Multiple sequence alignment - TraesCS7B01G283200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G283200 chr7B 100.000 6464 0 0 1 6464 517329147 517322684 0.000000e+00 11937.0
1 TraesCS7B01G283200 chr7B 87.447 1641 145 28 3184 4804 517314928 517313329 0.000000e+00 1832.0
2 TraesCS7B01G283200 chr7B 82.027 1391 145 63 4810 6133 517313267 517311915 0.000000e+00 1086.0
3 TraesCS7B01G283200 chr7B 84.825 257 29 10 2936 3183 517315753 517315498 3.870000e-62 250.0
4 TraesCS7B01G283200 chr7D 93.811 3797 139 22 935 4722 488797039 488793330 0.000000e+00 5622.0
5 TraesCS7B01G283200 chr7D 84.011 3171 257 114 3184 6198 488787006 488783930 0.000000e+00 2817.0
6 TraesCS7B01G283200 chr7D 92.157 1173 39 14 4813 5969 488793197 488792062 0.000000e+00 1607.0
7 TraesCS7B01G283200 chr7D 85.823 924 54 39 1 873 488797953 488797056 0.000000e+00 909.0
8 TraesCS7B01G283200 chr7D 95.455 462 11 5 5968 6421 488792025 488791566 0.000000e+00 728.0
9 TraesCS7B01G283200 chr7D 82.867 286 34 13 2910 3183 488787872 488787590 6.480000e-60 243.0
10 TraesCS7B01G283200 chr7D 96.721 61 2 0 4757 4817 488793321 488793261 1.150000e-17 102.0
11 TraesCS7B01G283200 chr7D 81.102 127 12 5 6295 6421 82462121 82462235 2.480000e-14 91.6
12 TraesCS7B01G283200 chr7D 92.982 57 4 0 6408 6464 383982253 383982197 4.150000e-12 84.2
13 TraesCS7B01G283200 chr7A 96.557 2062 54 9 2767 4817 556173343 556171288 0.000000e+00 3398.0
14 TraesCS7B01G283200 chr7A 90.734 1349 85 25 4813 6149 556171224 556169904 0.000000e+00 1762.0
15 TraesCS7B01G283200 chr7A 87.396 1325 122 25 3190 4496 556164711 556163414 0.000000e+00 1480.0
16 TraesCS7B01G283200 chr7A 89.766 1153 59 27 935 2078 556175649 556174547 0.000000e+00 1421.0
17 TraesCS7B01G283200 chr7A 94.925 670 17 7 2068 2721 556174222 556173554 0.000000e+00 1033.0
18 TraesCS7B01G283200 chr7A 84.462 1004 81 30 4969 5916 556162586 556161602 0.000000e+00 920.0
19 TraesCS7B01G283200 chr7A 84.878 615 49 19 283 861 556176288 556175682 1.210000e-161 580.0
20 TraesCS7B01G283200 chr7A 87.097 310 38 2 4496 4804 556163462 556163154 3.710000e-92 350.0
21 TraesCS7B01G283200 chr7A 83.566 286 34 12 2910 3183 556165558 556165274 8.320000e-64 255.0
22 TraesCS7B01G283200 chr7A 87.582 153 10 2 6269 6421 556169898 556169755 1.110000e-37 169.0
23 TraesCS7B01G283200 chr7A 80.672 238 18 7 5984 6198 556161079 556160847 6.710000e-35 159.0
24 TraesCS7B01G283200 chr7A 92.453 53 3 1 6413 6464 686624972 686625024 2.500000e-09 75.0
25 TraesCS7B01G283200 chr7A 92.453 53 3 1 6413 6464 686634561 686634613 2.500000e-09 75.0
26 TraesCS7B01G283200 chr6D 86.695 233 20 8 6194 6420 84073534 84073307 1.390000e-61 248.0
27 TraesCS7B01G283200 chr6D 77.957 186 27 9 6245 6421 449130592 449130772 3.190000e-18 104.0
28 TraesCS7B01G283200 chr6A 85.714 231 22 8 6196 6420 101297661 101297436 3.900000e-57 233.0
29 TraesCS7B01G283200 chr6A 79.907 214 32 7 6194 6403 472356347 472356553 5.220000e-31 147.0
30 TraesCS7B01G283200 chr6A 84.397 141 19 3 6240 6380 594987970 594988107 1.130000e-27 135.0
31 TraesCS7B01G283200 chr6B 84.914 232 26 7 6195 6422 159692017 159691791 6.520000e-55 226.0
32 TraesCS7B01G283200 chr6B 80.541 185 25 6 6245 6421 680933553 680933372 1.460000e-26 132.0
33 TraesCS7B01G283200 chr6B 92.308 52 4 0 6413 6464 658834619 658834568 2.500000e-09 75.0
34 TraesCS7B01G283200 chr5B 80.435 184 30 5 6240 6420 91113839 91114019 1.130000e-27 135.0
35 TraesCS7B01G283200 chr1B 97.826 46 1 0 6419 6464 213917813 213917858 5.370000e-11 80.5
36 TraesCS7B01G283200 chrUn 97.778 45 1 0 6420 6464 1052826 1052870 1.930000e-10 78.7
37 TraesCS7B01G283200 chrUn 97.778 45 1 0 6420 6464 326096820 326096776 1.930000e-10 78.7
38 TraesCS7B01G283200 chrUn 97.778 45 1 0 6420 6464 349580951 349580995 1.930000e-10 78.7
39 TraesCS7B01G283200 chr2A 92.593 54 3 1 6412 6464 692703262 692703315 6.950000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G283200 chr7B 517322684 517329147 6463 True 11937.000000 11937 100.000000 1 6464 1 chr7B.!!$R1 6463
1 TraesCS7B01G283200 chr7B 517311915 517315753 3838 True 1056.000000 1832 84.766333 2936 6133 3 chr7B.!!$R2 3197
2 TraesCS7B01G283200 chr7D 488783930 488797953 14023 True 1718.285714 5622 90.120714 1 6421 7 chr7D.!!$R2 6420
3 TraesCS7B01G283200 chr7A 556169755 556176288 6533 True 1393.833333 3398 90.740333 283 6421 6 chr7A.!!$R2 6138
4 TraesCS7B01G283200 chr7A 556160847 556165558 4711 True 632.800000 1480 84.638600 2910 6198 5 chr7A.!!$R1 3288

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 906 0.034186 TGGGTGGATCATGTTCTGCC 60.034 55.000 3.86 6.27 0.00 4.85 F
1040 1119 1.065102 GCCGTCGTATAACTCTGCTGA 59.935 52.381 0.00 0.00 0.00 4.26 F
1691 1771 0.179032 TGCACTGAATGGTCAACGGT 60.179 50.000 0.00 0.00 31.88 4.83 F
1700 1780 0.393820 TGGTCAACGGTCCTAACACC 59.606 55.000 0.00 0.00 0.00 4.16 F
1701 1781 0.683412 GGTCAACGGTCCTAACACCT 59.317 55.000 0.00 0.00 33.77 4.00 F
2108 2525 1.068121 AGGGCTTTGCTACTTCACCT 58.932 50.000 0.00 0.00 0.00 4.00 F
2505 2923 1.809567 CTTGCTTTGGGGTCCACTGC 61.810 60.000 0.00 0.00 34.23 4.40 F
4338 5561 0.764890 CCTCCACCAACAAGGACTCA 59.235 55.000 0.00 0.00 41.22 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 1752 0.179032 ACCGTTGACCATTCAGTGCA 60.179 50.000 0.00 0.00 31.71 4.57 R
2879 3476 0.247460 GAGGCAAGGGTTTGGAATGC 59.753 55.000 0.00 0.00 34.79 3.56 R
3136 3743 7.388500 ACATTTCATTGAAAATCCATGGTCAAC 59.612 33.333 15.57 5.09 35.11 3.18 R
3508 4713 8.593492 TTATCAGAAGAACATGATATTGACCG 57.407 34.615 0.00 0.00 38.02 4.79 R
3936 5159 1.369625 AATTGTCGAATGACCGAGCC 58.630 50.000 0.00 0.00 44.86 4.70 R
3983 5206 4.051237 CCAGAAAAACAGCTAAAGGTTGC 58.949 43.478 0.00 0.00 0.00 4.17 R
4486 5709 1.165907 CCGCAGGCTGTGAACTTTCA 61.166 55.000 28.65 0.00 46.14 2.69 R
6216 16291 0.107410 AGTGGTTGCACCGACTTTCA 60.107 50.000 0.00 0.00 42.58 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.069443 GCTTTCAGATAGAGAGTGGAGGG 59.931 52.174 0.00 0.00 31.32 4.30
42 49 1.000993 GGGAGGTCAGAGGAGCAGA 59.999 63.158 0.00 0.00 43.97 4.26
193 200 2.433436 GGGCGTACAAATCTTGGTCTT 58.567 47.619 0.00 0.00 34.12 3.01
203 210 5.221722 ACAAATCTTGGTCTTAGCTGACTCA 60.222 40.000 0.00 0.00 37.16 3.41
216 223 1.267574 TGACTCAGCACATCCCCTCC 61.268 60.000 0.00 0.00 0.00 4.30
221 236 1.081833 AGCACATCCCCTCCACTCT 59.918 57.895 0.00 0.00 0.00 3.24
225 240 0.716591 ACATCCCCTCCACTCTACCA 59.283 55.000 0.00 0.00 0.00 3.25
248 265 2.364317 CTTCCCTCCCGGAGCAGA 60.364 66.667 9.17 5.16 43.39 4.26
312 330 1.211703 TCCCTGCGGATTGCTGATTTA 59.788 47.619 0.00 0.00 46.63 1.40
314 332 3.072330 TCCCTGCGGATTGCTGATTTATA 59.928 43.478 0.00 0.00 46.63 0.98
335 353 0.322098 ATTCGGGGATGTTGTTGCGA 60.322 50.000 0.00 0.00 0.00 5.10
344 366 2.713895 TGTTGTTGCGAGAGAGAGAG 57.286 50.000 0.00 0.00 0.00 3.20
345 367 2.230660 TGTTGTTGCGAGAGAGAGAGA 58.769 47.619 0.00 0.00 0.00 3.10
346 368 2.227626 TGTTGTTGCGAGAGAGAGAGAG 59.772 50.000 0.00 0.00 0.00 3.20
347 369 2.481289 TGTTGCGAGAGAGAGAGAGA 57.519 50.000 0.00 0.00 0.00 3.10
348 370 2.355197 TGTTGCGAGAGAGAGAGAGAG 58.645 52.381 0.00 0.00 0.00 3.20
349 371 2.027653 TGTTGCGAGAGAGAGAGAGAGA 60.028 50.000 0.00 0.00 0.00 3.10
394 419 2.749621 GTTGATTGATTCTGGTTCCGCT 59.250 45.455 0.00 0.00 0.00 5.52
405 430 3.997397 TTCCGCTGCGCTACCACA 61.997 61.111 18.00 0.00 0.00 4.17
428 453 1.607148 GGCAAGTTGGTATAATCCCGC 59.393 52.381 4.75 0.00 0.00 6.13
430 455 2.032924 GCAAGTTGGTATAATCCCGCAC 59.967 50.000 4.75 0.00 0.00 5.34
470 495 0.519077 CCGCCTTGTCTCTTTCTTGC 59.481 55.000 0.00 0.00 0.00 4.01
471 496 0.164647 CGCCTTGTCTCTTTCTTGCG 59.835 55.000 0.00 0.00 34.52 4.85
472 497 1.512926 GCCTTGTCTCTTTCTTGCGA 58.487 50.000 0.00 0.00 0.00 5.10
473 498 1.195674 GCCTTGTCTCTTTCTTGCGAC 59.804 52.381 0.00 0.00 0.00 5.19
478 503 0.944311 TCTCTTTCTTGCGACGGTGC 60.944 55.000 0.00 0.00 0.00 5.01
491 532 2.103538 GGTGCGCGATTCTCCGTA 59.896 61.111 12.10 0.00 0.00 4.02
549 594 3.056749 AGTTCGTCGAATGCTCCTAAGTT 60.057 43.478 11.45 0.00 0.00 2.66
553 598 3.546670 CGTCGAATGCTCCTAAGTTGTAC 59.453 47.826 0.00 0.00 0.00 2.90
556 601 5.972382 GTCGAATGCTCCTAAGTTGTACTAG 59.028 44.000 0.00 0.00 0.00 2.57
558 603 6.825213 TCGAATGCTCCTAAGTTGTACTAGTA 59.175 38.462 0.00 0.00 0.00 1.82
559 604 7.337689 TCGAATGCTCCTAAGTTGTACTAGTAA 59.662 37.037 3.61 0.00 0.00 2.24
560 605 8.136165 CGAATGCTCCTAAGTTGTACTAGTAAT 58.864 37.037 3.61 0.00 0.00 1.89
561 606 9.819267 GAATGCTCCTAAGTTGTACTAGTAATT 57.181 33.333 3.61 0.70 0.00 1.40
564 609 6.479331 GCTCCTAAGTTGTACTAGTAATTGGC 59.521 42.308 3.61 0.00 0.00 4.52
565 610 6.567050 TCCTAAGTTGTACTAGTAATTGGCG 58.433 40.000 3.61 0.00 0.00 5.69
566 611 6.153340 TCCTAAGTTGTACTAGTAATTGGCGT 59.847 38.462 3.61 0.00 0.00 5.68
567 612 6.815142 CCTAAGTTGTACTAGTAATTGGCGTT 59.185 38.462 3.61 0.00 0.00 4.84
568 613 7.332678 CCTAAGTTGTACTAGTAATTGGCGTTT 59.667 37.037 3.61 0.00 0.00 3.60
569 614 7.500720 AAGTTGTACTAGTAATTGGCGTTTT 57.499 32.000 3.61 0.00 0.00 2.43
570 615 8.606040 AAGTTGTACTAGTAATTGGCGTTTTA 57.394 30.769 3.61 0.00 0.00 1.52
651 697 2.233676 TCGATATGCCCGATGCTTGTAT 59.766 45.455 0.00 0.00 42.00 2.29
652 698 2.349580 CGATATGCCCGATGCTTGTATG 59.650 50.000 0.00 0.00 42.00 2.39
653 699 2.928801 TATGCCCGATGCTTGTATGT 57.071 45.000 0.00 0.00 42.00 2.29
654 700 2.928801 ATGCCCGATGCTTGTATGTA 57.071 45.000 0.00 0.00 42.00 2.29
655 701 2.238942 TGCCCGATGCTTGTATGTAG 57.761 50.000 0.00 0.00 42.00 2.74
656 702 1.202639 TGCCCGATGCTTGTATGTAGG 60.203 52.381 0.00 0.00 42.00 3.18
657 703 1.878102 GCCCGATGCTTGTATGTAGGG 60.878 57.143 0.00 0.00 40.49 3.53
658 704 1.691976 CCCGATGCTTGTATGTAGGGA 59.308 52.381 0.00 0.00 39.95 4.20
754 819 1.875514 GGGTGTGAAACTTACCCGTTC 59.124 52.381 0.00 0.00 44.13 3.95
789 858 2.117051 ACCCCTCCTCGAATTAGGAAC 58.883 52.381 8.55 0.00 45.08 3.62
795 864 3.618351 TCCTCGAATTAGGAACTCGTCT 58.382 45.455 0.00 0.00 42.83 4.18
819 890 8.739039 TCTAAAAGTTCACATGTAATTGATGGG 58.261 33.333 0.00 0.93 0.00 4.00
835 906 0.034186 TGGGTGGATCATGTTCTGCC 60.034 55.000 3.86 6.27 0.00 4.85
862 934 7.781324 AACACCAGGATTTCTTGATTTATGT 57.219 32.000 0.00 0.00 0.00 2.29
864 936 6.038356 CACCAGGATTTCTTGATTTATGTGC 58.962 40.000 0.00 0.00 0.00 4.57
873 945 8.722342 TTTCTTGATTTATGTGCGAAAAGTAC 57.278 30.769 0.00 0.00 35.92 2.73
885 957 8.312896 TGTGCGAAAAGTACATTATTACTTGA 57.687 30.769 0.00 0.00 40.69 3.02
903 975 9.769093 ATTACTTGATTTATGTGCGAAAAGTAC 57.231 29.630 0.00 0.00 35.92 2.73
915 987 8.312896 TGTGCGAAAAGTACATTATTACTTGA 57.687 30.769 0.00 0.00 40.69 3.02
916 988 8.941977 TGTGCGAAAAGTACATTATTACTTGAT 58.058 29.630 0.00 0.00 40.69 2.57
917 989 9.769093 GTGCGAAAAGTACATTATTACTTGATT 57.231 29.630 0.00 0.00 40.69 2.57
938 1010 8.942338 TGATTTATGTGCGAAAACTATCTAGT 57.058 30.769 0.00 0.00 38.39 2.57
946 1018 6.364165 GTGCGAAAACTATCTAGTTGTGTACA 59.636 38.462 3.47 0.00 45.17 2.90
985 1064 6.270000 TCTCTTCTATTCACCAGGAAGTTCAA 59.730 38.462 5.01 0.00 39.30 2.69
987 1066 5.825593 TCTATTCACCAGGAAGTTCAACT 57.174 39.130 5.01 0.00 39.30 3.16
988 1067 6.928348 TCTATTCACCAGGAAGTTCAACTA 57.072 37.500 5.01 0.00 39.30 2.24
993 1072 3.251004 CACCAGGAAGTTCAACTAAGTGC 59.749 47.826 5.01 0.00 0.00 4.40
998 1077 4.345257 AGGAAGTTCAACTAAGTGCTGAGA 59.655 41.667 5.01 0.00 0.00 3.27
1037 1116 1.852895 CAAGCCGTCGTATAACTCTGC 59.147 52.381 0.00 0.00 0.00 4.26
1038 1117 1.390565 AGCCGTCGTATAACTCTGCT 58.609 50.000 0.00 0.00 0.00 4.24
1039 1118 1.065701 AGCCGTCGTATAACTCTGCTG 59.934 52.381 0.00 0.00 0.00 4.41
1040 1119 1.065102 GCCGTCGTATAACTCTGCTGA 59.935 52.381 0.00 0.00 0.00 4.26
1041 1120 2.717530 CCGTCGTATAACTCTGCTGAC 58.282 52.381 0.00 0.00 0.00 3.51
1042 1121 2.355132 CCGTCGTATAACTCTGCTGACT 59.645 50.000 0.00 0.00 0.00 3.41
1043 1122 3.558829 CCGTCGTATAACTCTGCTGACTA 59.441 47.826 0.00 0.00 0.00 2.59
1044 1123 4.213694 CCGTCGTATAACTCTGCTGACTAT 59.786 45.833 0.00 0.00 0.00 2.12
1045 1124 5.140872 CGTCGTATAACTCTGCTGACTATG 58.859 45.833 0.00 0.00 0.00 2.23
1085 1164 5.989777 GGTATAACTCGAGGTATGCAAACAT 59.010 40.000 31.25 11.31 40.49 2.71
1104 1183 2.602676 GCCCTCCAGTTACAGCCCA 61.603 63.158 0.00 0.00 0.00 5.36
1262 1341 5.348986 GTTCTCTTGTTTTCCTTTCCCAAC 58.651 41.667 0.00 0.00 0.00 3.77
1344 1423 2.370519 TCGTCTCAGGTGGATTTTGGAA 59.629 45.455 0.00 0.00 0.00 3.53
1418 1497 7.348537 AGAAGGATAGGGCTTTAAGTATTCTGT 59.651 37.037 0.00 0.00 0.00 3.41
1470 1549 4.697352 GCAAAGGAAGTTATCTCTTGCTCA 59.303 41.667 1.45 0.00 43.34 4.26
1477 1556 8.658619 AGGAAGTTATCTCTTGCTCAATATGAT 58.341 33.333 0.00 0.00 41.02 2.45
1489 1569 9.181805 CTTGCTCAATATGATTATTTCTGCAAG 57.818 33.333 0.00 0.00 40.85 4.01
1556 1636 9.683069 CATGTTCTTTTCAATTGTACTAGCTTT 57.317 29.630 5.13 0.00 0.00 3.51
1568 1648 4.719773 TGTACTAGCTTTGGGGACATACAT 59.280 41.667 0.00 0.00 42.32 2.29
1569 1649 5.900699 TGTACTAGCTTTGGGGACATACATA 59.099 40.000 0.00 0.00 42.32 2.29
1571 1651 4.719773 ACTAGCTTTGGGGACATACATACA 59.280 41.667 0.00 0.00 42.32 2.29
1572 1652 4.156455 AGCTTTGGGGACATACATACAG 57.844 45.455 0.00 0.00 42.32 2.74
1573 1653 3.523564 AGCTTTGGGGACATACATACAGT 59.476 43.478 0.00 0.00 42.32 3.55
1574 1654 3.877508 GCTTTGGGGACATACATACAGTC 59.122 47.826 0.00 0.00 42.32 3.51
1575 1655 4.384208 GCTTTGGGGACATACATACAGTCT 60.384 45.833 0.00 0.00 42.32 3.24
1576 1656 5.745227 CTTTGGGGACATACATACAGTCTT 58.255 41.667 0.00 0.00 42.32 3.01
1577 1657 4.753516 TGGGGACATACATACAGTCTTG 57.246 45.455 0.00 0.00 33.40 3.02
1597 1677 6.955963 GTCTTGTCTCTTGTATAATTTGCACG 59.044 38.462 0.00 0.00 0.00 5.34
1667 1747 7.434897 ACAATGTTACTTACAAGTGTGCAATTG 59.565 33.333 10.29 10.29 40.89 2.32
1670 1750 6.261158 TGTTACTTACAAGTGTGCAATTGCTA 59.739 34.615 29.37 16.62 39.72 3.49
1672 1752 6.331369 ACTTACAAGTGTGCAATTGCTAAT 57.669 33.333 29.37 15.79 39.72 1.73
1673 1753 6.151691 ACTTACAAGTGTGCAATTGCTAATG 58.848 36.000 29.37 21.28 39.72 1.90
1674 1754 3.319755 ACAAGTGTGCAATTGCTAATGC 58.680 40.909 29.37 15.28 39.72 3.56
1675 1755 9.550745 ACTTACAAGTGTGCAATTGCTAATGCA 62.551 37.037 29.37 17.10 43.02 3.96
1686 1766 3.070476 TGCTAATGCACTGAATGGTCA 57.930 42.857 0.00 0.00 45.31 4.02
1687 1767 3.419943 TGCTAATGCACTGAATGGTCAA 58.580 40.909 0.00 0.00 45.31 3.18
1688 1768 3.191162 TGCTAATGCACTGAATGGTCAAC 59.809 43.478 0.00 0.00 45.31 3.18
1689 1769 2.995466 AATGCACTGAATGGTCAACG 57.005 45.000 0.00 0.00 31.88 4.10
1690 1770 1.167851 ATGCACTGAATGGTCAACGG 58.832 50.000 0.00 0.00 31.88 4.44
1691 1771 0.179032 TGCACTGAATGGTCAACGGT 60.179 50.000 0.00 0.00 31.88 4.83
1692 1772 0.517316 GCACTGAATGGTCAACGGTC 59.483 55.000 0.00 0.00 31.88 4.79
1693 1773 1.156736 CACTGAATGGTCAACGGTCC 58.843 55.000 0.00 0.00 31.88 4.46
1694 1774 1.056660 ACTGAATGGTCAACGGTCCT 58.943 50.000 0.00 0.00 31.88 3.85
1695 1775 2.028476 CACTGAATGGTCAACGGTCCTA 60.028 50.000 0.00 0.00 31.88 2.94
1696 1776 2.635915 ACTGAATGGTCAACGGTCCTAA 59.364 45.455 0.00 0.00 31.88 2.69
1697 1777 3.000727 CTGAATGGTCAACGGTCCTAAC 58.999 50.000 0.00 0.00 31.88 2.34
1698 1778 2.369203 TGAATGGTCAACGGTCCTAACA 59.631 45.455 0.00 0.00 0.00 2.41
1699 1779 2.467566 ATGGTCAACGGTCCTAACAC 57.532 50.000 0.00 0.00 0.00 3.32
1700 1780 0.393820 TGGTCAACGGTCCTAACACC 59.606 55.000 0.00 0.00 0.00 4.16
1701 1781 0.683412 GGTCAACGGTCCTAACACCT 59.317 55.000 0.00 0.00 33.77 4.00
1702 1782 1.895131 GGTCAACGGTCCTAACACCTA 59.105 52.381 0.00 0.00 33.77 3.08
1703 1783 2.094338 GGTCAACGGTCCTAACACCTAG 60.094 54.545 0.00 0.00 33.77 3.02
1704 1784 2.560105 GTCAACGGTCCTAACACCTAGT 59.440 50.000 0.00 0.00 33.77 2.57
1705 1785 3.006217 GTCAACGGTCCTAACACCTAGTT 59.994 47.826 0.00 0.00 44.27 2.24
1720 1800 6.951971 ACACCTAGTTCAAATATGAGAAGCT 58.048 36.000 0.00 0.00 36.78 3.74
1725 1805 7.981789 CCTAGTTCAAATATGAGAAGCTGTACA 59.018 37.037 0.00 0.00 36.78 2.90
2053 2133 2.488153 GTGGACCATTAAGCTGACAACC 59.512 50.000 0.00 0.00 0.00 3.77
2108 2525 1.068121 AGGGCTTTGCTACTTCACCT 58.932 50.000 0.00 0.00 0.00 4.00
2230 2648 6.380846 TGGATTCTACCAGCTTATGCATTTTT 59.619 34.615 3.54 0.00 42.74 1.94
2241 2659 7.484007 CAGCTTATGCATTTTTCTCAAGTACTG 59.516 37.037 3.54 0.94 42.74 2.74
2282 2700 5.655488 ACAAGAGTCTTCCACATATTCTCG 58.345 41.667 1.26 0.00 0.00 4.04
2292 2710 5.838529 TCCACATATTCTCGCTTTCGATTA 58.161 37.500 0.00 0.00 44.56 1.75
2505 2923 1.809567 CTTGCTTTGGGGTCCACTGC 61.810 60.000 0.00 0.00 34.23 4.40
2506 2924 2.991540 GCTTTGGGGTCCACTGCC 60.992 66.667 0.00 0.00 30.78 4.85
2522 2940 6.092259 GTCCACTGCCGCCTATTATTTATTAG 59.908 42.308 0.00 0.00 0.00 1.73
2560 2983 7.948278 GTAGAATACTAGTTAGTTGCCCATG 57.052 40.000 0.00 0.00 38.91 3.66
2566 2997 5.731591 ACTAGTTAGTTGCCCATGTAGTTC 58.268 41.667 0.00 0.00 31.13 3.01
2874 3471 3.249091 CTGCCGCTGTCTACATGATATC 58.751 50.000 0.00 0.00 0.00 1.63
2879 3476 4.162072 CGCTGTCTACATGATATCGGAAG 58.838 47.826 0.00 0.00 0.00 3.46
2907 3504 2.938956 ACCCTTGCCTCTATATGTGC 57.061 50.000 0.00 0.00 0.00 4.57
3136 3743 7.438160 AGCTTAAGGTTCCAATTTTCTTTTTCG 59.562 33.333 0.12 0.00 0.00 3.46
3156 3768 5.058149 TCGTTGACCATGGATTTTCAATG 57.942 39.130 21.47 21.21 36.65 2.82
3390 4594 5.474876 AGAGGAACAAAATTGCTACCAGAAG 59.525 40.000 0.00 0.00 0.00 2.85
3596 4803 7.020010 GTGCTTCTGAATCACATGTTCTTTAG 58.980 38.462 16.95 0.00 0.00 1.85
3936 5159 5.547341 CATAAGTTTGACGACAACATACCG 58.453 41.667 0.00 0.00 35.63 4.02
3983 5206 6.698329 CAGGTGATTGCCATACAAATTACATG 59.302 38.462 0.00 0.00 42.86 3.21
4114 5337 5.711506 TGATAGAAAAGAGGCTGAATTTGCA 59.288 36.000 0.00 0.00 0.00 4.08
4256 5479 2.874701 GCGACAATATTGCCATCTGACT 59.125 45.455 15.48 0.00 0.00 3.41
4338 5561 0.764890 CCTCCACCAACAAGGACTCA 59.235 55.000 0.00 0.00 41.22 3.41
4432 5655 3.446442 AGTGGGTTTCAGCAATCAGAT 57.554 42.857 0.00 0.00 0.00 2.90
4486 5709 3.135530 GGAGGCCTGACAGTTATTCATCT 59.864 47.826 12.00 0.00 0.00 2.90
4570 5793 5.294356 AGCACACTTGTACGTATCTTTTCA 58.706 37.500 0.00 0.00 0.00 2.69
4588 5812 5.533533 TTTCATGTTTACACCGTATTCCG 57.466 39.130 0.00 0.00 0.00 4.30
4730 5955 0.760572 TGCTAAGGGTTATACGGGGC 59.239 55.000 0.00 0.00 0.00 5.80
4891 6188 4.159135 CCCGTCTGTAGTAGCCTCTTTTTA 59.841 45.833 0.00 0.00 0.00 1.52
4892 6189 5.341617 CCGTCTGTAGTAGCCTCTTTTTAG 58.658 45.833 0.00 0.00 0.00 1.85
4938 6237 2.875933 ACATCGTCACGGAATTTGTGTT 59.124 40.909 0.00 0.00 38.48 3.32
4965 6603 7.387265 TTCATTAGATATGCCCCTGAACTTA 57.613 36.000 0.00 0.00 0.00 2.24
5045 6692 7.510549 TCTGCCTGTAAAATATTTATGCTCC 57.489 36.000 0.01 0.00 0.00 4.70
5066 6718 5.935945 TCCTTTTCAAATGTGGACTGTAGA 58.064 37.500 0.00 0.00 0.00 2.59
5068 6720 6.655003 TCCTTTTCAAATGTGGACTGTAGATC 59.345 38.462 0.00 0.00 0.00 2.75
5070 6722 4.801330 TCAAATGTGGACTGTAGATCGT 57.199 40.909 0.00 0.00 0.00 3.73
5071 6723 5.147330 TCAAATGTGGACTGTAGATCGTT 57.853 39.130 0.00 0.00 0.00 3.85
5072 6724 5.168569 TCAAATGTGGACTGTAGATCGTTC 58.831 41.667 0.00 0.00 0.00 3.95
5073 6725 4.801330 AATGTGGACTGTAGATCGTTCA 57.199 40.909 0.00 0.00 0.00 3.18
5074 6726 3.850122 TGTGGACTGTAGATCGTTCAG 57.150 47.619 11.31 11.31 35.60 3.02
5075 6727 3.418047 TGTGGACTGTAGATCGTTCAGA 58.582 45.455 17.09 0.00 33.93 3.27
5076 6728 3.190744 TGTGGACTGTAGATCGTTCAGAC 59.809 47.826 17.09 12.42 33.93 3.51
5077 6729 3.190744 GTGGACTGTAGATCGTTCAGACA 59.809 47.826 17.09 13.21 33.93 3.41
5078 6730 3.824443 TGGACTGTAGATCGTTCAGACAA 59.176 43.478 17.09 6.22 33.93 3.18
5079 6731 4.167268 GGACTGTAGATCGTTCAGACAAC 58.833 47.826 17.09 8.45 33.93 3.32
5080 6732 4.321008 GGACTGTAGATCGTTCAGACAACA 60.321 45.833 17.09 0.00 33.93 3.33
5124 6776 0.540133 TGCATCTTGTGGCCACATGT 60.540 50.000 36.97 26.37 41.52 3.21
5174 6867 8.500753 AGTTTGTGTATACTGACAAAGTTTGA 57.499 30.769 22.23 0.00 41.01 2.69
5200 6893 4.388577 ACTGCCAGACCCTCTAATTTTT 57.611 40.909 0.00 0.00 0.00 1.94
5291 6986 2.101917 GGATCTTGCATTTGGATGTGGG 59.898 50.000 0.00 0.00 35.63 4.61
5335 7037 7.996098 TCCCTTACTTTCCTCTAAACATTTG 57.004 36.000 0.00 0.00 0.00 2.32
5339 7041 8.015658 CCTTACTTTCCTCTAAACATTTGTTCG 58.984 37.037 0.00 0.00 37.25 3.95
5460 7162 1.135094 CCACCAGGATCAGGCTGTAT 58.865 55.000 15.27 6.77 36.89 2.29
5671 7397 5.764131 TGTGGATTGAATGTTTCGGTAAAC 58.236 37.500 0.00 0.00 44.40 2.01
5696 7422 2.031120 TGTGTTCCAAAAGGGCTCTTG 58.969 47.619 0.00 0.00 36.21 3.02
5927 15717 2.634982 TGTAAATACGACGAACGCCT 57.365 45.000 0.00 0.00 46.94 5.52
5966 15756 6.094464 TGAACCAATCAATCTTATCTGTGCTG 59.906 38.462 0.00 0.00 34.30 4.41
5971 15761 7.660617 CCAATCAATCTTATCTGTGCTGAGTAT 59.339 37.037 0.00 0.00 0.00 2.12
5976 15766 8.976471 CAATCTTATCTGTGCTGAGTATTACTG 58.024 37.037 0.00 0.00 0.00 2.74
5980 15770 9.619316 CTTATCTGTGCTGAGTATTACTGATAC 57.381 37.037 0.00 0.00 40.81 2.24
6022 16073 5.220024 GCTCAAACATATAAAAGCGTTGCAC 60.220 40.000 0.00 0.00 0.00 4.57
6041 16105 5.178061 TGCACTCACACTTTCATATACCAG 58.822 41.667 0.00 0.00 0.00 4.00
6093 16159 9.956640 AATTTGAGAGAGAGAATTGAAGTACAT 57.043 29.630 0.00 0.00 0.00 2.29
6099 16165 6.578023 AGAGAGAATTGAAGTACATGGTAGC 58.422 40.000 0.00 0.00 0.00 3.58
6198 16273 1.565067 GAGGTCTTAGGTCCGGGAAA 58.435 55.000 0.00 0.00 0.00 3.13
6199 16274 1.481363 GAGGTCTTAGGTCCGGGAAAG 59.519 57.143 0.00 0.00 0.00 2.62
6200 16275 1.078324 AGGTCTTAGGTCCGGGAAAGA 59.922 52.381 0.00 1.47 0.00 2.52
6201 16276 2.117051 GGTCTTAGGTCCGGGAAAGAT 58.883 52.381 11.69 0.00 31.16 2.40
6202 16277 2.504585 GGTCTTAGGTCCGGGAAAGATT 59.495 50.000 11.69 0.00 31.16 2.40
6203 16278 3.054582 GGTCTTAGGTCCGGGAAAGATTT 60.055 47.826 11.69 0.00 31.16 2.17
6204 16279 3.939592 GTCTTAGGTCCGGGAAAGATTTG 59.060 47.826 11.69 0.00 31.16 2.32
6205 16280 3.054655 TCTTAGGTCCGGGAAAGATTTGG 60.055 47.826 0.00 0.00 0.00 3.28
6206 16281 1.368374 AGGTCCGGGAAAGATTTGGA 58.632 50.000 0.00 0.00 0.00 3.53
6207 16282 1.923148 AGGTCCGGGAAAGATTTGGAT 59.077 47.619 0.00 0.00 0.00 3.41
6208 16283 2.311841 AGGTCCGGGAAAGATTTGGATT 59.688 45.455 0.00 0.00 0.00 3.01
6209 16284 3.526019 AGGTCCGGGAAAGATTTGGATTA 59.474 43.478 0.00 0.00 0.00 1.75
6210 16285 3.630769 GGTCCGGGAAAGATTTGGATTAC 59.369 47.826 0.00 0.00 0.00 1.89
6211 16286 4.524053 GTCCGGGAAAGATTTGGATTACT 58.476 43.478 0.00 0.00 0.00 2.24
6212 16287 4.575236 GTCCGGGAAAGATTTGGATTACTC 59.425 45.833 0.00 0.00 0.00 2.59
6213 16288 3.883489 CCGGGAAAGATTTGGATTACTCC 59.117 47.826 0.00 0.00 42.45 3.85
6214 16289 4.385310 CCGGGAAAGATTTGGATTACTCCT 60.385 45.833 0.00 0.00 42.59 3.69
6215 16290 5.163237 CCGGGAAAGATTTGGATTACTCCTA 60.163 44.000 0.00 0.00 42.59 2.94
6216 16291 6.465894 CCGGGAAAGATTTGGATTACTCCTAT 60.466 42.308 0.00 0.00 42.59 2.57
6217 16292 6.428159 CGGGAAAGATTTGGATTACTCCTATG 59.572 42.308 0.29 0.00 42.59 2.23
6218 16293 7.518188 GGGAAAGATTTGGATTACTCCTATGA 58.482 38.462 0.29 0.00 42.59 2.15
6219 16294 7.998964 GGGAAAGATTTGGATTACTCCTATGAA 59.001 37.037 0.29 0.00 42.59 2.57
6220 16295 9.408648 GGAAAGATTTGGATTACTCCTATGAAA 57.591 33.333 0.29 0.00 42.59 2.69
6222 16297 9.981460 AAAGATTTGGATTACTCCTATGAAAGT 57.019 29.630 0.29 0.00 42.59 2.66
6223 16298 9.620259 AAGATTTGGATTACTCCTATGAAAGTC 57.380 33.333 0.29 0.00 42.59 3.01
6224 16299 7.928706 AGATTTGGATTACTCCTATGAAAGTCG 59.071 37.037 0.29 0.00 42.59 4.18
6225 16300 5.531122 TGGATTACTCCTATGAAAGTCGG 57.469 43.478 0.29 0.00 42.59 4.79
6226 16301 4.960469 TGGATTACTCCTATGAAAGTCGGT 59.040 41.667 0.29 0.00 42.59 4.69
6227 16302 5.163447 TGGATTACTCCTATGAAAGTCGGTG 60.163 44.000 0.29 0.00 42.59 4.94
6228 16303 2.674796 ACTCCTATGAAAGTCGGTGC 57.325 50.000 0.00 0.00 0.00 5.01
6229 16304 1.899814 ACTCCTATGAAAGTCGGTGCA 59.100 47.619 0.00 0.00 0.00 4.57
6230 16305 2.301870 ACTCCTATGAAAGTCGGTGCAA 59.698 45.455 0.00 0.00 0.00 4.08
6231 16306 2.673368 CTCCTATGAAAGTCGGTGCAAC 59.327 50.000 0.00 0.00 0.00 4.17
6243 16318 2.487918 GTGCAACCACTGAACCACA 58.512 52.632 0.00 0.00 38.93 4.17
6244 16319 1.032014 GTGCAACCACTGAACCACAT 58.968 50.000 0.00 0.00 38.93 3.21
6245 16320 2.226330 GTGCAACCACTGAACCACATA 58.774 47.619 0.00 0.00 38.93 2.29
6246 16321 2.226437 GTGCAACCACTGAACCACATAG 59.774 50.000 0.00 0.00 38.93 2.23
6247 16322 2.105649 TGCAACCACTGAACCACATAGA 59.894 45.455 0.00 0.00 0.00 1.98
6248 16323 3.146066 GCAACCACTGAACCACATAGAA 58.854 45.455 0.00 0.00 0.00 2.10
6249 16324 3.189287 GCAACCACTGAACCACATAGAAG 59.811 47.826 0.00 0.00 0.00 2.85
6250 16325 3.703001 ACCACTGAACCACATAGAAGG 57.297 47.619 0.00 0.00 0.00 3.46
6251 16326 2.305927 ACCACTGAACCACATAGAAGGG 59.694 50.000 0.00 0.00 0.00 3.95
6252 16327 2.571653 CCACTGAACCACATAGAAGGGA 59.428 50.000 0.00 0.00 0.00 4.20
6253 16328 3.369892 CCACTGAACCACATAGAAGGGAG 60.370 52.174 0.00 0.00 0.00 4.30
6254 16329 3.261897 CACTGAACCACATAGAAGGGAGT 59.738 47.826 0.00 0.00 0.00 3.85
6255 16330 4.466370 CACTGAACCACATAGAAGGGAGTA 59.534 45.833 0.00 0.00 0.00 2.59
6256 16331 4.466726 ACTGAACCACATAGAAGGGAGTAC 59.533 45.833 0.00 0.00 0.00 2.73
6257 16332 3.773119 TGAACCACATAGAAGGGAGTACC 59.227 47.826 0.00 0.00 40.67 3.34
6258 16333 3.484953 ACCACATAGAAGGGAGTACCA 57.515 47.619 0.00 0.00 43.89 3.25
6259 16334 3.105283 ACCACATAGAAGGGAGTACCAC 58.895 50.000 0.00 0.00 43.89 4.16
6260 16335 3.104512 CCACATAGAAGGGAGTACCACA 58.895 50.000 0.00 0.00 43.89 4.17
6261 16336 3.711704 CCACATAGAAGGGAGTACCACAT 59.288 47.826 0.00 0.00 43.89 3.21
6262 16337 4.899457 CCACATAGAAGGGAGTACCACATA 59.101 45.833 0.00 0.00 43.89 2.29
6263 16338 5.221461 CCACATAGAAGGGAGTACCACATAC 60.221 48.000 0.00 0.00 43.89 2.39
6264 16339 5.362717 CACATAGAAGGGAGTACCACATACA 59.637 44.000 0.00 0.00 43.89 2.29
6267 16342 4.164981 AGAAGGGAGTACCACATACAACA 58.835 43.478 0.00 0.00 43.89 3.33
6285 16360 4.764823 ACAACACTTTCTTCAAGTTCACCA 59.235 37.500 0.00 0.00 43.89 4.17
6288 16363 5.192927 ACACTTTCTTCAAGTTCACCATGA 58.807 37.500 0.00 0.00 43.89 3.07
6294 16369 4.452114 TCTTCAAGTTCACCATGACATTCG 59.548 41.667 0.00 0.00 0.00 3.34
6296 16371 3.996363 TCAAGTTCACCATGACATTCGAG 59.004 43.478 0.00 0.00 0.00 4.04
6324 16399 6.019479 GCGAATACTCACGAAGATCTTCAAAT 60.019 38.462 29.93 15.23 39.46 2.32
6380 16455 2.152016 GGCAACAAGACCACTAGTTCC 58.848 52.381 0.00 0.00 0.00 3.62
6385 16460 2.633481 ACAAGACCACTAGTTCCACCTC 59.367 50.000 0.00 0.00 0.00 3.85
6404 16479 5.645067 CACCTCTATGTTTCATGTCATGTGT 59.355 40.000 12.54 0.00 0.00 3.72
6417 16492 5.384063 TGTCATGTGTGTTGAACTTTGTT 57.616 34.783 0.00 0.00 0.00 2.83
6421 16496 7.327275 TGTCATGTGTGTTGAACTTTGTTTTAC 59.673 33.333 0.00 0.00 0.00 2.01
6422 16497 7.540745 GTCATGTGTGTTGAACTTTGTTTTACT 59.459 33.333 0.00 0.00 0.00 2.24
6423 16498 8.731605 TCATGTGTGTTGAACTTTGTTTTACTA 58.268 29.630 0.00 0.00 0.00 1.82
6424 16499 9.009327 CATGTGTGTTGAACTTTGTTTTACTAG 57.991 33.333 0.00 0.00 0.00 2.57
6425 16500 8.101654 TGTGTGTTGAACTTTGTTTTACTAGT 57.898 30.769 0.00 0.00 0.00 2.57
6426 16501 8.231837 TGTGTGTTGAACTTTGTTTTACTAGTC 58.768 33.333 0.00 0.00 0.00 2.59
6427 16502 8.231837 GTGTGTTGAACTTTGTTTTACTAGTCA 58.768 33.333 0.00 0.00 0.00 3.41
6428 16503 8.784994 TGTGTTGAACTTTGTTTTACTAGTCAA 58.215 29.630 0.00 0.00 0.00 3.18
6429 16504 9.783256 GTGTTGAACTTTGTTTTACTAGTCAAT 57.217 29.630 0.00 0.00 0.00 2.57
6430 16505 9.781834 TGTTGAACTTTGTTTTACTAGTCAATG 57.218 29.630 0.00 2.68 0.00 2.82
6431 16506 9.783256 GTTGAACTTTGTTTTACTAGTCAATGT 57.217 29.630 0.00 3.33 32.41 2.71
6432 16507 9.781834 TTGAACTTTGTTTTACTAGTCAATGTG 57.218 29.630 0.00 0.00 31.81 3.21
6433 16508 8.952278 TGAACTTTGTTTTACTAGTCAATGTGT 58.048 29.630 0.00 0.00 31.81 3.72
6436 16511 9.386010 ACTTTGTTTTACTAGTCAATGTGTACA 57.614 29.630 0.00 0.00 30.81 2.90
6439 16514 7.802738 TGTTTTACTAGTCAATGTGTACATGC 58.197 34.615 0.00 0.00 36.56 4.06
6440 16515 7.442666 TGTTTTACTAGTCAATGTGTACATGCA 59.557 33.333 0.00 0.00 36.56 3.96
6441 16516 7.971183 TTTACTAGTCAATGTGTACATGCAA 57.029 32.000 0.00 0.00 36.56 4.08
6442 16517 8.560355 TTTACTAGTCAATGTGTACATGCAAT 57.440 30.769 0.00 0.00 36.56 3.56
6458 16533 6.867799 CATGCAATGCACGTTAATTTAGAA 57.132 33.333 11.23 0.00 43.04 2.10
6459 16534 6.914935 CATGCAATGCACGTTAATTTAGAAG 58.085 36.000 11.23 0.00 43.04 2.85
6460 16535 6.007936 TGCAATGCACGTTAATTTAGAAGT 57.992 33.333 2.72 0.00 31.71 3.01
6461 16536 7.135089 TGCAATGCACGTTAATTTAGAAGTA 57.865 32.000 2.72 0.00 31.71 2.24
6462 16537 7.757526 TGCAATGCACGTTAATTTAGAAGTAT 58.242 30.769 2.72 0.00 31.71 2.12
6463 16538 8.884726 TGCAATGCACGTTAATTTAGAAGTATA 58.115 29.630 2.72 0.00 31.71 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.039624 TGCTCCTCTGACCTCCCC 59.960 66.667 0.00 0.00 0.00 4.81
26 27 1.815866 GCTCTGCTCCTCTGACCTC 59.184 63.158 0.00 0.00 0.00 3.85
27 28 2.051518 CGCTCTGCTCCTCTGACCT 61.052 63.158 0.00 0.00 0.00 3.85
42 49 1.796796 GGCAAAGATTTCTCGCGCT 59.203 52.632 5.56 0.00 0.00 5.92
111 118 2.452813 CGGGTCAAGTCAATCGCCG 61.453 63.158 0.00 0.00 0.00 6.46
145 152 5.106396 ACGACGAGATAAACTATAATCCGGG 60.106 44.000 0.00 0.00 0.00 5.73
147 154 5.283247 GCACGACGAGATAAACTATAATCCG 59.717 44.000 0.00 0.00 0.00 4.18
148 155 5.572126 GGCACGACGAGATAAACTATAATCC 59.428 44.000 0.00 0.00 0.00 3.01
203 210 0.339859 TAGAGTGGAGGGGATGTGCT 59.660 55.000 0.00 0.00 0.00 4.40
206 213 0.716591 TGGTAGAGTGGAGGGGATGT 59.283 55.000 0.00 0.00 0.00 3.06
207 214 1.879575 TTGGTAGAGTGGAGGGGATG 58.120 55.000 0.00 0.00 0.00 3.51
216 223 3.379452 AGGGAAGAGGATTGGTAGAGTG 58.621 50.000 0.00 0.00 0.00 3.51
221 236 1.691482 CGGGAGGGAAGAGGATTGGTA 60.691 57.143 0.00 0.00 0.00 3.25
274 291 0.811616 GATGTGCTTACCCTGCTCCG 60.812 60.000 0.00 0.00 0.00 4.63
275 292 0.464554 GGATGTGCTTACCCTGCTCC 60.465 60.000 0.00 0.00 0.00 4.70
312 330 3.751175 CGCAACAACATCCCCGAATATAT 59.249 43.478 0.00 0.00 0.00 0.86
314 332 1.946768 CGCAACAACATCCCCGAATAT 59.053 47.619 0.00 0.00 0.00 1.28
335 353 3.435026 CCCGGAATTCTCTCTCTCTCTCT 60.435 52.174 0.73 0.00 0.00 3.10
344 366 1.067071 ACGAACACCCGGAATTCTCTC 60.067 52.381 0.73 0.00 0.00 3.20
345 367 0.974383 ACGAACACCCGGAATTCTCT 59.026 50.000 0.73 0.00 0.00 3.10
346 368 1.804601 AACGAACACCCGGAATTCTC 58.195 50.000 0.73 0.00 0.00 2.87
347 369 2.148768 GAAACGAACACCCGGAATTCT 58.851 47.619 0.73 0.00 0.00 2.40
348 370 2.148768 AGAAACGAACACCCGGAATTC 58.851 47.619 0.73 2.28 0.00 2.17
349 371 2.265589 AGAAACGAACACCCGGAATT 57.734 45.000 0.73 0.00 0.00 2.17
405 430 2.422377 GGGATTATACCAACTTGCCGGT 60.422 50.000 1.90 0.00 39.41 5.28
411 436 2.508300 AGGTGCGGGATTATACCAACTT 59.492 45.455 0.00 0.00 35.66 2.66
470 495 3.607987 GAGAATCGCGCACCGTCG 61.608 66.667 8.75 0.00 38.35 5.12
471 496 3.255379 GGAGAATCGCGCACCGTC 61.255 66.667 8.75 0.00 38.35 4.79
478 503 1.949631 GGGCTTACGGAGAATCGCG 60.950 63.158 0.00 0.00 34.37 5.87
480 505 0.870307 CGTGGGCTTACGGAGAATCG 60.870 60.000 6.89 0.00 40.22 3.34
482 507 0.460311 CTCGTGGGCTTACGGAGAAT 59.540 55.000 13.15 0.00 43.85 2.40
491 532 1.528309 CCAAACACCTCGTGGGCTT 60.528 57.895 8.63 0.00 37.94 4.35
589 634 7.383687 TCAGACAACGACCTATCAAAAATACT 58.616 34.615 0.00 0.00 0.00 2.12
626 672 2.813779 GCATCGGGCATATCGAAATC 57.186 50.000 0.00 0.00 43.97 2.17
651 697 1.374947 GGCAACTGCAGTCCCTACA 59.625 57.895 21.95 0.00 44.36 2.74
652 698 0.674895 CTGGCAACTGCAGTCCCTAC 60.675 60.000 27.18 15.44 44.36 3.18
653 699 1.127567 ACTGGCAACTGCAGTCCCTA 61.128 55.000 27.18 16.47 44.36 3.53
654 700 2.403132 GACTGGCAACTGCAGTCCCT 62.403 60.000 27.18 14.77 44.36 4.20
655 701 1.968540 GACTGGCAACTGCAGTCCC 60.969 63.158 21.95 22.59 44.36 4.46
656 702 0.952984 GAGACTGGCAACTGCAGTCC 60.953 60.000 21.95 18.50 43.55 3.85
657 703 0.952984 GGAGACTGGCAACTGCAGTC 60.953 60.000 21.95 18.55 43.21 3.51
658 704 1.072159 GGAGACTGGCAACTGCAGT 59.928 57.895 15.25 15.25 44.36 4.40
663 724 2.026822 CCAATACTGGAGACTGGCAACT 60.027 50.000 0.00 0.00 46.92 3.16
754 819 3.118223 GGAGGGGTGACTTTCTAATCCAG 60.118 52.174 0.00 0.00 0.00 3.86
789 858 8.708742 TCAATTACATGTGAACTTTTAGACGAG 58.291 33.333 9.11 0.00 0.00 4.18
795 864 8.303156 CACCCATCAATTACATGTGAACTTTTA 58.697 33.333 9.11 0.00 0.00 1.52
819 890 3.005684 TGTTTTGGCAGAACATGATCCAC 59.994 43.478 18.50 0.00 32.44 4.02
835 906 8.928733 CATAAATCAAGAAATCCTGGTGTTTTG 58.071 33.333 0.00 0.00 0.00 2.44
877 949 9.769093 GTACTTTTCGCACATAAATCAAGTAAT 57.231 29.630 0.00 0.00 0.00 1.89
880 952 7.197071 TGTACTTTTCGCACATAAATCAAGT 57.803 32.000 0.00 0.00 0.00 3.16
881 953 8.673626 AATGTACTTTTCGCACATAAATCAAG 57.326 30.769 0.00 0.00 32.70 3.02
908 980 9.982291 GATAGTTTTCGCACATAAATCAAGTAA 57.018 29.630 0.00 0.00 0.00 2.24
910 982 8.268850 AGATAGTTTTCGCACATAAATCAAGT 57.731 30.769 0.00 0.00 0.00 3.16
914 986 9.638300 CAACTAGATAGTTTTCGCACATAAATC 57.362 33.333 2.47 0.00 43.57 2.17
915 987 9.162764 ACAACTAGATAGTTTTCGCACATAAAT 57.837 29.630 2.47 0.00 43.57 1.40
916 988 8.440059 CACAACTAGATAGTTTTCGCACATAAA 58.560 33.333 2.47 0.00 43.57 1.40
917 989 7.601130 ACACAACTAGATAGTTTTCGCACATAA 59.399 33.333 2.47 0.00 43.57 1.90
918 990 7.094631 ACACAACTAGATAGTTTTCGCACATA 58.905 34.615 2.47 0.00 43.57 2.29
919 991 5.932303 ACACAACTAGATAGTTTTCGCACAT 59.068 36.000 2.47 0.00 43.57 3.21
920 992 5.294356 ACACAACTAGATAGTTTTCGCACA 58.706 37.500 2.47 0.00 43.57 4.57
921 993 5.840940 ACACAACTAGATAGTTTTCGCAC 57.159 39.130 2.47 0.00 43.57 5.34
922 994 6.364165 GTGTACACAACTAGATAGTTTTCGCA 59.636 38.462 21.14 0.00 43.57 5.10
923 995 6.364165 TGTGTACACAACTAGATAGTTTTCGC 59.636 38.462 26.07 0.00 43.57 4.70
924 996 7.862741 TGTGTACACAACTAGATAGTTTTCG 57.137 36.000 26.07 0.00 43.57 3.46
925 997 9.257651 ACTTGTGTACACAACTAGATAGTTTTC 57.742 33.333 32.37 0.00 45.42 2.29
927 999 9.688592 GTACTTGTGTACACAACTAGATAGTTT 57.311 33.333 32.37 12.11 45.42 2.66
957 1029 7.979786 ACTTCCTGGTGAATAGAAGAGAATA 57.020 36.000 5.67 0.00 38.38 1.75
968 1047 5.765182 CACTTAGTTGAACTTCCTGGTGAAT 59.235 40.000 1.97 0.00 31.06 2.57
985 1064 2.619074 GCCCCATTTCTCAGCACTTAGT 60.619 50.000 0.00 0.00 0.00 2.24
987 1066 1.354031 TGCCCCATTTCTCAGCACTTA 59.646 47.619 0.00 0.00 0.00 2.24
988 1067 0.112995 TGCCCCATTTCTCAGCACTT 59.887 50.000 0.00 0.00 0.00 3.16
993 1072 2.232208 GTCCTTTTGCCCCATTTCTCAG 59.768 50.000 0.00 0.00 0.00 3.35
998 1077 1.132881 TGGAGTCCTTTTGCCCCATTT 60.133 47.619 11.33 0.00 0.00 2.32
1037 1116 4.512944 CGTTGGATGAATTCCCATAGTCAG 59.487 45.833 2.27 0.00 44.77 3.51
1038 1117 4.450976 CGTTGGATGAATTCCCATAGTCA 58.549 43.478 2.27 0.00 44.77 3.41
1039 1118 3.815401 CCGTTGGATGAATTCCCATAGTC 59.185 47.826 2.27 0.00 44.77 2.59
1040 1119 3.435026 CCCGTTGGATGAATTCCCATAGT 60.435 47.826 2.27 0.00 44.77 2.12
1041 1120 3.149196 CCCGTTGGATGAATTCCCATAG 58.851 50.000 2.27 1.81 44.77 2.23
1042 1121 2.512056 ACCCGTTGGATGAATTCCCATA 59.488 45.455 2.27 0.00 44.77 2.74
1043 1122 1.287739 ACCCGTTGGATGAATTCCCAT 59.712 47.619 2.27 0.00 44.77 4.00
1044 1123 0.701731 ACCCGTTGGATGAATTCCCA 59.298 50.000 2.27 0.84 44.77 4.37
1045 1124 2.721425 TACCCGTTGGATGAATTCCC 57.279 50.000 2.27 0.00 44.77 3.97
1085 1164 2.602676 GGGCTGTAACTGGAGGGCA 61.603 63.158 0.00 0.00 0.00 5.36
1152 1231 2.932194 TTCCTCTGCAGCCTGGCT 60.932 61.111 17.22 17.22 40.77 4.75
1238 1317 3.958147 TGGGAAAGGAAAACAAGAGAACC 59.042 43.478 0.00 0.00 0.00 3.62
1402 1481 6.963049 TTCTCGAACAGAATACTTAAAGCC 57.037 37.500 0.00 0.00 36.08 4.35
1418 1497 8.864069 TGCAAACTTTATTTTGATTTCTCGAA 57.136 26.923 0.00 0.00 38.54 3.71
1493 1573 6.376581 TGGCTTGAAATTTTTGAAATGGTTGT 59.623 30.769 0.00 0.00 0.00 3.32
1503 1583 3.204526 TGCAGGTGGCTTGAAATTTTTG 58.795 40.909 0.00 0.00 45.15 2.44
1509 1589 3.831333 TGATTAATGCAGGTGGCTTGAAA 59.169 39.130 0.00 0.00 45.15 2.69
1556 1636 4.101114 ACAAGACTGTATGTATGTCCCCA 58.899 43.478 0.00 0.00 32.54 4.96
1568 1648 9.151471 GCAAATTATACAAGAGACAAGACTGTA 57.849 33.333 0.00 0.00 35.30 2.74
1569 1649 7.661437 TGCAAATTATACAAGAGACAAGACTGT 59.339 33.333 0.00 0.00 38.98 3.55
1571 1651 7.148573 CGTGCAAATTATACAAGAGACAAGACT 60.149 37.037 0.00 0.00 0.00 3.24
1572 1652 6.955963 CGTGCAAATTATACAAGAGACAAGAC 59.044 38.462 0.00 0.00 0.00 3.01
1573 1653 6.649141 ACGTGCAAATTATACAAGAGACAAGA 59.351 34.615 0.00 0.00 0.00 3.02
1574 1654 6.831769 ACGTGCAAATTATACAAGAGACAAG 58.168 36.000 0.00 0.00 0.00 3.16
1575 1655 6.795098 ACGTGCAAATTATACAAGAGACAA 57.205 33.333 0.00 0.00 0.00 3.18
1576 1656 8.487313 AATACGTGCAAATTATACAAGAGACA 57.513 30.769 0.00 0.00 0.00 3.41
1577 1657 9.769093 AAAATACGTGCAAATTATACAAGAGAC 57.231 29.630 0.00 0.00 0.00 3.36
1621 1701 3.198635 TGTAGAAGAAGAAGGCCCATGAG 59.801 47.826 0.00 0.00 0.00 2.90
1667 1747 3.728864 CGTTGACCATTCAGTGCATTAGC 60.729 47.826 0.00 0.00 35.41 3.09
1670 1750 1.541147 CCGTTGACCATTCAGTGCATT 59.459 47.619 0.00 0.00 31.71 3.56
1672 1752 0.179032 ACCGTTGACCATTCAGTGCA 60.179 50.000 0.00 0.00 31.71 4.57
1673 1753 0.517316 GACCGTTGACCATTCAGTGC 59.483 55.000 0.00 0.00 31.71 4.40
1674 1754 1.156736 GGACCGTTGACCATTCAGTG 58.843 55.000 0.00 0.00 31.71 3.66
1675 1755 1.056660 AGGACCGTTGACCATTCAGT 58.943 50.000 0.00 0.00 31.71 3.41
1676 1756 3.000727 GTTAGGACCGTTGACCATTCAG 58.999 50.000 0.00 0.00 31.71 3.02
1677 1757 2.369203 TGTTAGGACCGTTGACCATTCA 59.631 45.455 0.00 0.00 0.00 2.57
1678 1758 2.740447 GTGTTAGGACCGTTGACCATTC 59.260 50.000 0.00 0.00 0.00 2.67
1679 1759 2.551504 GGTGTTAGGACCGTTGACCATT 60.552 50.000 0.00 0.00 0.00 3.16
1680 1760 1.002773 GGTGTTAGGACCGTTGACCAT 59.997 52.381 0.00 0.00 0.00 3.55
1681 1761 0.393820 GGTGTTAGGACCGTTGACCA 59.606 55.000 0.00 0.00 0.00 4.02
1682 1762 0.683412 AGGTGTTAGGACCGTTGACC 59.317 55.000 0.00 0.00 41.35 4.02
1683 1763 2.560105 ACTAGGTGTTAGGACCGTTGAC 59.440 50.000 0.00 0.00 41.35 3.18
1684 1764 2.880443 ACTAGGTGTTAGGACCGTTGA 58.120 47.619 0.00 0.00 41.35 3.18
1685 1765 3.006110 TGAACTAGGTGTTAGGACCGTTG 59.994 47.826 0.00 0.00 41.35 4.10
1686 1766 3.233507 TGAACTAGGTGTTAGGACCGTT 58.766 45.455 0.00 0.00 41.35 4.44
1687 1767 2.880443 TGAACTAGGTGTTAGGACCGT 58.120 47.619 0.00 0.00 41.35 4.83
1688 1768 3.947910 TTGAACTAGGTGTTAGGACCG 57.052 47.619 0.00 0.00 41.35 4.79
1689 1769 7.562135 TCATATTTGAACTAGGTGTTAGGACC 58.438 38.462 0.00 0.00 39.30 4.46
1690 1770 8.475639 TCTCATATTTGAACTAGGTGTTAGGAC 58.524 37.037 0.00 0.00 39.30 3.85
1691 1771 8.603898 TCTCATATTTGAACTAGGTGTTAGGA 57.396 34.615 0.00 0.00 39.30 2.94
1692 1772 9.319143 CTTCTCATATTTGAACTAGGTGTTAGG 57.681 37.037 0.00 0.00 39.30 2.69
1693 1773 8.821894 GCTTCTCATATTTGAACTAGGTGTTAG 58.178 37.037 0.00 0.00 39.30 2.34
1694 1774 8.540388 AGCTTCTCATATTTGAACTAGGTGTTA 58.460 33.333 0.00 0.00 39.30 2.41
1695 1775 7.335422 CAGCTTCTCATATTTGAACTAGGTGTT 59.665 37.037 0.00 0.00 42.38 3.32
1696 1776 6.820656 CAGCTTCTCATATTTGAACTAGGTGT 59.179 38.462 0.00 0.00 32.78 4.16
1697 1777 6.820656 ACAGCTTCTCATATTTGAACTAGGTG 59.179 38.462 13.98 13.98 37.70 4.00
1698 1778 6.951971 ACAGCTTCTCATATTTGAACTAGGT 58.048 36.000 0.00 0.00 0.00 3.08
1699 1779 7.981789 TGTACAGCTTCTCATATTTGAACTAGG 59.018 37.037 0.00 0.00 0.00 3.02
1700 1780 8.932945 TGTACAGCTTCTCATATTTGAACTAG 57.067 34.615 0.00 0.00 0.00 2.57
1701 1781 9.890629 ATTGTACAGCTTCTCATATTTGAACTA 57.109 29.630 0.00 0.00 0.00 2.24
1702 1782 8.798859 ATTGTACAGCTTCTCATATTTGAACT 57.201 30.769 0.00 0.00 0.00 3.01
1704 1784 9.890629 ACTATTGTACAGCTTCTCATATTTGAA 57.109 29.630 0.00 0.00 0.00 2.69
1705 1785 9.317936 CACTATTGTACAGCTTCTCATATTTGA 57.682 33.333 0.00 0.00 0.00 2.69
1832 1912 9.258826 CCTAAGATTGATAGAATGTCAGACAAG 57.741 37.037 7.50 0.00 0.00 3.16
1915 1995 9.131791 AGAAGTAAAATCTAACTGCAGGAAAAA 57.868 29.630 19.93 0.00 0.00 1.94
1988 2068 6.220726 AGGTTTTTACTGAAAATGCACTGT 57.779 33.333 0.00 0.00 39.29 3.55
2053 2133 8.621286 GGACTACCCATTTAGTTGATTGTTATG 58.379 37.037 0.00 0.00 32.17 1.90
2134 2551 6.721668 AGTATACTACTGCAGCTCCATATCAA 59.278 38.462 15.27 0.00 37.69 2.57
2230 2648 0.610174 CTGGGCTGCAGTACTTGAGA 59.390 55.000 16.64 0.00 0.00 3.27
2241 2659 1.339055 TGTAACTGTCATCTGGGCTGC 60.339 52.381 0.00 0.00 0.00 5.25
2282 2700 6.142817 AGTTCACAACACAATAATCGAAAGC 58.857 36.000 0.00 0.00 0.00 3.51
2292 2710 9.139174 CTTTCAGTTTTAAGTTCACAACACAAT 57.861 29.630 0.00 0.00 0.00 2.71
2373 2791 8.806429 TGCCTACAATAAGATTTGAAGATTCA 57.194 30.769 0.00 0.00 34.92 2.57
2480 2898 1.899142 GGACCCCAAAGCAAGCATTAA 59.101 47.619 0.00 0.00 0.00 1.40
2505 2923 9.798994 CAGTACCTACTAATAAATAATAGGCGG 57.201 37.037 0.00 0.00 36.63 6.13
2506 2924 9.298774 GCAGTACCTACTAATAAATAATAGGCG 57.701 37.037 0.00 0.00 36.63 5.52
2522 2940 9.777297 ACTAGTATTCTACTAAGCAGTACCTAC 57.223 37.037 0.00 0.00 40.49 3.18
2560 2983 7.298507 TCAATAGCAATAAACCACGAACTAC 57.701 36.000 0.00 0.00 0.00 2.73
2566 2997 7.061789 GGTTTTCTTCAATAGCAATAAACCACG 59.938 37.037 0.00 0.00 36.77 4.94
2626 3057 9.261180 TCGCCTGACAAAAGATTTATAATAGAG 57.739 33.333 0.00 0.00 0.00 2.43
2712 3143 9.027202 GGGGGTATTCTTTCTACAAATACAAAA 57.973 33.333 6.76 0.00 37.52 2.44
2749 3180 3.732849 CAACAGGGGAGGGGAGGC 61.733 72.222 0.00 0.00 0.00 4.70
2750 3181 3.732849 GCAACAGGGGAGGGGAGG 61.733 72.222 0.00 0.00 0.00 4.30
2751 3182 2.276309 GATGCAACAGGGGAGGGGAG 62.276 65.000 0.00 0.00 0.00 4.30
2752 3183 2.204291 ATGCAACAGGGGAGGGGA 60.204 61.111 0.00 0.00 0.00 4.81
2753 3184 1.867595 AAGATGCAACAGGGGAGGGG 61.868 60.000 0.00 0.00 0.00 4.79
2754 3185 0.918983 TAAGATGCAACAGGGGAGGG 59.081 55.000 0.00 0.00 0.00 4.30
2755 3186 4.042062 TCATATAAGATGCAACAGGGGAGG 59.958 45.833 0.00 0.00 0.00 4.30
2756 3187 5.233083 TCATATAAGATGCAACAGGGGAG 57.767 43.478 0.00 0.00 0.00 4.30
2757 3188 5.848286 ATCATATAAGATGCAACAGGGGA 57.152 39.130 0.00 0.00 0.00 4.81
2879 3476 0.247460 GAGGCAAGGGTTTGGAATGC 59.753 55.000 0.00 0.00 34.79 3.56
3136 3743 7.388500 ACATTTCATTGAAAATCCATGGTCAAC 59.612 33.333 15.57 5.09 35.11 3.18
3508 4713 8.593492 TTATCAGAAGAACATGATATTGACCG 57.407 34.615 0.00 0.00 38.02 4.79
3936 5159 1.369625 AATTGTCGAATGACCGAGCC 58.630 50.000 0.00 0.00 44.86 4.70
3983 5206 4.051237 CCAGAAAAACAGCTAAAGGTTGC 58.949 43.478 0.00 0.00 0.00 4.17
4114 5337 4.100498 GGGATTTCCATCAATGCTGACAAT 59.900 41.667 0.00 0.00 37.91 2.71
4256 5479 4.248859 CAGAGGAAGAATCGAAGAAAGCA 58.751 43.478 0.00 0.00 43.58 3.91
4338 5561 6.979238 GTCAAAGCTAGTAGACCGTGAATAAT 59.021 38.462 0.00 0.00 0.00 1.28
4432 5655 2.556257 TGCTGTCGCTGTTTGAAACTA 58.444 42.857 9.69 0.00 36.97 2.24
4486 5709 1.165907 CCGCAGGCTGTGAACTTTCA 61.166 55.000 28.65 0.00 46.14 2.69
4570 5793 3.055963 TGGTCGGAATACGGTGTAAACAT 60.056 43.478 0.00 0.00 44.45 2.71
4634 5858 6.484818 TTTGGCGGTGTAGATAAAGTTAAC 57.515 37.500 0.00 0.00 0.00 2.01
4730 5955 7.201461 GCATTGTGCATTTTCACCTAATAGTTG 60.201 37.037 0.00 0.00 44.26 3.16
4912 6211 0.037326 ATTCCGTGACGATGTGCTGT 60.037 50.000 6.54 0.00 0.00 4.40
4938 6237 7.125391 AGTTCAGGGGCATATCTAATGAAAAA 58.875 34.615 0.00 0.00 0.00 1.94
4947 6246 3.941629 TCCTAAGTTCAGGGGCATATCT 58.058 45.455 0.00 0.00 36.26 1.98
4965 6603 6.595716 GCAGTGTTGTCTGAAATAGTATTCCT 59.404 38.462 0.00 0.00 37.61 3.36
5045 6692 6.147821 ACGATCTACAGTCCACATTTGAAAAG 59.852 38.462 0.00 0.00 0.00 2.27
5057 6709 4.167268 GTTGTCTGAACGATCTACAGTCC 58.833 47.826 0.00 0.00 33.93 3.85
5066 6718 6.688578 AGTACAATAGTGTTGTCTGAACGAT 58.311 36.000 8.69 0.00 39.30 3.73
5068 6720 6.764877 AAGTACAATAGTGTTGTCTGAACG 57.235 37.500 8.69 0.00 39.30 3.95
5070 6722 7.766738 TGTCAAAGTACAATAGTGTTGTCTGAA 59.233 33.333 8.69 0.00 39.30 3.02
5071 6723 7.223971 GTGTCAAAGTACAATAGTGTTGTCTGA 59.776 37.037 8.69 5.77 39.30 3.27
5072 6724 7.011016 TGTGTCAAAGTACAATAGTGTTGTCTG 59.989 37.037 8.69 3.68 39.30 3.51
5073 6725 7.045416 TGTGTCAAAGTACAATAGTGTTGTCT 58.955 34.615 8.69 4.08 39.30 3.41
5074 6726 7.241663 TGTGTCAAAGTACAATAGTGTTGTC 57.758 36.000 8.69 1.90 39.30 3.18
5075 6727 7.801716 ATGTGTCAAAGTACAATAGTGTTGT 57.198 32.000 10.31 10.31 39.30 3.32
5076 6728 8.769891 TGTATGTGTCAAAGTACAATAGTGTTG 58.230 33.333 0.00 0.00 39.30 3.33
5077 6729 8.770828 GTGTATGTGTCAAAGTACAATAGTGTT 58.229 33.333 0.00 0.00 39.30 3.32
5078 6730 8.148351 AGTGTATGTGTCAAAGTACAATAGTGT 58.852 33.333 0.00 0.00 42.09 3.55
5079 6731 8.534333 AGTGTATGTGTCAAAGTACAATAGTG 57.466 34.615 0.00 0.00 0.00 2.74
5080 6732 8.988934 CAAGTGTATGTGTCAAAGTACAATAGT 58.011 33.333 0.00 0.00 0.00 2.12
5124 6776 3.243434 GCATTCGGAAGAGGAACGATCTA 60.243 47.826 0.00 0.00 43.69 1.98
5174 6867 0.252467 AGAGGGTCTGGCAGTTAGCT 60.252 55.000 15.27 4.28 44.79 3.32
5200 6893 5.454755 GCCAGGCTTAGTTCATATTCCACTA 60.455 44.000 3.29 0.00 0.00 2.74
5460 7162 6.039047 GCATCAGGAGATCAGCTTTTAATCAA 59.961 38.462 0.00 0.00 30.20 2.57
5671 7397 2.695147 AGCCCTTTTGGAACACAGAAAG 59.305 45.455 0.00 0.00 44.07 2.62
5696 7422 1.089920 CAGTGCCTTGTATGGACAGC 58.910 55.000 0.00 0.00 36.76 4.40
5788 7514 7.010160 TCCTAGTTGGTTCATCCTGAATTTTT 58.990 34.615 0.00 0.00 38.79 1.94
5792 7518 5.488919 TCTTCCTAGTTGGTTCATCCTGAAT 59.511 40.000 0.00 0.00 38.79 2.57
5924 15714 4.889409 TGGTTCATCCTCAAATATTCAGGC 59.111 41.667 8.11 0.00 37.07 4.85
5927 15717 8.592529 TTGATTGGTTCATCCTCAAATATTCA 57.407 30.769 0.00 0.00 37.07 2.57
5994 16042 6.254281 ACGCTTTTATATGTTTGAGCTTGT 57.746 33.333 0.00 0.00 0.00 3.16
6022 16073 5.423015 ACTGCTGGTATATGAAAGTGTGAG 58.577 41.667 0.00 0.00 0.00 3.51
6041 16105 9.649167 TTACTCTTATTTAACCAGAACTACTGC 57.351 33.333 0.00 0.00 44.52 4.40
6068 16132 9.381033 CATGTACTTCAATTCTCTCTCTCAAAT 57.619 33.333 0.00 0.00 0.00 2.32
6093 16159 7.621285 AGATATATATGCTCTTCCTTGCTACCA 59.379 37.037 0.00 0.00 0.00 3.25
6099 16165 7.254829 GCATGCAGATATATATGCTCTTCCTTG 60.255 40.741 27.51 15.89 44.77 3.61
6185 16260 2.914278 TCCAAATCTTTCCCGGACCTAA 59.086 45.455 0.73 0.00 0.00 2.69
6198 16273 7.928706 CGACTTTCATAGGAGTAATCCAAATCT 59.071 37.037 12.54 0.00 0.00 2.40
6199 16274 7.171678 CCGACTTTCATAGGAGTAATCCAAATC 59.828 40.741 12.54 0.00 0.00 2.17
6200 16275 6.992715 CCGACTTTCATAGGAGTAATCCAAAT 59.007 38.462 12.54 1.51 0.00 2.32
6201 16276 6.070424 ACCGACTTTCATAGGAGTAATCCAAA 60.070 38.462 12.54 2.27 0.00 3.28
6202 16277 5.424252 ACCGACTTTCATAGGAGTAATCCAA 59.576 40.000 12.54 0.00 0.00 3.53
6203 16278 4.960469 ACCGACTTTCATAGGAGTAATCCA 59.040 41.667 12.54 0.00 0.00 3.41
6204 16279 5.290386 CACCGACTTTCATAGGAGTAATCC 58.710 45.833 0.00 0.00 0.00 3.01
6205 16280 4.745620 GCACCGACTTTCATAGGAGTAATC 59.254 45.833 0.00 0.00 0.00 1.75
6206 16281 4.161565 TGCACCGACTTTCATAGGAGTAAT 59.838 41.667 0.00 0.00 0.00 1.89
6207 16282 3.512329 TGCACCGACTTTCATAGGAGTAA 59.488 43.478 0.00 0.00 0.00 2.24
6208 16283 3.093814 TGCACCGACTTTCATAGGAGTA 58.906 45.455 0.00 0.00 0.00 2.59
6209 16284 1.899814 TGCACCGACTTTCATAGGAGT 59.100 47.619 0.00 0.00 0.00 3.85
6210 16285 2.672961 TGCACCGACTTTCATAGGAG 57.327 50.000 0.00 0.00 0.00 3.69
6211 16286 2.614481 GGTTGCACCGACTTTCATAGGA 60.614 50.000 0.00 0.00 0.00 2.94
6212 16287 1.737793 GGTTGCACCGACTTTCATAGG 59.262 52.381 0.00 0.00 0.00 2.57
6213 16288 2.159627 GTGGTTGCACCGACTTTCATAG 59.840 50.000 0.00 0.00 42.58 2.23
6214 16289 2.147958 GTGGTTGCACCGACTTTCATA 58.852 47.619 0.00 0.00 42.58 2.15
6215 16290 0.951558 GTGGTTGCACCGACTTTCAT 59.048 50.000 0.00 0.00 42.58 2.57
6216 16291 0.107410 AGTGGTTGCACCGACTTTCA 60.107 50.000 0.00 0.00 42.58 2.69
6217 16292 0.307760 CAGTGGTTGCACCGACTTTC 59.692 55.000 0.00 0.00 42.58 2.62
6218 16293 0.107410 TCAGTGGTTGCACCGACTTT 60.107 50.000 0.00 0.00 42.58 2.66
6219 16294 0.107410 TTCAGTGGTTGCACCGACTT 60.107 50.000 0.00 0.00 42.58 3.01
6220 16295 0.814010 GTTCAGTGGTTGCACCGACT 60.814 55.000 0.00 0.00 42.58 4.18
6221 16296 1.647084 GTTCAGTGGTTGCACCGAC 59.353 57.895 0.00 0.00 42.58 4.79
6222 16297 1.525077 GGTTCAGTGGTTGCACCGA 60.525 57.895 0.00 0.00 42.58 4.69
6223 16298 1.821759 TGGTTCAGTGGTTGCACCG 60.822 57.895 0.00 0.00 44.97 4.94
6224 16299 1.034838 TGTGGTTCAGTGGTTGCACC 61.035 55.000 0.00 0.00 42.68 5.01
6225 16300 1.032014 ATGTGGTTCAGTGGTTGCAC 58.968 50.000 0.00 0.00 0.00 4.57
6226 16301 2.105649 TCTATGTGGTTCAGTGGTTGCA 59.894 45.455 0.00 0.00 0.00 4.08
6227 16302 2.778299 TCTATGTGGTTCAGTGGTTGC 58.222 47.619 0.00 0.00 0.00 4.17
6228 16303 3.753272 CCTTCTATGTGGTTCAGTGGTTG 59.247 47.826 0.00 0.00 0.00 3.77
6229 16304 3.244911 CCCTTCTATGTGGTTCAGTGGTT 60.245 47.826 0.00 0.00 0.00 3.67
6230 16305 2.305927 CCCTTCTATGTGGTTCAGTGGT 59.694 50.000 0.00 0.00 0.00 4.16
6231 16306 2.571653 TCCCTTCTATGTGGTTCAGTGG 59.428 50.000 0.00 0.00 0.00 4.00
6232 16307 3.261897 ACTCCCTTCTATGTGGTTCAGTG 59.738 47.826 0.00 0.00 0.00 3.66
6233 16308 3.521727 ACTCCCTTCTATGTGGTTCAGT 58.478 45.455 0.00 0.00 0.00 3.41
6234 16309 4.141914 GGTACTCCCTTCTATGTGGTTCAG 60.142 50.000 0.00 0.00 0.00 3.02
6235 16310 3.773119 GGTACTCCCTTCTATGTGGTTCA 59.227 47.826 0.00 0.00 0.00 3.18
6236 16311 3.773119 TGGTACTCCCTTCTATGTGGTTC 59.227 47.826 0.00 0.00 0.00 3.62
6237 16312 3.518303 GTGGTACTCCCTTCTATGTGGTT 59.482 47.826 0.00 0.00 0.00 3.67
6238 16313 3.105283 GTGGTACTCCCTTCTATGTGGT 58.895 50.000 0.00 0.00 0.00 4.16
6239 16314 3.104512 TGTGGTACTCCCTTCTATGTGG 58.895 50.000 0.00 0.00 0.00 4.17
6240 16315 5.362717 TGTATGTGGTACTCCCTTCTATGTG 59.637 44.000 0.00 0.00 34.27 3.21
6241 16316 5.525484 TGTATGTGGTACTCCCTTCTATGT 58.475 41.667 0.00 0.00 34.27 2.29
6242 16317 6.127168 TGTTGTATGTGGTACTCCCTTCTATG 60.127 42.308 0.00 0.00 34.27 2.23
6243 16318 5.962031 TGTTGTATGTGGTACTCCCTTCTAT 59.038 40.000 0.00 0.00 34.27 1.98
6244 16319 5.186409 GTGTTGTATGTGGTACTCCCTTCTA 59.814 44.000 0.00 0.00 34.27 2.10
6245 16320 4.020485 GTGTTGTATGTGGTACTCCCTTCT 60.020 45.833 0.00 0.00 34.27 2.85
6246 16321 4.020485 AGTGTTGTATGTGGTACTCCCTTC 60.020 45.833 0.00 0.00 34.27 3.46
6247 16322 3.908103 AGTGTTGTATGTGGTACTCCCTT 59.092 43.478 0.00 0.00 34.27 3.95
6248 16323 3.517612 AGTGTTGTATGTGGTACTCCCT 58.482 45.455 0.00 0.00 34.27 4.20
6249 16324 3.975168 AGTGTTGTATGTGGTACTCCC 57.025 47.619 0.00 0.00 34.27 4.30
6250 16325 5.548406 AGAAAGTGTTGTATGTGGTACTCC 58.452 41.667 0.00 0.00 34.27 3.85
6251 16326 6.704493 TGAAGAAAGTGTTGTATGTGGTACTC 59.296 38.462 0.00 0.00 34.27 2.59
6252 16327 6.588204 TGAAGAAAGTGTTGTATGTGGTACT 58.412 36.000 0.00 0.00 34.27 2.73
6253 16328 6.854496 TGAAGAAAGTGTTGTATGTGGTAC 57.146 37.500 0.00 0.00 0.00 3.34
6254 16329 7.490962 CTTGAAGAAAGTGTTGTATGTGGTA 57.509 36.000 0.00 0.00 0.00 3.25
6255 16330 6.377327 CTTGAAGAAAGTGTTGTATGTGGT 57.623 37.500 0.00 0.00 0.00 4.16
6294 16369 3.953766 TCTTCGTGAGTATTCGCATCTC 58.046 45.455 0.00 0.00 33.34 2.75
6296 16371 4.541779 AGATCTTCGTGAGTATTCGCATC 58.458 43.478 0.00 0.00 33.34 3.91
6310 16385 9.695526 ATGAGATCTCTTATTTGAAGATCTTCG 57.304 33.333 26.32 13.60 43.73 3.79
6324 16399 4.141367 ACCACTCCTCGATGAGATCTCTTA 60.141 45.833 22.48 4.70 36.22 2.10
6372 16447 6.213600 ACATGAAACATAGAGGTGGAACTAGT 59.786 38.462 0.00 0.00 36.74 2.57
6373 16448 6.644347 ACATGAAACATAGAGGTGGAACTAG 58.356 40.000 0.00 0.00 36.74 2.57
6374 16449 6.212589 TGACATGAAACATAGAGGTGGAACTA 59.787 38.462 0.00 0.00 36.74 2.24
6375 16450 5.013079 TGACATGAAACATAGAGGTGGAACT 59.987 40.000 0.00 0.00 36.74 3.01
6376 16451 5.245531 TGACATGAAACATAGAGGTGGAAC 58.754 41.667 0.00 0.00 0.00 3.62
6377 16452 5.497464 TGACATGAAACATAGAGGTGGAA 57.503 39.130 0.00 0.00 0.00 3.53
6378 16453 5.045651 ACATGACATGAAACATAGAGGTGGA 60.046 40.000 22.19 0.00 0.00 4.02
6379 16454 5.065602 CACATGACATGAAACATAGAGGTGG 59.934 44.000 22.19 0.00 0.00 4.61
6380 16455 5.645067 ACACATGACATGAAACATAGAGGTG 59.355 40.000 22.19 7.46 0.00 4.00
6385 16460 6.901265 TCAACACACATGACATGAAACATAG 58.099 36.000 22.19 6.32 0.00 2.23
6404 16479 9.781834 CATTGACTAGTAAAACAAAGTTCAACA 57.218 29.630 0.00 0.00 0.00 3.33
6417 16492 7.971183 TTGCATGTACACATTGACTAGTAAA 57.029 32.000 0.00 0.00 33.61 2.01
6421 16496 5.163733 TGCATTGCATGTACACATTGACTAG 60.164 40.000 7.38 0.00 33.61 2.57
6422 16497 4.699257 TGCATTGCATGTACACATTGACTA 59.301 37.500 7.38 0.00 33.61 2.59
6423 16498 3.506844 TGCATTGCATGTACACATTGACT 59.493 39.130 7.38 0.00 33.61 3.41
6424 16499 3.609373 GTGCATTGCATGTACACATTGAC 59.391 43.478 15.49 0.00 44.02 3.18
6425 16500 3.670091 CGTGCATTGCATGTACACATTGA 60.670 43.478 20.40 0.00 44.70 2.57
6426 16501 2.595095 CGTGCATTGCATGTACACATTG 59.405 45.455 20.40 0.94 44.70 2.82
6427 16502 2.866198 CGTGCATTGCATGTACACATT 58.134 42.857 20.40 0.00 44.70 2.71
6428 16503 2.547913 CGTGCATTGCATGTACACAT 57.452 45.000 20.40 0.00 44.70 3.21
6436 16511 6.620678 ACTTCTAAATTAACGTGCATTGCAT 58.379 32.000 15.49 1.17 41.91 3.96
6437 16512 6.007936 ACTTCTAAATTAACGTGCATTGCA 57.992 33.333 7.38 7.38 35.60 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.