Multiple sequence alignment - TraesCS7B01G282900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G282900 chr7B 100.000 3000 0 0 1541 4540 517307368 517310367 0.000000e+00 5541.0
1 TraesCS7B01G282900 chr7B 100.000 1159 0 0 1 1159 517305828 517306986 0.000000e+00 2141.0
2 TraesCS7B01G282900 chr7B 100.000 35 0 0 4089 4123 517309882 517309916 1.050000e-06 65.8
3 TraesCS7B01G282900 chr7B 100.000 35 0 0 4055 4089 517309916 517309950 1.050000e-06 65.8
4 TraesCS7B01G282900 chr7D 92.454 2624 107 24 1541 4089 488779424 488782031 0.000000e+00 3664.0
5 TraesCS7B01G282900 chr7D 91.880 468 15 9 4089 4540 488781997 488782457 2.300000e-177 632.0
6 TraesCS7B01G282900 chr7D 83.525 522 75 10 6 522 427006135 427006650 1.140000e-130 477.0
7 TraesCS7B01G282900 chr7D 98.565 209 2 1 952 1159 488779147 488779355 7.180000e-98 368.0
8 TraesCS7B01G282900 chr7D 81.070 243 40 5 527 768 473388830 473388593 6.000000e-44 189.0
9 TraesCS7B01G282900 chr7A 90.702 2420 114 28 1541 3864 556156267 556158671 0.000000e+00 3120.0
10 TraesCS7B01G282900 chr7A 88.710 310 11 6 874 1159 556155889 556156198 1.550000e-94 357.0
11 TraesCS7B01G282900 chr7A 88.487 304 12 12 4253 4540 556159064 556159360 3.360000e-91 346.0
12 TraesCS7B01G282900 chr1D 82.741 394 60 8 1 391 92418913 92419301 1.210000e-90 344.0
13 TraesCS7B01G282900 chr1D 83.200 375 57 6 19 391 494255367 494254997 5.630000e-89 339.0
14 TraesCS7B01G282900 chr3D 82.732 388 61 6 6 391 24004729 24005112 1.560000e-89 340.0
15 TraesCS7B01G282900 chr3B 82.564 390 59 9 6 391 399246857 399246473 7.280000e-88 335.0
16 TraesCS7B01G282900 chr5D 81.472 394 65 8 1 391 162462397 162462009 2.640000e-82 316.0
17 TraesCS7B01G282900 chr5D 82.591 247 37 5 523 768 63443924 63444165 3.560000e-51 213.0
18 TraesCS7B01G282900 chr2D 81.443 388 66 6 6 391 387286629 387287012 3.410000e-81 313.0
19 TraesCS7B01G282900 chr2D 80.066 301 50 8 523 818 36010676 36010381 9.890000e-52 215.0
20 TraesCS7B01G282900 chr4D 81.818 374 64 4 19 391 83639656 83640026 1.230000e-80 311.0
21 TraesCS7B01G282900 chr6A 81.234 389 64 8 6 391 376075267 376074885 5.710000e-79 305.0
22 TraesCS7B01G282900 chrUn 93.373 166 11 0 3864 4029 237318537 237318372 3.510000e-61 246.0
23 TraesCS7B01G282900 chrUn 91.111 180 14 2 3851 4029 245704220 245704042 4.540000e-60 243.0
24 TraesCS7B01G282900 chrUn 91.954 174 12 2 3851 4023 348898998 348899170 4.540000e-60 243.0
25 TraesCS7B01G282900 chrUn 91.954 174 12 2 3851 4023 448431959 448432131 4.540000e-60 243.0
26 TraesCS7B01G282900 chr1A 93.373 166 11 0 3864 4029 64425 64260 3.510000e-61 246.0
27 TraesCS7B01G282900 chr1A 93.373 166 11 0 3864 4029 67496 67331 3.510000e-61 246.0
28 TraesCS7B01G282900 chr6B 91.379 174 13 2 3851 4023 111694163 111694335 2.110000e-58 237.0
29 TraesCS7B01G282900 chr5A 91.379 174 13 2 3851 4023 706866747 706866919 2.110000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G282900 chr7B 517305828 517310367 4539 False 1953.400000 5541 100.000000 1 4540 4 chr7B.!!$F1 4539
1 TraesCS7B01G282900 chr7D 488779147 488782457 3310 False 1554.666667 3664 94.299667 952 4540 3 chr7D.!!$F2 3588
2 TraesCS7B01G282900 chr7D 427006135 427006650 515 False 477.000000 477 83.525000 6 522 1 chr7D.!!$F1 516
3 TraesCS7B01G282900 chr7A 556155889 556159360 3471 False 1274.333333 3120 89.299667 874 4540 3 chr7A.!!$F1 3666
4 TraesCS7B01G282900 chr1A 64260 67496 3236 True 246.000000 246 93.373000 3864 4029 2 chr1A.!!$R1 165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
683 686 0.035630 AGACTCAGATTGGGTGCAGC 60.036 55.0 7.55 7.55 26.09 5.25 F
850 853 0.107897 ATGGGCGAACGCATTGTAGA 60.108 50.0 20.16 0.00 46.48 2.59 F
868 871 0.254178 GAATCTTGGGAGGAGCAGCA 59.746 55.0 0.00 0.00 0.00 4.41 F
869 872 0.255318 AATCTTGGGAGGAGCAGCAG 59.745 55.0 0.00 0.00 0.00 4.24 F
1564 1592 0.984230 CTCCTCCTAGGGTTTGTGCA 59.016 55.0 9.46 0.00 35.59 4.57 F
3358 3482 0.325933 TGTGGCATCCTTGGTCTCTG 59.674 55.0 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 1592 0.744414 CACCGCATCCCGATTCACTT 60.744 55.000 0.00 0.00 40.02 3.16 R
1768 1832 2.893637 CGAAGGTAATACACTGCTGCT 58.106 47.619 0.00 0.00 0.00 4.24 R
1975 2065 3.592898 TCTTGAAGAGCTGTTGCGATA 57.407 42.857 0.00 0.00 45.42 2.92 R
2595 2697 3.686726 AGCAGAGGAATTGTTTGATCGTC 59.313 43.478 0.00 0.00 0.00 4.20 R
3373 3500 0.179153 CAGAAGTGATCGAGCGCTCA 60.179 55.000 34.69 22.54 0.00 4.26 R
4238 7444 0.706433 ACATTTCCCCACTCTGCCAT 59.294 50.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.355837 GTCCTCGTCTTGTGCGCA 60.356 61.111 5.66 5.66 0.00 6.09
44 45 0.602638 TCCTCGTCTTGTGCGCAAAT 60.603 50.000 14.00 0.00 33.73 2.32
52 53 1.788308 CTTGTGCGCAAATTCTTGTGG 59.212 47.619 14.00 0.00 42.29 4.17
55 56 1.786579 GTGCGCAAATTCTTGTGGAAC 59.213 47.619 14.00 0.00 43.81 3.62
57 58 1.269517 GCGCAAATTCTTGTGGAACCA 60.270 47.619 0.30 0.00 42.29 3.67
58 59 2.610232 GCGCAAATTCTTGTGGAACCAT 60.610 45.455 0.30 0.00 42.29 3.55
60 61 3.057315 CGCAAATTCTTGTGGAACCATCT 60.057 43.478 0.00 0.00 39.04 2.90
61 62 4.240096 GCAAATTCTTGTGGAACCATCTG 58.760 43.478 0.00 0.00 36.70 2.90
64 65 6.282930 CAAATTCTTGTGGAACCATCTGTTT 58.717 36.000 0.00 0.00 37.29 2.83
67 68 7.595819 ATTCTTGTGGAACCATCTGTTTTAA 57.404 32.000 0.00 0.00 37.29 1.52
69 70 8.698973 TTCTTGTGGAACCATCTGTTTTAATA 57.301 30.769 0.00 0.00 37.29 0.98
78 79 5.065988 ACCATCTGTTTTAATACGTCATGGC 59.934 40.000 14.98 0.00 0.00 4.40
82 83 3.127895 TGTTTTAATACGTCATGGCCTGC 59.872 43.478 3.32 0.00 0.00 4.85
89 90 3.008517 TCATGGCCTGCCCGAAGA 61.009 61.111 3.32 0.00 35.87 2.87
90 91 2.194056 CATGGCCTGCCCGAAGAT 59.806 61.111 3.32 0.00 35.87 2.40
91 92 2.191513 CATGGCCTGCCCGAAGATG 61.192 63.158 3.32 0.00 35.87 2.90
92 93 2.683465 ATGGCCTGCCCGAAGATGT 61.683 57.895 3.32 0.00 35.87 3.06
94 95 2.514824 GCCTGCCCGAAGATGTCC 60.515 66.667 0.00 0.00 0.00 4.02
96 97 1.299648 CCTGCCCGAAGATGTCCAA 59.700 57.895 0.00 0.00 0.00 3.53
101 102 3.885297 CTGCCCGAAGATGTCCAATAATT 59.115 43.478 0.00 0.00 0.00 1.40
105 106 5.278315 GCCCGAAGATGTCCAATAATTAACC 60.278 44.000 0.00 0.00 0.00 2.85
135 136 2.537143 GTCCTCAACCCAGTTCTCCTA 58.463 52.381 0.00 0.00 0.00 2.94
137 138 2.111972 TCCTCAACCCAGTTCTCCTAGT 59.888 50.000 0.00 0.00 0.00 2.57
138 139 2.498078 CCTCAACCCAGTTCTCCTAGTC 59.502 54.545 0.00 0.00 0.00 2.59
159 160 2.168521 CGGGAGACAACATGGTGAGTAT 59.831 50.000 19.90 0.00 0.00 2.12
171 172 2.522705 TGGTGAGTATCCCCTAGTCCAT 59.477 50.000 0.00 0.00 0.00 3.41
194 195 1.492176 CACCATCAGTAGCCCCTGAAT 59.508 52.381 6.98 0.00 44.21 2.57
195 196 1.771255 ACCATCAGTAGCCCCTGAATC 59.229 52.381 6.98 0.00 44.21 2.52
196 197 2.053244 CCATCAGTAGCCCCTGAATCT 58.947 52.381 6.98 0.00 44.21 2.40
214 215 2.123589 TCTGTCTTCAAGTTGGGGACA 58.876 47.619 21.44 21.44 39.83 4.02
220 221 1.056660 TCAAGTTGGGGACACTCCTC 58.943 55.000 2.34 0.00 42.67 3.71
222 223 0.471211 AAGTTGGGGACACTCCTCGA 60.471 55.000 0.00 0.00 40.96 4.04
223 224 1.292541 GTTGGGGACACTCCTCGAC 59.707 63.158 0.00 0.00 43.77 4.20
241 242 5.263968 TCGACTCTTCTGAACTGTTCTTT 57.736 39.130 20.18 0.00 0.00 2.52
251 252 3.869246 TGAACTGTTCTTTGTCTTCGGTC 59.131 43.478 20.18 0.00 0.00 4.79
281 282 4.320608 TGAAAGCTGGTTCAACAAATCC 57.679 40.909 0.00 0.00 34.59 3.01
284 285 2.154462 AGCTGGTTCAACAAATCCTCG 58.846 47.619 0.00 0.00 0.00 4.63
304 305 1.132262 GCATCTCCGATCTCGAGGATC 59.868 57.143 13.56 12.75 45.37 3.36
335 336 6.201044 GGTATATCCAAAGAGTTCACATGTCG 59.799 42.308 0.00 0.00 35.97 4.35
341 342 1.003580 AGAGTTCACATGTCGGGCATT 59.996 47.619 0.00 0.00 35.19 3.56
342 343 1.398390 GAGTTCACATGTCGGGCATTC 59.602 52.381 0.00 0.00 35.19 2.67
348 349 0.877649 CATGTCGGGCATTCGAGGAG 60.878 60.000 0.00 0.00 40.01 3.69
376 377 6.675728 GCTTTAAGTTCTCGGCCTTTATCAAG 60.676 42.308 0.00 0.00 0.00 3.02
377 378 3.983044 AGTTCTCGGCCTTTATCAAGT 57.017 42.857 0.00 0.00 0.00 3.16
398 399 3.429881 GTGCCTTGTTATTTTCTTGCAGC 59.570 43.478 0.00 0.00 0.00 5.25
400 401 3.554752 GCCTTGTTATTTTCTTGCAGCCA 60.555 43.478 0.00 0.00 0.00 4.75
409 410 1.174712 TCTTGCAGCCAAGCTCCAAC 61.175 55.000 0.00 0.00 46.38 3.77
416 417 2.436646 CAAGCTCCAACGCCGGAT 60.437 61.111 5.05 0.00 33.56 4.18
422 423 3.508840 CCAACGCCGGATTGCCTC 61.509 66.667 5.05 0.00 0.00 4.70
423 424 3.508840 CAACGCCGGATTGCCTCC 61.509 66.667 5.05 0.00 41.07 4.30
447 448 0.396435 TGTTGCACCACCTCGATCTT 59.604 50.000 0.00 0.00 0.00 2.40
451 452 1.086634 GCACCACCTCGATCTTGAGC 61.087 60.000 0.00 0.00 34.56 4.26
453 454 0.534412 ACCACCTCGATCTTGAGCTG 59.466 55.000 0.00 0.00 34.56 4.24
455 456 1.066573 CCACCTCGATCTTGAGCTGTT 60.067 52.381 0.00 0.00 34.56 3.16
457 458 1.005340 CCTCGATCTTGAGCTGTTGC 58.995 55.000 0.00 0.00 40.05 4.17
470 471 1.201965 GCTGTTGCTGTAGATTGTCGC 60.202 52.381 0.00 0.00 36.03 5.19
472 473 0.727398 GTTGCTGTAGATTGTCGCCC 59.273 55.000 0.00 0.00 0.00 6.13
473 474 0.613260 TTGCTGTAGATTGTCGCCCT 59.387 50.000 0.00 0.00 0.00 5.19
474 475 0.613260 TGCTGTAGATTGTCGCCCTT 59.387 50.000 0.00 0.00 0.00 3.95
475 476 1.003118 TGCTGTAGATTGTCGCCCTTT 59.997 47.619 0.00 0.00 0.00 3.11
476 477 1.398390 GCTGTAGATTGTCGCCCTTTG 59.602 52.381 0.00 0.00 0.00 2.77
477 478 2.009774 CTGTAGATTGTCGCCCTTTGG 58.990 52.381 0.00 0.00 0.00 3.28
497 500 1.059942 GAACAAAATTCCGCAAGCCG 58.940 50.000 0.00 0.00 0.00 5.52
515 518 6.258160 CAAGCCGGTTGTAATTTATTCTCTG 58.742 40.000 1.90 0.00 0.00 3.35
517 520 4.497507 GCCGGTTGTAATTTATTCTCTGCC 60.498 45.833 1.90 0.00 0.00 4.85
518 521 4.260620 CCGGTTGTAATTTATTCTCTGCCG 60.261 45.833 0.00 0.00 34.80 5.69
519 522 4.569162 CGGTTGTAATTTATTCTCTGCCGA 59.431 41.667 0.00 0.00 36.83 5.54
520 523 5.276868 CGGTTGTAATTTATTCTCTGCCGAG 60.277 44.000 0.00 0.00 36.83 4.63
521 524 5.815740 GGTTGTAATTTATTCTCTGCCGAGA 59.184 40.000 3.40 3.40 44.32 4.04
522 525 6.018669 GGTTGTAATTTATTCTCTGCCGAGAG 60.019 42.308 7.93 1.25 46.36 3.20
529 532 2.283173 TCTGCCGAGAGAGGTGCA 60.283 61.111 0.00 0.00 0.00 4.57
530 533 2.125753 CTGCCGAGAGAGGTGCAC 60.126 66.667 8.80 8.80 0.00 4.57
531 534 3.655810 CTGCCGAGAGAGGTGCACC 62.656 68.421 29.22 29.22 0.00 5.01
556 559 4.720530 CGGGTAATATAAAACCGCTGTC 57.279 45.455 1.85 0.00 37.93 3.51
557 560 3.495753 CGGGTAATATAAAACCGCTGTCC 59.504 47.826 1.85 0.00 37.93 4.02
558 561 3.817084 GGGTAATATAAAACCGCTGTCCC 59.183 47.826 1.85 0.00 36.57 4.46
559 562 3.817084 GGTAATATAAAACCGCTGTCCCC 59.183 47.826 0.00 0.00 0.00 4.81
560 563 3.655615 AATATAAAACCGCTGTCCCCA 57.344 42.857 0.00 0.00 0.00 4.96
561 564 2.702592 TATAAAACCGCTGTCCCCAG 57.297 50.000 0.00 0.00 41.91 4.45
562 565 0.696501 ATAAAACCGCTGTCCCCAGT 59.303 50.000 0.00 0.00 41.02 4.00
563 566 1.350071 TAAAACCGCTGTCCCCAGTA 58.650 50.000 0.00 0.00 41.02 2.74
564 567 0.036306 AAAACCGCTGTCCCCAGTAG 59.964 55.000 0.00 0.00 41.02 2.57
565 568 2.465055 AAACCGCTGTCCCCAGTAGC 62.465 60.000 0.00 0.00 41.02 3.58
566 569 4.162690 CCGCTGTCCCCAGTAGCC 62.163 72.222 0.00 0.00 41.02 3.93
567 570 4.162690 CGCTGTCCCCAGTAGCCC 62.163 72.222 0.00 0.00 41.02 5.19
568 571 3.798511 GCTGTCCCCAGTAGCCCC 61.799 72.222 0.00 0.00 41.02 5.80
569 572 2.041265 CTGTCCCCAGTAGCCCCT 59.959 66.667 0.00 0.00 33.80 4.79
570 573 2.285368 TGTCCCCAGTAGCCCCTG 60.285 66.667 0.00 0.00 0.00 4.45
571 574 2.040606 GTCCCCAGTAGCCCCTGA 59.959 66.667 1.92 0.00 34.23 3.86
572 575 2.066999 GTCCCCAGTAGCCCCTGAG 61.067 68.421 1.92 0.00 34.23 3.35
573 576 2.253656 TCCCCAGTAGCCCCTGAGA 61.254 63.158 1.92 0.00 34.23 3.27
574 577 2.066999 CCCCAGTAGCCCCTGAGAC 61.067 68.421 1.92 0.00 34.23 3.36
575 578 1.002274 CCCAGTAGCCCCTGAGACT 59.998 63.158 1.92 0.00 34.23 3.24
576 579 1.045911 CCCAGTAGCCCCTGAGACTC 61.046 65.000 0.00 0.00 34.23 3.36
577 580 0.324738 CCAGTAGCCCCTGAGACTCA 60.325 60.000 4.78 4.78 34.23 3.41
578 581 1.110442 CAGTAGCCCCTGAGACTCAG 58.890 60.000 23.34 23.34 43.91 3.35
591 594 5.391312 TGAGACTCAGATTGATTCGTGAA 57.609 39.130 0.00 0.00 32.15 3.18
592 595 5.783111 TGAGACTCAGATTGATTCGTGAAA 58.217 37.500 0.00 0.00 32.15 2.69
593 596 6.401394 TGAGACTCAGATTGATTCGTGAAAT 58.599 36.000 0.00 0.00 32.15 2.17
594 597 7.547227 TGAGACTCAGATTGATTCGTGAAATA 58.453 34.615 0.00 0.00 32.15 1.40
595 598 8.034804 TGAGACTCAGATTGATTCGTGAAATAA 58.965 33.333 0.00 0.00 32.15 1.40
596 599 8.417780 AGACTCAGATTGATTCGTGAAATAAG 57.582 34.615 0.00 0.00 32.15 1.73
597 600 7.009568 ACTCAGATTGATTCGTGAAATAAGC 57.990 36.000 0.00 0.00 0.00 3.09
598 601 6.037610 ACTCAGATTGATTCGTGAAATAAGCC 59.962 38.462 0.00 0.00 0.00 4.35
599 602 6.115446 TCAGATTGATTCGTGAAATAAGCCT 58.885 36.000 0.00 0.00 0.00 4.58
600 603 6.037500 TCAGATTGATTCGTGAAATAAGCCTG 59.962 38.462 0.00 0.00 0.00 4.85
601 604 6.037500 CAGATTGATTCGTGAAATAAGCCTGA 59.962 38.462 0.00 0.00 0.00 3.86
602 605 6.599244 AGATTGATTCGTGAAATAAGCCTGAA 59.401 34.615 0.00 0.00 0.00 3.02
603 606 5.801350 TGATTCGTGAAATAAGCCTGAAG 57.199 39.130 0.00 0.00 0.00 3.02
604 607 5.487433 TGATTCGTGAAATAAGCCTGAAGA 58.513 37.500 0.00 0.00 0.00 2.87
605 608 6.115446 TGATTCGTGAAATAAGCCTGAAGAT 58.885 36.000 0.00 0.00 0.00 2.40
606 609 6.258727 TGATTCGTGAAATAAGCCTGAAGATC 59.741 38.462 0.00 0.00 0.00 2.75
607 610 5.084818 TCGTGAAATAAGCCTGAAGATCA 57.915 39.130 0.00 0.00 0.00 2.92
608 611 5.487433 TCGTGAAATAAGCCTGAAGATCAA 58.513 37.500 0.00 0.00 0.00 2.57
609 612 5.937540 TCGTGAAATAAGCCTGAAGATCAAA 59.062 36.000 0.00 0.00 0.00 2.69
610 613 6.599244 TCGTGAAATAAGCCTGAAGATCAAAT 59.401 34.615 0.00 0.00 0.00 2.32
611 614 6.909357 CGTGAAATAAGCCTGAAGATCAAATC 59.091 38.462 0.00 0.00 0.00 2.17
612 615 7.199078 GTGAAATAAGCCTGAAGATCAAATCC 58.801 38.462 0.00 0.00 0.00 3.01
613 616 7.067981 GTGAAATAAGCCTGAAGATCAAATCCT 59.932 37.037 0.00 0.00 0.00 3.24
614 617 8.274322 TGAAATAAGCCTGAAGATCAAATCCTA 58.726 33.333 0.00 0.00 0.00 2.94
615 618 8.688747 AAATAAGCCTGAAGATCAAATCCTAG 57.311 34.615 0.00 0.00 0.00 3.02
616 619 4.084011 AGCCTGAAGATCAAATCCTAGC 57.916 45.455 0.00 0.00 0.00 3.42
617 620 3.715834 AGCCTGAAGATCAAATCCTAGCT 59.284 43.478 0.00 0.00 0.00 3.32
618 621 4.064388 GCCTGAAGATCAAATCCTAGCTC 58.936 47.826 0.00 0.00 0.00 4.09
619 622 4.305769 CCTGAAGATCAAATCCTAGCTCG 58.694 47.826 0.00 0.00 0.00 5.03
620 623 4.038522 CCTGAAGATCAAATCCTAGCTCGA 59.961 45.833 0.00 0.00 0.00 4.04
621 624 4.938080 TGAAGATCAAATCCTAGCTCGAC 58.062 43.478 0.00 0.00 0.00 4.20
622 625 4.402474 TGAAGATCAAATCCTAGCTCGACA 59.598 41.667 0.00 0.00 0.00 4.35
623 626 5.105351 TGAAGATCAAATCCTAGCTCGACAA 60.105 40.000 0.00 0.00 0.00 3.18
624 627 5.543507 AGATCAAATCCTAGCTCGACAAT 57.456 39.130 0.00 0.00 0.00 2.71
625 628 6.656632 AGATCAAATCCTAGCTCGACAATA 57.343 37.500 0.00 0.00 0.00 1.90
626 629 7.238486 AGATCAAATCCTAGCTCGACAATAT 57.762 36.000 0.00 0.00 0.00 1.28
627 630 8.354711 AGATCAAATCCTAGCTCGACAATATA 57.645 34.615 0.00 0.00 0.00 0.86
628 631 8.247562 AGATCAAATCCTAGCTCGACAATATAC 58.752 37.037 0.00 0.00 0.00 1.47
629 632 7.526142 TCAAATCCTAGCTCGACAATATACT 57.474 36.000 0.00 0.00 0.00 2.12
630 633 7.952671 TCAAATCCTAGCTCGACAATATACTT 58.047 34.615 0.00 0.00 0.00 2.24
631 634 8.421784 TCAAATCCTAGCTCGACAATATACTTT 58.578 33.333 0.00 0.00 0.00 2.66
632 635 9.692749 CAAATCCTAGCTCGACAATATACTTTA 57.307 33.333 0.00 0.00 0.00 1.85
633 636 9.915629 AAATCCTAGCTCGACAATATACTTTAG 57.084 33.333 0.00 0.00 0.00 1.85
634 637 7.450124 TCCTAGCTCGACAATATACTTTAGG 57.550 40.000 0.00 0.00 0.00 2.69
635 638 7.229308 TCCTAGCTCGACAATATACTTTAGGA 58.771 38.462 0.00 0.00 32.71 2.94
636 639 7.722728 TCCTAGCTCGACAATATACTTTAGGAA 59.277 37.037 0.00 0.00 32.34 3.36
637 640 7.808856 CCTAGCTCGACAATATACTTTAGGAAC 59.191 40.741 0.00 0.00 0.00 3.62
638 641 7.108841 AGCTCGACAATATACTTTAGGAACA 57.891 36.000 0.00 0.00 0.00 3.18
639 642 7.727181 AGCTCGACAATATACTTTAGGAACAT 58.273 34.615 0.00 0.00 0.00 2.71
640 643 8.857098 AGCTCGACAATATACTTTAGGAACATA 58.143 33.333 0.00 0.00 0.00 2.29
641 644 9.472361 GCTCGACAATATACTTTAGGAACATAA 57.528 33.333 0.00 0.00 0.00 1.90
647 650 9.825972 CAATATACTTTAGGAACATAAATGCGG 57.174 33.333 0.00 0.00 0.00 5.69
648 651 9.569122 AATATACTTTAGGAACATAAATGCGGT 57.431 29.630 0.00 0.00 0.00 5.68
649 652 5.560966 ACTTTAGGAACATAAATGCGGTG 57.439 39.130 0.00 0.00 0.00 4.94
650 653 5.007682 ACTTTAGGAACATAAATGCGGTGT 58.992 37.500 0.00 0.00 0.00 4.16
651 654 4.955925 TTAGGAACATAAATGCGGTGTG 57.044 40.909 0.00 0.00 0.00 3.82
652 655 1.472480 AGGAACATAAATGCGGTGTGC 59.528 47.619 0.00 0.00 46.70 4.57
661 664 2.657237 GCGGTGTGCAGTAGTCCT 59.343 61.111 0.00 0.00 45.45 3.85
662 665 1.446272 GCGGTGTGCAGTAGTCCTC 60.446 63.158 0.00 0.00 45.45 3.71
663 666 1.154016 CGGTGTGCAGTAGTCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
664 667 1.583495 CGGTGTGCAGTAGTCCTCGA 61.583 60.000 0.00 0.00 0.00 4.04
665 668 0.171455 GGTGTGCAGTAGTCCTCGAG 59.829 60.000 5.13 5.13 0.00 4.04
666 669 1.166129 GTGTGCAGTAGTCCTCGAGA 58.834 55.000 15.71 0.00 0.00 4.04
667 670 1.135632 GTGTGCAGTAGTCCTCGAGAC 60.136 57.143 15.71 10.33 46.71 3.36
676 679 2.861462 GTCCTCGAGACTCAGATTGG 57.139 55.000 15.71 0.00 42.69 3.16
677 680 1.407258 GTCCTCGAGACTCAGATTGGG 59.593 57.143 15.71 0.00 42.69 4.12
678 681 1.006043 TCCTCGAGACTCAGATTGGGT 59.994 52.381 15.71 0.00 30.71 4.51
679 682 1.135915 CCTCGAGACTCAGATTGGGTG 59.864 57.143 15.71 0.00 26.09 4.61
680 683 0.532573 TCGAGACTCAGATTGGGTGC 59.467 55.000 2.82 0.00 26.09 5.01
681 684 0.247460 CGAGACTCAGATTGGGTGCA 59.753 55.000 2.82 0.00 26.09 4.57
682 685 1.738365 CGAGACTCAGATTGGGTGCAG 60.738 57.143 2.82 0.00 26.09 4.41
683 686 0.035630 AGACTCAGATTGGGTGCAGC 60.036 55.000 7.55 7.55 26.09 5.25
684 687 1.001641 ACTCAGATTGGGTGCAGCC 60.002 57.895 28.15 28.15 23.94 4.85
685 688 1.302285 CTCAGATTGGGTGCAGCCT 59.698 57.895 33.29 16.56 37.43 4.58
686 689 1.001764 TCAGATTGGGTGCAGCCTG 60.002 57.895 33.29 23.35 37.43 4.85
687 690 1.001764 CAGATTGGGTGCAGCCTGA 60.002 57.895 33.29 22.63 37.43 3.86
688 691 1.001641 AGATTGGGTGCAGCCTGAC 60.002 57.895 33.29 22.75 37.43 3.51
689 692 2.036256 ATTGGGTGCAGCCTGACC 59.964 61.111 33.29 8.44 37.43 4.02
690 693 2.769652 GATTGGGTGCAGCCTGACCA 62.770 60.000 33.29 12.22 37.43 4.02
691 694 2.159101 ATTGGGTGCAGCCTGACCAT 62.159 55.000 33.29 15.50 37.43 3.55
692 695 2.439156 GGGTGCAGCCTGACCATC 60.439 66.667 27.63 0.00 37.43 3.51
693 696 2.439156 GGTGCAGCCTGACCATCC 60.439 66.667 4.03 0.00 31.97 3.51
694 697 2.673523 GTGCAGCCTGACCATCCT 59.326 61.111 0.00 0.00 0.00 3.24
695 698 1.626356 GGTGCAGCCTGACCATCCTA 61.626 60.000 4.03 0.00 31.97 2.94
696 699 0.253044 GTGCAGCCTGACCATCCTAA 59.747 55.000 0.00 0.00 0.00 2.69
697 700 0.991146 TGCAGCCTGACCATCCTAAA 59.009 50.000 0.00 0.00 0.00 1.85
698 701 1.354031 TGCAGCCTGACCATCCTAAAA 59.646 47.619 0.00 0.00 0.00 1.52
699 702 2.224992 TGCAGCCTGACCATCCTAAAAA 60.225 45.455 0.00 0.00 0.00 1.94
700 703 3.026694 GCAGCCTGACCATCCTAAAAAT 58.973 45.455 0.00 0.00 0.00 1.82
701 704 3.067320 GCAGCCTGACCATCCTAAAAATC 59.933 47.826 0.00 0.00 0.00 2.17
702 705 3.313526 CAGCCTGACCATCCTAAAAATCG 59.686 47.826 0.00 0.00 0.00 3.34
703 706 3.054361 AGCCTGACCATCCTAAAAATCGT 60.054 43.478 0.00 0.00 0.00 3.73
704 707 4.163458 AGCCTGACCATCCTAAAAATCGTA 59.837 41.667 0.00 0.00 0.00 3.43
705 708 4.879545 GCCTGACCATCCTAAAAATCGTAA 59.120 41.667 0.00 0.00 0.00 3.18
706 709 5.531287 GCCTGACCATCCTAAAAATCGTAAT 59.469 40.000 0.00 0.00 0.00 1.89
707 710 6.293462 GCCTGACCATCCTAAAAATCGTAATC 60.293 42.308 0.00 0.00 0.00 1.75
708 711 6.992715 CCTGACCATCCTAAAAATCGTAATCT 59.007 38.462 0.00 0.00 0.00 2.40
709 712 7.499232 CCTGACCATCCTAAAAATCGTAATCTT 59.501 37.037 0.00 0.00 0.00 2.40
710 713 8.433421 TGACCATCCTAAAAATCGTAATCTTC 57.567 34.615 0.00 0.00 0.00 2.87
711 714 8.265055 TGACCATCCTAAAAATCGTAATCTTCT 58.735 33.333 0.00 0.00 0.00 2.85
712 715 8.664211 ACCATCCTAAAAATCGTAATCTTCTC 57.336 34.615 0.00 0.00 0.00 2.87
713 716 8.265055 ACCATCCTAAAAATCGTAATCTTCTCA 58.735 33.333 0.00 0.00 0.00 3.27
714 717 9.109393 CCATCCTAAAAATCGTAATCTTCTCAA 57.891 33.333 0.00 0.00 0.00 3.02
732 735 9.607988 TCTTCTCAAAAACTGTATTACACTTCA 57.392 29.630 0.00 0.00 0.00 3.02
743 746 9.463443 ACTGTATTACACTTCAAAATTTTCTGC 57.537 29.630 0.00 0.00 0.00 4.26
744 747 9.462174 CTGTATTACACTTCAAAATTTTCTGCA 57.538 29.630 0.00 0.00 0.00 4.41
745 748 9.979578 TGTATTACACTTCAAAATTTTCTGCAT 57.020 25.926 0.00 0.00 0.00 3.96
768 771 7.660112 CATTAAATAGTCAATGCATTAGCCCA 58.340 34.615 12.53 0.00 41.13 5.36
769 772 7.652524 TTAAATAGTCAATGCATTAGCCCAA 57.347 32.000 12.53 0.00 41.13 4.12
770 773 5.779529 AATAGTCAATGCATTAGCCCAAG 57.220 39.130 12.53 0.00 41.13 3.61
771 774 3.370840 AGTCAATGCATTAGCCCAAGA 57.629 42.857 12.53 0.06 41.13 3.02
772 775 3.907221 AGTCAATGCATTAGCCCAAGAT 58.093 40.909 12.53 0.00 41.13 2.40
773 776 4.284178 AGTCAATGCATTAGCCCAAGATT 58.716 39.130 12.53 0.00 41.13 2.40
774 777 4.713321 AGTCAATGCATTAGCCCAAGATTT 59.287 37.500 12.53 0.00 41.13 2.17
775 778 4.807304 GTCAATGCATTAGCCCAAGATTTG 59.193 41.667 12.53 0.00 41.13 2.32
792 795 2.516930 GGATGGGACACATGGCCG 60.517 66.667 0.00 0.00 47.00 6.13
793 796 2.589540 GATGGGACACATGGCCGA 59.410 61.111 0.00 0.00 47.00 5.54
794 797 1.819632 GATGGGACACATGGCCGAC 60.820 63.158 0.00 0.00 47.00 4.79
795 798 3.344137 ATGGGACACATGGCCGACC 62.344 63.158 0.00 0.00 47.00 4.79
796 799 3.717294 GGGACACATGGCCGACCT 61.717 66.667 0.00 0.00 47.00 3.85
797 800 2.363975 GGGACACATGGCCGACCTA 61.364 63.158 0.00 0.00 47.00 3.08
798 801 1.144057 GGACACATGGCCGACCTAG 59.856 63.158 0.00 0.00 36.63 3.02
799 802 1.144057 GACACATGGCCGACCTAGG 59.856 63.158 7.41 7.41 36.63 3.02
800 803 1.305802 ACACATGGCCGACCTAGGA 60.306 57.895 17.98 0.00 36.63 2.94
801 804 0.691078 ACACATGGCCGACCTAGGAT 60.691 55.000 17.98 0.00 36.63 3.24
802 805 0.250038 CACATGGCCGACCTAGGATG 60.250 60.000 17.98 10.06 36.63 3.51
803 806 1.372683 CATGGCCGACCTAGGATGG 59.627 63.158 17.98 17.21 36.63 3.51
804 807 1.074471 ATGGCCGACCTAGGATGGT 60.074 57.895 17.98 0.00 44.10 3.55
805 808 0.190069 ATGGCCGACCTAGGATGGTA 59.810 55.000 17.98 10.14 41.00 3.25
806 809 0.190069 TGGCCGACCTAGGATGGTAT 59.810 55.000 17.98 0.00 41.00 2.73
807 810 0.896226 GGCCGACCTAGGATGGTATC 59.104 60.000 17.98 0.00 41.00 2.24
808 811 1.550409 GGCCGACCTAGGATGGTATCT 60.550 57.143 17.98 0.00 41.00 1.98
809 812 1.819903 GCCGACCTAGGATGGTATCTC 59.180 57.143 17.98 0.00 41.00 2.75
810 813 2.448453 CCGACCTAGGATGGTATCTCC 58.552 57.143 17.98 0.00 41.00 3.71
811 814 2.041891 CCGACCTAGGATGGTATCTCCT 59.958 54.545 17.98 0.00 45.22 3.69
812 815 3.349022 CGACCTAGGATGGTATCTCCTC 58.651 54.545 17.98 0.00 42.25 3.71
813 816 3.349022 GACCTAGGATGGTATCTCCTCG 58.651 54.545 17.98 0.00 42.25 4.63
814 817 2.041891 ACCTAGGATGGTATCTCCTCGG 59.958 54.545 17.98 8.04 46.37 4.63
815 818 2.621929 CCTAGGATGGTATCTCCTCGGG 60.622 59.091 1.05 0.95 42.25 5.14
816 819 1.158904 AGGATGGTATCTCCTCGGGA 58.841 55.000 0.00 0.00 38.87 5.14
817 820 1.503784 AGGATGGTATCTCCTCGGGAA 59.496 52.381 0.00 0.00 38.87 3.97
818 821 2.112691 AGGATGGTATCTCCTCGGGAAT 59.887 50.000 0.00 0.00 38.87 3.01
819 822 2.907042 GGATGGTATCTCCTCGGGAATT 59.093 50.000 0.00 0.00 37.07 2.17
820 823 3.328050 GGATGGTATCTCCTCGGGAATTT 59.672 47.826 0.00 0.00 37.07 1.82
821 824 4.202472 GGATGGTATCTCCTCGGGAATTTT 60.202 45.833 0.00 0.00 37.07 1.82
822 825 4.855298 TGGTATCTCCTCGGGAATTTTT 57.145 40.909 0.00 0.00 37.07 1.94
842 845 1.492720 TTTTTGAAATGGGCGAACGC 58.507 45.000 10.81 10.81 41.06 4.84
843 846 0.385751 TTTTGAAATGGGCGAACGCA 59.614 45.000 20.16 1.61 44.11 5.24
848 851 4.627788 ATGGGCGAACGCATTGTA 57.372 50.000 20.16 2.64 46.48 2.41
849 852 2.393557 ATGGGCGAACGCATTGTAG 58.606 52.632 20.16 0.00 46.48 2.74
850 853 0.107897 ATGGGCGAACGCATTGTAGA 60.108 50.000 20.16 0.00 46.48 2.59
851 854 0.320858 TGGGCGAACGCATTGTAGAA 60.321 50.000 20.16 0.00 44.11 2.10
852 855 1.014352 GGGCGAACGCATTGTAGAAT 58.986 50.000 20.16 0.00 44.11 2.40
853 856 1.003866 GGGCGAACGCATTGTAGAATC 60.004 52.381 20.16 0.00 44.11 2.52
854 857 1.933853 GGCGAACGCATTGTAGAATCT 59.066 47.619 20.16 0.00 44.11 2.40
855 858 2.351726 GGCGAACGCATTGTAGAATCTT 59.648 45.455 20.16 0.00 44.11 2.40
856 859 3.345714 GCGAACGCATTGTAGAATCTTG 58.654 45.455 14.26 0.00 41.49 3.02
857 860 3.785505 GCGAACGCATTGTAGAATCTTGG 60.786 47.826 14.26 0.00 41.49 3.61
858 861 3.242413 CGAACGCATTGTAGAATCTTGGG 60.242 47.826 0.00 0.00 0.00 4.12
859 862 3.627395 ACGCATTGTAGAATCTTGGGA 57.373 42.857 4.14 0.00 0.00 4.37
860 863 3.535561 ACGCATTGTAGAATCTTGGGAG 58.464 45.455 4.14 0.00 0.00 4.30
861 864 2.874701 CGCATTGTAGAATCTTGGGAGG 59.125 50.000 0.00 0.00 0.00 4.30
862 865 3.432186 CGCATTGTAGAATCTTGGGAGGA 60.432 47.826 0.00 0.00 0.00 3.71
863 866 4.133078 GCATTGTAGAATCTTGGGAGGAG 58.867 47.826 0.00 0.00 0.00 3.69
864 867 3.914426 TTGTAGAATCTTGGGAGGAGC 57.086 47.619 0.00 0.00 0.00 4.70
865 868 2.832838 TGTAGAATCTTGGGAGGAGCA 58.167 47.619 0.00 0.00 0.00 4.26
866 869 2.768527 TGTAGAATCTTGGGAGGAGCAG 59.231 50.000 0.00 0.00 0.00 4.24
867 870 0.545646 AGAATCTTGGGAGGAGCAGC 59.454 55.000 0.00 0.00 0.00 5.25
868 871 0.254178 GAATCTTGGGAGGAGCAGCA 59.746 55.000 0.00 0.00 0.00 4.41
869 872 0.255318 AATCTTGGGAGGAGCAGCAG 59.745 55.000 0.00 0.00 0.00 4.24
870 873 2.268167 ATCTTGGGAGGAGCAGCAGC 62.268 60.000 0.00 0.00 42.56 5.25
871 874 3.991725 CTTGGGAGGAGCAGCAGCC 62.992 68.421 0.00 0.00 43.56 4.85
914 917 7.745620 ACAAATCGTTTAGGTGAGAAAATCT 57.254 32.000 0.00 0.00 0.00 2.40
1561 1589 1.657804 CACCTCCTCCTAGGGTTTGT 58.342 55.000 9.46 0.00 41.32 2.83
1564 1592 0.984230 CTCCTCCTAGGGTTTGTGCA 59.016 55.000 9.46 0.00 35.59 4.57
1595 1623 1.570857 ATGCGGTGGATTCTCCCCAA 61.571 55.000 0.00 0.00 35.03 4.12
1624 1652 2.910688 ACTACCGGTGCCATGAATAG 57.089 50.000 19.93 5.40 0.00 1.73
1768 1832 7.794041 AGCATTGGCCAATTAGATCATTTTAA 58.206 30.769 28.68 0.00 42.56 1.52
1769 1833 7.929785 AGCATTGGCCAATTAGATCATTTTAAG 59.070 33.333 28.68 12.66 42.56 1.85
1775 1839 6.420008 GCCAATTAGATCATTTTAAGCAGCAG 59.580 38.462 0.00 0.00 0.00 4.24
1782 1846 8.737168 AGATCATTTTAAGCAGCAGTGTATTA 57.263 30.769 0.00 0.00 0.00 0.98
1786 1850 7.393234 TCATTTTAAGCAGCAGTGTATTACCTT 59.607 33.333 0.00 0.00 0.00 3.50
1975 2065 7.944729 TCTAGAGCAATTTGAAAGGCTAAAT 57.055 32.000 6.82 0.00 36.59 1.40
2011 2101 7.276878 GCTCTTCAAGATTAACTAGAGGAACAC 59.723 40.741 0.00 0.00 32.48 3.32
2088 2178 1.985334 TTTGCTGAATGCTGATTGCG 58.015 45.000 0.00 0.00 46.63 4.85
2341 2431 5.539574 TGGATCTTTCTTTGCATTGAAAGGA 59.460 36.000 27.06 19.25 45.28 3.36
2434 2534 5.506649 GGGAATCGCTGTTCAACAAAACTTA 60.507 40.000 0.00 0.00 0.00 2.24
2437 2537 5.493133 TCGCTGTTCAACAAAACTTATGT 57.507 34.783 0.00 0.00 0.00 2.29
2535 2637 8.792830 TCTCCTTGAAGATATTGGTTAAAGTG 57.207 34.615 0.00 0.00 0.00 3.16
2595 2697 9.760660 GCATCTTGTACTTGTATTTTTCTAGTG 57.239 33.333 0.00 0.00 0.00 2.74
2627 2729 6.469782 ACAATTCCTCTGCTTTGAAGAAAA 57.530 33.333 0.00 0.00 0.00 2.29
2768 2875 4.328983 GCATTGTCAATGATTTTCTGCCAG 59.671 41.667 26.36 0.00 41.46 4.85
2836 2943 2.874014 TGTTCCATGTCAAAGGCATGA 58.126 42.857 12.75 0.00 44.60 3.07
2855 2962 9.277783 AGGCATGATTAGTGAATAACTGAATAC 57.722 33.333 0.00 0.00 40.26 1.89
2944 3057 9.273137 ACATTTTGGGTTTTATGTATTCCCATA 57.727 29.630 2.00 0.00 45.98 2.74
3071 3195 7.713764 ATGTTTTTGGTACATTTTCTGAAGC 57.286 32.000 0.00 0.00 39.30 3.86
3209 3333 6.226787 TCTTGTCTTCAGGTGAGAATTTCTC 58.773 40.000 17.76 17.76 43.65 2.87
3210 3334 4.899502 TGTCTTCAGGTGAGAATTTCTCC 58.100 43.478 20.87 13.11 42.73 3.71
3212 3336 5.072329 TGTCTTCAGGTGAGAATTTCTCCTT 59.928 40.000 20.87 8.35 45.32 3.36
3213 3337 6.000840 GTCTTCAGGTGAGAATTTCTCCTTT 58.999 40.000 20.87 6.03 45.32 3.11
3214 3338 7.162082 GTCTTCAGGTGAGAATTTCTCCTTTA 58.838 38.462 20.87 2.49 45.32 1.85
3215 3339 7.118535 GTCTTCAGGTGAGAATTTCTCCTTTAC 59.881 40.741 20.87 13.13 45.32 2.01
3216 3340 6.433847 TCAGGTGAGAATTTCTCCTTTACA 57.566 37.500 20.87 2.09 45.32 2.41
3217 3341 6.231211 TCAGGTGAGAATTTCTCCTTTACAC 58.769 40.000 20.87 12.74 45.32 2.90
3245 3369 7.042797 ACAATCTCTTGTGCTGTTATTTTGT 57.957 32.000 0.00 0.00 43.92 2.83
3267 3391 2.170187 CCTTCTCTGGATGCTAGCAACT 59.830 50.000 23.54 5.90 0.00 3.16
3348 3472 0.675633 AGTTGCAGTTTGTGGCATCC 59.324 50.000 0.00 0.00 40.17 3.51
3354 3478 1.270550 CAGTTTGTGGCATCCTTGGTC 59.729 52.381 0.00 0.00 0.00 4.02
3358 3482 0.325933 TGTGGCATCCTTGGTCTCTG 59.674 55.000 0.00 0.00 0.00 3.35
3359 3483 0.393537 GTGGCATCCTTGGTCTCTGG 60.394 60.000 0.00 0.00 0.00 3.86
3360 3484 0.842030 TGGCATCCTTGGTCTCTGGT 60.842 55.000 0.00 0.00 0.00 4.00
3362 3486 0.393537 GCATCCTTGGTCTCTGGTGG 60.394 60.000 0.00 0.00 0.00 4.61
3363 3487 0.393537 CATCCTTGGTCTCTGGTGGC 60.394 60.000 0.00 0.00 0.00 5.01
3364 3488 0.842030 ATCCTTGGTCTCTGGTGGCA 60.842 55.000 0.00 0.00 0.00 4.92
3366 3490 1.757306 CTTGGTCTCTGGTGGCACT 59.243 57.895 18.45 0.00 0.00 4.40
3368 3492 2.055689 TTGGTCTCTGGTGGCACTGG 62.056 60.000 18.45 10.53 0.00 4.00
3369 3493 2.359230 GTCTCTGGTGGCACTGGC 60.359 66.667 18.45 1.07 40.13 4.85
3392 3519 0.179153 TGAGCGCTCGATCACTTCTG 60.179 55.000 30.75 0.00 35.47 3.02
3400 3527 4.386049 CGCTCGATCACTTCTGTTAACTTT 59.614 41.667 7.22 0.00 0.00 2.66
3549 3676 2.511600 GGCGATGAGTTCACCCGG 60.512 66.667 0.00 0.00 0.00 5.73
3551 3678 2.100631 GCGATGAGTTCACCCGGTG 61.101 63.158 11.73 11.73 34.45 4.94
3570 3698 1.278985 TGGTTGCTCTACCCATCTGTG 59.721 52.381 0.00 0.00 37.39 3.66
3573 3701 0.817654 TGCTCTACCCATCTGTGTCG 59.182 55.000 0.00 0.00 0.00 4.35
3581 3710 2.046892 ATCTGTGTCGGCCTGTGC 60.047 61.111 0.00 0.00 0.00 4.57
3591 3720 3.126225 GCCTGTGCTCAGCTCAGC 61.126 66.667 21.20 1.01 45.23 4.26
3592 3721 2.814341 CCTGTGCTCAGCTCAGCG 60.814 66.667 21.20 11.83 45.23 5.18
3705 3835 8.794553 ACTTACCGATAGTATTACTGATTCCAG 58.205 37.037 6.60 0.00 45.76 3.86
3799 3929 8.897752 AGAGATAGTTTGTGAATTTAGGAATGC 58.102 33.333 0.00 0.00 0.00 3.56
3801 3931 8.897752 AGATAGTTTGTGAATTTAGGAATGCTC 58.102 33.333 0.00 0.00 0.00 4.26
3877 4007 5.329399 ACATTACCCTTATTGCCTCAAACA 58.671 37.500 0.00 0.00 0.00 2.83
3879 4009 6.440328 ACATTACCCTTATTGCCTCAAACATT 59.560 34.615 0.00 0.00 0.00 2.71
3913 6569 2.559231 GGCGATAGTCCCTCTAAGAAGG 59.441 54.545 0.00 0.00 39.35 3.46
3920 6576 3.011934 AGTCCCTCTAAGAAGGTAGCTGT 59.988 47.826 0.00 0.00 34.34 4.40
3966 7167 0.612174 AGCTGGCTGAGGTCTCGTTA 60.612 55.000 0.00 0.00 0.00 3.18
4010 7211 0.669318 CGCTCCGCCAACTAAGAACA 60.669 55.000 0.00 0.00 0.00 3.18
4023 7224 2.211250 AAGAACAGCCATGCATCACT 57.789 45.000 0.00 0.00 0.00 3.41
4024 7225 2.211250 AGAACAGCCATGCATCACTT 57.789 45.000 0.00 0.00 0.00 3.16
4029 7230 0.040058 AGCCATGCATCACTTCCCAA 59.960 50.000 0.00 0.00 0.00 4.12
4030 7231 0.896923 GCCATGCATCACTTCCCAAA 59.103 50.000 0.00 0.00 0.00 3.28
4031 7232 1.275856 GCCATGCATCACTTCCCAAAA 59.724 47.619 0.00 0.00 0.00 2.44
4033 7234 3.328505 CCATGCATCACTTCCCAAAAAC 58.671 45.455 0.00 0.00 0.00 2.43
4077 7282 3.251729 CCTGGACTGCATCAAAATATCCG 59.748 47.826 0.00 0.00 0.00 4.18
4085 7290 9.683069 GACTGCATCAAAATATCCGATTTAAAT 57.317 29.630 0.00 0.00 0.00 1.40
4095 7300 9.462606 AAATATCCGATTTAAATATCCCTGGAC 57.537 33.333 0.00 0.00 0.00 4.02
4096 7301 6.704056 ATCCGATTTAAATATCCCTGGACT 57.296 37.500 0.00 0.00 0.00 3.85
4097 7302 5.865085 TCCGATTTAAATATCCCTGGACTG 58.135 41.667 0.00 0.00 0.00 3.51
4098 7303 4.455877 CCGATTTAAATATCCCTGGACTGC 59.544 45.833 0.00 0.00 0.00 4.40
4099 7304 5.063204 CGATTTAAATATCCCTGGACTGCA 58.937 41.667 0.00 0.00 0.00 4.41
4100 7305 5.707298 CGATTTAAATATCCCTGGACTGCAT 59.293 40.000 0.00 0.00 0.00 3.96
4101 7306 6.128172 CGATTTAAATATCCCTGGACTGCATC 60.128 42.308 0.00 0.00 0.00 3.91
4102 7307 5.645056 TTAAATATCCCTGGACTGCATCA 57.355 39.130 0.00 0.00 0.00 3.07
4103 7308 4.524802 AAATATCCCTGGACTGCATCAA 57.475 40.909 0.00 0.00 0.00 2.57
4104 7309 4.524802 AATATCCCTGGACTGCATCAAA 57.475 40.909 0.00 0.00 0.00 2.69
4105 7310 2.905415 ATCCCTGGACTGCATCAAAA 57.095 45.000 0.00 0.00 0.00 2.44
4106 7311 2.905415 TCCCTGGACTGCATCAAAAT 57.095 45.000 0.00 0.00 0.00 1.82
4107 7312 4.524802 ATCCCTGGACTGCATCAAAATA 57.475 40.909 0.00 0.00 0.00 1.40
4108 7313 4.524802 TCCCTGGACTGCATCAAAATAT 57.475 40.909 0.00 0.00 0.00 1.28
4109 7314 4.464008 TCCCTGGACTGCATCAAAATATC 58.536 43.478 0.00 0.00 0.00 1.63
4110 7315 3.571401 CCCTGGACTGCATCAAAATATCC 59.429 47.826 0.00 0.00 0.00 2.59
4111 7316 3.251729 CCTGGACTGCATCAAAATATCCG 59.748 47.826 0.00 0.00 0.00 4.18
4112 7317 4.129380 CTGGACTGCATCAAAATATCCGA 58.871 43.478 0.00 0.00 0.00 4.55
4113 7318 4.717877 TGGACTGCATCAAAATATCCGAT 58.282 39.130 0.00 0.00 0.00 4.18
4114 7319 5.132502 TGGACTGCATCAAAATATCCGATT 58.867 37.500 0.00 0.00 0.00 3.34
4115 7320 5.593909 TGGACTGCATCAAAATATCCGATTT 59.406 36.000 0.00 0.00 0.00 2.17
4116 7321 6.770303 TGGACTGCATCAAAATATCCGATTTA 59.230 34.615 0.00 0.00 0.00 1.40
4117 7322 7.284261 TGGACTGCATCAAAATATCCGATTTAA 59.716 33.333 0.00 0.00 0.00 1.52
4118 7323 8.134895 GGACTGCATCAAAATATCCGATTTAAA 58.865 33.333 0.00 0.00 0.00 1.52
4238 7444 1.486310 GGACCACAGCTCACATATCCA 59.514 52.381 0.00 0.00 0.00 3.41
4239 7445 2.105477 GGACCACAGCTCACATATCCAT 59.895 50.000 0.00 0.00 0.00 3.41
4247 7455 2.224475 GCTCACATATCCATGGCAGAGT 60.224 50.000 6.96 0.00 36.39 3.24
4257 7465 0.706433 ATGGCAGAGTGGGGAAATGT 59.294 50.000 0.00 0.00 0.00 2.71
4295 7691 4.252073 GCTCCACCATCTGATGATACATC 58.748 47.826 18.92 4.98 0.00 3.06
4296 7692 4.829968 CTCCACCATCTGATGATACATCC 58.170 47.826 18.92 0.00 0.00 3.51
4297 7693 3.259123 TCCACCATCTGATGATACATCCG 59.741 47.826 18.92 2.33 0.00 4.18
4298 7694 3.007290 CCACCATCTGATGATACATCCGT 59.993 47.826 18.92 2.94 0.00 4.69
4299 7695 3.992427 CACCATCTGATGATACATCCGTG 59.008 47.826 18.92 11.17 0.00 4.94
4300 7696 3.897505 ACCATCTGATGATACATCCGTGA 59.102 43.478 18.92 5.77 0.00 4.35
4301 7697 4.529769 ACCATCTGATGATACATCCGTGAT 59.470 41.667 18.92 7.40 0.00 3.06
4309 7705 3.380320 TGATACATCCGTGATTCGTGTCT 59.620 43.478 0.00 0.00 37.94 3.41
4357 7767 3.279434 GGATAAAGTCCACATCACCACC 58.721 50.000 0.00 0.00 46.96 4.61
4424 7837 3.055167 ACATGTATGTGTTCCTAGCTGCA 60.055 43.478 0.00 0.00 40.03 4.41
4460 7874 2.040278 AGTATTTTGTCTGGCCAGCAGA 59.960 45.455 28.91 20.09 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.069381 ACTCTTCTAAATCATAGGCCTTTGGT 60.069 38.462 21.35 13.20 0.00 3.67
1 2 6.360618 ACTCTTCTAAATCATAGGCCTTTGG 58.639 40.000 21.35 7.21 0.00 3.28
2 3 6.484977 GGACTCTTCTAAATCATAGGCCTTTG 59.515 42.308 12.58 14.95 0.00 2.77
3 4 6.388394 AGGACTCTTCTAAATCATAGGCCTTT 59.612 38.462 12.58 0.00 39.52 3.11
4 5 5.908247 AGGACTCTTCTAAATCATAGGCCTT 59.092 40.000 12.58 0.00 39.52 4.35
12 13 5.477291 ACAAGACGAGGACTCTTCTAAATCA 59.523 40.000 8.51 0.00 37.24 2.57
16 17 3.057456 GCACAAGACGAGGACTCTTCTAA 60.057 47.826 8.51 0.00 37.24 2.10
17 18 2.488545 GCACAAGACGAGGACTCTTCTA 59.511 50.000 8.51 0.00 37.24 2.10
18 19 1.271102 GCACAAGACGAGGACTCTTCT 59.729 52.381 2.81 2.81 39.50 2.85
19 20 1.704070 GCACAAGACGAGGACTCTTC 58.296 55.000 0.00 0.00 0.00 2.87
20 21 0.039074 CGCACAAGACGAGGACTCTT 60.039 55.000 0.00 0.00 0.00 2.85
21 22 1.581954 CGCACAAGACGAGGACTCT 59.418 57.895 0.00 0.00 0.00 3.24
41 42 6.484364 AAACAGATGGTTCCACAAGAATTT 57.516 33.333 0.00 0.00 39.29 1.82
44 45 7.595819 ATTAAAACAGATGGTTCCACAAGAA 57.404 32.000 0.00 0.00 39.29 2.52
52 53 7.186804 CCATGACGTATTAAAACAGATGGTTC 58.813 38.462 0.00 0.00 39.29 3.62
55 56 5.505654 GGCCATGACGTATTAAAACAGATGG 60.506 44.000 0.00 0.00 0.00 3.51
57 58 5.296780 CAGGCCATGACGTATTAAAACAGAT 59.703 40.000 5.01 0.00 0.00 2.90
58 59 4.634004 CAGGCCATGACGTATTAAAACAGA 59.366 41.667 5.01 0.00 0.00 3.41
60 61 3.127895 GCAGGCCATGACGTATTAAAACA 59.872 43.478 5.01 0.00 0.00 2.83
61 62 3.488553 GGCAGGCCATGACGTATTAAAAC 60.489 47.826 5.01 0.00 35.81 2.43
64 65 1.476110 GGGCAGGCCATGACGTATTAA 60.476 52.381 13.10 0.00 38.10 1.40
67 68 2.510906 GGGCAGGCCATGACGTAT 59.489 61.111 13.10 0.00 38.10 3.06
78 79 0.107017 ATTGGACATCTTCGGGCAGG 60.107 55.000 0.00 0.00 0.00 4.85
82 83 5.049680 CGGTTAATTATTGGACATCTTCGGG 60.050 44.000 0.00 0.00 0.00 5.14
89 90 3.314080 CGTGGCGGTTAATTATTGGACAT 59.686 43.478 0.00 0.00 0.00 3.06
90 91 2.678836 CGTGGCGGTTAATTATTGGACA 59.321 45.455 0.00 0.00 0.00 4.02
91 92 2.032426 CCGTGGCGGTTAATTATTGGAC 59.968 50.000 0.00 0.00 42.73 4.02
92 93 2.290464 CCGTGGCGGTTAATTATTGGA 58.710 47.619 0.00 0.00 42.73 3.53
94 95 1.335496 CCCCGTGGCGGTTAATTATTG 59.665 52.381 6.82 0.00 46.80 1.90
96 97 0.179012 CCCCCGTGGCGGTTAATTAT 60.179 55.000 6.82 0.00 46.80 1.28
117 118 2.498078 GACTAGGAGAACTGGGTTGAGG 59.502 54.545 0.00 0.00 30.80 3.86
121 122 1.558233 CCGACTAGGAGAACTGGGTT 58.442 55.000 0.00 0.00 45.00 4.11
135 136 0.321671 CACCATGTTGTCTCCCGACT 59.678 55.000 0.00 0.00 40.86 4.18
137 138 0.608130 CTCACCATGTTGTCTCCCGA 59.392 55.000 0.00 0.00 0.00 5.14
138 139 0.321671 ACTCACCATGTTGTCTCCCG 59.678 55.000 0.00 0.00 0.00 5.14
145 146 3.711704 ACTAGGGGATACTCACCATGTTG 59.288 47.826 0.00 0.00 44.30 3.33
146 147 3.967987 GACTAGGGGATACTCACCATGTT 59.032 47.826 0.00 0.00 44.30 2.71
159 160 0.415830 TGGTGTCATGGACTAGGGGA 59.584 55.000 0.00 0.00 33.15 4.81
171 172 0.252696 AGGGGCTACTGATGGTGTCA 60.253 55.000 0.00 0.00 35.05 3.58
194 195 2.123589 TGTCCCCAACTTGAAGACAGA 58.876 47.619 0.00 0.00 32.75 3.41
195 196 2.158755 AGTGTCCCCAACTTGAAGACAG 60.159 50.000 0.00 0.00 38.09 3.51
196 197 1.843851 AGTGTCCCCAACTTGAAGACA 59.156 47.619 0.00 8.83 35.20 3.41
214 215 2.817258 CAGTTCAGAAGAGTCGAGGAGT 59.183 50.000 0.00 0.00 0.00 3.85
220 221 4.806247 ACAAAGAACAGTTCAGAAGAGTCG 59.194 41.667 15.85 0.00 0.00 4.18
222 223 5.983540 AGACAAAGAACAGTTCAGAAGAGT 58.016 37.500 15.85 5.05 0.00 3.24
223 224 6.292061 CGAAGACAAAGAACAGTTCAGAAGAG 60.292 42.308 15.85 2.06 0.00 2.85
241 242 1.168407 AAGACCGACGACCGAAGACA 61.168 55.000 0.00 0.00 41.76 3.41
251 252 0.600255 ACCAGCTTTCAAGACCGACG 60.600 55.000 0.00 0.00 0.00 5.12
281 282 0.165727 CTCGAGATCGGAGATGCGAG 59.834 60.000 6.58 13.52 45.12 5.03
284 285 1.132262 GATCCTCGAGATCGGAGATGC 59.868 57.143 15.71 0.00 45.12 3.91
304 305 6.642950 GTGAACTCTTTGGATATACCTCATCG 59.357 42.308 0.00 0.00 39.86 3.84
306 307 7.437713 TGTGAACTCTTTGGATATACCTCAT 57.562 36.000 0.00 0.00 39.86 2.90
313 314 5.118990 CCGACATGTGAACTCTTTGGATAT 58.881 41.667 1.15 0.00 0.00 1.63
319 320 1.202758 TGCCCGACATGTGAACTCTTT 60.203 47.619 1.15 0.00 0.00 2.52
341 342 0.606604 AACTTAAAGCGGCTCCTCGA 59.393 50.000 1.45 0.00 0.00 4.04
342 343 1.000145 GAACTTAAAGCGGCTCCTCG 59.000 55.000 1.45 0.00 0.00 4.63
351 352 4.634443 TGATAAAGGCCGAGAACTTAAAGC 59.366 41.667 0.00 0.00 0.00 3.51
376 377 3.429881 GCTGCAAGAAAATAACAAGGCAC 59.570 43.478 0.00 0.00 34.07 5.01
377 378 3.554752 GGCTGCAAGAAAATAACAAGGCA 60.555 43.478 0.50 0.00 34.07 4.75
398 399 3.976701 ATCCGGCGTTGGAGCTTGG 62.977 63.158 6.01 0.00 42.45 3.61
400 401 2.040544 CAATCCGGCGTTGGAGCTT 61.041 57.895 6.01 0.00 42.45 3.74
414 415 0.169009 GCAACACTTCGGAGGCAATC 59.831 55.000 0.00 0.00 0.00 2.67
416 417 1.153066 TGCAACACTTCGGAGGCAA 60.153 52.632 0.00 0.00 0.00 4.52
422 423 1.507141 GAGGTGGTGCAACACTTCGG 61.507 60.000 32.45 0.00 37.65 4.30
423 424 1.941812 GAGGTGGTGCAACACTTCG 59.058 57.895 32.45 0.00 37.65 3.79
430 431 0.684535 TCAAGATCGAGGTGGTGCAA 59.315 50.000 0.00 0.00 0.00 4.08
447 448 3.329386 GACAATCTACAGCAACAGCTCA 58.671 45.455 0.00 0.00 36.19 4.26
451 452 1.394917 GGCGACAATCTACAGCAACAG 59.605 52.381 0.00 0.00 0.00 3.16
453 454 0.727398 GGGCGACAATCTACAGCAAC 59.273 55.000 0.00 0.00 0.00 4.17
455 456 0.613260 AAGGGCGACAATCTACAGCA 59.387 50.000 0.00 0.00 0.00 4.41
457 458 2.009774 CCAAAGGGCGACAATCTACAG 58.990 52.381 0.00 0.00 0.00 2.74
470 471 2.870035 GCGGAATTTTGTTCCCAAAGGG 60.870 50.000 0.00 0.00 46.11 3.95
472 473 3.104843 TGCGGAATTTTGTTCCCAAAG 57.895 42.857 1.50 0.00 41.37 2.77
473 474 3.462021 CTTGCGGAATTTTGTTCCCAAA 58.538 40.909 0.00 0.00 38.77 3.28
474 475 2.804933 GCTTGCGGAATTTTGTTCCCAA 60.805 45.455 0.00 6.08 35.17 4.12
475 476 1.270041 GCTTGCGGAATTTTGTTCCCA 60.270 47.619 0.00 0.00 35.17 4.37
476 477 1.428448 GCTTGCGGAATTTTGTTCCC 58.572 50.000 0.00 0.00 35.17 3.97
477 478 1.428448 GGCTTGCGGAATTTTGTTCC 58.572 50.000 0.00 0.00 35.27 3.62
478 479 1.059942 CGGCTTGCGGAATTTTGTTC 58.940 50.000 0.00 0.00 0.00 3.18
481 482 0.319469 AACCGGCTTGCGGAATTTTG 60.319 50.000 0.00 0.00 0.00 2.44
484 485 0.606944 TACAACCGGCTTGCGGAATT 60.607 50.000 0.00 0.00 32.41 2.17
485 486 0.606944 TTACAACCGGCTTGCGGAAT 60.607 50.000 0.00 0.00 32.41 3.01
488 489 0.242555 AAATTACAACCGGCTTGCGG 59.757 50.000 0.00 0.00 32.41 5.69
490 491 4.993905 AGAATAAATTACAACCGGCTTGC 58.006 39.130 0.00 0.00 32.41 4.01
515 518 3.386237 AGGTGCACCTCTCTCGGC 61.386 66.667 33.20 4.02 44.77 5.54
517 520 1.214062 GTCAGGTGCACCTCTCTCG 59.786 63.158 35.79 23.35 46.65 4.04
518 521 1.214062 CGTCAGGTGCACCTCTCTC 59.786 63.158 35.79 22.19 46.65 3.20
519 522 2.279069 CCGTCAGGTGCACCTCTCT 61.279 63.158 35.79 13.08 46.65 3.10
520 523 2.262915 CCGTCAGGTGCACCTCTC 59.737 66.667 35.79 26.87 46.65 3.20
521 524 3.314331 CCCGTCAGGTGCACCTCT 61.314 66.667 35.79 14.37 46.65 3.69
530 533 3.495753 GCGGTTTTATATTACCCGTCAGG 59.504 47.826 0.00 0.00 40.70 3.86
531 534 4.210537 CAGCGGTTTTATATTACCCGTCAG 59.789 45.833 0.00 0.00 40.70 3.51
532 535 4.121317 CAGCGGTTTTATATTACCCGTCA 58.879 43.478 0.00 0.00 40.70 4.35
533 536 4.122046 ACAGCGGTTTTATATTACCCGTC 58.878 43.478 0.00 0.00 40.70 4.79
534 537 4.122046 GACAGCGGTTTTATATTACCCGT 58.878 43.478 0.00 0.00 40.70 5.28
535 538 3.495753 GGACAGCGGTTTTATATTACCCG 59.504 47.826 0.00 0.00 41.50 5.28
536 539 3.817084 GGGACAGCGGTTTTATATTACCC 59.183 47.826 0.00 0.00 0.00 3.69
537 540 3.817084 GGGGACAGCGGTTTTATATTACC 59.183 47.826 0.00 0.00 0.00 2.85
538 541 4.453751 TGGGGACAGCGGTTTTATATTAC 58.546 43.478 0.00 0.00 35.01 1.89
539 542 4.774660 TGGGGACAGCGGTTTTATATTA 57.225 40.909 0.00 0.00 35.01 0.98
540 543 3.655615 TGGGGACAGCGGTTTTATATT 57.344 42.857 0.00 0.00 35.01 1.28
553 556 2.285368 CAGGGGCTACTGGGGACA 60.285 66.667 2.46 0.00 34.84 4.02
554 557 2.040606 TCAGGGGCTACTGGGGAC 59.959 66.667 9.27 0.00 38.98 4.46
555 558 2.253656 TCTCAGGGGCTACTGGGGA 61.254 63.158 9.20 6.18 39.47 4.81
556 559 2.066999 GTCTCAGGGGCTACTGGGG 61.067 68.421 9.20 4.39 39.47 4.96
557 560 1.002274 AGTCTCAGGGGCTACTGGG 59.998 63.158 9.27 6.59 40.39 4.45
558 561 0.324738 TGAGTCTCAGGGGCTACTGG 60.325 60.000 0.00 2.32 38.98 4.00
559 562 1.110442 CTGAGTCTCAGGGGCTACTG 58.890 60.000 20.50 3.81 40.71 2.74
560 563 1.003646 TCTGAGTCTCAGGGGCTACT 58.996 55.000 26.16 0.00 44.39 2.57
561 564 2.080654 ATCTGAGTCTCAGGGGCTAC 57.919 55.000 26.16 0.00 44.39 3.58
562 565 2.023984 TCAATCTGAGTCTCAGGGGCTA 60.024 50.000 26.16 9.92 44.39 3.93
563 566 1.202330 CAATCTGAGTCTCAGGGGCT 58.798 55.000 26.16 9.08 44.39 5.19
564 567 1.198713 TCAATCTGAGTCTCAGGGGC 58.801 55.000 26.16 0.00 44.39 5.80
565 568 3.492309 CGAATCAATCTGAGTCTCAGGGG 60.492 52.174 26.16 16.76 44.39 4.79
566 569 3.131933 ACGAATCAATCTGAGTCTCAGGG 59.868 47.826 26.16 17.06 44.39 4.45
567 570 4.111198 CACGAATCAATCTGAGTCTCAGG 58.889 47.826 26.16 12.91 44.39 3.86
568 571 4.991472 TCACGAATCAATCTGAGTCTCAG 58.009 43.478 21.95 21.95 45.59 3.35
569 572 5.391312 TTCACGAATCAATCTGAGTCTCA 57.609 39.130 1.78 1.78 39.13 3.27
570 573 6.900568 ATTTCACGAATCAATCTGAGTCTC 57.099 37.500 3.01 0.00 39.13 3.36
571 574 7.010923 GCTTATTTCACGAATCAATCTGAGTCT 59.989 37.037 3.01 0.00 39.13 3.24
572 575 7.122550 GCTTATTTCACGAATCAATCTGAGTC 58.877 38.462 0.00 0.00 38.04 3.36
573 576 6.037610 GGCTTATTTCACGAATCAATCTGAGT 59.962 38.462 0.00 0.00 0.00 3.41
574 577 6.259608 AGGCTTATTTCACGAATCAATCTGAG 59.740 38.462 0.00 0.00 0.00 3.35
575 578 6.037500 CAGGCTTATTTCACGAATCAATCTGA 59.962 38.462 0.00 0.00 0.00 3.27
576 579 6.037500 TCAGGCTTATTTCACGAATCAATCTG 59.962 38.462 0.00 0.00 0.00 2.90
577 580 6.115446 TCAGGCTTATTTCACGAATCAATCT 58.885 36.000 0.00 0.00 0.00 2.40
578 581 6.363577 TCAGGCTTATTTCACGAATCAATC 57.636 37.500 0.00 0.00 0.00 2.67
579 582 6.599244 TCTTCAGGCTTATTTCACGAATCAAT 59.401 34.615 0.00 0.00 0.00 2.57
580 583 5.937540 TCTTCAGGCTTATTTCACGAATCAA 59.062 36.000 0.00 0.00 0.00 2.57
581 584 5.487433 TCTTCAGGCTTATTTCACGAATCA 58.513 37.500 0.00 0.00 0.00 2.57
582 585 6.258727 TGATCTTCAGGCTTATTTCACGAATC 59.741 38.462 0.00 0.00 0.00 2.52
583 586 6.115446 TGATCTTCAGGCTTATTTCACGAAT 58.885 36.000 0.00 0.00 0.00 3.34
584 587 5.487433 TGATCTTCAGGCTTATTTCACGAA 58.513 37.500 0.00 0.00 0.00 3.85
585 588 5.084818 TGATCTTCAGGCTTATTTCACGA 57.915 39.130 0.00 0.00 0.00 4.35
586 589 5.801350 TTGATCTTCAGGCTTATTTCACG 57.199 39.130 0.00 0.00 0.00 4.35
587 590 7.067981 AGGATTTGATCTTCAGGCTTATTTCAC 59.932 37.037 0.00 0.00 0.00 3.18
588 591 7.121382 AGGATTTGATCTTCAGGCTTATTTCA 58.879 34.615 0.00 0.00 0.00 2.69
589 592 7.579761 AGGATTTGATCTTCAGGCTTATTTC 57.420 36.000 0.00 0.00 0.00 2.17
590 593 7.230309 GCTAGGATTTGATCTTCAGGCTTATTT 59.770 37.037 0.00 0.00 0.00 1.40
591 594 6.714356 GCTAGGATTTGATCTTCAGGCTTATT 59.286 38.462 0.00 0.00 0.00 1.40
592 595 6.044171 AGCTAGGATTTGATCTTCAGGCTTAT 59.956 38.462 0.00 0.00 0.00 1.73
593 596 5.367937 AGCTAGGATTTGATCTTCAGGCTTA 59.632 40.000 0.00 0.00 0.00 3.09
594 597 4.165758 AGCTAGGATTTGATCTTCAGGCTT 59.834 41.667 0.00 0.00 0.00 4.35
595 598 3.715834 AGCTAGGATTTGATCTTCAGGCT 59.284 43.478 0.00 0.00 0.00 4.58
596 599 4.064388 GAGCTAGGATTTGATCTTCAGGC 58.936 47.826 0.00 0.00 0.00 4.85
597 600 4.038522 TCGAGCTAGGATTTGATCTTCAGG 59.961 45.833 0.00 0.00 0.00 3.86
598 601 4.981674 GTCGAGCTAGGATTTGATCTTCAG 59.018 45.833 0.00 0.00 0.00 3.02
599 602 4.402474 TGTCGAGCTAGGATTTGATCTTCA 59.598 41.667 0.00 0.00 0.00 3.02
600 603 4.938080 TGTCGAGCTAGGATTTGATCTTC 58.062 43.478 0.00 0.00 0.00 2.87
601 604 5.344743 TTGTCGAGCTAGGATTTGATCTT 57.655 39.130 0.00 0.00 0.00 2.40
602 605 5.543507 ATTGTCGAGCTAGGATTTGATCT 57.456 39.130 0.00 0.00 0.00 2.75
603 606 8.247562 AGTATATTGTCGAGCTAGGATTTGATC 58.752 37.037 0.00 0.00 0.00 2.92
604 607 8.128322 AGTATATTGTCGAGCTAGGATTTGAT 57.872 34.615 0.00 0.00 0.00 2.57
605 608 7.526142 AGTATATTGTCGAGCTAGGATTTGA 57.474 36.000 0.00 0.00 0.00 2.69
606 609 8.594881 AAAGTATATTGTCGAGCTAGGATTTG 57.405 34.615 0.00 0.00 0.00 2.32
607 610 9.915629 CTAAAGTATATTGTCGAGCTAGGATTT 57.084 33.333 0.00 0.00 0.00 2.17
608 611 8.524487 CCTAAAGTATATTGTCGAGCTAGGATT 58.476 37.037 0.00 0.00 0.00 3.01
609 612 7.889073 TCCTAAAGTATATTGTCGAGCTAGGAT 59.111 37.037 0.00 0.00 29.09 3.24
610 613 7.229308 TCCTAAAGTATATTGTCGAGCTAGGA 58.771 38.462 0.00 0.00 31.09 2.94
611 614 7.450124 TCCTAAAGTATATTGTCGAGCTAGG 57.550 40.000 0.00 0.00 0.00 3.02
612 615 8.350722 TGTTCCTAAAGTATATTGTCGAGCTAG 58.649 37.037 0.00 0.00 0.00 3.42
613 616 8.229253 TGTTCCTAAAGTATATTGTCGAGCTA 57.771 34.615 0.00 0.00 0.00 3.32
614 617 7.108841 TGTTCCTAAAGTATATTGTCGAGCT 57.891 36.000 0.00 0.00 0.00 4.09
615 618 7.948278 ATGTTCCTAAAGTATATTGTCGAGC 57.052 36.000 0.00 0.00 0.00 5.03
621 624 9.825972 CCGCATTTATGTTCCTAAAGTATATTG 57.174 33.333 0.00 0.00 0.00 1.90
622 625 9.569122 ACCGCATTTATGTTCCTAAAGTATATT 57.431 29.630 0.00 0.00 0.00 1.28
623 626 8.999431 CACCGCATTTATGTTCCTAAAGTATAT 58.001 33.333 0.00 0.00 0.00 0.86
624 627 7.988599 ACACCGCATTTATGTTCCTAAAGTATA 59.011 33.333 0.00 0.00 0.00 1.47
625 628 6.826741 ACACCGCATTTATGTTCCTAAAGTAT 59.173 34.615 0.00 0.00 0.00 2.12
626 629 6.092944 CACACCGCATTTATGTTCCTAAAGTA 59.907 38.462 0.00 0.00 0.00 2.24
627 630 5.007682 ACACCGCATTTATGTTCCTAAAGT 58.992 37.500 0.00 0.00 0.00 2.66
628 631 5.331902 CACACCGCATTTATGTTCCTAAAG 58.668 41.667 0.00 0.00 0.00 1.85
629 632 4.380023 GCACACCGCATTTATGTTCCTAAA 60.380 41.667 0.00 0.00 41.79 1.85
630 633 3.127895 GCACACCGCATTTATGTTCCTAA 59.872 43.478 0.00 0.00 41.79 2.69
631 634 2.680841 GCACACCGCATTTATGTTCCTA 59.319 45.455 0.00 0.00 41.79 2.94
632 635 1.472480 GCACACCGCATTTATGTTCCT 59.528 47.619 0.00 0.00 41.79 3.36
633 636 1.908065 GCACACCGCATTTATGTTCC 58.092 50.000 0.00 0.00 41.79 3.62
644 647 1.446272 GAGGACTACTGCACACCGC 60.446 63.158 0.00 0.00 42.89 5.68
645 648 1.154016 CGAGGACTACTGCACACCG 60.154 63.158 0.00 0.00 0.00 4.94
646 649 0.171455 CTCGAGGACTACTGCACACC 59.829 60.000 3.91 0.00 0.00 4.16
647 650 1.135632 GTCTCGAGGACTACTGCACAC 60.136 57.143 13.56 0.00 41.46 3.82
648 651 1.166129 GTCTCGAGGACTACTGCACA 58.834 55.000 13.56 0.00 41.46 4.57
657 660 1.407258 CCCAATCTGAGTCTCGAGGAC 59.593 57.143 13.56 9.58 44.80 3.85
658 661 1.006043 ACCCAATCTGAGTCTCGAGGA 59.994 52.381 13.56 1.23 0.00 3.71
659 662 1.135915 CACCCAATCTGAGTCTCGAGG 59.864 57.143 13.56 0.00 0.00 4.63
660 663 1.470632 GCACCCAATCTGAGTCTCGAG 60.471 57.143 5.93 5.93 0.00 4.04
661 664 0.532573 GCACCCAATCTGAGTCTCGA 59.467 55.000 0.00 0.00 0.00 4.04
662 665 0.247460 TGCACCCAATCTGAGTCTCG 59.753 55.000 0.00 0.00 0.00 4.04
663 666 2.011046 GCTGCACCCAATCTGAGTCTC 61.011 57.143 0.00 0.00 0.00 3.36
664 667 0.035630 GCTGCACCCAATCTGAGTCT 60.036 55.000 0.00 0.00 0.00 3.24
665 668 1.028868 GGCTGCACCCAATCTGAGTC 61.029 60.000 0.50 0.00 0.00 3.36
666 669 1.001641 GGCTGCACCCAATCTGAGT 60.002 57.895 0.50 0.00 0.00 3.41
667 670 1.030488 CAGGCTGCACCCAATCTGAG 61.030 60.000 0.00 0.00 40.58 3.35
668 671 1.001764 CAGGCTGCACCCAATCTGA 60.002 57.895 0.00 0.00 40.58 3.27
669 672 1.001764 TCAGGCTGCACCCAATCTG 60.002 57.895 10.34 0.00 40.58 2.90
670 673 1.001641 GTCAGGCTGCACCCAATCT 60.002 57.895 10.34 0.00 40.58 2.40
671 674 2.048603 GGTCAGGCTGCACCCAATC 61.049 63.158 19.36 0.00 40.58 2.67
672 675 2.036256 GGTCAGGCTGCACCCAAT 59.964 61.111 19.36 0.00 40.58 3.16
673 676 2.769652 GATGGTCAGGCTGCACCCAA 62.770 60.000 24.09 13.07 40.58 4.12
674 677 3.259314 ATGGTCAGGCTGCACCCA 61.259 61.111 24.09 21.42 40.58 4.51
675 678 2.439156 GATGGTCAGGCTGCACCC 60.439 66.667 24.09 17.61 40.58 4.61
676 679 1.626356 TAGGATGGTCAGGCTGCACC 61.626 60.000 21.80 21.80 39.61 5.01
677 680 0.253044 TTAGGATGGTCAGGCTGCAC 59.747 55.000 10.34 8.97 0.00 4.57
678 681 0.991146 TTTAGGATGGTCAGGCTGCA 59.009 50.000 10.34 3.09 0.00 4.41
679 682 2.128771 TTTTAGGATGGTCAGGCTGC 57.871 50.000 10.34 4.94 0.00 5.25
680 683 3.313526 CGATTTTTAGGATGGTCAGGCTG 59.686 47.826 8.58 8.58 0.00 4.85
681 684 3.054361 ACGATTTTTAGGATGGTCAGGCT 60.054 43.478 0.00 0.00 0.00 4.58
682 685 3.279434 ACGATTTTTAGGATGGTCAGGC 58.721 45.455 0.00 0.00 0.00 4.85
683 686 6.992715 AGATTACGATTTTTAGGATGGTCAGG 59.007 38.462 0.00 0.00 0.00 3.86
684 687 8.438676 AAGATTACGATTTTTAGGATGGTCAG 57.561 34.615 0.00 0.00 0.00 3.51
685 688 8.265055 AGAAGATTACGATTTTTAGGATGGTCA 58.735 33.333 0.00 0.00 0.00 4.02
686 689 8.664211 AGAAGATTACGATTTTTAGGATGGTC 57.336 34.615 0.00 0.00 0.00 4.02
687 690 8.265055 TGAGAAGATTACGATTTTTAGGATGGT 58.735 33.333 0.00 0.00 0.00 3.55
688 691 8.662781 TGAGAAGATTACGATTTTTAGGATGG 57.337 34.615 0.00 0.00 0.00 3.51
706 709 9.607988 TGAAGTGTAATACAGTTTTTGAGAAGA 57.392 29.630 13.97 0.00 41.47 2.87
717 720 9.463443 GCAGAAAATTTTGAAGTGTAATACAGT 57.537 29.630 8.47 0.00 32.07 3.55
718 721 9.462174 TGCAGAAAATTTTGAAGTGTAATACAG 57.538 29.630 8.47 0.00 0.00 2.74
719 722 9.979578 ATGCAGAAAATTTTGAAGTGTAATACA 57.020 25.926 8.47 0.00 0.00 2.29
743 746 7.660112 TGGGCTAATGCATTGACTATTTAATG 58.340 34.615 22.27 0.00 41.91 1.90
744 747 7.838079 TGGGCTAATGCATTGACTATTTAAT 57.162 32.000 22.27 0.00 41.91 1.40
745 748 7.559533 TCTTGGGCTAATGCATTGACTATTTAA 59.440 33.333 22.27 6.18 41.91 1.52
746 749 7.059788 TCTTGGGCTAATGCATTGACTATTTA 58.940 34.615 22.27 0.00 41.91 1.40
747 750 5.893255 TCTTGGGCTAATGCATTGACTATTT 59.107 36.000 22.27 0.00 41.91 1.40
748 751 5.448654 TCTTGGGCTAATGCATTGACTATT 58.551 37.500 22.27 0.00 41.91 1.73
749 752 5.052693 TCTTGGGCTAATGCATTGACTAT 57.947 39.130 22.27 0.00 41.91 2.12
750 753 4.502105 TCTTGGGCTAATGCATTGACTA 57.498 40.909 22.27 9.21 41.91 2.59
751 754 3.370840 TCTTGGGCTAATGCATTGACT 57.629 42.857 22.27 0.00 41.91 3.41
752 755 4.660789 AATCTTGGGCTAATGCATTGAC 57.339 40.909 22.27 13.38 41.91 3.18
753 756 5.013568 CAAATCTTGGGCTAATGCATTGA 57.986 39.130 22.27 8.90 41.91 2.57
767 770 3.131577 CCATGTGTCCCATCCAAATCTTG 59.868 47.826 0.00 0.00 0.00 3.02
768 771 3.368248 CCATGTGTCCCATCCAAATCTT 58.632 45.455 0.00 0.00 0.00 2.40
769 772 2.951787 GCCATGTGTCCCATCCAAATCT 60.952 50.000 0.00 0.00 0.00 2.40
770 773 1.410153 GCCATGTGTCCCATCCAAATC 59.590 52.381 0.00 0.00 0.00 2.17
771 774 1.488390 GCCATGTGTCCCATCCAAAT 58.512 50.000 0.00 0.00 0.00 2.32
772 775 0.614415 GGCCATGTGTCCCATCCAAA 60.614 55.000 0.00 0.00 0.00 3.28
773 776 1.000233 GGCCATGTGTCCCATCCAA 60.000 57.895 0.00 0.00 0.00 3.53
774 777 2.682846 GGCCATGTGTCCCATCCA 59.317 61.111 0.00 0.00 0.00 3.41
775 778 2.516930 CGGCCATGTGTCCCATCC 60.517 66.667 2.24 0.00 0.00 3.51
776 779 1.819632 GTCGGCCATGTGTCCCATC 60.820 63.158 2.24 0.00 0.00 3.51
777 780 2.272146 GTCGGCCATGTGTCCCAT 59.728 61.111 2.24 0.00 0.00 4.00
778 781 4.028490 GGTCGGCCATGTGTCCCA 62.028 66.667 0.00 0.00 34.09 4.37
779 782 2.311688 CTAGGTCGGCCATGTGTCCC 62.312 65.000 9.71 0.00 37.19 4.46
780 783 1.144057 CTAGGTCGGCCATGTGTCC 59.856 63.158 9.71 0.00 37.19 4.02
781 784 1.144057 CCTAGGTCGGCCATGTGTC 59.856 63.158 9.71 0.00 37.19 3.67
782 785 0.691078 ATCCTAGGTCGGCCATGTGT 60.691 55.000 9.71 0.00 37.19 3.72
783 786 0.250038 CATCCTAGGTCGGCCATGTG 60.250 60.000 9.71 0.00 37.19 3.21
784 787 1.410850 CCATCCTAGGTCGGCCATGT 61.411 60.000 9.71 0.00 37.19 3.21
785 788 1.372683 CCATCCTAGGTCGGCCATG 59.627 63.158 9.71 2.39 37.19 3.66
786 789 0.190069 TACCATCCTAGGTCGGCCAT 59.810 55.000 9.71 0.00 42.06 4.40
787 790 0.190069 ATACCATCCTAGGTCGGCCA 59.810 55.000 9.71 7.56 42.06 5.36
788 791 0.896226 GATACCATCCTAGGTCGGCC 59.104 60.000 16.39 0.00 42.06 6.13
789 792 1.819903 GAGATACCATCCTAGGTCGGC 59.180 57.143 16.39 3.97 42.06 5.54
790 793 2.041891 AGGAGATACCATCCTAGGTCGG 59.958 54.545 9.08 12.83 45.58 4.79
791 794 3.443145 AGGAGATACCATCCTAGGTCG 57.557 52.381 9.08 0.64 45.58 4.79
798 801 2.011122 TTCCCGAGGAGATACCATCC 57.989 55.000 0.00 0.00 42.04 3.51
799 802 4.625607 AAATTCCCGAGGAGATACCATC 57.374 45.455 0.00 0.00 42.04 3.51
800 803 5.388599 AAAAATTCCCGAGGAGATACCAT 57.611 39.130 0.00 0.00 42.04 3.55
801 804 4.855298 AAAAATTCCCGAGGAGATACCA 57.145 40.909 0.00 0.00 42.04 3.25
823 826 1.202417 TGCGTTCGCCCATTTCAAAAA 60.202 42.857 14.44 0.00 0.00 1.94
824 827 0.385751 TGCGTTCGCCCATTTCAAAA 59.614 45.000 14.44 0.00 0.00 2.44
825 828 0.600557 ATGCGTTCGCCCATTTCAAA 59.399 45.000 14.44 0.00 0.00 2.69
826 829 0.600557 AATGCGTTCGCCCATTTCAA 59.399 45.000 14.44 0.00 0.00 2.69
827 830 0.109365 CAATGCGTTCGCCCATTTCA 60.109 50.000 14.44 0.00 29.71 2.69
828 831 0.109319 ACAATGCGTTCGCCCATTTC 60.109 50.000 14.44 0.00 29.71 2.17
829 832 1.132262 CTACAATGCGTTCGCCCATTT 59.868 47.619 14.44 1.14 29.71 2.32
830 833 0.732571 CTACAATGCGTTCGCCCATT 59.267 50.000 14.44 5.92 32.20 3.16
831 834 0.107897 TCTACAATGCGTTCGCCCAT 60.108 50.000 14.44 0.00 0.00 4.00
832 835 0.320858 TTCTACAATGCGTTCGCCCA 60.321 50.000 14.44 0.00 0.00 5.36
833 836 1.003866 GATTCTACAATGCGTTCGCCC 60.004 52.381 14.44 0.00 0.00 6.13
834 837 1.933853 AGATTCTACAATGCGTTCGCC 59.066 47.619 14.44 0.00 0.00 5.54
835 838 3.345714 CAAGATTCTACAATGCGTTCGC 58.654 45.455 10.34 10.34 0.00 4.70
836 839 3.242413 CCCAAGATTCTACAATGCGTTCG 60.242 47.826 0.00 0.00 0.00 3.95
837 840 3.938963 TCCCAAGATTCTACAATGCGTTC 59.061 43.478 0.00 0.00 0.00 3.95
838 841 3.941483 CTCCCAAGATTCTACAATGCGTT 59.059 43.478 0.00 0.00 0.00 4.84
839 842 3.535561 CTCCCAAGATTCTACAATGCGT 58.464 45.455 0.00 0.00 0.00 5.24
840 843 2.874701 CCTCCCAAGATTCTACAATGCG 59.125 50.000 0.00 0.00 0.00 4.73
841 844 4.133078 CTCCTCCCAAGATTCTACAATGC 58.867 47.826 0.00 0.00 0.00 3.56
842 845 4.133078 GCTCCTCCCAAGATTCTACAATG 58.867 47.826 0.00 0.00 0.00 2.82
843 846 3.782523 TGCTCCTCCCAAGATTCTACAAT 59.217 43.478 0.00 0.00 0.00 2.71
844 847 3.181329 TGCTCCTCCCAAGATTCTACAA 58.819 45.455 0.00 0.00 0.00 2.41
845 848 2.768527 CTGCTCCTCCCAAGATTCTACA 59.231 50.000 0.00 0.00 0.00 2.74
846 849 2.484594 GCTGCTCCTCCCAAGATTCTAC 60.485 54.545 0.00 0.00 0.00 2.59
847 850 1.765314 GCTGCTCCTCCCAAGATTCTA 59.235 52.381 0.00 0.00 0.00 2.10
848 851 0.545646 GCTGCTCCTCCCAAGATTCT 59.454 55.000 0.00 0.00 0.00 2.40
849 852 0.254178 TGCTGCTCCTCCCAAGATTC 59.746 55.000 0.00 0.00 0.00 2.52
850 853 0.255318 CTGCTGCTCCTCCCAAGATT 59.745 55.000 0.00 0.00 0.00 2.40
851 854 1.913722 CTGCTGCTCCTCCCAAGAT 59.086 57.895 0.00 0.00 0.00 2.40
852 855 2.964310 GCTGCTGCTCCTCCCAAGA 61.964 63.158 8.53 0.00 36.03 3.02
853 856 2.438075 GCTGCTGCTCCTCCCAAG 60.438 66.667 8.53 0.00 36.03 3.61
854 857 4.039092 GGCTGCTGCTCCTCCCAA 62.039 66.667 15.64 0.00 39.59 4.12
871 874 2.478335 TTTTAGCTGGGGTGCGAGGG 62.478 60.000 0.00 0.00 38.13 4.30
872 875 1.002624 TTTTAGCTGGGGTGCGAGG 60.003 57.895 0.00 0.00 38.13 4.63
932 940 5.511202 CCTGTTTACTTGTTACGAACCCCTA 60.511 44.000 0.00 0.00 0.00 3.53
1540 1568 0.797579 AAACCCTAGGAGGAGGTGGA 59.202 55.000 11.48 0.00 37.67 4.02
1541 1569 0.912486 CAAACCCTAGGAGGAGGTGG 59.088 60.000 11.48 0.00 37.67 4.61
1542 1570 1.279271 CACAAACCCTAGGAGGAGGTG 59.721 57.143 11.48 8.15 37.67 4.00
1543 1571 1.657804 CACAAACCCTAGGAGGAGGT 58.342 55.000 11.48 0.00 37.67 3.85
1561 1589 1.368345 CGCATCCCGATTCACTTGCA 61.368 55.000 0.00 0.00 40.02 4.08
1564 1592 0.744414 CACCGCATCCCGATTCACTT 60.744 55.000 0.00 0.00 40.02 3.16
1595 1623 2.093816 GGCACCGGTAGTTAAGCTTAGT 60.094 50.000 6.87 1.12 0.00 2.24
1768 1832 2.893637 CGAAGGTAATACACTGCTGCT 58.106 47.619 0.00 0.00 0.00 4.24
1786 1850 5.656480 TCAATCACGATTTGAGATAACCGA 58.344 37.500 0.00 0.00 37.77 4.69
1955 2045 6.142958 GCGATATTTAGCCTTTCAAATTGCTC 59.857 38.462 0.00 0.00 35.34 4.26
1975 2065 3.592898 TCTTGAAGAGCTGTTGCGATA 57.407 42.857 0.00 0.00 45.42 2.92
2011 2101 3.689161 TGGTCAATGCCATCTTTTACGAG 59.311 43.478 0.00 0.00 32.81 4.18
2088 2178 4.098501 CCCTGGAGAAAATAGAATGGCAAC 59.901 45.833 0.00 0.00 0.00 4.17
2170 2260 6.510799 CGAAATACATGAGAGATTTGCCAGAC 60.511 42.308 0.00 0.00 0.00 3.51
2341 2431 6.499699 TCATATGATAGAGCTGATTCTTGGGT 59.500 38.462 0.00 0.00 0.00 4.51
2573 2675 9.188588 TCGTCACTAGAAAAATACAAGTACAAG 57.811 33.333 0.00 0.00 0.00 3.16
2595 2697 3.686726 AGCAGAGGAATTGTTTGATCGTC 59.313 43.478 0.00 0.00 0.00 4.20
2597 2699 4.691860 AAGCAGAGGAATTGTTTGATCG 57.308 40.909 0.00 0.00 0.00 3.69
2768 2875 3.744426 TCTGTAGAAAAGCGCTTAACCAC 59.256 43.478 25.33 18.42 0.00 4.16
2976 3089 3.217681 TCAACAACCCAGTAAGTTCCC 57.782 47.619 0.00 0.00 0.00 3.97
3209 3333 3.721087 AGAGATTGTGGGGTGTAAAGG 57.279 47.619 0.00 0.00 0.00 3.11
3210 3334 4.216257 CACAAGAGATTGTGGGGTGTAAAG 59.784 45.833 12.23 0.00 46.26 1.85
3211 3335 4.141287 CACAAGAGATTGTGGGGTGTAAA 58.859 43.478 12.23 0.00 46.26 2.01
3212 3336 3.750371 CACAAGAGATTGTGGGGTGTAA 58.250 45.455 12.23 0.00 46.26 2.41
3213 3337 3.417069 CACAAGAGATTGTGGGGTGTA 57.583 47.619 12.23 0.00 46.26 2.90
3214 3338 2.276732 CACAAGAGATTGTGGGGTGT 57.723 50.000 12.23 0.00 46.26 4.16
3245 3369 2.165357 TGCTAGCATCCAGAGAAGGA 57.835 50.000 14.93 0.00 43.01 3.36
3267 3391 5.123820 CACAGTTCTCTTCAAAGTTGTTCCA 59.876 40.000 0.00 0.00 0.00 3.53
3348 3472 0.604780 CAGTGCCACCAGAGACCAAG 60.605 60.000 0.00 0.00 0.00 3.61
3354 3478 1.078848 GTAGCCAGTGCCACCAGAG 60.079 63.158 0.00 0.00 38.69 3.35
3358 3482 1.078848 CTCAGTAGCCAGTGCCACC 60.079 63.158 0.00 0.00 38.69 4.61
3359 3483 1.743252 GCTCAGTAGCCAGTGCCAC 60.743 63.158 0.00 0.00 43.40 5.01
3360 3484 2.665000 GCTCAGTAGCCAGTGCCA 59.335 61.111 0.00 0.00 43.40 4.92
3362 3486 3.191539 GCGCTCAGTAGCCAGTGC 61.192 66.667 0.00 0.00 46.68 4.40
3363 3487 1.518133 GAGCGCTCAGTAGCCAGTG 60.518 63.158 31.91 0.00 46.68 3.66
3364 3488 2.888863 GAGCGCTCAGTAGCCAGT 59.111 61.111 31.91 0.00 46.68 4.00
3366 3490 2.064723 GATCGAGCGCTCAGTAGCCA 62.065 60.000 34.69 12.88 46.68 4.75
3368 3492 0.932585 GTGATCGAGCGCTCAGTAGC 60.933 60.000 34.69 22.42 45.86 3.58
3369 3493 0.660488 AGTGATCGAGCGCTCAGTAG 59.340 55.000 34.69 19.68 0.00 2.57
3373 3500 0.179153 CAGAAGTGATCGAGCGCTCA 60.179 55.000 34.69 22.54 0.00 4.26
3378 3505 5.405571 TCAAAGTTAACAGAAGTGATCGAGC 59.594 40.000 8.61 0.00 0.00 5.03
3379 3506 6.400515 GCTCAAAGTTAACAGAAGTGATCGAG 60.401 42.308 8.61 0.70 0.00 4.04
3392 3519 9.222916 GAAGAGTTTTGTTAGCTCAAAGTTAAC 57.777 33.333 0.00 0.00 40.76 2.01
3549 3676 1.279271 ACAGATGGGTAGAGCAACCAC 59.721 52.381 5.42 0.00 41.67 4.16
3551 3678 1.279271 ACACAGATGGGTAGAGCAACC 59.721 52.381 0.00 0.00 38.94 3.77
3570 3698 4.385405 AGCTGAGCACAGGCCGAC 62.385 66.667 13.26 0.00 43.62 4.79
3573 3701 2.436292 CTGAGCTGAGCACAGGCC 60.436 66.667 21.77 0.00 42.02 5.19
3602 3731 2.957680 TCTCCATGTCAAAGCAAAAGCA 59.042 40.909 0.00 0.00 0.00 3.91
3705 3835 1.478510 TCTCATCGAGCAGAGTTTCCC 59.521 52.381 10.82 0.00 33.63 3.97
3799 3929 3.685139 ATACAAGGCATCATACCGGAG 57.315 47.619 9.46 0.00 0.00 4.63
3801 3931 2.736721 CGAATACAAGGCATCATACCGG 59.263 50.000 0.00 0.00 0.00 5.28
3913 6569 1.147153 GCCATCCCTCCACAGCTAC 59.853 63.158 0.00 0.00 0.00 3.58
3950 6606 1.629043 AACTAACGAGACCTCAGCCA 58.371 50.000 0.00 0.00 0.00 4.75
4010 7211 0.040058 TTGGGAAGTGATGCATGGCT 59.960 50.000 2.46 0.00 0.00 4.75
4029 7230 0.881600 GTGTACCGTCGCCCAGTTTT 60.882 55.000 0.00 0.00 0.00 2.43
4030 7231 1.301165 GTGTACCGTCGCCCAGTTT 60.301 57.895 0.00 0.00 0.00 2.66
4031 7232 2.341176 GTGTACCGTCGCCCAGTT 59.659 61.111 0.00 0.00 0.00 3.16
4033 7234 2.718747 TTTGGTGTACCGTCGCCCAG 62.719 60.000 0.00 0.00 39.43 4.45
4077 7282 6.716628 TGATGCAGTCCAGGGATATTTAAATC 59.283 38.462 3.39 0.00 0.00 2.17
4085 7290 4.524802 ATTTTGATGCAGTCCAGGGATA 57.475 40.909 0.00 0.00 0.00 2.59
4086 7291 2.905415 TTTTGATGCAGTCCAGGGAT 57.095 45.000 0.00 0.00 0.00 3.85
4087 7292 2.905415 ATTTTGATGCAGTCCAGGGA 57.095 45.000 0.00 0.00 0.00 4.20
4088 7293 3.571401 GGATATTTTGATGCAGTCCAGGG 59.429 47.826 0.00 0.00 0.00 4.45
4089 7294 3.251729 CGGATATTTTGATGCAGTCCAGG 59.748 47.826 0.00 0.00 0.00 4.45
4090 7295 4.129380 TCGGATATTTTGATGCAGTCCAG 58.871 43.478 0.00 0.00 0.00 3.86
4091 7296 4.149511 TCGGATATTTTGATGCAGTCCA 57.850 40.909 0.00 0.00 0.00 4.02
4092 7297 5.695851 AATCGGATATTTTGATGCAGTCC 57.304 39.130 0.00 0.00 0.00 3.85
4093 7298 9.683069 ATTTAAATCGGATATTTTGATGCAGTC 57.317 29.630 0.00 0.00 0.00 3.51
4108 7313 9.232082 CGCAATTTGAAAGATATTTAAATCGGA 57.768 29.630 3.39 0.00 0.00 4.55
4109 7314 9.232082 TCGCAATTTGAAAGATATTTAAATCGG 57.768 29.630 3.39 0.00 0.00 4.18
4113 7318 8.816144 GGCATCGCAATTTGAAAGATATTTAAA 58.184 29.630 0.00 0.00 0.00 1.52
4114 7319 8.196771 AGGCATCGCAATTTGAAAGATATTTAA 58.803 29.630 0.00 0.00 0.00 1.52
4115 7320 7.715657 AGGCATCGCAATTTGAAAGATATTTA 58.284 30.769 0.00 0.00 0.00 1.40
4116 7321 6.576185 AGGCATCGCAATTTGAAAGATATTT 58.424 32.000 0.00 0.00 0.00 1.40
4117 7322 6.152932 AGGCATCGCAATTTGAAAGATATT 57.847 33.333 0.00 0.00 0.00 1.28
4118 7323 5.300034 TGAGGCATCGCAATTTGAAAGATAT 59.700 36.000 0.00 0.00 0.00 1.63
4125 7330 2.112380 TCTGAGGCATCGCAATTTGA 57.888 45.000 0.00 0.00 0.00 2.69
4177 7383 1.068816 GGTGCCACCACGATGTTTAAC 60.069 52.381 9.55 0.00 43.00 2.01
4181 7387 1.302511 GAGGTGCCACCACGATGTT 60.303 57.895 17.80 0.00 41.95 2.71
4238 7444 0.706433 ACATTTCCCCACTCTGCCAT 59.294 50.000 0.00 0.00 0.00 4.40
4239 7445 1.367346 TACATTTCCCCACTCTGCCA 58.633 50.000 0.00 0.00 0.00 4.92
4295 7691 3.985279 TTCTTACAAGACACGAATCACGG 59.015 43.478 0.00 0.00 39.57 4.94
4296 7692 5.363517 GTTTCTTACAAGACACGAATCACG 58.636 41.667 0.00 0.00 40.46 4.35
4297 7693 5.333875 GGGTTTCTTACAAGACACGAATCAC 60.334 44.000 0.00 0.00 36.76 3.06
4298 7694 4.753107 GGGTTTCTTACAAGACACGAATCA 59.247 41.667 0.00 0.00 36.76 2.57
4299 7695 4.143179 CGGGTTTCTTACAAGACACGAATC 60.143 45.833 0.50 0.00 36.76 2.52
4300 7696 3.744426 CGGGTTTCTTACAAGACACGAAT 59.256 43.478 0.50 0.00 36.76 3.34
4301 7697 3.125316 CGGGTTTCTTACAAGACACGAA 58.875 45.455 0.50 0.00 36.76 3.85
4309 7705 0.891904 GCTGGCCGGGTTTCTTACAA 60.892 55.000 15.02 0.00 0.00 2.41
4357 7767 7.038659 TCCAAATAAAAACTGAACAAGTGGTG 58.961 34.615 0.00 0.00 39.81 4.17
4460 7874 2.775219 ACCCAAACCCACCTCCGT 60.775 61.111 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.