Multiple sequence alignment - TraesCS7B01G284700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G284700 chr7B 100.000 4959 0 0 1 4959 518462361 518467319 0.000000e+00 9158.0
1 TraesCS7B01G284700 chr7B 91.741 896 53 6 3888 4782 123402275 123403150 0.000000e+00 1225.0
2 TraesCS7B01G284700 chr7B 82.343 1161 174 19 2632 3771 518676749 518675599 0.000000e+00 979.0
3 TraesCS7B01G284700 chr7B 77.510 1285 197 52 1160 2392 518678206 518676962 0.000000e+00 688.0
4 TraesCS7B01G284700 chr7B 87.692 65 2 1 3833 3897 474898528 474898470 2.480000e-08 71.3
5 TraesCS7B01G284700 chr7B 87.500 64 2 4 3834 3897 176240779 176240722 8.910000e-08 69.4
6 TraesCS7B01G284700 chr7A 92.610 2544 170 9 1172 3703 556557603 556560140 0.000000e+00 3640.0
7 TraesCS7B01G284700 chr7A 85.210 453 39 16 816 1261 556557180 556557611 1.640000e-119 440.0
8 TraesCS7B01G284700 chr7A 88.710 186 7 7 647 823 556556954 556557134 1.080000e-51 215.0
9 TraesCS7B01G284700 chr7A 84.305 223 22 3 319 538 556556183 556556395 6.510000e-49 206.0
10 TraesCS7B01G284700 chr3B 92.738 1019 57 7 3890 4906 107956420 107955417 0.000000e+00 1456.0
11 TraesCS7B01G284700 chr3B 93.661 978 47 2 3887 4852 498353771 498354745 0.000000e+00 1448.0
12 TraesCS7B01G284700 chr3B 90.999 1011 54 12 3891 4889 503034467 503033482 0.000000e+00 1328.0
13 TraesCS7B01G284700 chr3B 75.868 1094 185 40 1140 2177 487443326 487442256 7.460000e-133 484.0
14 TraesCS7B01G284700 chr5D 93.354 978 54 5 3890 4864 434725313 434724344 0.000000e+00 1435.0
15 TraesCS7B01G284700 chr6B 93.137 918 59 2 3893 4809 114516042 114516956 0.000000e+00 1343.0
16 TraesCS7B01G284700 chr6B 97.561 41 1 0 282 322 438303017 438303057 2.480000e-08 71.3
17 TraesCS7B01G284700 chr2B 92.818 919 61 3 3893 4807 212306442 212305525 0.000000e+00 1327.0
18 TraesCS7B01G284700 chr2B 88.784 1061 77 16 3893 4949 74214825 74213803 0.000000e+00 1262.0
19 TraesCS7B01G284700 chr2B 92.571 175 13 0 3891 4065 697662507 697662333 8.240000e-63 252.0
20 TraesCS7B01G284700 chr2B 94.667 150 8 0 4609 4758 212305524 212305375 2.980000e-57 233.0
21 TraesCS7B01G284700 chr2B 87.692 65 2 1 3833 3897 303165945 303165887 2.480000e-08 71.3
22 TraesCS7B01G284700 chr2B 97.561 41 1 0 281 321 727658999 727658959 2.480000e-08 71.3
23 TraesCS7B01G284700 chr4B 92.365 943 42 8 3893 4835 347392027 347391115 0.000000e+00 1315.0
24 TraesCS7B01G284700 chr1B 90.030 1003 87 6 3895 4889 363214432 363213435 0.000000e+00 1286.0
25 TraesCS7B01G284700 chr3A 77.977 1058 158 39 1173 2177 495074745 495073710 1.190000e-165 593.0
26 TraesCS7B01G284700 chr3A 79.262 569 97 17 2638 3191 724561286 724561848 1.300000e-100 377.0
27 TraesCS7B01G284700 chr3D 75.960 1094 184 38 1140 2177 373603416 373602346 1.600000e-134 490.0
28 TraesCS7B01G284700 chr3D 74.454 779 134 41 1461 2193 593655931 593655172 4.890000e-70 276.0
29 TraesCS7B01G284700 chr3D 76.144 306 61 8 1125 1424 593656237 593655938 3.090000e-32 150.0
30 TraesCS7B01G284700 chrUn 73.751 941 166 48 1455 2332 41925416 41926338 1.350000e-75 294.0
31 TraesCS7B01G284700 chr7D 96.296 54 1 1 321 374 489906471 489906523 2.460000e-13 87.9
32 TraesCS7B01G284700 chr6A 87.692 65 2 1 3833 3897 551996499 551996557 2.480000e-08 71.3
33 TraesCS7B01G284700 chr6A 86.154 65 3 1 3833 3897 595114966 595115024 1.150000e-06 65.8
34 TraesCS7B01G284700 chr4A 87.692 65 2 1 3833 3897 653041603 653041661 2.480000e-08 71.3
35 TraesCS7B01G284700 chr2D 87.692 65 2 1 3833 3897 328593173 328593115 2.480000e-08 71.3
36 TraesCS7B01G284700 chr6D 85.507 69 4 1 3829 3897 435349959 435350021 3.200000e-07 67.6
37 TraesCS7B01G284700 chr1D 86.154 65 3 1 3833 3897 316715636 316715694 1.150000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G284700 chr7B 518462361 518467319 4958 False 9158.00 9158 100.00000 1 4959 1 chr7B.!!$F2 4958
1 TraesCS7B01G284700 chr7B 123402275 123403150 875 False 1225.00 1225 91.74100 3888 4782 1 chr7B.!!$F1 894
2 TraesCS7B01G284700 chr7B 518675599 518678206 2607 True 833.50 979 79.92650 1160 3771 2 chr7B.!!$R3 2611
3 TraesCS7B01G284700 chr7A 556556183 556560140 3957 False 1125.25 3640 87.70875 319 3703 4 chr7A.!!$F1 3384
4 TraesCS7B01G284700 chr3B 107955417 107956420 1003 True 1456.00 1456 92.73800 3890 4906 1 chr3B.!!$R1 1016
5 TraesCS7B01G284700 chr3B 498353771 498354745 974 False 1448.00 1448 93.66100 3887 4852 1 chr3B.!!$F1 965
6 TraesCS7B01G284700 chr3B 503033482 503034467 985 True 1328.00 1328 90.99900 3891 4889 1 chr3B.!!$R3 998
7 TraesCS7B01G284700 chr3B 487442256 487443326 1070 True 484.00 484 75.86800 1140 2177 1 chr3B.!!$R2 1037
8 TraesCS7B01G284700 chr5D 434724344 434725313 969 True 1435.00 1435 93.35400 3890 4864 1 chr5D.!!$R1 974
9 TraesCS7B01G284700 chr6B 114516042 114516956 914 False 1343.00 1343 93.13700 3893 4809 1 chr6B.!!$F1 916
10 TraesCS7B01G284700 chr2B 74213803 74214825 1022 True 1262.00 1262 88.78400 3893 4949 1 chr2B.!!$R1 1056
11 TraesCS7B01G284700 chr2B 212305375 212306442 1067 True 780.00 1327 93.74250 3893 4807 2 chr2B.!!$R5 914
12 TraesCS7B01G284700 chr4B 347391115 347392027 912 True 1315.00 1315 92.36500 3893 4835 1 chr4B.!!$R1 942
13 TraesCS7B01G284700 chr1B 363213435 363214432 997 True 1286.00 1286 90.03000 3895 4889 1 chr1B.!!$R1 994
14 TraesCS7B01G284700 chr3A 495073710 495074745 1035 True 593.00 593 77.97700 1173 2177 1 chr3A.!!$R1 1004
15 TraesCS7B01G284700 chr3A 724561286 724561848 562 False 377.00 377 79.26200 2638 3191 1 chr3A.!!$F1 553
16 TraesCS7B01G284700 chr3D 373602346 373603416 1070 True 490.00 490 75.96000 1140 2177 1 chr3D.!!$R1 1037
17 TraesCS7B01G284700 chr3D 593655172 593656237 1065 True 213.00 276 75.29900 1125 2193 2 chr3D.!!$R2 1068
18 TraesCS7B01G284700 chrUn 41925416 41926338 922 False 294.00 294 73.75100 1455 2332 1 chrUn.!!$F1 877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 320 0.030369 AAGCCGCGTTACCGATCTAG 59.970 55.0 4.92 0.00 35.63 2.43 F
394 395 0.036388 CAGAATGCGGTACAGTGGGT 60.036 55.0 0.00 0.00 0.00 4.51 F
553 554 0.107268 TTGCAGAGACAGCAAGCTGA 59.893 50.0 27.17 1.15 46.13 4.26 F
979 1497 0.109272 CCATCTTGCAACAGCAGCAG 60.109 55.0 0.00 0.00 43.75 4.24 F
1096 1630 0.182537 CCACCACCACCACTGAAGAA 59.817 55.0 0.00 0.00 0.00 2.52 F
2609 3380 0.395311 TGTCCTACTCCTACAGGCCG 60.395 60.0 0.00 0.00 34.44 6.13 F
3781 4588 0.039035 GGCTTGTGGTGGATTGGGTA 59.961 55.0 0.00 0.00 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1343 1970 0.039180 GGTCGGGGAACAGGGAAAAT 59.961 55.000 0.00 0.0 0.00 1.82 R
2209 2923 1.079819 CTGAAGGCCGACATCACGT 60.080 57.895 0.00 0.0 0.00 4.49 R
2541 3309 0.725686 GCTGCAGCATCACAGTGTAG 59.274 55.000 33.36 0.0 41.59 2.74 R
2609 3380 0.175989 AGATTCGCCGTTCTTCCTCC 59.824 55.000 0.00 0.0 0.00 4.30 R
3082 3874 1.209383 CCGCTCGTCGAGTCAAGAA 59.791 57.895 22.61 0.0 41.67 2.52 R
3784 4591 0.374758 CACGATGCCACATGCTACAC 59.625 55.000 0.00 0.0 42.00 2.90 R
4707 5544 1.603739 GGGCAAGTCCGGCTTCTTT 60.604 57.895 7.99 0.0 34.69 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.398549 CGTTGTTGACGTATGTGGATTT 57.601 40.909 0.00 0.00 46.49 2.17
30 31 4.778904 CGTTGTTGACGTATGTGGATTTT 58.221 39.130 0.00 0.00 46.49 1.82
31 32 4.610951 CGTTGTTGACGTATGTGGATTTTG 59.389 41.667 0.00 0.00 46.49 2.44
32 33 5.516090 GTTGTTGACGTATGTGGATTTTGT 58.484 37.500 0.00 0.00 0.00 2.83
33 34 6.564312 CGTTGTTGACGTATGTGGATTTTGTA 60.564 38.462 0.00 0.00 46.49 2.41
34 35 6.862711 TGTTGACGTATGTGGATTTTGTAA 57.137 33.333 0.00 0.00 0.00 2.41
35 36 7.260558 TGTTGACGTATGTGGATTTTGTAAA 57.739 32.000 0.00 0.00 0.00 2.01
36 37 7.133513 TGTTGACGTATGTGGATTTTGTAAAC 58.866 34.615 0.00 0.00 0.00 2.01
37 38 6.862711 TGACGTATGTGGATTTTGTAAACA 57.137 33.333 0.00 0.00 0.00 2.83
38 39 7.441890 TGACGTATGTGGATTTTGTAAACAT 57.558 32.000 0.00 0.00 35.70 2.71
39 40 7.877003 TGACGTATGTGGATTTTGTAAACATT 58.123 30.769 0.00 0.00 33.67 2.71
40 41 8.018520 TGACGTATGTGGATTTTGTAAACATTC 58.981 33.333 0.00 0.00 33.67 2.67
41 42 7.877003 ACGTATGTGGATTTTGTAAACATTCA 58.123 30.769 0.00 0.00 33.67 2.57
42 43 8.020819 ACGTATGTGGATTTTGTAAACATTCAG 58.979 33.333 0.00 0.00 33.67 3.02
43 44 7.484641 CGTATGTGGATTTTGTAAACATTCAGG 59.515 37.037 0.00 0.00 33.67 3.86
44 45 5.537188 TGTGGATTTTGTAAACATTCAGGC 58.463 37.500 0.00 0.00 0.00 4.85
45 46 5.304101 TGTGGATTTTGTAAACATTCAGGCT 59.696 36.000 0.00 0.00 0.00 4.58
46 47 5.863935 GTGGATTTTGTAAACATTCAGGCTC 59.136 40.000 0.00 0.00 0.00 4.70
47 48 5.774690 TGGATTTTGTAAACATTCAGGCTCT 59.225 36.000 0.00 0.00 0.00 4.09
48 49 6.071952 TGGATTTTGTAAACATTCAGGCTCTC 60.072 38.462 0.00 0.00 0.00 3.20
49 50 5.356882 TTTTGTAAACATTCAGGCTCTCG 57.643 39.130 0.00 0.00 0.00 4.04
50 51 2.346803 TGTAAACATTCAGGCTCTCGC 58.653 47.619 0.00 0.00 0.00 5.03
51 52 2.028112 TGTAAACATTCAGGCTCTCGCT 60.028 45.455 0.00 0.00 36.09 4.93
52 53 3.194755 TGTAAACATTCAGGCTCTCGCTA 59.805 43.478 0.00 0.00 36.09 4.26
53 54 3.550437 AAACATTCAGGCTCTCGCTAT 57.450 42.857 0.00 0.00 36.09 2.97
54 55 2.810439 ACATTCAGGCTCTCGCTATC 57.190 50.000 0.00 0.00 36.09 2.08
55 56 2.315176 ACATTCAGGCTCTCGCTATCT 58.685 47.619 0.00 0.00 36.09 1.98
56 57 2.295909 ACATTCAGGCTCTCGCTATCTC 59.704 50.000 0.00 0.00 36.09 2.75
57 58 2.058593 TTCAGGCTCTCGCTATCTCA 57.941 50.000 0.00 0.00 36.09 3.27
58 59 2.284754 TCAGGCTCTCGCTATCTCAT 57.715 50.000 0.00 0.00 36.09 2.90
59 60 1.885233 TCAGGCTCTCGCTATCTCATG 59.115 52.381 0.00 0.00 36.09 3.07
60 61 1.885233 CAGGCTCTCGCTATCTCATGA 59.115 52.381 0.00 0.00 36.09 3.07
61 62 2.295629 CAGGCTCTCGCTATCTCATGAA 59.704 50.000 0.00 0.00 36.09 2.57
62 63 2.295909 AGGCTCTCGCTATCTCATGAAC 59.704 50.000 0.00 0.00 36.09 3.18
63 64 2.315011 GCTCTCGCTATCTCATGAACG 58.685 52.381 0.00 0.00 0.00 3.95
64 65 2.315011 CTCTCGCTATCTCATGAACGC 58.685 52.381 0.00 0.00 0.00 4.84
65 66 1.048494 CTCGCTATCTCATGAACGCG 58.952 55.000 3.53 3.53 42.29 6.01
66 67 0.934901 TCGCTATCTCATGAACGCGC 60.935 55.000 5.73 0.00 41.41 6.86
67 68 0.936764 CGCTATCTCATGAACGCGCT 60.937 55.000 5.73 0.00 37.81 5.92
68 69 1.663161 CGCTATCTCATGAACGCGCTA 60.663 52.381 5.73 0.00 37.81 4.26
69 70 2.394708 GCTATCTCATGAACGCGCTAA 58.605 47.619 5.73 0.00 0.00 3.09
70 71 2.794910 GCTATCTCATGAACGCGCTAAA 59.205 45.455 5.73 0.00 0.00 1.85
71 72 3.362110 GCTATCTCATGAACGCGCTAAAC 60.362 47.826 5.73 0.00 0.00 2.01
72 73 2.363788 TCTCATGAACGCGCTAAACT 57.636 45.000 5.73 0.00 0.00 2.66
73 74 2.683968 TCTCATGAACGCGCTAAACTT 58.316 42.857 5.73 0.00 0.00 2.66
74 75 2.411748 TCTCATGAACGCGCTAAACTTG 59.588 45.455 5.73 2.32 0.00 3.16
75 76 2.409012 TCATGAACGCGCTAAACTTGA 58.591 42.857 5.73 4.70 0.00 3.02
76 77 3.000041 TCATGAACGCGCTAAACTTGAT 59.000 40.909 5.73 0.00 0.00 2.57
77 78 3.435327 TCATGAACGCGCTAAACTTGATT 59.565 39.130 5.73 0.00 0.00 2.57
78 79 3.889196 TGAACGCGCTAAACTTGATTT 57.111 38.095 5.73 0.00 0.00 2.17
79 80 4.217754 TGAACGCGCTAAACTTGATTTT 57.782 36.364 5.73 0.00 0.00 1.82
80 81 3.971871 TGAACGCGCTAAACTTGATTTTG 59.028 39.130 5.73 0.00 0.00 2.44
81 82 2.315901 ACGCGCTAAACTTGATTTTGC 58.684 42.857 5.73 0.00 43.18 3.68
82 83 1.648681 CGCGCTAAACTTGATTTTGCC 59.351 47.619 5.56 0.00 43.56 4.52
83 84 2.668279 CGCGCTAAACTTGATTTTGCCT 60.668 45.455 5.56 0.00 43.56 4.75
84 85 3.317150 GCGCTAAACTTGATTTTGCCTT 58.683 40.909 0.00 0.00 43.56 4.35
85 86 4.481463 GCGCTAAACTTGATTTTGCCTTA 58.519 39.130 0.00 0.00 43.56 2.69
86 87 5.102313 GCGCTAAACTTGATTTTGCCTTAT 58.898 37.500 0.00 0.00 43.56 1.73
87 88 5.004726 GCGCTAAACTTGATTTTGCCTTATG 59.995 40.000 0.00 0.00 43.56 1.90
88 89 6.321717 CGCTAAACTTGATTTTGCCTTATGA 58.678 36.000 1.28 0.00 43.56 2.15
89 90 6.974622 CGCTAAACTTGATTTTGCCTTATGAT 59.025 34.615 1.28 0.00 43.56 2.45
90 91 8.128582 CGCTAAACTTGATTTTGCCTTATGATA 58.871 33.333 1.28 0.00 43.56 2.15
91 92 9.801873 GCTAAACTTGATTTTGCCTTATGATAA 57.198 29.630 0.00 0.00 41.49 1.75
96 97 9.412460 ACTTGATTTTGCCTTATGATAATCTCA 57.588 29.630 0.00 0.00 38.53 3.27
99 100 8.799367 TGATTTTGCCTTATGATAATCTCATGG 58.201 33.333 0.00 0.00 44.48 3.66
100 101 8.716674 ATTTTGCCTTATGATAATCTCATGGT 57.283 30.769 0.00 0.00 44.48 3.55
101 102 7.514784 TTTGCCTTATGATAATCTCATGGTG 57.485 36.000 0.00 0.00 44.48 4.17
102 103 6.191657 TGCCTTATGATAATCTCATGGTGT 57.808 37.500 0.00 0.00 44.48 4.16
103 104 6.604171 TGCCTTATGATAATCTCATGGTGTT 58.396 36.000 0.00 0.00 44.48 3.32
104 105 6.487668 TGCCTTATGATAATCTCATGGTGTTG 59.512 38.462 0.00 0.00 44.48 3.33
105 106 6.488006 GCCTTATGATAATCTCATGGTGTTGT 59.512 38.462 0.00 0.00 44.48 3.32
106 107 7.013655 GCCTTATGATAATCTCATGGTGTTGTT 59.986 37.037 0.00 0.00 44.48 2.83
107 108 8.347771 CCTTATGATAATCTCATGGTGTTGTTG 58.652 37.037 0.00 0.00 44.48 3.33
108 109 8.806429 TTATGATAATCTCATGGTGTTGTTGT 57.194 30.769 0.00 0.00 44.48 3.32
109 110 9.898152 TTATGATAATCTCATGGTGTTGTTGTA 57.102 29.630 0.00 0.00 44.48 2.41
110 111 7.609760 TGATAATCTCATGGTGTTGTTGTAC 57.390 36.000 0.00 0.00 0.00 2.90
111 112 7.394016 TGATAATCTCATGGTGTTGTTGTACT 58.606 34.615 0.00 0.00 0.00 2.73
112 113 8.536175 TGATAATCTCATGGTGTTGTTGTACTA 58.464 33.333 0.00 0.00 0.00 1.82
113 114 9.547753 GATAATCTCATGGTGTTGTTGTACTAT 57.452 33.333 0.00 0.00 0.00 2.12
194 195 9.871238 ATCGTGTTTGAGTAAGTATGTTAAGAT 57.129 29.630 0.00 0.00 0.00 2.40
195 196 9.701098 TCGTGTTTGAGTAAGTATGTTAAGATT 57.299 29.630 0.00 0.00 0.00 2.40
216 217 9.819267 AAGATTACTACTAACTTGAGCATTACC 57.181 33.333 0.00 0.00 0.00 2.85
217 218 9.203163 AGATTACTACTAACTTGAGCATTACCT 57.797 33.333 0.00 0.00 0.00 3.08
220 221 7.713734 ACTACTAACTTGAGCATTACCTACA 57.286 36.000 0.00 0.00 0.00 2.74
221 222 8.307582 ACTACTAACTTGAGCATTACCTACAT 57.692 34.615 0.00 0.00 0.00 2.29
222 223 8.198109 ACTACTAACTTGAGCATTACCTACATG 58.802 37.037 0.00 0.00 0.00 3.21
223 224 7.182817 ACTAACTTGAGCATTACCTACATGA 57.817 36.000 0.00 0.00 0.00 3.07
224 225 7.042335 ACTAACTTGAGCATTACCTACATGAC 58.958 38.462 0.00 0.00 0.00 3.06
225 226 4.770795 ACTTGAGCATTACCTACATGACC 58.229 43.478 0.00 0.00 0.00 4.02
226 227 4.225042 ACTTGAGCATTACCTACATGACCA 59.775 41.667 0.00 0.00 0.00 4.02
227 228 4.137116 TGAGCATTACCTACATGACCAC 57.863 45.455 0.00 0.00 0.00 4.16
228 229 3.517500 TGAGCATTACCTACATGACCACA 59.482 43.478 0.00 0.00 0.00 4.17
229 230 4.019771 TGAGCATTACCTACATGACCACAA 60.020 41.667 0.00 0.00 0.00 3.33
230 231 4.261801 AGCATTACCTACATGACCACAAC 58.738 43.478 0.00 0.00 0.00 3.32
231 232 4.006989 GCATTACCTACATGACCACAACA 58.993 43.478 0.00 0.00 0.00 3.33
232 233 4.640201 GCATTACCTACATGACCACAACAT 59.360 41.667 0.00 0.00 0.00 2.71
233 234 5.820423 GCATTACCTACATGACCACAACATA 59.180 40.000 0.00 0.00 0.00 2.29
234 235 6.017934 GCATTACCTACATGACCACAACATAG 60.018 42.308 0.00 0.00 0.00 2.23
235 236 4.487714 ACCTACATGACCACAACATAGG 57.512 45.455 0.00 0.00 36.19 2.57
236 237 3.199946 ACCTACATGACCACAACATAGGG 59.800 47.826 0.00 0.00 35.29 3.53
237 238 3.454447 CCTACATGACCACAACATAGGGA 59.546 47.826 0.00 0.00 31.26 4.20
238 239 3.350219 ACATGACCACAACATAGGGAC 57.650 47.619 0.00 0.00 0.00 4.46
239 240 2.026262 ACATGACCACAACATAGGGACC 60.026 50.000 0.00 0.00 0.00 4.46
240 241 0.611200 TGACCACAACATAGGGACCG 59.389 55.000 0.00 0.00 0.00 4.79
241 242 0.107848 GACCACAACATAGGGACCGG 60.108 60.000 0.00 0.00 0.00 5.28
242 243 1.451387 CCACAACATAGGGACCGGC 60.451 63.158 0.00 0.00 0.00 6.13
243 244 1.298340 CACAACATAGGGACCGGCA 59.702 57.895 0.00 0.00 0.00 5.69
244 245 1.024579 CACAACATAGGGACCGGCAC 61.025 60.000 0.00 0.00 0.00 5.01
245 246 1.451387 CAACATAGGGACCGGCACC 60.451 63.158 0.00 3.53 0.00 5.01
259 260 3.434319 CACCCTCGCGCTTGCATT 61.434 61.111 5.56 0.00 39.07 3.56
260 261 2.106074 CACCCTCGCGCTTGCATTA 61.106 57.895 5.56 0.00 39.07 1.90
261 262 2.106683 ACCCTCGCGCTTGCATTAC 61.107 57.895 5.56 0.00 39.07 1.89
262 263 2.709475 CCTCGCGCTTGCATTACC 59.291 61.111 5.56 0.00 39.07 2.85
263 264 1.815421 CCTCGCGCTTGCATTACCT 60.815 57.895 5.56 0.00 39.07 3.08
264 265 0.529773 CCTCGCGCTTGCATTACCTA 60.530 55.000 5.56 0.00 39.07 3.08
265 266 0.577269 CTCGCGCTTGCATTACCTAC 59.423 55.000 5.56 0.00 39.07 3.18
266 267 0.108567 TCGCGCTTGCATTACCTACA 60.109 50.000 5.56 0.00 39.07 2.74
267 268 0.937304 CGCGCTTGCATTACCTACAT 59.063 50.000 5.56 0.00 39.07 2.29
268 269 1.333169 CGCGCTTGCATTACCTACATG 60.333 52.381 5.56 0.00 39.07 3.21
269 270 1.939934 GCGCTTGCATTACCTACATGA 59.060 47.619 0.00 0.00 38.92 3.07
270 271 2.286418 GCGCTTGCATTACCTACATGAC 60.286 50.000 0.00 0.00 38.92 3.06
271 272 2.287915 CGCTTGCATTACCTACATGACC 59.712 50.000 0.00 0.00 0.00 4.02
272 273 3.278574 GCTTGCATTACCTACATGACCA 58.721 45.455 0.00 0.00 0.00 4.02
273 274 3.885297 GCTTGCATTACCTACATGACCAT 59.115 43.478 0.00 0.00 0.00 3.55
274 275 5.063204 GCTTGCATTACCTACATGACCATA 58.937 41.667 0.00 0.00 0.00 2.74
275 276 5.530915 GCTTGCATTACCTACATGACCATAA 59.469 40.000 0.00 0.00 0.00 1.90
276 277 6.513393 GCTTGCATTACCTACATGACCATAAC 60.513 42.308 0.00 0.00 0.00 1.89
277 278 5.995446 TGCATTACCTACATGACCATAACA 58.005 37.500 0.00 0.00 0.00 2.41
278 279 6.600388 TGCATTACCTACATGACCATAACAT 58.400 36.000 0.00 0.00 0.00 2.71
279 280 7.740805 TGCATTACCTACATGACCATAACATA 58.259 34.615 0.00 0.00 0.00 2.29
280 281 7.877612 TGCATTACCTACATGACCATAACATAG 59.122 37.037 0.00 0.00 0.00 2.23
281 282 7.334421 GCATTACCTACATGACCATAACATAGG 59.666 40.741 0.00 0.00 32.72 2.57
282 283 5.825593 ACCTACATGACCATAACATAGGG 57.174 43.478 0.00 0.00 31.49 3.53
283 284 5.473273 ACCTACATGACCATAACATAGGGA 58.527 41.667 0.00 0.00 31.49 4.20
284 285 5.307196 ACCTACATGACCATAACATAGGGAC 59.693 44.000 0.00 0.00 31.49 4.46
285 286 4.706842 ACATGACCATAACATAGGGACC 57.293 45.455 0.00 0.00 32.98 4.46
286 287 3.071023 ACATGACCATAACATAGGGACCG 59.929 47.826 0.00 0.00 32.98 4.79
287 288 2.043992 TGACCATAACATAGGGACCGG 58.956 52.381 0.00 0.00 32.98 5.28
288 289 0.763035 ACCATAACATAGGGACCGGC 59.237 55.000 0.00 0.00 32.98 6.13
289 290 0.762418 CCATAACATAGGGACCGGCA 59.238 55.000 0.00 0.00 0.00 5.69
290 291 1.542547 CCATAACATAGGGACCGGCAC 60.543 57.143 0.00 0.00 0.00 5.01
291 292 0.763035 ATAACATAGGGACCGGCACC 59.237 55.000 0.00 3.53 0.00 5.01
315 316 2.510691 CCAAGCCGCGTTACCGAT 60.511 61.111 4.92 0.00 35.63 4.18
316 317 2.522638 CCAAGCCGCGTTACCGATC 61.523 63.158 4.92 0.00 35.63 3.69
317 318 1.518572 CAAGCCGCGTTACCGATCT 60.519 57.895 4.92 0.00 35.63 2.75
318 319 0.248743 CAAGCCGCGTTACCGATCTA 60.249 55.000 4.92 0.00 35.63 1.98
319 320 0.030369 AAGCCGCGTTACCGATCTAG 59.970 55.000 4.92 0.00 35.63 2.43
320 321 1.099879 AGCCGCGTTACCGATCTAGT 61.100 55.000 4.92 0.00 35.63 2.57
321 322 0.588252 GCCGCGTTACCGATCTAGTA 59.412 55.000 4.92 0.00 35.63 1.82
322 323 1.002468 GCCGCGTTACCGATCTAGTAA 60.002 52.381 4.92 2.10 35.63 2.24
323 324 2.913613 CCGCGTTACCGATCTAGTAAG 58.086 52.381 4.92 3.14 35.63 2.34
324 325 2.305291 CGCGTTACCGATCTAGTAAGC 58.695 52.381 0.00 9.53 35.63 3.09
325 326 2.286595 CGCGTTACCGATCTAGTAAGCA 60.287 50.000 0.00 0.00 35.63 3.91
326 327 3.608707 CGCGTTACCGATCTAGTAAGCAT 60.609 47.826 0.00 0.00 35.63 3.79
333 334 9.903682 GTTACCGATCTAGTAAGCATTAACATA 57.096 33.333 5.68 0.00 30.59 2.29
393 394 2.767536 CAGAATGCGGTACAGTGGG 58.232 57.895 0.00 0.00 0.00 4.61
394 395 0.036388 CAGAATGCGGTACAGTGGGT 60.036 55.000 0.00 0.00 0.00 4.51
401 402 1.802365 GCGGTACAGTGGGTAAAAGTG 59.198 52.381 0.00 0.00 32.72 3.16
403 404 3.731089 CGGTACAGTGGGTAAAAGTGAA 58.269 45.455 0.00 0.00 32.72 3.18
444 445 1.845809 GCACGAGGCTTGTCAGGTTG 61.846 60.000 3.86 0.00 40.25 3.77
445 446 1.598130 ACGAGGCTTGTCAGGTTGC 60.598 57.895 0.18 0.00 0.00 4.17
446 447 1.302033 CGAGGCTTGTCAGGTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
447 448 1.294659 CGAGGCTTGTCAGGTTGCTC 61.295 60.000 0.00 0.00 0.00 4.26
448 449 0.250467 GAGGCTTGTCAGGTTGCTCA 60.250 55.000 0.00 0.00 0.00 4.26
449 450 0.403271 AGGCTTGTCAGGTTGCTCAT 59.597 50.000 0.00 0.00 0.00 2.90
450 451 0.807496 GGCTTGTCAGGTTGCTCATC 59.193 55.000 0.00 0.00 0.00 2.92
451 452 1.527034 GCTTGTCAGGTTGCTCATCA 58.473 50.000 0.00 0.00 0.00 3.07
452 453 2.089980 GCTTGTCAGGTTGCTCATCAT 58.910 47.619 0.00 0.00 0.00 2.45
453 454 2.097142 GCTTGTCAGGTTGCTCATCATC 59.903 50.000 0.00 0.00 0.00 2.92
480 481 4.500603 AGTTTGCAAGCTCTCTCAAATG 57.499 40.909 10.35 0.00 32.07 2.32
499 500 0.436531 GCGAGCTTCGTCTTCAACAG 59.563 55.000 7.27 0.00 42.81 3.16
503 504 3.671971 CGAGCTTCGTCTTCAACAGAGAT 60.672 47.826 0.00 0.00 34.72 2.75
506 507 3.990469 GCTTCGTCTTCAACAGAGATGAA 59.010 43.478 8.11 8.11 43.34 2.57
515 516 6.624352 TTCAACAGAGATGAAGAAAACCAG 57.376 37.500 0.00 0.00 33.15 4.00
525 526 6.872020 AGATGAAGAAAACCAGCAAAATCATG 59.128 34.615 0.00 0.00 0.00 3.07
526 527 6.159299 TGAAGAAAACCAGCAAAATCATGA 57.841 33.333 0.00 0.00 0.00 3.07
531 532 5.649782 AAACCAGCAAAATCATGAGTAGG 57.350 39.130 0.09 0.00 0.00 3.18
532 533 4.307032 ACCAGCAAAATCATGAGTAGGT 57.693 40.909 0.09 0.00 0.00 3.08
538 539 5.887598 AGCAAAATCATGAGTAGGTATTGCA 59.112 36.000 23.60 0.00 42.14 4.08
539 540 6.039047 AGCAAAATCATGAGTAGGTATTGCAG 59.961 38.462 23.60 0.85 42.14 4.41
540 541 6.038603 GCAAAATCATGAGTAGGTATTGCAGA 59.961 38.462 19.25 0.00 40.11 4.26
541 542 7.637229 CAAAATCATGAGTAGGTATTGCAGAG 58.363 38.462 0.09 0.00 0.00 3.35
544 545 4.956075 TCATGAGTAGGTATTGCAGAGACA 59.044 41.667 0.00 0.00 0.00 3.41
545 546 4.991153 TGAGTAGGTATTGCAGAGACAG 57.009 45.455 0.00 0.00 0.00 3.51
546 547 3.131223 TGAGTAGGTATTGCAGAGACAGC 59.869 47.826 0.00 0.00 0.00 4.40
552 553 2.625375 TTGCAGAGACAGCAAGCTG 58.375 52.632 19.74 19.74 46.13 4.24
553 554 0.107268 TTGCAGAGACAGCAAGCTGA 59.893 50.000 27.17 1.15 46.13 4.26
554 555 0.323957 TGCAGAGACAGCAAGCTGAT 59.676 50.000 27.17 15.33 46.30 2.90
555 556 1.551883 TGCAGAGACAGCAAGCTGATA 59.448 47.619 27.17 3.85 46.30 2.15
556 557 2.027837 TGCAGAGACAGCAAGCTGATAA 60.028 45.455 27.17 4.10 46.30 1.75
557 558 3.204526 GCAGAGACAGCAAGCTGATAAT 58.795 45.455 27.17 5.83 46.30 1.28
559 560 4.210955 GCAGAGACAGCAAGCTGATAATAC 59.789 45.833 27.17 11.99 46.30 1.89
560 561 4.443725 CAGAGACAGCAAGCTGATAATACG 59.556 45.833 27.17 6.66 46.30 3.06
562 563 2.213499 ACAGCAAGCTGATAATACGCC 58.787 47.619 27.17 0.00 46.30 5.68
563 564 1.532868 CAGCAAGCTGATAATACGCCC 59.467 52.381 16.75 0.00 46.30 6.13
565 683 0.512952 CAAGCTGATAATACGCCCGC 59.487 55.000 0.00 0.00 0.00 6.13
600 718 2.750815 CAAAGATGGACGGACGGAC 58.249 57.895 0.00 0.00 0.00 4.79
601 719 1.076533 CAAAGATGGACGGACGGACG 61.077 60.000 0.00 0.00 40.31 4.79
603 721 3.136123 GATGGACGGACGGACGGA 61.136 66.667 6.00 0.00 38.39 4.69
604 722 3.407046 GATGGACGGACGGACGGAC 62.407 68.421 6.00 0.00 38.39 4.79
612 730 3.621892 GACGGACGGACGGTCTTGG 62.622 68.421 12.33 5.73 45.35 3.61
613 731 4.430765 CGGACGGACGGTCTTGGG 62.431 72.222 12.33 0.00 45.35 4.12
614 732 3.308705 GGACGGACGGTCTTGGGT 61.309 66.667 12.33 1.61 45.35 4.51
616 734 2.522436 ACGGACGGTCTTGGGTCA 60.522 61.111 8.23 0.00 34.87 4.02
617 735 2.048503 CGGACGGTCTTGGGTCAC 60.049 66.667 8.23 0.00 34.87 3.67
618 736 2.346365 GGACGGTCTTGGGTCACC 59.654 66.667 8.23 0.00 34.87 4.02
625 743 2.759985 TCTTGGGTCACCAGGAGAC 58.240 57.895 8.49 8.49 46.74 3.36
626 744 1.185618 TCTTGGGTCACCAGGAGACG 61.186 60.000 10.61 0.00 46.74 4.18
645 1096 4.475135 GCTCCGCCTCCCAAGTCC 62.475 72.222 0.00 0.00 0.00 3.85
664 1120 0.865111 CATTTGTTGCTCCGACGACA 59.135 50.000 0.00 0.00 31.96 4.35
669 1125 1.901948 TTGCTCCGACGACAGACCT 60.902 57.895 0.00 0.00 0.00 3.85
698 1158 4.287781 TCCGACGGCGTTGCTGAA 62.288 61.111 21.71 3.94 38.46 3.02
754 1214 2.158534 AGGGCATCTAGTCATCTCGTCT 60.159 50.000 0.00 0.00 0.00 4.18
760 1220 6.266323 GCATCTAGTCATCTCGTCTACAAAA 58.734 40.000 0.00 0.00 0.00 2.44
761 1221 6.920758 GCATCTAGTCATCTCGTCTACAAAAT 59.079 38.462 0.00 0.00 0.00 1.82
762 1222 7.096271 GCATCTAGTCATCTCGTCTACAAAATG 60.096 40.741 0.00 0.00 0.00 2.32
763 1223 6.266323 TCTAGTCATCTCGTCTACAAAATGC 58.734 40.000 0.00 0.00 0.00 3.56
764 1224 4.820897 AGTCATCTCGTCTACAAAATGCA 58.179 39.130 0.00 0.00 0.00 3.96
765 1225 4.627467 AGTCATCTCGTCTACAAAATGCAC 59.373 41.667 0.00 0.00 0.00 4.57
776 1236 7.253783 CGTCTACAAAATGCACTACTATGTCTG 60.254 40.741 0.00 0.00 0.00 3.51
802 1262 1.278637 GAGTTGGGACGCGTTGTTG 59.721 57.895 15.53 0.00 0.00 3.33
809 1269 3.114647 GACGCGTTGTTGGTTGGCA 62.115 57.895 15.53 0.00 0.00 4.92
834 1347 2.038426 TCAGTCCACATGTTCGGTCAAT 59.962 45.455 0.00 0.00 0.00 2.57
872 1385 1.513158 CTCGAGCACGGGAACTCAT 59.487 57.895 0.00 0.00 43.41 2.90
873 1386 0.526524 CTCGAGCACGGGAACTCATC 60.527 60.000 0.00 0.00 43.41 2.92
874 1387 1.215382 CGAGCACGGGAACTCATCA 59.785 57.895 0.00 0.00 35.72 3.07
875 1388 0.803768 CGAGCACGGGAACTCATCAG 60.804 60.000 0.00 0.00 35.72 2.90
876 1389 0.460987 GAGCACGGGAACTCATCAGG 60.461 60.000 0.00 0.00 32.98 3.86
877 1390 0.904865 AGCACGGGAACTCATCAGGA 60.905 55.000 0.00 0.00 0.00 3.86
878 1391 0.179000 GCACGGGAACTCATCAGGAT 59.821 55.000 0.00 0.00 0.00 3.24
903 1416 3.320541 AGGATTCAGGACACGATCAGATC 59.679 47.826 0.00 0.00 0.00 2.75
912 1430 4.022503 GGACACGATCAGATCAGATCATCA 60.023 45.833 23.21 0.00 43.61 3.07
917 1435 5.048573 ACGATCAGATCAGATCATCAGACAG 60.049 44.000 23.21 10.13 43.61 3.51
924 1442 3.069729 TCAGATCATCAGACAGCCATCAG 59.930 47.826 0.00 0.00 0.00 2.90
958 1476 1.880027 GAAAGTCAAGCCATTCCACGT 59.120 47.619 0.00 0.00 0.00 4.49
959 1477 1.981256 AAGTCAAGCCATTCCACGTT 58.019 45.000 0.00 0.00 0.00 3.99
966 1484 1.004745 AGCCATTCCACGTTCCATCTT 59.995 47.619 0.00 0.00 0.00 2.40
970 1488 1.974265 TTCCACGTTCCATCTTGCAA 58.026 45.000 0.00 0.00 0.00 4.08
979 1497 0.109272 CCATCTTGCAACAGCAGCAG 60.109 55.000 0.00 0.00 43.75 4.24
988 1506 0.976641 AACAGCAGCAGCCACTAGTA 59.023 50.000 0.00 0.00 43.56 1.82
1013 1531 4.380841 ACTGGAGTGAATATAAACGCGA 57.619 40.909 15.93 0.00 0.00 5.87
1014 1532 4.945246 ACTGGAGTGAATATAAACGCGAT 58.055 39.130 15.93 0.00 0.00 4.58
1015 1533 6.080648 ACTGGAGTGAATATAAACGCGATA 57.919 37.500 15.93 5.90 0.00 2.92
1016 1534 6.688578 ACTGGAGTGAATATAAACGCGATAT 58.311 36.000 15.93 13.59 0.00 1.63
1017 1535 6.586463 ACTGGAGTGAATATAAACGCGATATG 59.414 38.462 15.93 0.00 0.00 1.78
1018 1536 6.683715 TGGAGTGAATATAAACGCGATATGA 58.316 36.000 15.93 0.00 0.00 2.15
1019 1537 6.806739 TGGAGTGAATATAAACGCGATATGAG 59.193 38.462 15.93 0.00 0.00 2.90
1061 1595 0.608640 ACCAGCTCCGTCTACCAAAG 59.391 55.000 0.00 0.00 0.00 2.77
1085 1619 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1086 1620 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1087 1621 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
1088 1622 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
1089 1623 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
1090 1624 2.694616 ACCACCACCACCACCACT 60.695 61.111 0.00 0.00 0.00 4.00
1091 1625 2.203337 CCACCACCACCACCACTG 60.203 66.667 0.00 0.00 0.00 3.66
1092 1626 2.751731 CCACCACCACCACCACTGA 61.752 63.158 0.00 0.00 0.00 3.41
1093 1627 1.225983 CACCACCACCACCACTGAA 59.774 57.895 0.00 0.00 0.00 3.02
1094 1628 0.819259 CACCACCACCACCACTGAAG 60.819 60.000 0.00 0.00 0.00 3.02
1095 1629 0.986019 ACCACCACCACCACTGAAGA 60.986 55.000 0.00 0.00 0.00 2.87
1096 1630 0.182537 CCACCACCACCACTGAAGAA 59.817 55.000 0.00 0.00 0.00 2.52
1097 1631 1.202927 CCACCACCACCACTGAAGAAT 60.203 52.381 0.00 0.00 0.00 2.40
1101 1635 2.571653 CCACCACCACTGAAGAATCCTA 59.428 50.000 0.00 0.00 0.00 2.94
1105 1639 2.503356 CACCACTGAAGAATCCTAGCCT 59.497 50.000 0.00 0.00 0.00 4.58
1107 1641 2.503356 CCACTGAAGAATCCTAGCCTGT 59.497 50.000 0.00 0.00 0.00 4.00
1137 1671 3.269178 CACCTCATCTTGCTTCTCCTTC 58.731 50.000 0.00 0.00 0.00 3.46
1138 1672 3.055240 CACCTCATCTTGCTTCTCCTTCT 60.055 47.826 0.00 0.00 0.00 2.85
1188 1803 2.279073 CCCGCTCCTACTCCTCCA 59.721 66.667 0.00 0.00 0.00 3.86
1352 1979 1.017387 GCTACCGCTCATTTTCCCTG 58.983 55.000 0.00 0.00 0.00 4.45
1476 2106 2.075338 GAAACCGCGGTAATTACACCA 58.925 47.619 34.44 0.00 38.61 4.17
1487 2117 1.053424 ATTACACCATCCCCGCGTAT 58.947 50.000 4.92 0.00 0.00 3.06
1650 2280 3.774959 CTCGCCGATCCCTTCGTGG 62.775 68.421 0.00 0.00 46.65 4.94
1659 2289 2.030562 CCTTCGTGGACGGCAGTT 59.969 61.111 0.00 0.00 40.29 3.16
1856 2504 1.204704 TCGTACAGGTTGCAGGATCAG 59.795 52.381 0.00 0.00 0.00 2.90
1899 2550 3.410516 CGCGGATGCACGTCAACA 61.411 61.111 0.00 0.00 42.97 3.33
1905 2556 1.675714 GGATGCACGTCAACAGGATGA 60.676 52.381 0.00 0.00 39.69 2.92
2067 2754 3.320879 CTCAGAGCATGCCGGGTGT 62.321 63.158 15.66 0.00 0.00 4.16
2209 2923 2.764128 GGCTCATGGGAGGACCGA 60.764 66.667 0.00 0.00 44.64 4.69
2239 2980 1.811266 CCTTCAGCATCCACGACCG 60.811 63.158 0.00 0.00 0.00 4.79
2291 3038 1.795768 ACAACGACACGATGCTTGAT 58.204 45.000 0.00 0.00 33.06 2.57
2355 3105 3.142838 GATCGTTCCCGGTCCCGA 61.143 66.667 7.42 4.73 38.29 5.14
2399 3152 0.960364 GGCTCCATTTCTTCGTGGCA 60.960 55.000 0.00 0.00 35.43 4.92
2550 3318 4.560136 ATCAGCTACGATCTACACTGTG 57.440 45.455 6.19 6.19 0.00 3.66
2556 3324 3.156511 ACGATCTACACTGTGATGCTG 57.843 47.619 15.86 2.31 0.00 4.41
2559 3327 2.375173 TCTACACTGTGATGCTGCAG 57.625 50.000 15.86 10.11 38.58 4.41
2571 3342 1.214589 GCTGCAGCAGACAATTGGG 59.785 57.895 33.36 0.00 41.59 4.12
2573 3344 0.524862 CTGCAGCAGACAATTGGGTC 59.475 55.000 18.42 0.00 38.08 4.46
2576 3347 0.606401 CAGCAGACAATTGGGTCCGT 60.606 55.000 10.83 0.00 38.59 4.69
2589 3360 3.443052 TGGGTCCGTCCAACTAAGAATA 58.557 45.455 0.00 0.00 38.11 1.75
2603 3374 8.578151 CCAACTAAGAATATGTCCTACTCCTAC 58.422 40.741 0.00 0.00 0.00 3.18
2609 3380 0.395311 TGTCCTACTCCTACAGGCCG 60.395 60.000 0.00 0.00 34.44 6.13
2636 3407 0.738975 AACGGCGAATCTCGATCTCA 59.261 50.000 16.62 0.00 43.74 3.27
2681 3452 2.195139 GGCATCCTGAGCATGGCT 59.805 61.111 2.25 0.00 42.23 4.75
2750 3524 2.182030 CAGTTCGCCTCCCTCGAC 59.818 66.667 0.00 0.00 35.51 4.20
2751 3525 3.069318 AGTTCGCCTCCCTCGACC 61.069 66.667 0.00 0.00 35.51 4.79
2752 3526 3.069318 GTTCGCCTCCCTCGACCT 61.069 66.667 0.00 0.00 35.51 3.85
2859 3651 1.337823 ACGGGATGTACACAGAGCAAC 60.338 52.381 0.00 0.00 0.00 4.17
3082 3874 0.252467 AGCAGGAGGAGCCAGTACTT 60.252 55.000 0.00 0.00 40.02 2.24
3101 3896 2.797866 TTCTTGACTCGACGAGCGGC 62.798 60.000 24.38 14.29 41.33 6.53
3176 3971 1.300971 TGCATCTGCGCCTTCTTCAC 61.301 55.000 4.18 0.00 45.83 3.18
3263 4058 1.673665 GAGGGCTGTGCTGAAGGTG 60.674 63.158 0.00 0.00 0.00 4.00
3284 4079 2.816958 CTGCCGCTGTACCTGCTG 60.817 66.667 6.43 1.73 0.00 4.41
3320 4115 3.849953 GCCGTCCACGCGATCAAC 61.850 66.667 15.93 4.25 38.18 3.18
3321 4116 2.431771 CCGTCCACGCGATCAACA 60.432 61.111 15.93 0.00 38.18 3.33
3330 4125 4.521075 CGATCAACATCCGCACCT 57.479 55.556 0.00 0.00 0.00 4.00
3331 4126 2.301505 CGATCAACATCCGCACCTC 58.698 57.895 0.00 0.00 0.00 3.85
3332 4127 0.460109 CGATCAACATCCGCACCTCA 60.460 55.000 0.00 0.00 0.00 3.86
3333 4128 1.737838 GATCAACATCCGCACCTCAA 58.262 50.000 0.00 0.00 0.00 3.02
3334 4129 1.667724 GATCAACATCCGCACCTCAAG 59.332 52.381 0.00 0.00 0.00 3.02
3336 4131 1.002134 AACATCCGCACCTCAAGGG 60.002 57.895 0.29 0.00 40.27 3.95
3457 4261 0.687354 GAGTCCTTGTCAGGCTCCAA 59.313 55.000 0.00 0.00 40.58 3.53
3491 4295 1.238625 CGCGGTGGTTTTACATGGGT 61.239 55.000 0.00 0.00 0.00 4.51
3541 4345 0.752658 TATGATGTGGTCAGGAGGCG 59.247 55.000 0.00 0.00 40.92 5.52
3605 4409 3.929948 CGCGGCGATCTCTTTGGC 61.930 66.667 19.16 0.00 0.00 4.52
3713 4520 3.794786 TCCTTGGCAGAGGAAGAGA 57.205 52.632 13.70 0.00 42.75 3.10
3714 4521 2.260639 TCCTTGGCAGAGGAAGAGAT 57.739 50.000 13.70 0.00 42.75 2.75
3715 4522 2.114616 TCCTTGGCAGAGGAAGAGATC 58.885 52.381 13.70 0.00 42.75 2.75
3716 4523 1.836166 CCTTGGCAGAGGAAGAGATCA 59.164 52.381 9.32 0.00 39.25 2.92
3719 4526 1.273495 TGGCAGAGGAAGAGATCAGGT 60.273 52.381 0.00 0.00 0.00 4.00
3720 4527 1.138661 GGCAGAGGAAGAGATCAGGTG 59.861 57.143 0.00 0.00 0.00 4.00
3722 4529 1.761784 CAGAGGAAGAGATCAGGTGGG 59.238 57.143 0.00 0.00 0.00 4.61
3723 4530 1.364328 AGAGGAAGAGATCAGGTGGGT 59.636 52.381 0.00 0.00 0.00 4.51
3724 4531 2.587777 AGAGGAAGAGATCAGGTGGGTA 59.412 50.000 0.00 0.00 0.00 3.69
3749 4556 3.957497 AGATGGTCTCTCGCATCTAACTT 59.043 43.478 0.00 0.00 34.63 2.66
3750 4557 3.510388 TGGTCTCTCGCATCTAACTTG 57.490 47.619 0.00 0.00 0.00 3.16
3758 4565 5.582550 TCTCGCATCTAACTTGAGTATGTG 58.417 41.667 0.00 0.00 0.00 3.21
3761 4568 6.163476 TCGCATCTAACTTGAGTATGTGTTT 58.837 36.000 6.07 0.00 31.62 2.83
3763 4570 6.546395 GCATCTAACTTGAGTATGTGTTTGG 58.454 40.000 0.00 0.00 0.00 3.28
3764 4571 6.546395 CATCTAACTTGAGTATGTGTTTGGC 58.454 40.000 0.00 0.00 0.00 4.52
3766 4573 6.296026 TCTAACTTGAGTATGTGTTTGGCTT 58.704 36.000 0.00 0.00 0.00 4.35
3767 4574 4.836125 ACTTGAGTATGTGTTTGGCTTG 57.164 40.909 0.00 0.00 0.00 4.01
3768 4575 4.207165 ACTTGAGTATGTGTTTGGCTTGT 58.793 39.130 0.00 0.00 0.00 3.16
3770 4577 2.884012 TGAGTATGTGTTTGGCTTGTGG 59.116 45.455 0.00 0.00 0.00 4.17
3771 4578 2.884639 GAGTATGTGTTTGGCTTGTGGT 59.115 45.455 0.00 0.00 0.00 4.16
3772 4579 2.622942 AGTATGTGTTTGGCTTGTGGTG 59.377 45.455 0.00 0.00 0.00 4.17
3773 4580 0.752054 ATGTGTTTGGCTTGTGGTGG 59.248 50.000 0.00 0.00 0.00 4.61
3774 4581 0.323816 TGTGTTTGGCTTGTGGTGGA 60.324 50.000 0.00 0.00 0.00 4.02
3775 4582 1.039856 GTGTTTGGCTTGTGGTGGAT 58.960 50.000 0.00 0.00 0.00 3.41
3776 4583 1.412343 GTGTTTGGCTTGTGGTGGATT 59.588 47.619 0.00 0.00 0.00 3.01
3777 4584 1.411977 TGTTTGGCTTGTGGTGGATTG 59.588 47.619 0.00 0.00 0.00 2.67
3778 4585 1.047002 TTTGGCTTGTGGTGGATTGG 58.953 50.000 0.00 0.00 0.00 3.16
3779 4586 0.831288 TTGGCTTGTGGTGGATTGGG 60.831 55.000 0.00 0.00 0.00 4.12
3780 4587 1.228862 GGCTTGTGGTGGATTGGGT 60.229 57.895 0.00 0.00 0.00 4.51
3781 4588 0.039035 GGCTTGTGGTGGATTGGGTA 59.961 55.000 0.00 0.00 0.00 3.69
3782 4589 1.549037 GGCTTGTGGTGGATTGGGTAA 60.549 52.381 0.00 0.00 0.00 2.85
3783 4590 1.544246 GCTTGTGGTGGATTGGGTAAC 59.456 52.381 0.00 0.00 0.00 2.50
3784 4591 1.810151 CTTGTGGTGGATTGGGTAACG 59.190 52.381 0.00 0.00 37.60 3.18
3785 4592 0.766131 TGTGGTGGATTGGGTAACGT 59.234 50.000 0.00 0.00 37.60 3.99
3786 4593 1.161843 GTGGTGGATTGGGTAACGTG 58.838 55.000 0.00 0.00 37.60 4.49
3787 4594 0.766131 TGGTGGATTGGGTAACGTGT 59.234 50.000 0.00 0.00 37.60 4.49
3788 4595 1.976404 TGGTGGATTGGGTAACGTGTA 59.024 47.619 0.00 0.00 37.60 2.90
3789 4596 2.027929 TGGTGGATTGGGTAACGTGTAG 60.028 50.000 0.00 0.00 37.60 2.74
3790 4597 2.004733 GTGGATTGGGTAACGTGTAGC 58.995 52.381 0.00 0.00 37.60 3.58
3791 4598 1.624312 TGGATTGGGTAACGTGTAGCA 59.376 47.619 0.00 0.00 37.60 3.49
3792 4599 2.237643 TGGATTGGGTAACGTGTAGCAT 59.762 45.455 0.00 0.00 37.60 3.79
3793 4600 2.612212 GGATTGGGTAACGTGTAGCATG 59.388 50.000 0.00 0.00 37.60 4.06
3794 4601 2.843401 TTGGGTAACGTGTAGCATGT 57.157 45.000 0.00 0.00 34.83 3.21
3795 4602 2.087501 TGGGTAACGTGTAGCATGTG 57.912 50.000 0.00 0.00 33.54 3.21
3796 4603 1.338294 TGGGTAACGTGTAGCATGTGG 60.338 52.381 0.00 0.00 33.54 4.17
3797 4604 0.725117 GGTAACGTGTAGCATGTGGC 59.275 55.000 0.00 0.00 45.30 5.01
3806 4613 2.879907 GCATGTGGCATCGTGCTT 59.120 55.556 19.95 0.00 44.28 3.91
3807 4614 1.213537 GCATGTGGCATCGTGCTTT 59.786 52.632 19.95 0.00 44.28 3.51
3808 4615 1.074319 GCATGTGGCATCGTGCTTTG 61.074 55.000 19.95 4.67 44.28 2.77
3809 4616 0.522626 CATGTGGCATCGTGCTTTGA 59.477 50.000 9.31 0.00 44.28 2.69
3810 4617 0.806868 ATGTGGCATCGTGCTTTGAG 59.193 50.000 9.31 0.00 44.28 3.02
3811 4618 1.236616 TGTGGCATCGTGCTTTGAGG 61.237 55.000 9.31 0.00 44.28 3.86
3812 4619 1.675310 TGGCATCGTGCTTTGAGGG 60.675 57.895 9.31 0.00 44.28 4.30
3813 4620 2.409870 GGCATCGTGCTTTGAGGGG 61.410 63.158 9.31 0.00 44.28 4.79
3814 4621 1.377202 GCATCGTGCTTTGAGGGGA 60.377 57.895 3.20 0.00 40.96 4.81
3815 4622 0.960364 GCATCGTGCTTTGAGGGGAA 60.960 55.000 3.20 0.00 40.96 3.97
3816 4623 1.533625 CATCGTGCTTTGAGGGGAAA 58.466 50.000 0.00 0.00 0.00 3.13
3817 4624 2.094675 CATCGTGCTTTGAGGGGAAAT 58.905 47.619 0.00 0.00 0.00 2.17
3818 4625 2.286365 TCGTGCTTTGAGGGGAAATT 57.714 45.000 0.00 0.00 0.00 1.82
3819 4626 2.593026 TCGTGCTTTGAGGGGAAATTT 58.407 42.857 0.00 0.00 0.00 1.82
3820 4627 2.295909 TCGTGCTTTGAGGGGAAATTTG 59.704 45.455 0.00 0.00 0.00 2.32
3821 4628 2.295909 CGTGCTTTGAGGGGAAATTTGA 59.704 45.455 0.00 0.00 0.00 2.69
3822 4629 3.056607 CGTGCTTTGAGGGGAAATTTGAT 60.057 43.478 0.00 0.00 0.00 2.57
3823 4630 4.157656 CGTGCTTTGAGGGGAAATTTGATA 59.842 41.667 0.00 0.00 0.00 2.15
3824 4631 5.163519 CGTGCTTTGAGGGGAAATTTGATAT 60.164 40.000 0.00 0.00 0.00 1.63
3825 4632 6.627953 CGTGCTTTGAGGGGAAATTTGATATT 60.628 38.462 0.00 0.00 0.00 1.28
3826 4633 7.105588 GTGCTTTGAGGGGAAATTTGATATTT 58.894 34.615 0.00 0.00 0.00 1.40
3827 4634 7.607607 GTGCTTTGAGGGGAAATTTGATATTTT 59.392 33.333 0.00 0.00 0.00 1.82
3828 4635 8.162746 TGCTTTGAGGGGAAATTTGATATTTTT 58.837 29.630 0.00 0.00 0.00 1.94
3852 4659 7.807977 TTTTCAGTTTTGCTAGAACTCATCT 57.192 32.000 0.00 0.00 42.48 2.90
3853 4660 8.902540 TTTTCAGTTTTGCTAGAACTCATCTA 57.097 30.769 0.00 0.00 39.71 1.98
3958 4765 5.010112 TCAAAGATGTAAAATTTGGACCGCA 59.990 36.000 0.00 0.00 35.21 5.69
4006 4814 3.777106 AAGCTCAACTCCAACAGATGA 57.223 42.857 0.00 0.00 33.11 2.92
4018 4826 6.666546 ACTCCAACAGATGATCCAAATTGATT 59.333 34.615 0.00 0.00 0.00 2.57
4044 4852 6.823689 GTCCAAAAGAGCAACTCCAATAGATA 59.176 38.462 0.00 0.00 0.00 1.98
4047 4855 7.337942 CCAAAAGAGCAACTCCAATAGATAGTT 59.662 37.037 0.00 0.00 33.82 2.24
4331 5164 4.698625 ACCGGCCTCGTCCTCCTT 62.699 66.667 0.00 0.00 33.95 3.36
4387 5223 3.755628 GCTCGGCCTGGACGTACA 61.756 66.667 23.25 0.00 34.61 2.90
4526 5362 2.434884 CGGCACAAGCATCTCCGT 60.435 61.111 0.00 0.00 44.61 4.69
4564 5400 0.397941 CTCTGGGAAGTTGAGGTGCA 59.602 55.000 0.00 0.00 0.00 4.57
4837 5767 3.385384 CAGAGCTGAGGGGCGACA 61.385 66.667 0.00 0.00 37.29 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.516090 ACAAAATCCACATACGTCAACAAC 58.484 37.500 0.00 0.00 0.00 3.32
10 11 5.759506 ACAAAATCCACATACGTCAACAA 57.240 34.783 0.00 0.00 0.00 2.83
11 12 6.862711 TTACAAAATCCACATACGTCAACA 57.137 33.333 0.00 0.00 0.00 3.33
12 13 7.133513 TGTTTACAAAATCCACATACGTCAAC 58.866 34.615 0.00 0.00 0.00 3.18
13 14 7.260558 TGTTTACAAAATCCACATACGTCAA 57.739 32.000 0.00 0.00 0.00 3.18
14 15 6.862711 TGTTTACAAAATCCACATACGTCA 57.137 33.333 0.00 0.00 0.00 4.35
15 16 8.018520 TGAATGTTTACAAAATCCACATACGTC 58.981 33.333 0.00 0.00 0.00 4.34
16 17 7.877003 TGAATGTTTACAAAATCCACATACGT 58.123 30.769 0.00 0.00 0.00 3.57
17 18 7.484641 CCTGAATGTTTACAAAATCCACATACG 59.515 37.037 0.00 0.00 0.00 3.06
18 19 7.275560 GCCTGAATGTTTACAAAATCCACATAC 59.724 37.037 0.00 0.00 0.00 2.39
19 20 7.178274 AGCCTGAATGTTTACAAAATCCACATA 59.822 33.333 0.00 0.00 0.00 2.29
20 21 6.014327 AGCCTGAATGTTTACAAAATCCACAT 60.014 34.615 0.00 0.00 0.00 3.21
21 22 5.304101 AGCCTGAATGTTTACAAAATCCACA 59.696 36.000 0.00 0.00 0.00 4.17
22 23 5.783111 AGCCTGAATGTTTACAAAATCCAC 58.217 37.500 0.00 0.00 0.00 4.02
23 24 5.774690 AGAGCCTGAATGTTTACAAAATCCA 59.225 36.000 0.00 0.00 0.00 3.41
24 25 6.272822 AGAGCCTGAATGTTTACAAAATCC 57.727 37.500 0.00 0.00 0.00 3.01
25 26 6.024049 CGAGAGCCTGAATGTTTACAAAATC 58.976 40.000 0.00 0.00 0.00 2.17
26 27 5.942872 CGAGAGCCTGAATGTTTACAAAAT 58.057 37.500 0.00 0.00 0.00 1.82
27 28 5.356882 CGAGAGCCTGAATGTTTACAAAA 57.643 39.130 0.00 0.00 0.00 2.44
44 45 2.315011 GCGTTCATGAGATAGCGAGAG 58.685 52.381 0.00 0.00 0.00 3.20
45 46 1.334149 CGCGTTCATGAGATAGCGAGA 60.334 52.381 22.57 0.00 46.10 4.04
46 47 1.048494 CGCGTTCATGAGATAGCGAG 58.952 55.000 22.57 10.84 46.10 5.03
47 48 0.934901 GCGCGTTCATGAGATAGCGA 60.935 55.000 27.63 0.00 46.10 4.93
48 49 0.936764 AGCGCGTTCATGAGATAGCG 60.937 55.000 22.64 22.64 46.02 4.26
49 50 2.051879 TAGCGCGTTCATGAGATAGC 57.948 50.000 8.43 1.39 0.00 2.97
50 51 4.045104 AGTTTAGCGCGTTCATGAGATAG 58.955 43.478 8.43 0.00 0.00 2.08
51 52 4.041740 AGTTTAGCGCGTTCATGAGATA 57.958 40.909 8.43 0.00 0.00 1.98
52 53 2.893637 AGTTTAGCGCGTTCATGAGAT 58.106 42.857 8.43 0.00 0.00 2.75
53 54 2.363788 AGTTTAGCGCGTTCATGAGA 57.636 45.000 8.43 0.00 0.00 3.27
54 55 2.411748 TCAAGTTTAGCGCGTTCATGAG 59.588 45.455 8.43 0.00 0.00 2.90
55 56 2.409012 TCAAGTTTAGCGCGTTCATGA 58.591 42.857 8.43 0.87 0.00 3.07
56 57 2.873170 TCAAGTTTAGCGCGTTCATG 57.127 45.000 8.43 0.00 0.00 3.07
57 58 4.419522 AAATCAAGTTTAGCGCGTTCAT 57.580 36.364 8.43 0.00 0.00 2.57
58 59 3.889196 AAATCAAGTTTAGCGCGTTCA 57.111 38.095 8.43 0.00 0.00 3.18
59 60 3.181553 GCAAAATCAAGTTTAGCGCGTTC 60.182 43.478 8.43 0.00 0.00 3.95
60 61 2.724174 GCAAAATCAAGTTTAGCGCGTT 59.276 40.909 8.43 3.54 0.00 4.84
61 62 2.315901 GCAAAATCAAGTTTAGCGCGT 58.684 42.857 8.43 0.00 0.00 6.01
62 63 1.648681 GGCAAAATCAAGTTTAGCGCG 59.351 47.619 0.00 0.00 0.00 6.86
63 64 2.946564 AGGCAAAATCAAGTTTAGCGC 58.053 42.857 0.00 0.00 0.00 5.92
64 65 6.321717 TCATAAGGCAAAATCAAGTTTAGCG 58.678 36.000 0.00 0.00 0.00 4.26
65 66 9.801873 TTATCATAAGGCAAAATCAAGTTTAGC 57.198 29.630 0.00 0.00 0.00 3.09
70 71 9.412460 TGAGATTATCATAAGGCAAAATCAAGT 57.588 29.630 0.00 0.00 31.12 3.16
86 87 7.394016 AGTACAACAACACCATGAGATTATCA 58.606 34.615 0.00 0.00 43.70 2.15
87 88 7.849804 AGTACAACAACACCATGAGATTATC 57.150 36.000 0.00 0.00 0.00 1.75
168 169 9.871238 ATCTTAACATACTTACTCAAACACGAT 57.129 29.630 0.00 0.00 0.00 3.73
169 170 9.701098 AATCTTAACATACTTACTCAAACACGA 57.299 29.630 0.00 0.00 0.00 4.35
190 191 9.819267 GGTAATGCTCAAGTTAGTAGTAATCTT 57.181 33.333 0.00 0.00 0.00 2.40
191 192 9.203163 AGGTAATGCTCAAGTTAGTAGTAATCT 57.797 33.333 0.00 0.00 0.00 2.40
194 195 9.246670 TGTAGGTAATGCTCAAGTTAGTAGTAA 57.753 33.333 0.00 0.00 0.00 2.24
195 196 8.812513 TGTAGGTAATGCTCAAGTTAGTAGTA 57.187 34.615 0.00 0.00 0.00 1.82
196 197 7.713734 TGTAGGTAATGCTCAAGTTAGTAGT 57.286 36.000 0.00 0.00 0.00 2.73
197 198 8.414003 TCATGTAGGTAATGCTCAAGTTAGTAG 58.586 37.037 0.00 0.00 0.00 2.57
198 199 8.195436 GTCATGTAGGTAATGCTCAAGTTAGTA 58.805 37.037 0.00 0.00 0.00 1.82
199 200 7.042335 GTCATGTAGGTAATGCTCAAGTTAGT 58.958 38.462 0.00 0.00 0.00 2.24
200 201 6.480320 GGTCATGTAGGTAATGCTCAAGTTAG 59.520 42.308 0.00 0.00 0.00 2.34
201 202 6.070481 TGGTCATGTAGGTAATGCTCAAGTTA 60.070 38.462 0.00 0.00 0.00 2.24
202 203 5.186198 GGTCATGTAGGTAATGCTCAAGTT 58.814 41.667 0.00 0.00 0.00 2.66
203 204 4.225042 TGGTCATGTAGGTAATGCTCAAGT 59.775 41.667 0.00 0.00 0.00 3.16
204 205 4.572389 GTGGTCATGTAGGTAATGCTCAAG 59.428 45.833 0.00 0.00 0.00 3.02
205 206 4.019771 TGTGGTCATGTAGGTAATGCTCAA 60.020 41.667 0.00 0.00 0.00 3.02
206 207 3.517500 TGTGGTCATGTAGGTAATGCTCA 59.482 43.478 0.00 0.00 0.00 4.26
207 208 4.137116 TGTGGTCATGTAGGTAATGCTC 57.863 45.455 0.00 0.00 0.00 4.26
208 209 4.261801 GTTGTGGTCATGTAGGTAATGCT 58.738 43.478 0.00 0.00 0.00 3.79
209 210 4.006989 TGTTGTGGTCATGTAGGTAATGC 58.993 43.478 0.00 0.00 0.00 3.56
210 211 6.483307 CCTATGTTGTGGTCATGTAGGTAATG 59.517 42.308 0.00 0.00 0.00 1.90
211 212 6.409234 CCCTATGTTGTGGTCATGTAGGTAAT 60.409 42.308 0.00 0.00 0.00 1.89
212 213 5.104693 CCCTATGTTGTGGTCATGTAGGTAA 60.105 44.000 0.00 0.00 0.00 2.85
213 214 4.407621 CCCTATGTTGTGGTCATGTAGGTA 59.592 45.833 0.00 0.00 0.00 3.08
214 215 3.199946 CCCTATGTTGTGGTCATGTAGGT 59.800 47.826 0.00 0.00 0.00 3.08
215 216 3.454447 TCCCTATGTTGTGGTCATGTAGG 59.546 47.826 0.00 0.00 0.00 3.18
216 217 4.442706 GTCCCTATGTTGTGGTCATGTAG 58.557 47.826 0.00 0.00 0.00 2.74
217 218 3.199071 GGTCCCTATGTTGTGGTCATGTA 59.801 47.826 0.00 0.00 0.00 2.29
218 219 2.026262 GGTCCCTATGTTGTGGTCATGT 60.026 50.000 0.00 0.00 0.00 3.21
219 220 2.643551 GGTCCCTATGTTGTGGTCATG 58.356 52.381 0.00 0.00 0.00 3.07
220 221 1.209504 CGGTCCCTATGTTGTGGTCAT 59.790 52.381 0.00 0.00 0.00 3.06
221 222 0.611200 CGGTCCCTATGTTGTGGTCA 59.389 55.000 0.00 0.00 0.00 4.02
222 223 0.107848 CCGGTCCCTATGTTGTGGTC 60.108 60.000 0.00 0.00 0.00 4.02
223 224 1.988015 CCGGTCCCTATGTTGTGGT 59.012 57.895 0.00 0.00 0.00 4.16
224 225 1.451387 GCCGGTCCCTATGTTGTGG 60.451 63.158 1.90 0.00 0.00 4.17
225 226 1.024579 GTGCCGGTCCCTATGTTGTG 61.025 60.000 1.90 0.00 0.00 3.33
226 227 1.298667 GTGCCGGTCCCTATGTTGT 59.701 57.895 1.90 0.00 0.00 3.32
227 228 1.451387 GGTGCCGGTCCCTATGTTG 60.451 63.158 1.90 0.00 0.00 3.33
228 229 2.676265 GGGTGCCGGTCCCTATGTT 61.676 63.158 23.48 0.00 41.58 2.71
229 230 3.087906 GGGTGCCGGTCCCTATGT 61.088 66.667 23.48 0.00 41.58 2.29
242 243 2.106074 TAATGCAAGCGCGAGGGTG 61.106 57.895 12.10 1.82 42.97 4.61
243 244 2.106683 GTAATGCAAGCGCGAGGGT 61.107 57.895 12.10 0.00 42.97 4.34
244 245 2.709475 GTAATGCAAGCGCGAGGG 59.291 61.111 12.10 0.00 42.97 4.30
245 246 0.529773 TAGGTAATGCAAGCGCGAGG 60.530 55.000 12.10 0.00 42.97 4.63
246 247 0.577269 GTAGGTAATGCAAGCGCGAG 59.423 55.000 12.10 0.00 42.97 5.03
247 248 0.108567 TGTAGGTAATGCAAGCGCGA 60.109 50.000 12.10 0.00 42.97 5.87
248 249 0.937304 ATGTAGGTAATGCAAGCGCG 59.063 50.000 0.00 0.00 42.97 6.86
249 250 1.939934 TCATGTAGGTAATGCAAGCGC 59.060 47.619 0.00 0.00 39.24 5.92
250 251 2.287915 GGTCATGTAGGTAATGCAAGCG 59.712 50.000 0.00 0.00 0.00 4.68
251 252 3.278574 TGGTCATGTAGGTAATGCAAGC 58.721 45.455 0.00 0.00 0.00 4.01
252 253 6.542005 TGTTATGGTCATGTAGGTAATGCAAG 59.458 38.462 0.00 0.00 0.00 4.01
253 254 6.418946 TGTTATGGTCATGTAGGTAATGCAA 58.581 36.000 0.00 0.00 0.00 4.08
254 255 5.995446 TGTTATGGTCATGTAGGTAATGCA 58.005 37.500 0.00 0.00 0.00 3.96
255 256 7.334421 CCTATGTTATGGTCATGTAGGTAATGC 59.666 40.741 0.00 0.00 0.00 3.56
256 257 7.824289 CCCTATGTTATGGTCATGTAGGTAATG 59.176 40.741 0.00 0.00 0.00 1.90
257 258 7.737607 TCCCTATGTTATGGTCATGTAGGTAAT 59.262 37.037 0.00 0.00 0.00 1.89
258 259 7.015877 GTCCCTATGTTATGGTCATGTAGGTAA 59.984 40.741 0.00 0.00 0.00 2.85
259 260 6.495872 GTCCCTATGTTATGGTCATGTAGGTA 59.504 42.308 0.00 0.00 0.00 3.08
260 261 5.307196 GTCCCTATGTTATGGTCATGTAGGT 59.693 44.000 0.00 0.00 0.00 3.08
261 262 5.280011 GGTCCCTATGTTATGGTCATGTAGG 60.280 48.000 0.00 0.00 0.00 3.18
262 263 5.566826 CGGTCCCTATGTTATGGTCATGTAG 60.567 48.000 0.00 0.00 0.00 2.74
263 264 4.282449 CGGTCCCTATGTTATGGTCATGTA 59.718 45.833 0.00 0.00 0.00 2.29
264 265 3.071023 CGGTCCCTATGTTATGGTCATGT 59.929 47.826 0.00 0.00 0.00 3.21
265 266 3.557054 CCGGTCCCTATGTTATGGTCATG 60.557 52.174 0.00 0.00 0.00 3.07
266 267 2.637872 CCGGTCCCTATGTTATGGTCAT 59.362 50.000 0.00 0.00 0.00 3.06
267 268 2.043992 CCGGTCCCTATGTTATGGTCA 58.956 52.381 0.00 0.00 0.00 4.02
268 269 1.270678 GCCGGTCCCTATGTTATGGTC 60.271 57.143 1.90 0.00 0.00 4.02
269 270 0.763035 GCCGGTCCCTATGTTATGGT 59.237 55.000 1.90 0.00 0.00 3.55
270 271 0.762418 TGCCGGTCCCTATGTTATGG 59.238 55.000 1.90 0.00 0.00 2.74
271 272 1.542547 GGTGCCGGTCCCTATGTTATG 60.543 57.143 1.90 0.00 0.00 1.90
272 273 0.763035 GGTGCCGGTCCCTATGTTAT 59.237 55.000 1.90 0.00 0.00 1.89
273 274 1.339644 GGGTGCCGGTCCCTATGTTA 61.340 60.000 23.48 0.00 41.58 2.41
274 275 2.676265 GGGTGCCGGTCCCTATGTT 61.676 63.158 23.48 0.00 41.58 2.71
275 276 3.087906 GGGTGCCGGTCCCTATGT 61.088 66.667 23.48 0.00 41.58 2.29
307 308 8.813643 ATGTTAATGCTTACTAGATCGGTAAC 57.186 34.615 0.00 7.94 0.00 2.50
310 311 8.803235 TGATATGTTAATGCTTACTAGATCGGT 58.197 33.333 0.00 0.57 0.00 4.69
311 312 9.639601 TTGATATGTTAATGCTTACTAGATCGG 57.360 33.333 0.00 0.00 0.00 4.18
317 318 9.830975 TGAAGCTTGATATGTTAATGCTTACTA 57.169 29.630 2.10 0.00 39.04 1.82
318 319 8.737168 TGAAGCTTGATATGTTAATGCTTACT 57.263 30.769 2.10 0.00 39.04 2.24
319 320 9.787532 TTTGAAGCTTGATATGTTAATGCTTAC 57.212 29.630 2.10 0.00 39.04 2.34
320 321 9.787532 GTTTGAAGCTTGATATGTTAATGCTTA 57.212 29.630 2.10 0.00 39.04 3.09
321 322 8.526147 AGTTTGAAGCTTGATATGTTAATGCTT 58.474 29.630 2.10 0.00 41.18 3.91
322 323 8.059798 AGTTTGAAGCTTGATATGTTAATGCT 57.940 30.769 2.10 0.00 0.00 3.79
323 324 8.693542 AAGTTTGAAGCTTGATATGTTAATGC 57.306 30.769 2.10 0.00 0.00 3.56
326 327 9.231297 AGCTAAGTTTGAAGCTTGATATGTTAA 57.769 29.630 2.10 0.00 46.82 2.01
371 372 0.034756 ACTGTACCGCATTCTGCACA 59.965 50.000 0.00 0.00 45.36 4.57
382 383 3.389925 TCACTTTTACCCACTGTACCG 57.610 47.619 0.00 0.00 0.00 4.02
383 384 4.453751 TGTTCACTTTTACCCACTGTACC 58.546 43.478 0.00 0.00 0.00 3.34
385 386 4.131596 GCTGTTCACTTTTACCCACTGTA 58.868 43.478 0.00 0.00 0.00 2.74
387 388 2.293399 GGCTGTTCACTTTTACCCACTG 59.707 50.000 0.00 0.00 0.00 3.66
393 394 3.308530 GTGCATGGCTGTTCACTTTTAC 58.691 45.455 0.00 0.00 0.00 2.01
394 395 2.295909 GGTGCATGGCTGTTCACTTTTA 59.704 45.455 0.00 0.00 0.00 1.52
401 402 0.889994 TGATTGGTGCATGGCTGTTC 59.110 50.000 0.00 0.00 0.00 3.18
403 404 1.252904 GGTGATTGGTGCATGGCTGT 61.253 55.000 0.00 0.00 0.00 4.40
440 441 1.031571 TTGCCCGATGATGAGCAACC 61.032 55.000 0.00 0.00 40.13 3.77
444 445 1.098050 AAACTTGCCCGATGATGAGC 58.902 50.000 0.00 0.00 0.00 4.26
445 446 2.838386 CAAACTTGCCCGATGATGAG 57.162 50.000 0.00 0.00 0.00 2.90
480 481 0.436531 CTGTTGAAGACGAAGCTCGC 59.563 55.000 5.63 0.00 45.12 5.03
499 500 6.449698 TGATTTTGCTGGTTTTCTTCATCTC 58.550 36.000 0.00 0.00 0.00 2.75
503 504 6.159299 TCATGATTTTGCTGGTTTTCTTCA 57.841 33.333 0.00 0.00 0.00 3.02
506 507 5.796424 ACTCATGATTTTGCTGGTTTTCT 57.204 34.783 0.00 0.00 0.00 2.52
513 514 6.183360 TGCAATACCTACTCATGATTTTGCTG 60.183 38.462 16.87 0.10 38.15 4.41
515 516 6.038603 TCTGCAATACCTACTCATGATTTTGC 59.961 38.462 11.96 11.96 37.90 3.68
525 526 3.131223 TGCTGTCTCTGCAATACCTACTC 59.869 47.826 0.00 0.00 35.52 2.59
526 527 3.099905 TGCTGTCTCTGCAATACCTACT 58.900 45.455 0.00 0.00 35.52 2.57
531 532 2.095532 CAGCTTGCTGTCTCTGCAATAC 59.904 50.000 13.89 9.27 44.59 1.89
532 533 2.027837 TCAGCTTGCTGTCTCTGCAATA 60.028 45.455 20.20 0.00 44.59 1.90
538 539 4.615949 CGTATTATCAGCTTGCTGTCTCT 58.384 43.478 20.20 8.53 0.00 3.10
539 540 3.183373 GCGTATTATCAGCTTGCTGTCTC 59.817 47.826 20.20 7.41 0.00 3.36
540 541 3.126831 GCGTATTATCAGCTTGCTGTCT 58.873 45.455 20.20 12.41 0.00 3.41
541 542 2.221981 GGCGTATTATCAGCTTGCTGTC 59.778 50.000 20.20 6.57 0.00 3.51
544 545 1.873903 CGGGCGTATTATCAGCTTGCT 60.874 52.381 0.00 0.00 0.00 3.91
545 546 0.512952 CGGGCGTATTATCAGCTTGC 59.487 55.000 0.00 0.00 0.00 4.01
546 547 0.512952 GCGGGCGTATTATCAGCTTG 59.487 55.000 0.00 0.00 0.00 4.01
548 549 1.004918 GGCGGGCGTATTATCAGCT 60.005 57.895 0.00 0.00 0.00 4.24
550 551 1.006571 ACGGCGGGCGTATTATCAG 60.007 57.895 28.62 0.00 0.00 2.90
551 552 1.007038 GACGGCGGGCGTATTATCA 60.007 57.895 29.67 0.00 0.00 2.15
552 553 2.084681 CGACGGCGGGCGTATTATC 61.085 63.158 29.67 15.46 0.00 1.75
553 554 2.049802 CGACGGCGGGCGTATTAT 60.050 61.111 29.67 6.66 0.00 1.28
563 564 2.106131 TGATTCCATCCGACGGCG 59.894 61.111 9.66 1.94 37.24 6.46
565 683 0.107897 TTGGTGATTCCATCCGACGG 60.108 55.000 7.84 7.84 46.60 4.79
574 692 2.017049 CCGTCCATCTTTGGTGATTCC 58.983 52.381 0.00 0.00 44.06 3.01
577 695 1.405526 CGTCCGTCCATCTTTGGTGAT 60.406 52.381 0.00 0.00 44.06 3.06
579 697 1.019278 CCGTCCGTCCATCTTTGGTG 61.019 60.000 0.00 0.00 44.06 4.17
580 698 1.189524 TCCGTCCGTCCATCTTTGGT 61.190 55.000 0.00 0.00 44.06 3.67
586 704 3.136123 TCCGTCCGTCCGTCCATC 61.136 66.667 0.00 0.00 0.00 3.51
595 713 3.677648 CCAAGACCGTCCGTCCGT 61.678 66.667 0.00 0.00 43.08 4.69
596 714 4.430765 CCCAAGACCGTCCGTCCG 62.431 72.222 0.00 0.00 43.08 4.79
597 715 3.292500 GACCCAAGACCGTCCGTCC 62.293 68.421 0.00 0.00 43.08 4.79
598 716 2.260743 GACCCAAGACCGTCCGTC 59.739 66.667 0.00 0.00 42.32 4.79
600 718 2.048503 GTGACCCAAGACCGTCCG 60.049 66.667 0.00 0.00 0.00 4.79
601 719 2.346365 GGTGACCCAAGACCGTCC 59.654 66.667 0.00 0.00 0.00 4.79
603 721 2.516888 CCTGGTGACCCAAGACCGT 61.517 63.158 0.00 0.00 41.27 4.83
604 722 2.172483 CTCCTGGTGACCCAAGACCG 62.172 65.000 0.00 0.00 41.27 4.79
606 724 0.321996 GTCTCCTGGTGACCCAAGAC 59.678 60.000 16.19 10.91 39.95 3.01
607 725 1.185618 CGTCTCCTGGTGACCCAAGA 61.186 60.000 19.96 0.00 41.27 3.02
608 726 1.293498 CGTCTCCTGGTGACCCAAG 59.707 63.158 19.96 5.47 41.27 3.61
609 727 2.214216 CCGTCTCCTGGTGACCCAA 61.214 63.158 19.96 0.00 41.27 4.12
612 730 4.083862 GCCCGTCTCCTGGTGACC 62.084 72.222 19.96 0.00 0.00 4.02
613 731 2.997897 AGCCCGTCTCCTGGTGAC 60.998 66.667 16.89 16.89 0.00 3.67
614 732 2.680352 GAGCCCGTCTCCTGGTGA 60.680 66.667 0.00 0.00 35.77 4.02
629 747 1.915078 AATGGACTTGGGAGGCGGAG 61.915 60.000 0.00 0.00 0.00 4.63
630 748 1.497309 AAATGGACTTGGGAGGCGGA 61.497 55.000 0.00 0.00 0.00 5.54
636 1087 2.238521 GAGCAACAAATGGACTTGGGA 58.761 47.619 0.00 0.00 0.00 4.37
637 1088 1.273327 GGAGCAACAAATGGACTTGGG 59.727 52.381 0.00 0.00 0.00 4.12
641 1092 1.523758 GTCGGAGCAACAAATGGACT 58.476 50.000 0.00 0.00 0.00 3.85
643 1094 0.034198 TCGTCGGAGCAACAAATGGA 59.966 50.000 0.00 0.00 0.00 3.41
645 1096 0.865111 TGTCGTCGGAGCAACAAATG 59.135 50.000 0.00 0.00 0.00 2.32
754 1214 6.816640 GTCCAGACATAGTAGTGCATTTTGTA 59.183 38.462 0.00 0.00 0.00 2.41
760 1220 3.024547 ACGTCCAGACATAGTAGTGCAT 58.975 45.455 0.00 0.00 0.00 3.96
761 1221 2.163613 CACGTCCAGACATAGTAGTGCA 59.836 50.000 0.00 0.00 0.00 4.57
762 1222 2.479730 CCACGTCCAGACATAGTAGTGC 60.480 54.545 0.00 0.00 0.00 4.40
763 1223 2.099263 CCCACGTCCAGACATAGTAGTG 59.901 54.545 0.00 0.00 0.00 2.74
764 1224 2.025605 TCCCACGTCCAGACATAGTAGT 60.026 50.000 0.00 0.00 0.00 2.73
765 1225 2.619177 CTCCCACGTCCAGACATAGTAG 59.381 54.545 0.00 0.00 0.00 2.57
776 1236 2.346365 GTCCCAACTCCCACGTCC 59.654 66.667 0.00 0.00 0.00 4.79
809 1269 1.339055 CCGAACATGTGGACTGATGGT 60.339 52.381 0.00 0.00 0.00 3.55
834 1347 1.202722 GGTCAACCCTTTCCGTCTTCA 60.203 52.381 0.00 0.00 0.00 3.02
844 1357 1.371558 GTGCTCGAGGTCAACCCTT 59.628 57.895 15.58 0.00 46.51 3.95
855 1368 1.248101 TGATGAGTTCCCGTGCTCGA 61.248 55.000 10.21 0.00 39.71 4.04
857 1370 0.460987 CCTGATGAGTTCCCGTGCTC 60.461 60.000 0.00 0.00 0.00 4.26
862 1375 2.484417 CCTGAATCCTGATGAGTTCCCG 60.484 54.545 0.00 0.00 0.00 5.14
872 1385 3.198635 GTGTCCTGAATCCTGAATCCTGA 59.801 47.826 0.00 0.00 0.00 3.86
873 1386 3.539604 GTGTCCTGAATCCTGAATCCTG 58.460 50.000 0.00 0.00 0.00 3.86
874 1387 2.169352 CGTGTCCTGAATCCTGAATCCT 59.831 50.000 0.00 0.00 0.00 3.24
875 1388 2.168521 TCGTGTCCTGAATCCTGAATCC 59.831 50.000 0.00 0.00 0.00 3.01
876 1389 3.526931 TCGTGTCCTGAATCCTGAATC 57.473 47.619 0.00 0.00 0.00 2.52
877 1390 3.452264 TGATCGTGTCCTGAATCCTGAAT 59.548 43.478 0.00 0.00 0.00 2.57
878 1391 2.831526 TGATCGTGTCCTGAATCCTGAA 59.168 45.455 0.00 0.00 0.00 3.02
903 1416 3.069729 TCTGATGGCTGTCTGATGATCTG 59.930 47.826 0.00 0.00 0.00 2.90
912 1430 2.435069 CTGAATCCTCTGATGGCTGTCT 59.565 50.000 0.00 0.00 0.00 3.41
917 1435 2.612471 CCGATCTGAATCCTCTGATGGC 60.612 54.545 0.00 0.00 39.57 4.40
924 1442 4.392921 TGACTTTCCGATCTGAATCCTC 57.607 45.455 0.00 0.00 0.00 3.71
970 1488 0.976641 TTACTAGTGGCTGCTGCTGT 59.023 50.000 15.64 9.09 39.59 4.40
979 1497 3.006537 TCACTCCAGTGTTTACTAGTGGC 59.993 47.826 5.39 0.00 45.76 5.01
988 1506 5.163893 CGCGTTTATATTCACTCCAGTGTTT 60.164 40.000 6.61 0.00 45.76 2.83
1005 1523 3.243301 GGAGGTCACTCATATCGCGTTTA 60.243 47.826 5.77 0.00 45.81 2.01
1006 1524 2.481449 GGAGGTCACTCATATCGCGTTT 60.481 50.000 5.77 0.00 45.81 3.60
1007 1525 1.067212 GGAGGTCACTCATATCGCGTT 59.933 52.381 5.77 0.00 45.81 4.84
1008 1526 0.669077 GGAGGTCACTCATATCGCGT 59.331 55.000 5.77 0.00 45.81 6.01
1009 1527 0.955178 AGGAGGTCACTCATATCGCG 59.045 55.000 0.00 0.00 45.81 5.87
1010 1528 2.288518 GGAAGGAGGTCACTCATATCGC 60.289 54.545 0.00 0.00 45.81 4.58
1011 1529 3.226777 AGGAAGGAGGTCACTCATATCG 58.773 50.000 0.00 0.00 45.81 2.92
1012 1530 3.576550 GGAGGAAGGAGGTCACTCATATC 59.423 52.174 0.00 0.00 45.81 1.63
1013 1531 3.582164 GGAGGAAGGAGGTCACTCATAT 58.418 50.000 0.00 0.00 45.81 1.78
1014 1532 2.359355 GGGAGGAAGGAGGTCACTCATA 60.359 54.545 0.00 0.00 45.81 2.15
1015 1533 1.623834 GGGAGGAAGGAGGTCACTCAT 60.624 57.143 0.00 0.00 45.81 2.90
1016 1534 0.252284 GGGAGGAAGGAGGTCACTCA 60.252 60.000 0.00 0.00 45.81 3.41
1017 1535 0.978667 GGGGAGGAAGGAGGTCACTC 60.979 65.000 0.00 0.00 43.20 3.51
1018 1536 1.081277 GGGGAGGAAGGAGGTCACT 59.919 63.158 0.00 0.00 0.00 3.41
1019 1537 2.359967 CGGGGAGGAAGGAGGTCAC 61.360 68.421 0.00 0.00 0.00 3.67
1048 1566 0.174845 CGCCATCTTTGGTAGACGGA 59.825 55.000 0.00 0.00 45.57 4.69
1049 1567 1.429148 GCGCCATCTTTGGTAGACGG 61.429 60.000 0.00 0.00 45.57 4.79
1070 1604 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1078 1612 2.154462 GATTCTTCAGTGGTGGTGGTG 58.846 52.381 0.00 0.00 0.00 4.17
1079 1613 1.073923 GGATTCTTCAGTGGTGGTGGT 59.926 52.381 0.00 0.00 0.00 4.16
1080 1614 1.352352 AGGATTCTTCAGTGGTGGTGG 59.648 52.381 0.00 0.00 0.00 4.61
1081 1615 2.867109 AGGATTCTTCAGTGGTGGTG 57.133 50.000 0.00 0.00 0.00 4.17
1082 1616 2.237392 GCTAGGATTCTTCAGTGGTGGT 59.763 50.000 0.00 0.00 0.00 4.16
1083 1617 2.420687 GGCTAGGATTCTTCAGTGGTGG 60.421 54.545 0.00 0.00 0.00 4.61
1084 1618 2.503356 AGGCTAGGATTCTTCAGTGGTG 59.497 50.000 0.00 0.00 0.00 4.17
1085 1619 2.503356 CAGGCTAGGATTCTTCAGTGGT 59.497 50.000 0.00 0.00 0.00 4.16
1086 1620 2.503356 ACAGGCTAGGATTCTTCAGTGG 59.497 50.000 0.00 0.00 0.00 4.00
1087 1621 3.431486 GGACAGGCTAGGATTCTTCAGTG 60.431 52.174 0.00 0.00 0.00 3.66
1088 1622 2.769095 GGACAGGCTAGGATTCTTCAGT 59.231 50.000 0.00 0.00 0.00 3.41
1089 1623 2.768527 TGGACAGGCTAGGATTCTTCAG 59.231 50.000 0.00 0.00 0.00 3.02
1090 1624 2.501723 GTGGACAGGCTAGGATTCTTCA 59.498 50.000 0.00 0.00 0.00 3.02
1091 1625 2.769095 AGTGGACAGGCTAGGATTCTTC 59.231 50.000 0.00 0.00 0.00 2.87
1092 1626 2.769095 GAGTGGACAGGCTAGGATTCTT 59.231 50.000 0.00 0.00 0.00 2.52
1093 1627 2.393646 GAGTGGACAGGCTAGGATTCT 58.606 52.381 0.00 0.00 0.00 2.40
1094 1628 1.067821 CGAGTGGACAGGCTAGGATTC 59.932 57.143 0.00 0.00 0.00 2.52
1095 1629 1.115467 CGAGTGGACAGGCTAGGATT 58.885 55.000 0.00 0.00 0.00 3.01
1096 1630 1.395826 GCGAGTGGACAGGCTAGGAT 61.396 60.000 0.00 0.00 0.00 3.24
1097 1631 2.052690 GCGAGTGGACAGGCTAGGA 61.053 63.158 0.00 0.00 0.00 2.94
1101 1635 4.008933 GTGGCGAGTGGACAGGCT 62.009 66.667 0.00 0.00 30.85 4.58
1105 1639 1.888436 GATGAGGTGGCGAGTGGACA 61.888 60.000 0.00 0.00 0.00 4.02
1107 1641 0.904865 AAGATGAGGTGGCGAGTGGA 60.905 55.000 0.00 0.00 0.00 4.02
1137 1671 2.358737 GAAGGTGGCGGTGGACAG 60.359 66.667 0.00 0.00 0.00 3.51
1138 1672 2.847234 AGAAGGTGGCGGTGGACA 60.847 61.111 0.00 0.00 0.00 4.02
1343 1970 0.039180 GGTCGGGGAACAGGGAAAAT 59.961 55.000 0.00 0.00 0.00 1.82
1476 2106 2.163815 CGAAAGAGATATACGCGGGGAT 59.836 50.000 12.47 1.55 0.00 3.85
1650 2280 1.291132 GAGCCATCTAAACTGCCGTC 58.709 55.000 0.00 0.00 0.00 4.79
1845 2493 2.747460 GCCGTGCTGATCCTGCAA 60.747 61.111 11.31 0.00 39.78 4.08
1899 2550 2.434884 CGGCGTGCACTTCATCCT 60.435 61.111 16.19 0.00 0.00 3.24
1966 2626 3.268103 AATTCAAGCCGACGCCCCT 62.268 57.895 0.00 0.00 34.57 4.79
2080 2782 2.954753 GCCAGAGTTGACGGCGTTG 61.955 63.158 16.19 7.13 35.79 4.10
2081 2783 2.665185 GCCAGAGTTGACGGCGTT 60.665 61.111 16.19 0.00 35.79 4.84
2209 2923 1.079819 CTGAAGGCCGACATCACGT 60.080 57.895 0.00 0.00 0.00 4.49
2291 3038 3.018856 CAGATAATGCTTCTTGGCCACA 58.981 45.455 3.88 0.00 0.00 4.17
2407 3160 2.064581 TAAGCTTCTCCCCGCCTCC 61.065 63.158 0.00 0.00 0.00 4.30
2417 3185 2.577593 GCGACCGGGTAAGCTTCT 59.422 61.111 16.87 0.00 0.00 2.85
2420 3188 2.718073 AATCGCGACCGGGTAAGCT 61.718 57.895 12.93 4.77 34.56 3.74
2450 3218 2.289819 GGACAACCCATCCTCGTTTACA 60.290 50.000 0.00 0.00 33.03 2.41
2500 3268 4.293648 CGTGCTCCGTGTCACCCA 62.294 66.667 0.00 0.00 0.00 4.51
2522 3290 5.008217 GTGTAGATCGTAGCTGATTCTCAGT 59.992 44.000 0.00 0.00 45.94 3.41
2541 3309 0.725686 GCTGCAGCATCACAGTGTAG 59.274 55.000 33.36 0.00 41.59 2.74
2556 3324 1.885871 GGACCCAATTGTCTGCTGC 59.114 57.895 4.43 0.00 35.54 5.25
2559 3327 1.305930 GGACGGACCCAATTGTCTGC 61.306 60.000 4.43 0.00 43.97 4.26
2561 3329 0.768622 TTGGACGGACCCAATTGTCT 59.231 50.000 4.43 0.00 40.99 3.41
2571 3342 5.048507 GGACATATTCTTAGTTGGACGGAC 58.951 45.833 0.00 0.00 0.00 4.79
2573 3344 5.277857 AGGACATATTCTTAGTTGGACGG 57.722 43.478 0.00 0.00 0.00 4.79
2576 3347 7.363031 AGGAGTAGGACATATTCTTAGTTGGA 58.637 38.462 0.00 0.00 0.00 3.53
2582 3353 6.720288 GCCTGTAGGAGTAGGACATATTCTTA 59.280 42.308 1.17 0.00 36.11 2.10
2589 3360 1.754555 CGGCCTGTAGGAGTAGGACAT 60.755 57.143 0.00 0.00 42.53 3.06
2603 3374 2.125512 CGTTCTTCCTCCGGCCTG 60.126 66.667 0.00 0.00 0.00 4.85
2609 3380 0.175989 AGATTCGCCGTTCTTCCTCC 59.824 55.000 0.00 0.00 0.00 4.30
2636 3407 1.765314 GGATCATACACACCCTCTGCT 59.235 52.381 0.00 0.00 0.00 4.24
2859 3651 2.119147 CTCGATACCGCCTCCGACAG 62.119 65.000 0.00 0.00 36.29 3.51
2864 3656 1.587054 CATCCTCGATACCGCCTCC 59.413 63.158 0.00 0.00 35.37 4.30
2928 3720 4.845580 CTGCAGGGCGGCGAAGAT 62.846 66.667 12.98 0.00 36.28 2.40
3082 3874 1.209383 CCGCTCGTCGAGTCAAGAA 59.791 57.895 22.61 0.00 41.67 2.52
3101 3896 0.530211 CCTGATTCAGCTCGAGCCAG 60.530 60.000 32.94 28.28 43.38 4.85
3284 4079 4.554036 GCGGCCATGACTCCTCCC 62.554 72.222 2.24 0.00 0.00 4.30
3320 4115 1.153289 CTCCCTTGAGGTGCGGATG 60.153 63.158 0.00 0.00 34.80 3.51
3321 4116 3.313874 CTCCCTTGAGGTGCGGAT 58.686 61.111 0.00 0.00 34.80 4.18
3330 4125 2.669133 CGATGTGGCCCTCCCTTGA 61.669 63.158 0.00 0.00 0.00 3.02
3331 4126 2.124570 CGATGTGGCCCTCCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
3332 4127 3.411517 CCGATGTGGCCCTCCCTT 61.412 66.667 0.00 0.00 0.00 3.95
3333 4128 4.741239 ACCGATGTGGCCCTCCCT 62.741 66.667 0.00 0.00 43.94 4.20
3334 4129 4.489771 CACCGATGTGGCCCTCCC 62.490 72.222 0.00 0.00 43.94 4.30
3343 4138 3.461773 CCGCCTCTCCACCGATGT 61.462 66.667 0.00 0.00 0.00 3.06
3475 4279 0.606096 GCCACCCATGTAAAACCACC 59.394 55.000 0.00 0.00 0.00 4.61
3596 4400 2.733218 CACGCGACGCCAAAGAGA 60.733 61.111 15.93 0.00 0.00 3.10
3605 4409 2.822418 TAACCACATCCCACGCGACG 62.822 60.000 15.93 2.53 0.00 5.12
3653 4457 1.532868 CGTTGCTGGAAGAACAAGAGG 59.467 52.381 0.00 0.00 34.07 3.69
3709 4516 3.981516 TCTCATACCCACCTGATCTCT 57.018 47.619 0.00 0.00 0.00 3.10
3710 4517 3.260380 CCATCTCATACCCACCTGATCTC 59.740 52.174 0.00 0.00 0.00 2.75
3711 4518 3.246301 CCATCTCATACCCACCTGATCT 58.754 50.000 0.00 0.00 0.00 2.75
3712 4519 2.975489 ACCATCTCATACCCACCTGATC 59.025 50.000 0.00 0.00 0.00 2.92
3713 4520 2.975489 GACCATCTCATACCCACCTGAT 59.025 50.000 0.00 0.00 0.00 2.90
3714 4521 2.023015 AGACCATCTCATACCCACCTGA 60.023 50.000 0.00 0.00 0.00 3.86
3715 4522 2.366916 GAGACCATCTCATACCCACCTG 59.633 54.545 0.87 0.00 42.90 4.00
3716 4523 2.248686 AGAGACCATCTCATACCCACCT 59.751 50.000 8.48 0.00 45.73 4.00
3739 4546 6.546395 CCAAACACATACTCAAGTTAGATGC 58.454 40.000 0.00 0.00 0.00 3.91
3749 4556 2.884012 CCACAAGCCAAACACATACTCA 59.116 45.455 0.00 0.00 0.00 3.41
3750 4557 2.884639 ACCACAAGCCAAACACATACTC 59.115 45.455 0.00 0.00 0.00 2.59
3758 4565 1.270252 CCAATCCACCACAAGCCAAAC 60.270 52.381 0.00 0.00 0.00 2.93
3761 4568 1.228831 CCCAATCCACCACAAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
3763 4570 1.544246 GTTACCCAATCCACCACAAGC 59.456 52.381 0.00 0.00 0.00 4.01
3764 4571 1.810151 CGTTACCCAATCCACCACAAG 59.190 52.381 0.00 0.00 0.00 3.16
3766 4573 0.766131 ACGTTACCCAATCCACCACA 59.234 50.000 0.00 0.00 0.00 4.17
3767 4574 1.161843 CACGTTACCCAATCCACCAC 58.838 55.000 0.00 0.00 0.00 4.16
3768 4575 0.766131 ACACGTTACCCAATCCACCA 59.234 50.000 0.00 0.00 0.00 4.17
3770 4577 2.004733 GCTACACGTTACCCAATCCAC 58.995 52.381 0.00 0.00 0.00 4.02
3771 4578 1.624312 TGCTACACGTTACCCAATCCA 59.376 47.619 0.00 0.00 0.00 3.41
3772 4579 2.389962 TGCTACACGTTACCCAATCC 57.610 50.000 0.00 0.00 0.00 3.01
3773 4580 3.063452 CACATGCTACACGTTACCCAATC 59.937 47.826 0.00 0.00 0.00 2.67
3774 4581 3.006940 CACATGCTACACGTTACCCAAT 58.993 45.455 0.00 0.00 0.00 3.16
3775 4582 2.418692 CACATGCTACACGTTACCCAA 58.581 47.619 0.00 0.00 0.00 4.12
3776 4583 1.338294 CCACATGCTACACGTTACCCA 60.338 52.381 0.00 0.00 0.00 4.51
3777 4584 1.365699 CCACATGCTACACGTTACCC 58.634 55.000 0.00 0.00 0.00 3.69
3778 4585 0.725117 GCCACATGCTACACGTTACC 59.275 55.000 0.00 0.00 36.87 2.85
3779 4586 1.434555 TGCCACATGCTACACGTTAC 58.565 50.000 0.00 0.00 42.00 2.50
3780 4587 2.276201 GATGCCACATGCTACACGTTA 58.724 47.619 0.00 0.00 42.00 3.18
3781 4588 1.086696 GATGCCACATGCTACACGTT 58.913 50.000 0.00 0.00 42.00 3.99
3782 4589 1.083806 CGATGCCACATGCTACACGT 61.084 55.000 0.00 0.00 42.00 4.49
3783 4590 1.083806 ACGATGCCACATGCTACACG 61.084 55.000 0.00 0.00 42.00 4.49
3784 4591 0.374758 CACGATGCCACATGCTACAC 59.625 55.000 0.00 0.00 42.00 2.90
3785 4592 1.368345 GCACGATGCCACATGCTACA 61.368 55.000 0.00 0.00 42.00 2.74
3786 4593 1.091771 AGCACGATGCCACATGCTAC 61.092 55.000 6.39 0.00 46.36 3.58
3787 4594 1.221566 AGCACGATGCCACATGCTA 59.778 52.632 6.39 0.00 46.36 3.49
3788 4595 2.045634 AGCACGATGCCACATGCT 60.046 55.556 6.39 0.00 46.52 3.79
3789 4596 1.074319 CAAAGCACGATGCCACATGC 61.074 55.000 6.39 0.00 46.52 4.06
3790 4597 0.522626 TCAAAGCACGATGCCACATG 59.477 50.000 6.39 0.00 46.52 3.21
3791 4598 0.806868 CTCAAAGCACGATGCCACAT 59.193 50.000 6.39 0.00 46.52 3.21
3792 4599 1.236616 CCTCAAAGCACGATGCCACA 61.237 55.000 6.39 0.00 46.52 4.17
3793 4600 1.503542 CCTCAAAGCACGATGCCAC 59.496 57.895 6.39 0.00 46.52 5.01
3794 4601 1.675310 CCCTCAAAGCACGATGCCA 60.675 57.895 6.39 0.00 46.52 4.92
3795 4602 2.409870 CCCCTCAAAGCACGATGCC 61.410 63.158 6.39 0.00 46.52 4.40
3796 4603 0.960364 TTCCCCTCAAAGCACGATGC 60.960 55.000 0.00 0.00 45.46 3.91
3797 4604 1.533625 TTTCCCCTCAAAGCACGATG 58.466 50.000 0.00 0.00 0.00 3.84
3798 4605 2.514458 ATTTCCCCTCAAAGCACGAT 57.486 45.000 0.00 0.00 0.00 3.73
3799 4606 2.286365 AATTTCCCCTCAAAGCACGA 57.714 45.000 0.00 0.00 0.00 4.35
3800 4607 2.295909 TCAAATTTCCCCTCAAAGCACG 59.704 45.455 0.00 0.00 0.00 5.34
3801 4608 4.541973 ATCAAATTTCCCCTCAAAGCAC 57.458 40.909 0.00 0.00 0.00 4.40
3802 4609 6.872585 AATATCAAATTTCCCCTCAAAGCA 57.127 33.333 0.00 0.00 0.00 3.91
3803 4610 8.565896 AAAAATATCAAATTTCCCCTCAAAGC 57.434 30.769 0.00 0.00 0.00 3.51
3827 4634 8.225603 AGATGAGTTCTAGCAAAACTGAAAAA 57.774 30.769 0.32 0.00 37.10 1.94
3828 4635 7.807977 AGATGAGTTCTAGCAAAACTGAAAA 57.192 32.000 0.32 0.00 37.10 2.29
3829 4636 8.539770 CTAGATGAGTTCTAGCAAAACTGAAA 57.460 34.615 0.32 0.00 45.63 2.69
3870 4677 8.084684 GCTCTAAAAGGTGAATGAGACAAAATT 58.915 33.333 0.00 0.00 0.00 1.82
3871 4678 7.231317 TGCTCTAAAAGGTGAATGAGACAAAAT 59.769 33.333 0.00 0.00 0.00 1.82
3872 4679 6.545666 TGCTCTAAAAGGTGAATGAGACAAAA 59.454 34.615 0.00 0.00 0.00 2.44
3873 4680 6.061441 TGCTCTAAAAGGTGAATGAGACAAA 58.939 36.000 0.00 0.00 0.00 2.83
3874 4681 5.620206 TGCTCTAAAAGGTGAATGAGACAA 58.380 37.500 0.00 0.00 0.00 3.18
3875 4682 5.227569 TGCTCTAAAAGGTGAATGAGACA 57.772 39.130 0.00 0.00 0.00 3.41
3876 4683 6.112058 AGATGCTCTAAAAGGTGAATGAGAC 58.888 40.000 0.00 0.00 0.00 3.36
3877 4684 6.305272 AGATGCTCTAAAAGGTGAATGAGA 57.695 37.500 0.00 0.00 0.00 3.27
3878 4685 6.596888 TGAAGATGCTCTAAAAGGTGAATGAG 59.403 38.462 0.00 0.00 0.00 2.90
3879 4686 6.475504 TGAAGATGCTCTAAAAGGTGAATGA 58.524 36.000 0.00 0.00 0.00 2.57
3880 4687 6.748333 TGAAGATGCTCTAAAAGGTGAATG 57.252 37.500 0.00 0.00 0.00 2.67
3881 4688 7.951347 ATTGAAGATGCTCTAAAAGGTGAAT 57.049 32.000 0.00 0.00 0.00 2.57
3882 4689 8.321353 TCTATTGAAGATGCTCTAAAAGGTGAA 58.679 33.333 0.00 0.00 0.00 3.18
3883 4690 7.851228 TCTATTGAAGATGCTCTAAAAGGTGA 58.149 34.615 0.00 0.00 0.00 4.02
3884 4691 8.674263 ATCTATTGAAGATGCTCTAAAAGGTG 57.326 34.615 0.00 0.00 43.62 4.00
4006 4814 6.168389 GCTCTTTTGGACAATCAATTTGGAT 58.832 36.000 0.00 0.00 39.80 3.41
4018 4826 2.727123 TGGAGTTGCTCTTTTGGACA 57.273 45.000 0.00 0.00 0.00 4.02
4164 4973 6.372103 CCGACGATGAGGAGTAGTTTATCTAT 59.628 42.308 0.00 0.00 0.00 1.98
4526 5362 0.815734 GATCGAGAGTCGGGTGGAAA 59.184 55.000 0.00 0.00 40.88 3.13
4707 5544 1.603739 GGGCAAGTCCGGCTTCTTT 60.604 57.895 7.99 0.00 34.69 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.