.404715 CAGAGAAACTCCCGTATCCCTTAA 59.595 45.833 0.00 0.00 0.00 1.85
516 2703 5.070580 CAGAGAAACTCCCGTATCCCTTAAT 59.929 44.000 0.00 0.00 0.00 1.40
517 2704 5.666265 AGAGAAACTCCCGTATCCCTTAATT 59.334 40.000 0.00 0.00 0.00 1.40
563 2750 4.666397 TGTGCGGCGGCTCGTTTA 62.666 61.111 17.76 0.00 40.82 2.01
564 2751 3.192922 GTGCGGCGGCTCGTTTAT 61.193 61.111 17.76 0.00 40.82 1.40
565 2752 3.192230 TGCGGCGGCTCGTTTATG 61.192 61.111 17.76 0.00 40.82 1.90
567 2754 2.510691 CGGCGGCTCGTTTATGGT 60.511 61.111 7.61 0.00 0.00 3.55
568 2755 2.808958 CGGCGGCTCGTTTATGGTG 61.809 63.158 7.61 0.00 0.00 4.17
571 2758 2.469516 CGGCTCGTTTATGGTGGGC 61.470 63.158 0.00 0.00 0.00 5.36
573 2760 2.469516 GCTCGTTTATGGTGGGCCG 61.470 63.158 0.00 0.00 37.67 6.13
576 2763 3.144871 GTTTATGGTGGGCCGGGC 61.145 66.667 22.00 22.00 37.67 6.13
596 2790 4.892965 TGCCGGCCCATGGTATGC 62.893 66.667 26.77 6.98 0.00 3.14
601 2795 1.462035 GGCCCATGGTATGCCTCAT 59.538 57.895 20.00 0.00 42.01 2.90
612 2806 3.785859 GCCTCATGACCCAGCGGA 61.786 66.667 0.00 0.00 0.00 5.54
614 2808 1.758440 GCCTCATGACCCAGCGGATA 61.758 60.000 0.00 0.00 0.00 2.59
615 2809 0.034059 CCTCATGACCCAGCGGATAC 59.966 60.000 0.00 0.00 0.00 2.24
663 2857 1.189524 AAGGAATGGACCGTCCGTCA 61.190 55.000 12.87 0.00 43.95 4.35
718 2919 2.100991 CGGCCGAAGCAAAGCATC 59.899 61.111 24.07 0.00 42.56 3.91
878 3080 1.077429 ATTCCTTCCTTGCCGCTCC 60.077 57.895 0.00 0.00 0.00 4.70
879 3081 2.558380 ATTCCTTCCTTGCCGCTCCC 62.558 60.000 0.00 0.00 0.00 4.30
958 3162 4.684134 ATGGTTGCCAAGCCGCCT 62.684 61.111 3.89 0.00 36.95 5.52
1132 3337 3.003763 GCTTCCCCCTCCGACACT 61.004 66.667 0.00 0.00 0.00 3.55
1133 3338 2.593956 GCTTCCCCCTCCGACACTT 61.594 63.158 0.00 0.00 0.00 3.16
1134 3339 1.262640 GCTTCCCCCTCCGACACTTA 61.263 60.000 0.00 0.00 0.00 2.24
1135 3340 1.272807 CTTCCCCCTCCGACACTTAA 58.727 55.000 0.00 0.00 0.00 1.85
1141 3702 4.475747 TCCCCCTCCGACACTTAATATTTT 59.524 41.667 0.00 0.00 0.00 1.82
1161 3722 3.546002 TTTTTACATTCCGCGGACAAG 57.454 42.857 31.19 22.41 0.00 3.16
1171 3732 1.404391 CCGCGGACAAGTCAGTACTAT 59.596 52.381 24.07 0.00 33.75 2.12
1172 3733 2.615447 CCGCGGACAAGTCAGTACTATA 59.385 50.000 24.07 0.00 33.75 1.31
1173 3734 3.252701 CCGCGGACAAGTCAGTACTATAT 59.747 47.826 24.07 0.00 33.75 0.86
1174 3735 4.219802 CGCGGACAAGTCAGTACTATATG 58.780 47.826 0.00 0.00 33.75 1.78
1198 3766 2.892334 GCGCTCGTTGGTTGCTTGA 61.892 57.895 0.00 0.00 0.00 3.02
1212 3780 1.338674 TGCTTGATTCGACCGTGGAAT 60.339 47.619 8.37 8.37 36.85 3.01
1226 3794 4.882671 CGTGGAATCAGGGAAAATGTAG 57.117 45.455 0.00 0.00 0.00 2.74
1260 3898 0.608035 TGGCAATTCCGGGTGAACTC 60.608 55.000 0.00 0.00 35.31 3.01
1263 3902 1.610624 GCAATTCCGGGTGAACTCTGA 60.611 52.381 0.00 0.00 35.31 3.27
1264 3903 2.778299 CAATTCCGGGTGAACTCTGAA 58.222 47.619 0.00 0.00 35.31 3.02
1265 3904 2.474410 ATTCCGGGTGAACTCTGAAC 57.526 50.000 0.00 0.00 35.31 3.18
1266 3905 1.420430 TTCCGGGTGAACTCTGAACT 58.580 50.000 0.00 0.00 0.00 3.01
1267 3906 0.679505 TCCGGGTGAACTCTGAACTG 59.320 55.000 0.00 0.00 0.00 3.16
1268 3907 0.393077 CCGGGTGAACTCTGAACTGT 59.607 55.000 0.00 0.00 0.00 3.55
1269 3908 1.502231 CGGGTGAACTCTGAACTGTG 58.498 55.000 0.00 0.00 0.00 3.66
1270 3909 1.873903 CGGGTGAACTCTGAACTGTGG 60.874 57.143 0.00 0.00 0.00 4.17
1422 4070 3.128242 CCTCTCTATGCTGCAACTTTTGG 59.872 47.826 6.36 2.03 0.00 3.28
1440 4088 6.204882 ACTTTTGGCACTGTACTTAGAATGAC 59.795 38.462 0.00 0.00 0.00 3.06
1509 4182 7.852454 CACATATTCATGTTCCACAATTCTACG 59.148 37.037 0.00 0.00 42.98 3.51
1511 4184 6.668541 ATTCATGTTCCACAATTCTACGAG 57.331 37.500 0.00 0.00 0.00 4.18
1538 4214 3.118629 ACTCCTTCGCTAGCATCATCAAA 60.119 43.478 16.45 0.00 0.00 2.69
1592 4268 4.510571 GTGTAATACTTTCCATGGTCCGT 58.489 43.478 12.58 9.46 0.00 4.69
1599 4275 2.577606 TTCCATGGTCCGTGACATTT 57.422 45.000 12.58 0.00 33.68 2.32
1694 4407 0.679505 TCCTGGTTGTCTTCCTGTCG 59.320 55.000 0.00 0.00 0.00 4.35
1798 4740 3.707102 ACTTCTAAGGGTGCTACCATCTC 59.293 47.826 7.49 0.00 41.02 2.75
1879 4823 4.019174 CAGGCAATCCATGTTAAGGTCTT 58.981 43.478 0.00 0.00 33.74 3.01
1906 4850 8.635765 ACACAGGATTTAATACTCAACAACAT 57.364 30.769 0.00 0.00 0.00 2.71
1939 4883 7.554835 TCCTTTAACTTGCTTTTGAAGTCAGTA 59.445 33.333 0.00 0.00 32.33 2.74
1940 4884 7.857885 CCTTTAACTTGCTTTTGAAGTCAGTAG 59.142 37.037 0.00 0.00 32.33 2.57
1942 4886 5.993106 ACTTGCTTTTGAAGTCAGTAGTC 57.007 39.130 0.00 0.00 0.00 2.59
1943 4887 5.428253 ACTTGCTTTTGAAGTCAGTAGTCA 58.572 37.500 0.00 0.00 0.00 3.41
1944 4888 5.880332 ACTTGCTTTTGAAGTCAGTAGTCAA 59.120 36.000 0.00 0.00 0.00 3.18
1946 4890 5.182487 TGCTTTTGAAGTCAGTAGTCAACA 58.818 37.500 0.00 0.00 31.21 3.33
1972 5863 6.594744 TGCTAAGAAGAGATGCCAATGATTA 58.405 36.000 0.00 0.00 0.00 1.75
2018 5909 1.269448 ACAACCGTGCAGGCATTAAAG 59.731 47.619 0.00 0.00 46.52 1.85
2388 6344 5.049818 GGTTCAATGACTACATATGCAGAGC 60.050 44.000 10.02 2.38 35.50 4.09
2733 6689 1.812571 AGGAAGCAATGTAAAGTGGCG 59.187 47.619 0.00 0.00 0.00 5.69
3002 6958 3.930848 CGACAAACTTACTCCCGCTAAAT 59.069 43.478 0.00 0.00 0.00 1.40
3008 6964 5.892160 ACTTACTCCCGCTAAATTTTTCC 57.108 39.130 0.00 0.00 0.00 3.13
3340 7296 3.060602 GCTTCTACGCAGTTCTTCAAGT 58.939 45.455 0.00 0.00 37.78 3.16
3363 7321 2.949644 GTTTGTACTGGTTCTTGCCTGT 59.050 45.455 0.00 0.00 42.22 4.00
3364 7322 2.254546 TGTACTGGTTCTTGCCTGTG 57.745 50.000 0.00 0.00 40.25 3.66
3365 7323 1.765904 TGTACTGGTTCTTGCCTGTGA 59.234 47.619 0.00 0.00 40.25 3.58
3508 7482 7.723324 TCTTATATTTCTTTACGGAGGGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
3647 7621 1.643286 TCCTGTCCAGAGTCTCCAGAT 59.357 52.381 11.00 0.00 0.00 2.90
3766 7740 4.084066 TCACTCACAAATTACACACGATGC 60.084 41.667 0.00 0.00 0.00 3.91
4162 8137 3.725895 CGATCGGTCAAATTCTGCAACAG 60.726 47.826 7.38 0.00 0.00 3.16
4296 8271 1.264749 ACTGGCTCCTAATGGCGTCA 61.265 55.000 0.00 0.00 31.23 4.35
4332 8312 0.897621 CCTGTTCCATTGGCCCTTTC 59.102 55.000 0.00 0.00 0.00 2.62
4337 8317 2.449312 CATTGGCCCTTTCCCCCA 59.551 61.111 0.00 0.00 0.00 4.96
4430 8411 7.461182 TTTGTTTTCTTTCTGGAGAAACAGA 57.539 32.000 0.00 0.00 43.32 3.41
4543 8524 0.611896 CGGGGGATTTTGGAAGCAGT 60.612 55.000 0.00 0.00 0.00 4.40
4727 8709 2.233654 GCATGCAGTAGCCTCGACG 61.234 63.158 14.21 0.00 41.13 5.12
4796 8779 8.764558 AGTAAATTTGACCAAGGTTTTTAAGGT 58.235 29.630 0.00 0.00 34.76 3.50
5116 9108 0.995024 ATCAGCAGCTGGGTTTAGGT 59.005 50.000 22.62 0.00 31.51 3.08
5377 9370 5.292834 TGTTAGTCTATCTACGACTTGACCG 59.707 44.000 0.00 0.00 41.62 4.79
5885 9881 3.864921 GCAGCTATAATCCCCGGTAACTG 60.865 52.174 0.00 0.00 0.00 3.16
5940 9937 5.061920 ACTCTTAACCAGTCGAATCTGAC 57.938 43.478 4.68 0.00 37.61 3.51
5978 9998 6.925165 CCAAGCACTTGACTGTTGATTAAATT 59.075 34.615 11.94 0.00 42.93 1.82
5979 9999 7.439056 CCAAGCACTTGACTGTTGATTAAATTT 59.561 33.333 11.94 0.00 42.93 1.82
5980 10000 8.819974 CAAGCACTTGACTGTTGATTAAATTTT 58.180 29.630 4.31 0.00 42.93 1.82
5988 10008 8.924691 TGACTGTTGATTAAATTTTAAGCATGC 58.075 29.630 17.71 10.51 0.00 4.06
5989 10009 9.143631 GACTGTTGATTAAATTTTAAGCATGCT 57.856 29.630 16.30 16.30 0.00 3.79
5990 10010 9.492973 ACTGTTGATTAAATTTTAAGCATGCTT 57.507 25.926 33.70 33.70 39.83 3.91
5991 10011 9.962759 CTGTTGATTAAATTTTAAGCATGCTTC 57.037 29.630 35.10 17.78 37.47 3.86
5992 10012 9.486497 TGTTGATTAAATTTTAAGCATGCTTCA 57.514 25.926 35.10 22.98 37.47 3.02
6000 10020 9.880157 AAATTTTAAGCATGCTTCATATCAGTT 57.120 25.926 35.10 16.54 37.47 3.16
6056 10084 7.170828 CCATTTGTTGATCAGGATATGCATTTG 59.829 37.037 3.54 0.00 0.00 2.32
6174 10205 2.432510 AGTATTCCTCTGCTACACTGCC 59.567 50.000 0.00 0.00 0.00 4.85
6184 10215 2.275318 GCTACACTGCCTCTGTTCATC 58.725 52.381 0.00 0.00 0.00 2.92
6198 10229 7.120432 GCCTCTGTTCATCCAAATATCCTATTC 59.880 40.741 0.00 0.00 0.00 1.75
6318 10372 2.419057 GCTCCTGCTTGTTGTTGGT 58.581 52.632 0.00 0.00 36.03 3.67
6357 10411 9.416794 CACATTATTACTCGATTAGCTCAAGAT 57.583 33.333 0.00 0.00 0.00 2.40
6379 10433 2.350868 GCAGCAGCATCATTAGCAGATG 60.351 50.000 0.00 0.00 44.38 2.90
6405 10459 7.527568 AACAAACCAAGTCCCGAATATAAAA 57.472 32.000 0.00 0.00 0.00 1.52
6523 10577 4.344102 TCTTCTGGGTCTTGGTATAATCCG 59.656 45.833 0.00 0.00 0.00 4.18
6526 10581 3.641906 CTGGGTCTTGGTATAATCCGTCT 59.358 47.826 0.00 0.00 0.00 4.18
6533 10588 2.691526 TGGTATAATCCGTCTCACGCTT 59.308 45.455 0.00 0.00 40.91 4.68
6541 10596 1.618861 CGTCTCACGCTTTCACCTAG 58.381 55.000 0.00 0.00 33.65 3.02
6542 10597 1.732732 CGTCTCACGCTTTCACCTAGG 60.733 57.143 7.41 7.41 33.65 3.02
6544 10599 0.037326 CTCACGCTTTCACCTAGGCA 60.037 55.000 9.30 0.00 0.00 4.75
6545 10600 0.613260 TCACGCTTTCACCTAGGCAT 59.387 50.000 9.30 0.00 0.00 4.40
6546 10601 1.003118 TCACGCTTTCACCTAGGCATT 59.997 47.619 9.30 0.00 0.00 3.56
6547 10602 1.812571 CACGCTTTCACCTAGGCATTT 59.187 47.619 9.30 0.00 0.00 2.32
6548 10603 2.084546 ACGCTTTCACCTAGGCATTTC 58.915 47.619 9.30 0.00 0.00 2.17
6549 10604 2.083774 CGCTTTCACCTAGGCATTTCA 58.916 47.619 9.30 0.00 0.00 2.69
6550 10605 2.487762 CGCTTTCACCTAGGCATTTCAA 59.512 45.455 9.30 0.00 0.00 2.69
6551 10606 3.057596 CGCTTTCACCTAGGCATTTCAAA 60.058 43.478 9.30 0.00 0.00 2.69
6552 10607 4.380867 CGCTTTCACCTAGGCATTTCAAAT 60.381 41.667 9.30 0.00 0.00 2.32
6553 10608 4.866486 GCTTTCACCTAGGCATTTCAAATG 59.134 41.667 9.30 5.68 0.00 2.32
6554 10609 5.567423 GCTTTCACCTAGGCATTTCAAATGT 60.567 40.000 9.30 0.00 0.00 2.71
6556 10611 6.418057 TTCACCTAGGCATTTCAAATGTTT 57.582 33.333 9.30 3.30 0.00 2.83
6557 10612 5.782047 TCACCTAGGCATTTCAAATGTTTG 58.218 37.500 9.30 0.00 39.48 2.93
6558 10613 5.304101 TCACCTAGGCATTTCAAATGTTTGT 59.696 36.000 9.30 0.55 39.18 2.83
6561 10616 7.489113 CACCTAGGCATTTCAAATGTTTGTATC 59.511 37.037 9.30 0.00 39.18 2.24
6563 10618 8.199449 CCTAGGCATTTCAAATGTTTGTATCAT 58.801 33.333 11.80 0.00 39.18 2.45
6564 10619 9.590451 CTAGGCATTTCAAATGTTTGTATCATT 57.410 29.630 11.80 0.00 39.18 2.57
6566 10621 9.590451 AGGCATTTCAAATGTTTGTATCATTAG 57.410 29.630 11.80 0.00 39.18 1.73
6567 10622 8.819974 GGCATTTCAAATGTTTGTATCATTAGG 58.180 33.333 11.80 0.00 39.18 2.69
6568 10623 9.369904 GCATTTCAAATGTTTGTATCATTAGGT 57.630 29.630 11.80 0.00 39.18 3.08
6571 10626 8.877864 TTCAAATGTTTGTATCATTAGGTCCT 57.122 30.769 0.00 0.00 39.18 3.85
6572 10627 8.279970 TCAAATGTTTGTATCATTAGGTCCTG 57.720 34.615 0.00 0.00 39.18 3.86
6596 10651 5.064071 GCTGGAGCTAACTAACAAAGTCATC 59.936 44.000 0.00 0.00 36.18 2.92
6627 10682 4.755123 CAGGTAACATATGGGTTCGATTCC 59.245 45.833 7.80 0.00 41.41 3.01
6691 10746 6.435904 TGTTATTGGGTCAGTAAAATTCAGGG 59.564 38.462 0.00 0.00 0.00 4.45
6694 10749 5.586155 TGGGTCAGTAAAATTCAGGGTTA 57.414 39.130 0.00 0.00 0.00 2.85
6708 10763 5.255397 TCAGGGTTACCATTTGTTCTCAT 57.745 39.130 2.98 0.00 40.13 2.90
6715 10770 7.040409 GGGTTACCATTTGTTCTCATGGATATC 60.040 40.741 2.98 0.00 37.60 1.63
6719 10774 5.410746 CCATTTGTTCTCATGGATATCTCGG 59.589 44.000 2.05 0.00 36.31 4.63
6722 10777 2.900546 GTTCTCATGGATATCTCGGGGT 59.099 50.000 2.05 0.00 0.00 4.95
6724 10779 1.827969 CTCATGGATATCTCGGGGTCC 59.172 57.143 2.05 0.00 0.00 4.46
6732 10787 2.296073 ATCTCGGGGTCCTCTCATAC 57.704 55.000 0.00 0.00 0.00 2.39
6734 10789 1.499438 TCTCGGGGTCCTCTCATACAT 59.501 52.381 0.00 0.00 0.00 2.29
6735 10790 1.615883 CTCGGGGTCCTCTCATACATG 59.384 57.143 0.00 0.00 0.00 3.21
6736 10791 1.216930 TCGGGGTCCTCTCATACATGA 59.783 52.381 0.00 0.00 35.16 3.07
6776 10858 5.629020 TGCGTTTTAAGAATGATTTCTGTGC 59.371 36.000 0.00 0.00 41.42 4.57
6778 10860 6.032880 GCGTTTTAAGAATGATTTCTGTGCTC 59.967 38.462 0.00 0.00 41.42 4.26
6859 10941 0.668401 CGTCACCCACGTAAACTCCC 60.668 60.000 0.00 0.00 44.07 4.30
6868 10950 4.814771 CCCACGTAAACTCCCTGAAATATC 59.185 45.833 0.00 0.00 0.00 1.63
6870 10952 4.506654 CACGTAAACTCCCTGAAATATCCG 59.493 45.833 0.00 0.00 0.00 4.18
6871 10953 4.056050 CGTAAACTCCCTGAAATATCCGG 58.944 47.826 0.00 0.00 0.00 5.14
6963 11046 1.341285 TGATTCTGTTGGGCCAGATGG 60.341 52.381 6.23 0.00 40.96 3.51
7004 11087 2.122813 CTAGGGTCGGGCCTCCAT 60.123 66.667 0.84 10.99 37.43 3.41
7013 11096 2.501610 GGCCTCCATGAGTCCGTC 59.498 66.667 0.00 0.00 0.00 4.79
7019 11102 1.874019 CCATGAGTCCGTCGCGAAG 60.874 63.158 12.06 14.02 0.00 3.79
7094 11177 3.330267 GAACTCGCTCACCTTGAAGAAT 58.670 45.455 0.00 0.00 0.00 2.40
7097 11180 3.511934 ACTCGCTCACCTTGAAGAATACT 59.488 43.478 0.00 0.00 0.00 2.12
7106 11189 0.392461 TGAAGAATACTGGCGCCACC 60.392 55.000 29.03 12.29 39.84 4.61
7130 11213 3.414700 GTCACCGGCAGCAACGAG 61.415 66.667 0.00 0.00 0.00 4.18
7132 11215 2.434884 CACCGGCAGCAACGAGAT 60.435 61.111 0.00 0.00 0.00 2.75
7134 11217 2.125552 CCGGCAGCAACGAGATCA 60.126 61.111 0.00 0.00 0.00 2.92
7135 11218 2.456119 CCGGCAGCAACGAGATCAC 61.456 63.158 0.00 0.00 0.00 3.06
7142 11234 1.374125 CAACGAGATCACCGTGGCA 60.374 57.895 12.76 0.00 40.44 4.92
7192 11284 2.741985 CAACATGCTGACGCCGGA 60.742 61.111 5.05 0.00 34.43 5.14
7214 11306 1.532316 AGTTCCCGACCTGGACGAA 60.532 57.895 19.67 4.47 42.00 3.85
7261 11362 4.792804 GAGGTGAGCAGCCAGGCC 62.793 72.222 8.22 0.00 0.00 5.19
7308 11409 3.983420 CCAGCCAAGGCAGGGGAA 61.983 66.667 14.23 0.00 42.99 3.97
7309 11410 2.118076 CAGCCAAGGCAGGGGAAA 59.882 61.111 14.40 0.00 44.88 3.13
7310 11411 1.980772 CAGCCAAGGCAGGGGAAAG 60.981 63.158 14.40 0.00 44.88 2.62
7311 11412 2.162906 AGCCAAGGCAGGGGAAAGA 61.163 57.895 14.40 0.00 44.88 2.52
7312 11413 1.979155 GCCAAGGCAGGGGAAAGAC 60.979 63.158 6.14 0.00 41.49 3.01
7313 11414 1.675641 CCAAGGCAGGGGAAAGACG 60.676 63.158 0.00 0.00 0.00 4.18
7314 11415 1.675641 CAAGGCAGGGGAAAGACGG 60.676 63.158 0.00 0.00 0.00 4.79
7315 11416 3.569200 AAGGCAGGGGAAAGACGGC 62.569 63.158 0.00 0.00 0.00 5.68
7316 11417 4.344865 GGCAGGGGAAAGACGGCA 62.345 66.667 0.00 0.00 0.00 5.69
7317 11418 3.056328 GCAGGGGAAAGACGGCAC 61.056 66.667 0.00 0.00 0.00 5.01
7332 11433 2.816958 CACGCCGAGATGCTGCTT 60.817 61.111 0.00 0.00 0.00 3.91
7438 11539 2.049433 ACGGACACTACGCACTGC 60.049 61.111 0.00 0.00 34.00 4.40
7479 11580 3.522808 GGTACGAGCGGACAGGAT 58.477 61.111 7.62 0.00 0.00 3.24
7563 11665 1.063412 TCGTCGTTTCTGCGTGATCG 61.063 55.000 0.00 0.00 40.37 3.69
7724 11827 1.135373 CCACGAATGACTGACTACGCT 60.135 52.381 0.00 0.00 0.00 5.07
7728 11831 4.438145 CACGAATGACTGACTACGCTATTC 59.562 45.833 0.00 0.00 0.00 1.75
7732 11835 6.458232 AATGACTGACTACGCTATTCTTCT 57.542 37.500 0.00 0.00 0.00 2.85
7777 12023 3.755434 GCACCTGCAGAGCAAAGT 58.245 55.556 17.39 0.00 38.41 2.66
7778 12024 2.932663 GCACCTGCAGAGCAAAGTA 58.067 52.632 17.39 0.00 38.41 2.24
7779 12025 0.801251 GCACCTGCAGAGCAAAGTAG 59.199 55.000 17.39 0.00 38.41 2.57
7780 12026 0.801251 CACCTGCAGAGCAAAGTAGC 59.199 55.000 17.39 0.00 38.41 3.58
7781 12027 0.397941 ACCTGCAGAGCAAAGTAGCA 59.602 50.000 17.39 0.00 38.41 3.49
7783 12029 0.447011 CTGCAGAGCAAAGTAGCAGC 59.553 55.000 8.42 0.00 44.98 5.25
7812 12086 1.153597 TACGGCGCGTTCTCTCGATA 61.154 55.000 6.90 0.00 41.54 2.92
7846 12120 2.983592 GTGTTTGGACAGGGCCGG 60.984 66.667 0.79 0.79 36.20 6.13
7962 12244 2.593257 CGGGACAGTTCGAAACTACTC 58.407 52.381 0.00 0.00 40.46 2.59
7963 12245 2.593257 GGGACAGTTCGAAACTACTCG 58.407 52.381 0.00 0.00 40.46 4.18
7965 12247 2.978489 GGACAGTTCGAAACTACTCGTG 59.022 50.000 0.00 0.00 40.46 4.35
8089 12625 2.946969 CGTTATTATTTACGCACGCACG 59.053 45.455 0.00 0.00 39.50 5.34
8172 12708 0.452184 GACAAGGCATCTCGTCTCGA 59.548 55.000 0.00 0.00 0.00 4.04
8314 12863 1.239296 TACGTACGTGCAGAGCCAGT 61.239 55.000 30.25 1.29 0.00 4.00
8338 12887 1.377202 GCCTCGCCAATGGAGTGAA 60.377 57.895 2.05 0.00 0.00 3.18
8417 12966 0.989890 GTGGATAGACGTGCGTGTTC 59.010 55.000 0.67 0.00 0.00 3.18
8554 13110 3.629883 TACCGTGGTAAGCGCGTGG 62.630 63.158 8.43 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.436195 GCCATCGCCGCAGAATAACA 61.436 55.000 0.00 0.00 0.00 2.41
1 2 1.279840 GCCATCGCCGCAGAATAAC 59.720 57.895 0.00 0.00 0.00 1.89
2 3 1.153269 TGCCATCGCCGCAGAATAA 60.153 52.632 0.00 0.00 0.00 1.40
3 4 2.503546 TGCCATCGCCGCAGAATA 59.496 55.556 0.00 0.00 0.00 1.75
22 23 2.664851 TTCACTGGTTCGGCTGCG 60.665 61.111 0.00 0.00 0.00 5.18
23 24 2.617274 GGTTCACTGGTTCGGCTGC 61.617 63.158 0.00 0.00 0.00 5.25
24 25 1.966451 GGGTTCACTGGTTCGGCTG 60.966 63.158 0.00 0.00 0.00 4.85
25 26 2.113243 GAGGGTTCACTGGTTCGGCT 62.113 60.000 0.00 0.00 0.00 5.52
26 27 1.671379 GAGGGTTCACTGGTTCGGC 60.671 63.158 0.00 0.00 0.00 5.54
27 28 1.374252 CGAGGGTTCACTGGTTCGG 60.374 63.158 0.00 0.00 0.00 4.30
28 29 0.599558 TACGAGGGTTCACTGGTTCG 59.400 55.000 0.00 0.00 31.65 3.95
29 30 1.617357 AGTACGAGGGTTCACTGGTTC 59.383 52.381 0.00 0.00 31.65 3.62
30 31 1.617357 GAGTACGAGGGTTCACTGGTT 59.383 52.381 0.00 0.00 31.65 3.67
31 32 1.254954 GAGTACGAGGGTTCACTGGT 58.745 55.000 0.00 0.00 33.82 4.00
32 33 0.531200 GGAGTACGAGGGTTCACTGG 59.469 60.000 0.00 0.00 0.00 4.00
33 34 1.473278 GAGGAGTACGAGGGTTCACTG 59.527 57.143 0.00 0.00 0.00 3.66
34 35 1.355043 AGAGGAGTACGAGGGTTCACT 59.645 52.381 0.00 0.00 0.00 3.41
35 36 1.744522 GAGAGGAGTACGAGGGTTCAC 59.255 57.143 0.00 0.00 0.00 3.18
36 37 1.340795 GGAGAGGAGTACGAGGGTTCA 60.341 57.143 0.00 0.00 0.00 3.18
37 38 1.391577 GGAGAGGAGTACGAGGGTTC 58.608 60.000 0.00 0.00 0.00 3.62
38 39 0.394080 CGGAGAGGAGTACGAGGGTT 60.394 60.000 0.00 0.00 0.00 4.11
39 40 1.224039 CGGAGAGGAGTACGAGGGT 59.776 63.158 0.00 0.00 0.00 4.34
40 41 2.188161 GCGGAGAGGAGTACGAGGG 61.188 68.421 0.00 0.00 0.00 4.30
41 42 2.535788 CGCGGAGAGGAGTACGAGG 61.536 68.421 0.00 0.00 0.00 4.63
42 43 1.814586 ACGCGGAGAGGAGTACGAG 60.815 63.158 12.47 0.00 0.00 4.18
43 44 2.104859 CACGCGGAGAGGAGTACGA 61.105 63.158 12.47 0.00 0.00 3.43
44 45 2.403987 CACGCGGAGAGGAGTACG 59.596 66.667 12.47 0.00 0.00 3.67
45 46 2.772691 CCCACGCGGAGAGGAGTAC 61.773 68.421 12.47 0.00 31.73 2.73
46 47 2.439701 CCCACGCGGAGAGGAGTA 60.440 66.667 12.47 0.00 31.73 2.59
50 51 4.899239 GATGCCCACGCGGAGAGG 62.899 72.222 12.47 6.32 38.08 3.69
51 52 4.899239 GGATGCCCACGCGGAGAG 62.899 72.222 12.47 0.00 38.08 3.20
64 65 2.434884 AAGACGCGGCAGTGGATG 60.435 61.111 17.71 0.00 0.00 3.51
65 66 2.125512 GAAGACGCGGCAGTGGAT 60.126 61.111 17.71 0.00 0.00 3.41
66 67 4.373116 GGAAGACGCGGCAGTGGA 62.373 66.667 17.71 0.00 0.00 4.02
77 78 4.452733 CACGGAGCCGGGGAAGAC 62.453 72.222 14.07 0.00 44.69 3.01
87 88 3.644399 GAAGGGGACGACACGGAGC 62.644 68.421 0.00 0.00 0.00 4.70
88 89 2.572284 GAAGGGGACGACACGGAG 59.428 66.667 0.00 0.00 0.00 4.63
89 90 2.141011 TAGGAAGGGGACGACACGGA 62.141 60.000 0.00 0.00 0.00 4.69
90 91 1.664321 CTAGGAAGGGGACGACACGG 61.664 65.000 0.00 0.00 0.00 4.94
91 92 1.664321 CCTAGGAAGGGGACGACACG 61.664 65.000 1.05 0.00 39.48 4.49
92 93 1.957765 GCCTAGGAAGGGGACGACAC 61.958 65.000 14.75 0.00 43.87 3.67
93 94 1.684734 GCCTAGGAAGGGGACGACA 60.685 63.158 14.75 0.00 43.87 4.35
94 95 2.433146 GGCCTAGGAAGGGGACGAC 61.433 68.421 14.75 0.00 43.87 4.34
95 96 2.042230 GGCCTAGGAAGGGGACGA 60.042 66.667 14.75 0.00 43.87 4.20
96 97 2.041819 AGGCCTAGGAAGGGGACG 60.042 66.667 14.75 0.00 43.87 4.79
97 98 0.761323 GAGAGGCCTAGGAAGGGGAC 60.761 65.000 14.75 0.00 43.87 4.46
98 99 1.627019 GAGAGGCCTAGGAAGGGGA 59.373 63.158 14.75 0.00 43.87 4.81
99 100 1.460497 GGAGAGGCCTAGGAAGGGG 60.460 68.421 14.75 0.00 43.87 4.79
100 101 0.104725 ATGGAGAGGCCTAGGAAGGG 60.105 60.000 14.75 0.00 43.87 3.95
101 102 1.813102 AATGGAGAGGCCTAGGAAGG 58.187 55.000 14.75 0.00 46.76 3.46
102 103 3.071747 GGTTAATGGAGAGGCCTAGGAAG 59.928 52.174 14.75 0.00 37.63 3.46
103 104 3.046374 GGTTAATGGAGAGGCCTAGGAA 58.954 50.000 14.75 0.00 37.63 3.36
104 105 2.022428 TGGTTAATGGAGAGGCCTAGGA 60.022 50.000 14.75 0.00 37.63 2.94
105 106 2.408565 TGGTTAATGGAGAGGCCTAGG 58.591 52.381 4.42 3.67 37.63 3.02
106 107 4.080299 AGTTTGGTTAATGGAGAGGCCTAG 60.080 45.833 4.42 0.00 37.63 3.02
107 108 3.850173 AGTTTGGTTAATGGAGAGGCCTA 59.150 43.478 4.42 0.00 37.63 3.93
108 109 2.649816 AGTTTGGTTAATGGAGAGGCCT 59.350 45.455 3.86 3.86 37.63 5.19
109 110 3.017442 GAGTTTGGTTAATGGAGAGGCC 58.983 50.000 0.00 0.00 37.10 5.19
110 111 2.678336 CGAGTTTGGTTAATGGAGAGGC 59.322 50.000 0.00 0.00 0.00 4.70
111 112 2.678336 GCGAGTTTGGTTAATGGAGAGG 59.322 50.000 0.00 0.00 0.00 3.69
112 113 3.334691 TGCGAGTTTGGTTAATGGAGAG 58.665 45.455 0.00 0.00 0.00 3.20
113 114 3.410631 TGCGAGTTTGGTTAATGGAGA 57.589 42.857 0.00 0.00 0.00 3.71
114 115 3.440173 ACATGCGAGTTTGGTTAATGGAG 59.560 43.478 0.00 0.00 0.00 3.86
115 116 3.190327 CACATGCGAGTTTGGTTAATGGA 59.810 43.478 0.00 0.00 0.00 3.41
116 117 3.500982 CACATGCGAGTTTGGTTAATGG 58.499 45.455 0.00 0.00 0.00 3.16
117 118 3.057596 ACCACATGCGAGTTTGGTTAATG 60.058 43.478 0.00 0.00 39.41 1.90
118 119 3.153919 ACCACATGCGAGTTTGGTTAAT 58.846 40.909 0.00 0.00 39.41 1.40
221 222 0.035056 AGGTGTGTCTGGGCATTAGC 60.035 55.000 0.00 0.00 41.10 3.09
245 246 7.633789 AGACACTATTTACTCCAATGTTCCAT 58.366 34.615 0.00 0.00 0.00 3.41
269 270 0.038159 GGTGTGAAGGACTCGTGGAG 60.038 60.000 0.00 0.00 35.52 3.86
282 283 2.011548 GCTGTCAGTTGTGTGGTGTGA 61.012 52.381 0.93 0.00 0.00 3.58
285 286 0.809636 TCGCTGTCAGTTGTGTGGTG 60.810 55.000 0.93 0.00 0.00 4.17
298 299 2.654749 TGTCTGATTTCGATCGCTGT 57.345 45.000 11.09 0.00 0.00 4.40
307 308 6.622462 GCCACAAGAGAAAGATGTCTGATTTC 60.622 42.308 0.00 0.00 33.97 2.17
312 313 2.414481 CGCCACAAGAGAAAGATGTCTG 59.586 50.000 0.00 0.00 0.00 3.51
357 358 1.593750 CTGTGGAGGCTAGCGCATC 60.594 63.158 11.47 6.65 45.68 3.91
380 381 1.953686 CCTTCCAAGAAAGGTTCGCAA 59.046 47.619 0.00 0.00 40.86 4.85
391 392 5.623956 TGTAGAAAGTTGACCTTCCAAGA 57.376 39.130 0.00 0.00 31.27 3.02
393 394 6.419791 TCTTTGTAGAAAGTTGACCTTCCAA 58.580 36.000 11.74 0.00 39.79 3.53
395 396 6.542735 AGTTCTTTGTAGAAAGTTGACCTTCC 59.457 38.462 11.74 0.00 41.86 3.46
396 397 7.254829 GGAGTTCTTTGTAGAAAGTTGACCTTC 60.255 40.741 11.74 5.23 41.86 3.46
399 400 5.820947 TGGAGTTCTTTGTAGAAAGTTGACC 59.179 40.000 11.74 11.43 41.86 4.02
426 427 6.905736 TCAGATCATACTGTAGAGGAGAAGT 58.094 40.000 0.00 0.00 38.79 3.01
427 428 7.040478 CCTTCAGATCATACTGTAGAGGAGAAG 60.040 44.444 0.00 0.00 37.44 2.85
439 440 3.708631 CACCAGGTCCTTCAGATCATACT 59.291 47.826 0.00 0.00 0.00 2.12
440 441 3.742640 GCACCAGGTCCTTCAGATCATAC 60.743 52.174 0.00 0.00 0.00 2.39
452 2639 2.034221 GGAAGGTGCACCAGGTCC 59.966 66.667 36.39 31.36 38.89 4.46
456 2643 0.754957 TTGGTTGGAAGGTGCACCAG 60.755 55.000 36.39 0.00 37.48 4.00
459 2646 1.963515 AGAATTGGTTGGAAGGTGCAC 59.036 47.619 8.80 8.80 0.00 4.57
494 2681 5.548181 ATTAAGGGATACGGGAGTTTCTC 57.452 43.478 0.00 0.00 43.33 2.87
501 2688 2.224354 GGCGAAATTAAGGGATACGGGA 60.224 50.000 0.00 0.00 37.60 5.14
502 2689 2.148768 GGCGAAATTAAGGGATACGGG 58.851 52.381 0.00 0.00 37.60 5.28
503 2690 1.796459 CGGCGAAATTAAGGGATACGG 59.204 52.381 0.00 0.00 37.60 4.02
504 2691 1.193874 GCGGCGAAATTAAGGGATACG 59.806 52.381 12.98 0.00 37.60 3.06
505 2692 2.479275 GAGCGGCGAAATTAAGGGATAC 59.521 50.000 12.98 0.00 0.00 2.24
506 2693 2.549349 GGAGCGGCGAAATTAAGGGATA 60.549 50.000 12.98 0.00 0.00 2.59
507 2694 1.594331 GAGCGGCGAAATTAAGGGAT 58.406 50.000 12.98 0.00 0.00 3.85
508 2695 0.463116 GGAGCGGCGAAATTAAGGGA 60.463 55.000 12.98 0.00 0.00 4.20
509 2696 1.444917 GGGAGCGGCGAAATTAAGGG 61.445 60.000 12.98 0.00 0.00 3.95
510 2697 1.444917 GGGGAGCGGCGAAATTAAGG 61.445 60.000 12.98 0.00 0.00 2.69
511 2698 0.463833 AGGGGAGCGGCGAAATTAAG 60.464 55.000 12.98 0.00 0.00 1.85
512 2699 0.463116 GAGGGGAGCGGCGAAATTAA 60.463 55.000 12.98 0.00 0.00 1.40
513 2700 1.145377 GAGGGGAGCGGCGAAATTA 59.855 57.895 12.98 0.00 0.00 1.40
514 2701 2.124695 GAGGGGAGCGGCGAAATT 60.125 61.111 12.98 0.00 0.00 1.82
515 2702 4.176752 GGAGGGGAGCGGCGAAAT 62.177 66.667 12.98 0.00 0.00 2.17
557 2744 2.269562 CCGGCCCACCATAAACGA 59.730 61.111 0.00 0.00 34.57 3.85
578 2765 2.115910 CATACCATGGGCCGGCAT 59.884 61.111 30.85 11.77 0.00 4.40
589 2776 0.839277 CTGGGTCATGAGGCATACCA 59.161 55.000 0.00 0.00 39.06 3.25
596 2790 0.034059 GTATCCGCTGGGTCATGAGG 59.966 60.000 0.00 0.00 33.83 3.86
618 2812 2.665185 AGAACGAACCACGCCTGC 60.665 61.111 0.00 0.00 46.94 4.85
619 2813 2.954753 GCAGAACGAACCACGCCTG 61.955 63.158 0.00 0.00 46.94 4.85
620 2814 2.665185 GCAGAACGAACCACGCCT 60.665 61.111 0.00 0.00 46.94 5.52
621 2815 3.723348 GGCAGAACGAACCACGCC 61.723 66.667 0.00 0.00 46.94 5.68
622 2816 2.970324 TGGCAGAACGAACCACGC 60.970 61.111 0.00 0.00 46.94 5.34
623 2817 2.935955 GTGGCAGAACGAACCACG 59.064 61.111 0.00 0.00 44.02 4.94
625 2819 2.280524 CGGTGGCAGAACGAACCA 60.281 61.111 0.00 0.00 32.69 3.67
626 2820 2.999739 TTCCGGTGGCAGAACGAACC 63.000 60.000 0.00 0.00 0.00 3.62
627 2821 1.566018 CTTCCGGTGGCAGAACGAAC 61.566 60.000 0.00 0.00 0.00 3.95
628 2822 1.301401 CTTCCGGTGGCAGAACGAA 60.301 57.895 0.00 0.00 0.00 3.85
629 2823 2.342279 CTTCCGGTGGCAGAACGA 59.658 61.111 0.00 0.00 0.00 3.85
630 2824 2.725203 TTCCTTCCGGTGGCAGAACG 62.725 60.000 0.00 0.00 0.00 3.95
631 2825 0.322546 ATTCCTTCCGGTGGCAGAAC 60.323 55.000 0.00 0.00 0.00 3.01
632 2826 0.322456 CATTCCTTCCGGTGGCAGAA 60.322 55.000 0.00 0.00 0.00 3.02
633 2827 1.299648 CATTCCTTCCGGTGGCAGA 59.700 57.895 0.00 0.00 0.00 4.26
848 3050 2.579684 GAAGGAATCGGCCTGTCGCT 62.580 60.000 0.00 0.00 38.58 4.93
975 3179 1.407258 CCGCCTCGATCTTCTTCTTCT 59.593 52.381 0.00 0.00 0.00 2.85
976 3180 1.405821 TCCGCCTCGATCTTCTTCTTC 59.594 52.381 0.00 0.00 0.00 2.87
977 3181 1.407258 CTCCGCCTCGATCTTCTTCTT 59.593 52.381 0.00 0.00 0.00 2.52
1117 3321 1.961133 ATTAAGTGTCGGAGGGGGAA 58.039 50.000 0.00 0.00 0.00 3.97
1141 3702 2.879646 ACTTGTCCGCGGAATGTAAAAA 59.120 40.909 32.93 14.03 0.00 1.94
1161 3722 3.670991 GCGCAAGAGCATATAGTACTGAC 59.329 47.826 5.39 0.00 42.27 3.51
1171 3732 1.083806 CCAACGAGCGCAAGAGCATA 61.084 55.000 11.47 0.00 42.27 3.14
1172 3733 2.393768 CCAACGAGCGCAAGAGCAT 61.394 57.895 11.47 0.00 42.27 3.79
1173 3734 3.043713 CCAACGAGCGCAAGAGCA 61.044 61.111 11.47 0.00 42.27 4.26
1174 3735 2.607892 AACCAACGAGCGCAAGAGC 61.608 57.895 11.47 0.00 43.02 4.09
1198 3766 0.178068 CCCTGATTCCACGGTCGAAT 59.822 55.000 0.40 0.40 32.62 3.34
1212 3780 5.781306 TGGTACTGTACTACATTTTCCCTGA 59.219 40.000 16.79 0.00 0.00 3.86
1243 3881 0.804989 CAGAGTTCACCCGGAATTGC 59.195 55.000 0.73 0.00 37.93 3.56
1270 3909 0.187606 ACTTCTTCACCCAAACCCCC 59.812 55.000 0.00 0.00 0.00 5.40
1422 4070 4.822026 ACTGGTCATTCTAAGTACAGTGC 58.178 43.478 0.00 0.00 36.46 4.40
1440 4088 6.741992 TTTTGCTCATAGACATGTAACTGG 57.258 37.500 0.00 0.00 33.57 4.00
1509 4182 2.263945 GCTAGCGAAGGAGTGTTTCTC 58.736 52.381 0.00 0.00 42.07 2.87
1511 4184 2.080286 TGCTAGCGAAGGAGTGTTTC 57.920 50.000 10.77 0.00 0.00 2.78
1592 4268 6.127647 ACTGTTCTGCAAAAAGAGAAATGTCA 60.128 34.615 11.30 0.00 30.08 3.58
1599 4275 5.895636 TGAAACTGTTCTGCAAAAAGAGA 57.104 34.783 11.30 0.00 34.60 3.10
1694 4407 6.155221 TCAGCACTATCCCAGATGATATAACC 59.845 42.308 0.00 0.00 0.00 2.85
1824 4766 7.977853 GGAATGTGCAAGATGAAAGTTTATCAT 59.022 33.333 0.00 0.00 40.14 2.45
1879 4823 7.717436 TGTTGTTGAGTATTAAATCCTGTGTCA 59.283 33.333 0.00 0.00 0.00 3.58
1939 4883 5.353678 GCATCTCTTCTTAGCATTGTTGACT 59.646 40.000 0.00 0.00 0.00 3.41
1940 4884 5.448360 GGCATCTCTTCTTAGCATTGTTGAC 60.448 44.000 0.00 0.00 0.00 3.18
1942 4886 4.397103 TGGCATCTCTTCTTAGCATTGTTG 59.603 41.667 0.00 0.00 0.00 3.33
1943 4887 4.592942 TGGCATCTCTTCTTAGCATTGTT 58.407 39.130 0.00 0.00 0.00 2.83
1944 4888 4.226427 TGGCATCTCTTCTTAGCATTGT 57.774 40.909 0.00 0.00 0.00 2.71
1946 4890 5.443283 TCATTGGCATCTCTTCTTAGCATT 58.557 37.500 0.00 0.00 0.00 3.56
1972 5863 4.047883 AGAAAGCATAAGTAGGATGGGGT 58.952 43.478 0.00 0.00 0.00 4.95
2018 5909 4.240096 ACAATGTTTTCTGCTGCTTATGC 58.760 39.130 0.00 0.00 40.20 3.14
2388 6344 7.344095 AGGAAATGAATCCAAGAAGCATTAG 57.656 36.000 0.00 0.00 42.27 1.73
2714 6670 1.539827 ACGCCACTTTACATTGCTTCC 59.460 47.619 0.00 0.00 0.00 3.46
2786 6742 7.763528 AGAGCAAGCCTATCTTTATAATGATCG 59.236 37.037 15.13 10.32 31.27 3.69
3002 6958 6.947733 TGCTTCCATCTTCTTATCTGGAAAAA 59.052 34.615 4.59 0.00 44.76 1.94
3008 6964 5.241064 CCCAATGCTTCCATCTTCTTATCTG 59.759 44.000 0.00 0.00 0.00 2.90
3340 7296 3.380004 CAGGCAAGAACCAGTACAAACAA 59.620 43.478 0.00 0.00 0.00 2.83
3363 7321 6.713903 ACATTTCTTGAAGCTCAGAAAGATCA 59.286 34.615 16.51 0.18 31.90 2.92
3364 7322 7.143514 ACATTTCTTGAAGCTCAGAAAGATC 57.856 36.000 16.51 0.00 31.90 2.75
3365 7323 7.521871 AACATTTCTTGAAGCTCAGAAAGAT 57.478 32.000 16.51 8.10 31.90 2.40
3484 7458 6.424207 GCACTCCCTCCGTAAAGAAATATAAG 59.576 42.308 0.00 0.00 0.00 1.73
3485 7459 6.126997 TGCACTCCCTCCGTAAAGAAATATAA 60.127 38.462 0.00 0.00 0.00 0.98
3590 7564 2.499289 ACTGCACACACCCATTCAAAAA 59.501 40.909 0.00 0.00 0.00 1.94
3647 7621 5.785243 TGTGTCGGACTGTGAAATTATGTA 58.215 37.500 9.88 0.00 0.00 2.29
3744 7718 4.151070 GCATCGTGTGTAATTTGTGAGTG 58.849 43.478 0.00 0.00 0.00 3.51
3766 7740 5.834239 AGTGTTTACGAGGAATACAAACG 57.166 39.130 0.00 0.00 32.95 3.60
4141 8116 3.189287 ACTGTTGCAGAATTTGACCGATC 59.811 43.478 2.91 0.00 35.18 3.69
4162 8137 5.565259 CAGAACAGACAACAAATCGCATAAC 59.435 40.000 0.00 0.00 0.00 1.89
4296 8271 6.324512 TGGAACAGGCAGAATTATAATGCATT 59.675 34.615 17.56 17.56 41.78 3.56
4337 8317 4.821805 CGGACCCTTTACAGCATAAATGAT 59.178 41.667 0.00 0.00 0.00 2.45
4430 8411 7.928307 ACAATATCTGTTTGTAGTTCTGCAT 57.072 32.000 0.00 0.00 35.61 3.96
4543 8524 0.111061 ATCCAGCTCACAACAGCCAA 59.889 50.000 0.00 0.00 40.65 4.52
4727 8709 2.955614 AGCAGTGAAGCATGCAATTTC 58.044 42.857 21.98 15.34 45.01 2.17
4796 8779 1.834896 TCGCCTTATGAAGCCTTACCA 59.165 47.619 0.00 0.00 0.00 3.25
4818 8801 2.586245 GCGGTAAGGTGGGGGTAC 59.414 66.667 0.00 0.00 0.00 3.34
4852 8835 1.810151 GCATTTTGTCGGTCTTAGGCA 59.190 47.619 0.00 0.00 0.00 4.75
5116 9108 1.412710 GAGGACAGTGTGTGTTCAGGA 59.587 52.381 0.00 0.00 40.56 3.86
5161 9153 3.150848 TGATCATGTCGTACTGCAGTC 57.849 47.619 25.56 14.02 0.00 3.51
5885 9881 9.821662 GACAACATGTAGTGGAAAAATAAGTAC 57.178 33.333 0.00 0.00 0.00 2.73
5940 9937 3.606687 AGTGCTTGGTAAAGGGTATTCG 58.393 45.455 0.00 0.00 33.68 3.34
5978 9998 9.565090 AGATAACTGATATGAAGCATGCTTAAA 57.435 29.630 32.02 23.00 36.26 1.52
5979 9999 9.565090 AAGATAACTGATATGAAGCATGCTTAA 57.435 29.630 32.02 26.12 36.26 1.85
5981 10001 9.565090 TTAAGATAACTGATATGAAGCATGCTT 57.435 29.630 32.41 32.41 39.23 3.91
5982 10002 9.217278 CTTAAGATAACTGATATGAAGCATGCT 57.783 33.333 16.30 16.30 0.00 3.79
5983 10003 8.449397 CCTTAAGATAACTGATATGAAGCATGC 58.551 37.037 10.51 10.51 0.00 4.06
5984 10004 9.499479 ACCTTAAGATAACTGATATGAAGCATG 57.501 33.333 3.36 0.00 0.00 4.06
5986 10006 9.905713 AAACCTTAAGATAACTGATATGAAGCA 57.094 29.630 3.36 0.00 0.00 3.91
5997 10017 9.654663 GCCGATATATGAAACCTTAAGATAACT 57.345 33.333 3.36 0.00 0.00 2.24
5998 10018 9.431887 TGCCGATATATGAAACCTTAAGATAAC 57.568 33.333 3.36 0.00 0.00 1.89
6000 10020 9.817809 GATGCCGATATATGAAACCTTAAGATA 57.182 33.333 3.36 0.00 0.00 1.98
6056 10084 5.645497 AGAACATGCAGAACAGAAACCTATC 59.355 40.000 0.00 0.00 0.00 2.08
6174 10205 9.217278 CAGAATAGGATATTTGGATGAACAGAG 57.783 37.037 0.00 0.00 0.00 3.35
6198 10229 8.246871 TGATCAGAATTGAGAAGTACAGTACAG 58.753 37.037 13.37 0.00 36.61 2.74
6257 10290 9.823647 GTTAAGAATTGTCCTCAATCAGATAGA 57.176 33.333 0.00 0.00 42.60 1.98
6258 10291 9.605275 TGTTAAGAATTGTCCTCAATCAGATAG 57.395 33.333 0.00 0.00 42.60 2.08
6318 10372 5.647658 AGTAATAATGTGCTGTAGCTTTGCA 59.352 36.000 5.38 0.00 42.66 4.08
6379 10433 5.638596 ATATTCGGGACTTGGTTTGTTTC 57.361 39.130 0.00 0.00 0.00 2.78
6405 10459 2.622452 CCAGAAATGCTCCTTGGATGGT 60.622 50.000 0.00 0.00 0.00 3.55
6518 10572 1.429463 GTGAAAGCGTGAGACGGATT 58.571 50.000 0.00 0.00 42.82 3.01
6523 10577 1.997669 CCTAGGTGAAAGCGTGAGAC 58.002 55.000 0.00 0.00 40.95 3.36
6526 10581 0.613260 ATGCCTAGGTGAAAGCGTGA 59.387 50.000 11.31 0.00 40.95 4.35
6533 10588 6.183360 ACAAACATTTGAAATGCCTAGGTGAA 60.183 34.615 17.19 0.00 40.55 3.18
6541 10596 8.819974 CCTAATGATACAAACATTTGAAATGCC 58.180 33.333 17.19 0.43 40.55 4.40
6542 10597 9.369904 ACCTAATGATACAAACATTTGAAATGC 57.630 29.630 17.19 0.73 40.55 3.56
6545 10600 9.308000 AGGACCTAATGATACAAACATTTGAAA 57.692 29.630 11.24 0.00 40.55 2.69
6546 10601 8.739039 CAGGACCTAATGATACAAACATTTGAA 58.261 33.333 11.24 0.00 40.55 2.69
6547 10602 7.148086 GCAGGACCTAATGATACAAACATTTGA 60.148 37.037 11.24 0.00 40.55 2.69
6548 10603 6.974622 GCAGGACCTAATGATACAAACATTTG 59.025 38.462 0.00 2.77 43.62 2.32
6549 10604 6.891908 AGCAGGACCTAATGATACAAACATTT 59.108 34.615 0.00 0.00 38.61 2.32
6550 10605 6.319658 CAGCAGGACCTAATGATACAAACATT 59.680 38.462 0.00 0.00 40.40 2.71
6551 10606 5.824624 CAGCAGGACCTAATGATACAAACAT 59.175 40.000 0.00 0.00 0.00 2.71
6552 10607 5.185454 CAGCAGGACCTAATGATACAAACA 58.815 41.667 0.00 0.00 0.00 2.83
6553 10608 4.576463 CCAGCAGGACCTAATGATACAAAC 59.424 45.833 0.00 0.00 36.89 2.93
6554 10609 4.473196 TCCAGCAGGACCTAATGATACAAA 59.527 41.667 0.00 0.00 39.61 2.83
6556 10611 3.643320 CTCCAGCAGGACCTAATGATACA 59.357 47.826 0.00 0.00 39.61 2.29
6557 10612 3.556004 GCTCCAGCAGGACCTAATGATAC 60.556 52.174 0.00 0.00 39.61 2.24
6558 10613 2.634940 GCTCCAGCAGGACCTAATGATA 59.365 50.000 0.00 0.00 39.61 2.15
6561 10616 0.835941 AGCTCCAGCAGGACCTAATG 59.164 55.000 0.48 0.00 45.16 1.90
6563 10618 1.831736 GTTAGCTCCAGCAGGACCTAA 59.168 52.381 8.45 8.45 45.16 2.69
6564 10619 1.007238 AGTTAGCTCCAGCAGGACCTA 59.993 52.381 0.48 0.00 45.16 3.08
6565 10620 0.252467 AGTTAGCTCCAGCAGGACCT 60.252 55.000 0.48 0.00 45.16 3.85
6566 10621 1.486211 TAGTTAGCTCCAGCAGGACC 58.514 55.000 0.48 0.00 45.16 4.46
6567 10622 2.233922 TGTTAGTTAGCTCCAGCAGGAC 59.766 50.000 0.48 0.00 45.16 3.85
6568 10623 2.536066 TGTTAGTTAGCTCCAGCAGGA 58.464 47.619 0.00 0.00 45.16 3.86
6569 10624 3.334583 TTGTTAGTTAGCTCCAGCAGG 57.665 47.619 0.48 0.00 45.16 4.85
6570 10625 4.319177 ACTTTGTTAGTTAGCTCCAGCAG 58.681 43.478 0.48 0.00 37.37 4.24
6571 10626 4.202315 TGACTTTGTTAGTTAGCTCCAGCA 60.202 41.667 0.48 0.00 39.60 4.41
6572 10627 4.315803 TGACTTTGTTAGTTAGCTCCAGC 58.684 43.478 0.00 0.00 37.17 4.85
6627 10682 1.948145 GCCTTCTTCTCCATGATGCAG 59.052 52.381 0.00 0.00 0.00 4.41
6657 10712 2.109128 TGACCCAATAACAAGCCTGGAA 59.891 45.455 0.00 0.00 0.00 3.53
6663 10718 7.375053 TGAATTTTACTGACCCAATAACAAGC 58.625 34.615 0.00 0.00 0.00 4.01
6691 10746 8.682936 AGATATCCATGAGAACAAATGGTAAC 57.317 34.615 0.00 0.00 43.31 2.50
6694 10749 5.994054 CGAGATATCCATGAGAACAAATGGT 59.006 40.000 0.00 0.00 43.31 3.55
6708 10763 1.075698 GAGAGGACCCCGAGATATCCA 59.924 57.143 0.00 0.00 33.33 3.41
6715 10770 1.615883 CATGTATGAGAGGACCCCGAG 59.384 57.143 0.00 0.00 0.00 4.63
6746 10825 9.313118 AGAAATCATTCTTAAAACGCAAAAAGT 57.687 25.926 0.00 0.00 43.43 2.66
6747 10826 9.571804 CAGAAATCATTCTTAAAACGCAAAAAG 57.428 29.630 0.00 0.00 43.43 2.27
6749 10828 8.538856 CACAGAAATCATTCTTAAAACGCAAAA 58.461 29.630 0.00 0.00 43.43 2.44
6752 10831 5.629020 GCACAGAAATCATTCTTAAAACGCA 59.371 36.000 0.00 0.00 43.43 5.24
6754 10836 6.524586 GGAGCACAGAAATCATTCTTAAAACG 59.475 38.462 0.00 0.00 43.43 3.60
6755 10837 7.597386 AGGAGCACAGAAATCATTCTTAAAAC 58.403 34.615 0.00 0.00 43.43 2.43
6756 10838 7.765695 AGGAGCACAGAAATCATTCTTAAAA 57.234 32.000 0.00 0.00 43.43 1.52
6759 10841 7.765695 AAAAGGAGCACAGAAATCATTCTTA 57.234 32.000 0.00 0.00 43.43 2.10
6761 10843 6.453092 CAAAAAGGAGCACAGAAATCATTCT 58.547 36.000 0.00 0.00 46.91 2.40
6762 10844 5.119743 GCAAAAAGGAGCACAGAAATCATTC 59.880 40.000 0.00 0.00 35.70 2.67
6771 10853 1.952296 AGACTGCAAAAAGGAGCACAG 59.048 47.619 0.00 0.00 39.69 3.66
6776 10858 4.096081 GGATGATCAGACTGCAAAAAGGAG 59.904 45.833 0.09 0.00 42.18 3.69
6778 10860 3.760151 TGGATGATCAGACTGCAAAAAGG 59.240 43.478 0.09 0.00 0.00 3.11
6859 10941 4.821935 GGGGGCCGGATATTTCAG 57.178 61.111 5.05 0.00 0.00 3.02
6925 11008 8.868103 ACAGAATCAGTGTGTCATATATCTGAT 58.132 33.333 0.00 6.55 42.10 2.90
6941 11024 1.067295 TCTGGCCCAACAGAATCAGT 58.933 50.000 0.00 0.00 44.03 3.41
6963 11046 2.467826 GCAGCTTGATGTCTCCGCC 61.468 63.158 0.00 0.00 0.00 6.13
6989 11072 4.414956 TCATGGAGGCCCGACCCT 62.415 66.667 0.00 0.00 40.58 4.34
6992 11075 2.501610 GACTCATGGAGGCCCGAC 59.498 66.667 0.00 0.00 30.04 4.79
7004 11087 2.254350 CACTTCGCGACGGACTCA 59.746 61.111 17.46 0.00 0.00 3.41
7037 11120 2.352805 CTGCCCTTCTTCCGGCTT 59.647 61.111 0.00 0.00 45.90 4.35
7038 11121 4.416738 GCTGCCCTTCTTCCGGCT 62.417 66.667 0.00 0.00 45.90 5.52
7039 11122 4.416738 AGCTGCCCTTCTTCCGGC 62.417 66.667 0.00 0.00 45.92 6.13
7040 11123 2.124942 GAGCTGCCCTTCTTCCGG 60.125 66.667 0.00 0.00 0.00 5.14
7041 11124 2.510238 CGAGCTGCCCTTCTTCCG 60.510 66.667 0.00 0.00 0.00 4.30
7042 11125 2.124942 CCGAGCTGCCCTTCTTCC 60.125 66.667 0.00 0.00 0.00 3.46
7048 11131 4.742649 TCGTCTCCGAGCTGCCCT 62.743 66.667 0.00 0.00 38.40 5.19
7116 11199 2.125512 GATCTCGTTGCTGCCGGT 60.126 61.111 1.90 0.00 0.00 5.28
7122 11205 1.079819 CCACGGTGATCTCGTTGCT 60.080 57.895 10.28 0.00 38.94 3.91
7125 11208 1.374252 GTGCCACGGTGATCTCGTT 60.374 57.895 10.28 0.00 38.94 3.85
7126 11209 2.261671 GTGCCACGGTGATCTCGT 59.738 61.111 10.28 8.46 41.93 4.18
7192 11284 3.322466 CCAGGTCGGGAACTGCCT 61.322 66.667 8.22 0.00 44.57 4.75
7214 11306 0.386858 CGTCCACGACAGACACGATT 60.387 55.000 0.00 0.00 43.02 3.34
7297 11398 2.757077 CCGTCTTTCCCCTGCCTT 59.243 61.111 0.00 0.00 0.00 4.35
7298 11399 4.035102 GCCGTCTTTCCCCTGCCT 62.035 66.667 0.00 0.00 0.00 4.75
7301 11402 2.742372 CGTGCCGTCTTTCCCCTG 60.742 66.667 0.00 0.00 0.00 4.45
7302 11403 4.699522 GCGTGCCGTCTTTCCCCT 62.700 66.667 0.00 0.00 0.00 4.79
7315 11416 2.816958 AAGCAGCATCTCGGCGTG 60.817 61.111 6.85 4.24 40.93 5.34
7316 11417 2.816958 CAAGCAGCATCTCGGCGT 60.817 61.111 6.85 0.00 40.93 5.68
7317 11418 2.816958 ACAAGCAGCATCTCGGCG 60.817 61.111 0.00 0.00 40.93 6.46
7318 11419 1.975363 GACACAAGCAGCATCTCGGC 61.975 60.000 0.00 0.00 36.06 5.54
7319 11420 1.364626 GGACACAAGCAGCATCTCGG 61.365 60.000 0.00 0.00 0.00 4.63
7320 11421 1.690283 CGGACACAAGCAGCATCTCG 61.690 60.000 0.00 0.00 0.00 4.04
7321 11422 1.975363 GCGGACACAAGCAGCATCTC 61.975 60.000 0.00 0.00 0.00 2.75
7322 11423 2.037136 GCGGACACAAGCAGCATCT 61.037 57.895 0.00 0.00 0.00 2.90
7323 11424 2.482374 GCGGACACAAGCAGCATC 59.518 61.111 0.00 0.00 0.00 3.91
7324 11425 3.058160 GGCGGACACAAGCAGCAT 61.058 61.111 0.00 0.00 34.54 3.79
7413 11514 1.577922 GTAGTGTCCGTCAGCGTGA 59.422 57.895 0.00 0.00 36.15 4.35
7438 11539 0.606401 ACAGGGAAGCCGTGACATTG 60.606 55.000 12.56 0.00 41.36 2.82
7595 11697 5.186409 TCATTCACTCACTCATGACTCATGA 59.814 40.000 18.74 18.74 46.84 3.07
7596 11698 5.416947 TCATTCACTCACTCATGACTCATG 58.583 41.667 12.25 12.25 42.60 3.07
7597 11699 5.672421 TCATTCACTCACTCATGACTCAT 57.328 39.130 0.00 0.00 0.00 2.90
7598 11700 5.672421 ATCATTCACTCACTCATGACTCA 57.328 39.130 0.00 0.00 0.00 3.41
7599 11701 6.981762 AAATCATTCACTCACTCATGACTC 57.018 37.500 0.00 0.00 0.00 3.36
7600 11702 7.389232 TGTAAATCATTCACTCACTCATGACT 58.611 34.615 0.00 0.00 0.00 3.41
7601 11703 7.547019 TCTGTAAATCATTCACTCACTCATGAC 59.453 37.037 0.00 0.00 0.00 3.06
7689 11792 4.360405 TGGGAAAGGCGGAAGGGC 62.360 66.667 0.00 0.00 42.69 5.19
7691 11794 2.741486 TTCGTGGGAAAGGCGGAAGG 62.741 60.000 0.00 0.00 0.00 3.46
7696 11799 0.673644 AGTCATTCGTGGGAAAGGCG 60.674 55.000 0.00 0.00 35.40 5.52
7724 11827 4.325119 AGGAGCTACGCGATAGAAGAATA 58.675 43.478 15.93 0.00 39.76 1.75
7728 11831 1.136197 CGAGGAGCTACGCGATAGAAG 60.136 57.143 18.14 2.82 39.76 2.85
7732 11835 2.944429 GCGAGGAGCTACGCGATA 59.056 61.111 27.22 0.00 44.91 2.92
7775 12021 0.750546 TACGTCCATCGGCTGCTACT 60.751 55.000 0.00 0.00 44.69 2.57
7776 12022 0.594284 GTACGTCCATCGGCTGCTAC 60.594 60.000 0.00 0.00 44.69 3.58
7777 12023 1.731700 GTACGTCCATCGGCTGCTA 59.268 57.895 0.00 0.00 44.69 3.49
7778 12024 2.494918 GTACGTCCATCGGCTGCT 59.505 61.111 0.00 0.00 44.69 4.24
7779 12025 2.954868 CGTACGTCCATCGGCTGC 60.955 66.667 7.22 0.00 44.69 5.25
7780 12026 2.278596 CCGTACGTCCATCGGCTG 60.279 66.667 15.21 0.00 44.69 4.85
7812 12086 3.807538 CGGTCGATGGACGGACGT 61.808 66.667 9.42 0.00 43.90 4.34
7924 12198 4.710695 CGTCGCCGGTACAGTGCA 62.711 66.667 1.90 0.00 0.00 4.57
7942 12224 2.593257 GAGTAGTTTCGAACTGTCCCG 58.407 52.381 0.00 0.00 42.84 5.14
7962 12244 1.351012 CGACGGCTCTACTACCACG 59.649 63.158 0.00 0.00 0.00 4.94
7963 12245 1.063811 GCGACGGCTCTACTACCAC 59.936 63.158 0.00 0.00 35.83 4.16
7965 12247 2.720605 GGCGACGGCTCTACTACC 59.279 66.667 15.00 0.00 39.81 3.18
8055 12337 7.470358 CGTAAATAATAACGCTCACTATTTCGC 59.530 37.037 0.00 0.00 31.66 4.70
8237 12780 2.039085 GCGAAAACGCATATGCATCAG 58.961 47.619 26.52 13.01 42.21 2.90
8262 12805 7.823799 TGCATGTCCTTTCTTTTTCTTTTTCTT 59.176 29.630 0.00 0.00 0.00 2.52
8264 12807 7.538303 TGCATGTCCTTTCTTTTTCTTTTTC 57.462 32.000 0.00 0.00 0.00 2.29
8270 12813 5.230726 CGCATATGCATGTCCTTTCTTTTTC 59.769 40.000 26.52 0.00 42.21 2.29
8273 12816 3.696051 ACGCATATGCATGTCCTTTCTTT 59.304 39.130 26.52 0.00 42.21 2.52
8324 12873 0.449388 GAAGCTTCACTCCATTGGCG 59.551 55.000 21.67 0.00 0.00 5.69
8338 12887 0.806868 CACGAACCATGCATGAAGCT 59.193 50.000 28.31 8.76 45.94 3.74
8446 12995 5.830991 AGAGAGAGAGAGAGAGAGAGAGTAC 59.169 48.000 0.00 0.00 0.00 2.73
8554 13110 1.714899 GGTACACGACCCATGCATGC 61.715 60.000 21.69 11.82 43.25 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.