AutoCloner

Multiple sequence alignment - TraesCS7B01G282600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G282600	chr7B	100.000	2246	0	0	1	2246	516828387	516830632	0.000000e+00	4148
1	TraesCS7B01G282600	chr7B	96.774	186	6	0	1	186	516820693	516820878	6.020000e-81	311
2	TraesCS7B01G282600	chr7B	89.231	195	12	8	1	187	641107997	641108190	3.730000e-58	235
3	TraesCS7B01G282600	chr7B	91.228	171	11	4	1	168	641129334	641129503	1.740000e-56	230
4	TraesCS7B01G282600	chr6D	98.014	2064	28	6	187	2246	124501914	124503968	0.000000e+00	3572
5	TraesCS7B01G282600	chrUn	97.770	2063	31	7	187	2246	206783044	206785094	0.000000e+00	3541
6	TraesCS7B01G282600	chr4D	97.723	2064	30	7	187	2246	123319869	123321919	0.000000e+00	3535
7	TraesCS7B01G282600	chr5A	97.527	2062	40	6	187	2246	238848170	238846118	0.000000e+00	3515
8	TraesCS7B01G282600	chr7A	97.527	2062	36	7	187	2246	60263699	60265747	0.000000e+00	3511
9	TraesCS7B01G282600	chr7A	97.236	2062	45	6	187	2246	46421311	46423362	0.000000e+00	3482
10	TraesCS7B01G282600	chr7A	96.507	2061	52	9	187	2246	120856744	120854703	0.000000e+00	3389
11	TraesCS7B01G282600	chr7A	86.559	186	17	8	1	186	550669239	550669062	4.890000e-47	198
12	TraesCS7B01G282600	chr2B	97.431	2063	37	4	187	2246	391092466	391090417	0.000000e+00	3502
13	TraesCS7B01G282600	chr2B	97.196	1248	29	1	999	2246	112826235	112827476	0.000000e+00	2106
14	TraesCS7B01G282600	chr3D	97.043	2063	48	6	187	2246	523767729	523769781	0.000000e+00	3459
15	TraesCS7B01G282600	chr2D	96.520	2069	57	7	187	2246	39501522	39503584	0.000000e+00	3408
16	TraesCS7B01G282600	chr2D	87.778	180	14	7	1	179	144745753	144745925	1.050000e-48	204
17	TraesCS7B01G282600	chr2D	86.702	188	15	8	1	185	552484609	552484789	1.360000e-47	200
18	TraesCS7B01G282600	chr6A	96.361	2061	67	6	187	2246	280555636	280553583	0.000000e+00	3384
19	TraesCS7B01G282600	chr7D	98.118	1435	20	2	812	2246	203485007	203486434	0.000000e+00	2494
20	TraesCS7B01G282600	chr4B	90.052	191	15	4	1	191	142495907	142495721	6.200000e-61	244
21	TraesCS7B01G282600	chr4B	90.052	191	15	4	1	191	522825525	522825339	6.200000e-61	244
22	TraesCS7B01G282600	chr4B	89.143	175	15	4	9	183	522817667	522817497	4.860000e-52	215

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G282600	chr7B	516828387	516830632	2245	False	4148	4148	100.000	1	2246	1	chr7B.!!$F2	2245
1	TraesCS7B01G282600	chr6D	124501914	124503968	2054	False	3572	3572	98.014	187	2246	1	chr6D.!!$F1	2059
2	TraesCS7B01G282600	chrUn	206783044	206785094	2050	False	3541	3541	97.770	187	2246	1	chrUn.!!$F1	2059
3	TraesCS7B01G282600	chr4D	123319869	123321919	2050	False	3535	3535	97.723	187	2246	1	chr4D.!!$F1	2059
4	TraesCS7B01G282600	chr5A	238846118	238848170	2052	True	3515	3515	97.527	187	2246	1	chr5A.!!$R1	2059
5	TraesCS7B01G282600	chr7A	60263699	60265747	2048	False	3511	3511	97.527	187	2246	1	chr7A.!!$F2	2059
6	TraesCS7B01G282600	chr7A	46421311	46423362	2051	False	3482	3482	97.236	187	2246	1	chr7A.!!$F1	2059
7	TraesCS7B01G282600	chr7A	120854703	120856744	2041	True	3389	3389	96.507	187	2246	1	chr7A.!!$R1	2059
8	TraesCS7B01G282600	chr2B	391090417	391092466	2049	True	3502	3502	97.431	187	2246	1	chr2B.!!$R1	2059
9	TraesCS7B01G282600	chr2B	112826235	112827476	1241	False	2106	2106	97.196	999	2246	1	chr2B.!!$F1	1247
10	TraesCS7B01G282600	chr3D	523767729	523769781	2052	False	3459	3459	97.043	187	2246	1	chr3D.!!$F1	2059
11	TraesCS7B01G282600	chr2D	39501522	39503584	2062	False	3408	3408	96.520	187	2246	1	chr2D.!!$F1	2059
12	TraesCS7B01G282600	chr6A	280553583	280555636	2053	True	3384	3384	96.361	187	2246	1	chr6A.!!$R1	2059
13	TraesCS7B01G282600	chr7D	203485007	203486434	1427	False	2494	2494	98.118	812	2246	1	chr7D.!!$F1	1434

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
703	712	0.106149	ATTAGTAAGCGGCCCTTCGG	59.894	55.0	9.46	0.0	34.95	4.3	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1699	1710	6.662865	TCAAGTAAGAAAATGCATTCCCAA	57.337	33.333	13.38	0.0	0.0	4.12	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	4.379243	CTGGCCTGAAGCGGTCGT	62.379	66.667	3.32	0.00	45.17	4.34
18	19	4.373116	TGGCCTGAAGCGGTCGTC	62.373	66.667	3.32	0.00	45.17	4.20
20	21	4.070552	GCCTGAAGCGGTCGTCCT	62.071	66.667	0.00	0.00	0.00	3.85
21	22	2.182030	CCTGAAGCGGTCGTCCTC	59.818	66.667	0.00	0.00	0.00	3.71
22	23	2.636412	CCTGAAGCGGTCGTCCTCA	61.636	63.158	0.00	0.00	0.00	3.86
23	24	1.289066	CTGAAGCGGTCGTCCTCAA	59.711	57.895	0.00	0.00	0.00	3.02
24	25	1.006571	TGAAGCGGTCGTCCTCAAC	60.007	57.895	0.00	0.00	0.00	3.18
25	26	1.737008	GAAGCGGTCGTCCTCAACC	60.737	63.158	0.00	0.00	0.00	3.77
26	27	2.156051	GAAGCGGTCGTCCTCAACCT	62.156	60.000	0.00	0.00	33.14	3.50
27	28	2.126031	GCGGTCGTCCTCAACCTC	60.126	66.667	0.00	0.00	33.14	3.85
28	29	2.637383	GCGGTCGTCCTCAACCTCT	61.637	63.158	0.00	0.00	33.14	3.69
29	30	1.213013	CGGTCGTCCTCAACCTCTG	59.787	63.158	0.00	0.00	33.14	3.35
30	31	1.079750	GGTCGTCCTCAACCTCTGC	60.080	63.158	0.00	0.00	32.54	4.26
31	32	1.079750	GTCGTCCTCAACCTCTGCC	60.080	63.158	0.00	0.00	0.00	4.85
32	33	1.533033	TCGTCCTCAACCTCTGCCA	60.533	57.895	0.00	0.00	0.00	4.92
33	34	1.079543	CGTCCTCAACCTCTGCCAG	60.080	63.158	0.00	0.00	0.00	4.85
34	35	1.821061	CGTCCTCAACCTCTGCCAGT	61.821	60.000	0.00	0.00	0.00	4.00
35	36	1.267121	GTCCTCAACCTCTGCCAGTA	58.733	55.000	0.00	0.00	0.00	2.74
36	37	1.205893	GTCCTCAACCTCTGCCAGTAG	59.794	57.143	0.00	0.00	0.00	2.57
37	38	0.539051	CCTCAACCTCTGCCAGTAGG	59.461	60.000	8.19	8.19	38.93	3.18
47	48	2.185350	CCAGTAGGCAGAGGCGTG	59.815	66.667	0.00	0.00	42.47	5.34
48	49	2.650116	CCAGTAGGCAGAGGCGTGT	61.650	63.158	0.00	0.00	42.47	4.49
49	50	1.153745	CAGTAGGCAGAGGCGTGTC	60.154	63.158	0.00	0.00	42.47	3.67
50	51	2.202623	GTAGGCAGAGGCGTGTCG	60.203	66.667	0.00	0.00	42.47	4.35
84	85	3.090532	CCCCTGGCCACCTCCTAC	61.091	72.222	0.00	0.00	0.00	3.18
85	86	3.090532	CCCTGGCCACCTCCTACC	61.091	72.222	0.00	0.00	0.00	3.18
86	87	2.041265	CCTGGCCACCTCCTACCT	59.959	66.667	0.00	0.00	0.00	3.08
87	88	2.370445	CCTGGCCACCTCCTACCTG	61.370	68.421	0.00	0.00	0.00	4.00
88	89	3.009115	TGGCCACCTCCTACCTGC	61.009	66.667	0.00	0.00	0.00	4.85
89	90	3.798511	GGCCACCTCCTACCTGCC	61.799	72.222	0.00	0.00	0.00	4.85
90	91	2.689034	GCCACCTCCTACCTGCCT	60.689	66.667	0.00	0.00	0.00	4.75
91	92	3.036429	GCCACCTCCTACCTGCCTG	62.036	68.421	0.00	0.00	0.00	4.85
92	93	2.586792	CACCTCCTACCTGCCTGC	59.413	66.667	0.00	0.00	0.00	4.85
93	94	2.689034	ACCTCCTACCTGCCTGCC	60.689	66.667	0.00	0.00	0.00	4.85
94	95	3.854669	CCTCCTACCTGCCTGCCG	61.855	72.222	0.00	0.00	0.00	5.69
95	96	4.537433	CTCCTACCTGCCTGCCGC	62.537	72.222	0.00	0.00	38.31	6.53
97	98	4.101448	CCTACCTGCCTGCCGCTT	62.101	66.667	0.00	0.00	38.78	4.68
98	99	2.512515	CTACCTGCCTGCCGCTTC	60.513	66.667	0.00	0.00	38.78	3.86
99	100	4.096003	TACCTGCCTGCCGCTTCC	62.096	66.667	0.00	0.00	38.78	3.46
110	111	4.514577	CGCTTCCCCGATGCGTCT	62.515	66.667	12.25	0.00	46.21	4.18
111	112	2.892425	GCTTCCCCGATGCGTCTG	60.892	66.667	4.05	0.00	0.00	3.51
112	113	2.202932	CTTCCCCGATGCGTCTGG	60.203	66.667	9.33	9.33	0.00	3.86
113	114	2.682136	TTCCCCGATGCGTCTGGA	60.682	61.111	17.29	13.05	30.85	3.86
114	115	2.907897	CTTCCCCGATGCGTCTGGAC	62.908	65.000	17.29	0.00	30.85	4.02
124	125	3.188786	GTCTGGACGATGCCACGC	61.189	66.667	0.00	0.00	36.70	5.34
125	126	4.794439	TCTGGACGATGCCACGCG	62.794	66.667	3.53	3.53	36.70	6.01
141	142	3.402681	CGCCACCATGGTCCCTCT	61.403	66.667	16.53	0.00	40.46	3.69
142	143	2.592308	GCCACCATGGTCCCTCTC	59.408	66.667	16.53	0.00	40.46	3.20
143	144	1.997874	GCCACCATGGTCCCTCTCT	60.998	63.158	16.53	0.00	40.46	3.10
144	145	1.977293	GCCACCATGGTCCCTCTCTC	61.977	65.000	16.53	0.00	40.46	3.20
145	146	1.341156	CCACCATGGTCCCTCTCTCC	61.341	65.000	16.53	0.00	31.35	3.71
146	147	1.003573	ACCATGGTCCCTCTCTCCC	59.996	63.158	13.00	0.00	0.00	4.30
147	148	1.003442	CCATGGTCCCTCTCTCCCA	59.997	63.158	2.57	0.00	0.00	4.37
148	149	1.341156	CCATGGTCCCTCTCTCCCAC	61.341	65.000	2.57	0.00	0.00	4.61
149	150	1.381872	ATGGTCCCTCTCTCCCACG	60.382	63.158	0.00	0.00	0.00	4.94
150	151	3.462678	GGTCCCTCTCTCCCACGC	61.463	72.222	0.00	0.00	0.00	5.34
151	152	3.462678	GTCCCTCTCTCCCACGCC	61.463	72.222	0.00	0.00	0.00	5.68
152	153	4.779733	TCCCTCTCTCCCACGCCC	62.780	72.222	0.00	0.00	0.00	6.13
153	154	4.787280	CCCTCTCTCCCACGCCCT	62.787	72.222	0.00	0.00	0.00	5.19
154	155	3.151022	CCTCTCTCCCACGCCCTC	61.151	72.222	0.00	0.00	0.00	4.30
155	156	3.522731	CTCTCTCCCACGCCCTCG	61.523	72.222	0.00	0.00	42.43	4.63
163	164	4.200283	CACGCCCTCGCTCCTCTC	62.200	72.222	0.00	0.00	39.84	3.20
166	167	4.851214	GCCCTCGCTCCTCTCCCT	62.851	72.222	0.00	0.00	0.00	4.20
167	168	2.520741	CCCTCGCTCCTCTCCCTC	60.521	72.222	0.00	0.00	0.00	4.30
168	169	2.277072	CCTCGCTCCTCTCCCTCA	59.723	66.667	0.00	0.00	0.00	3.86
169	170	2.124693	CCTCGCTCCTCTCCCTCAC	61.125	68.421	0.00	0.00	0.00	3.51
170	171	2.043852	TCGCTCCTCTCCCTCACC	60.044	66.667	0.00	0.00	0.00	4.02
171	172	3.151022	CGCTCCTCTCCCTCACCC	61.151	72.222	0.00	0.00	0.00	4.61
172	173	2.366570	GCTCCTCTCCCTCACCCT	59.633	66.667	0.00	0.00	0.00	4.34
173	174	1.760480	GCTCCTCTCCCTCACCCTC	60.760	68.421	0.00	0.00	0.00	4.30
174	175	2.015081	CTCCTCTCCCTCACCCTCT	58.985	63.158	0.00	0.00	0.00	3.69
175	176	0.396974	CTCCTCTCCCTCACCCTCTG	60.397	65.000	0.00	0.00	0.00	3.35
176	177	2.063378	CCTCTCCCTCACCCTCTGC	61.063	68.421	0.00	0.00	0.00	4.26
177	178	1.001503	CTCTCCCTCACCCTCTGCT	59.998	63.158	0.00	0.00	0.00	4.24
178	179	1.000993	TCTCCCTCACCCTCTGCTC	59.999	63.158	0.00	0.00	0.00	4.26
179	180	1.001503	CTCCCTCACCCTCTGCTCT	59.998	63.158	0.00	0.00	0.00	4.09
180	181	1.000993	TCCCTCACCCTCTGCTCTC	59.999	63.158	0.00	0.00	0.00	3.20
181	182	1.001503	CCCTCACCCTCTGCTCTCT	59.998	63.158	0.00	0.00	0.00	3.10
182	183	1.042559	CCCTCACCCTCTGCTCTCTC	61.043	65.000	0.00	0.00	0.00	3.20
183	184	1.042559	CCTCACCCTCTGCTCTCTCC	61.043	65.000	0.00	0.00	0.00	3.71
184	185	1.000993	TCACCCTCTGCTCTCTCCC	59.999	63.158	0.00	0.00	0.00	4.30
185	186	1.001503	CACCCTCTGCTCTCTCCCT	59.998	63.158	0.00	0.00	0.00	4.20
432	441	1.411612	CCTTTTAGATCTACGGGCCGT	59.588	52.381	35.91	35.91	44.35	5.68
497	506	2.512896	CCCTGGCAGGATAGGTGC	59.487	66.667	34.84	0.00	37.67	5.01
696	705	3.060602	CTCTTGCCTATTAGTAAGCGGC	58.939	50.000	15.02	15.02	41.06	6.53
703	712	0.106149	ATTAGTAAGCGGCCCTTCGG	59.894	55.000	9.46	0.00	34.95	4.30
864	874	4.712829	TCGACCCAACCTTATGAGTATTCA	59.287	41.667	0.00	0.00	37.81	2.57
1015	1025	8.028652	TCATCTATGTATGATTGTAACACCCA	57.971	34.615	0.00	0.00	30.92	4.51
1134	1144	5.780793	AGAAGGAGTTTACTATGGTCAGTGT	59.219	40.000	0.00	0.00	0.00	3.55
1197	1207	4.686554	GTCGTAGAAGCAGTGACTTTGAAT	59.313	41.667	0.00	0.00	39.69	2.57
1278	1288	2.819019	TGAAGCGGAAATGCAATTCTCA	59.181	40.909	13.98	7.19	33.67	3.27
1401	1411	4.284746	GGTGAGGCCTTACTATATGAGCTT	59.715	45.833	25.35	0.00	0.00	3.74
1699	1710	4.982241	TCTTCACCTTTTCCTCAGACAT	57.018	40.909	0.00	0.00	0.00	3.06
1865	1876	7.858052	AAATGAAAGAGAGTTTGTATTTGCG	57.142	32.000	0.00	0.00	0.00	4.85
2090	2101	0.548510	GAATGGGGTTCTCTCTGGGG	59.451	60.000	0.00	0.00	33.89	4.96
2091	2102	0.921256	AATGGGGTTCTCTCTGGGGG	60.921	60.000	0.00	0.00	0.00	5.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	4.379243	ACGACCGCTTCAGGCCAG	62.379	66.667	5.01	0.00	37.74	4.85
1	2	4.373116	GACGACCGCTTCAGGCCA	62.373	66.667	5.01	0.00	37.74	5.36
3	4	3.991536	GAGGACGACCGCTTCAGGC	62.992	68.421	0.00	0.00	41.83	4.85
4	5	2.154798	TTGAGGACGACCGCTTCAGG	62.155	60.000	9.19	0.00	41.83	3.86
5	6	1.009389	GTTGAGGACGACCGCTTCAG	61.009	60.000	9.19	0.00	41.83	3.02
6	7	1.006571	GTTGAGGACGACCGCTTCA	60.007	57.895	9.19	0.00	41.83	3.02
7	8	1.737008	GGTTGAGGACGACCGCTTC	60.737	63.158	9.19	2.31	40.28	3.86
8	9	2.342648	GGTTGAGGACGACCGCTT	59.657	61.111	9.19	0.00	40.28	4.68
13	14	1.079750	GGCAGAGGTTGAGGACGAC	60.080	63.158	0.00	0.00	0.00	4.34
14	15	1.533033	TGGCAGAGGTTGAGGACGA	60.533	57.895	0.00	0.00	0.00	4.20
15	16	1.079543	CTGGCAGAGGTTGAGGACG	60.080	63.158	9.42	0.00	0.00	4.79
16	17	1.205893	CTACTGGCAGAGGTTGAGGAC	59.794	57.143	23.66	0.00	0.00	3.85
17	18	1.561643	CTACTGGCAGAGGTTGAGGA	58.438	55.000	23.66	0.00	0.00	3.71
18	19	0.539051	CCTACTGGCAGAGGTTGAGG	59.461	60.000	23.66	12.72	0.00	3.86
30	31	2.185350	CACGCCTCTGCCTACTGG	59.815	66.667	0.00	0.00	0.00	4.00
31	32	1.153745	GACACGCCTCTGCCTACTG	60.154	63.158	0.00	0.00	0.00	2.74
32	33	2.701780	CGACACGCCTCTGCCTACT	61.702	63.158	0.00	0.00	0.00	2.57
33	34	2.202623	CGACACGCCTCTGCCTAC	60.203	66.667	0.00	0.00	0.00	3.18
67	68	3.090532	GTAGGAGGTGGCCAGGGG	61.091	72.222	5.11	0.00	0.00	4.79
68	69	3.090532	GGTAGGAGGTGGCCAGGG	61.091	72.222	5.11	0.00	0.00	4.45
69	70	2.041265	AGGTAGGAGGTGGCCAGG	59.959	66.667	5.11	0.00	0.00	4.45
70	71	3.036429	GCAGGTAGGAGGTGGCCAG	62.036	68.421	5.11	0.00	0.00	4.85
71	72	3.009115	GCAGGTAGGAGGTGGCCA	61.009	66.667	0.00	0.00	0.00	5.36
72	73	3.798511	GGCAGGTAGGAGGTGGCC	61.799	72.222	0.00	0.00	0.00	5.36
73	74	2.689034	AGGCAGGTAGGAGGTGGC	60.689	66.667	0.00	0.00	37.03	5.01
74	75	3.036429	GCAGGCAGGTAGGAGGTGG	62.036	68.421	0.00	0.00	0.00	4.61
75	76	2.586792	GCAGGCAGGTAGGAGGTG	59.413	66.667	0.00	0.00	0.00	4.00
76	77	2.689034	GGCAGGCAGGTAGGAGGT	60.689	66.667	0.00	0.00	0.00	3.85
77	78	3.854669	CGGCAGGCAGGTAGGAGG	61.855	72.222	0.00	0.00	0.00	4.30
78	79	4.537433	GCGGCAGGCAGGTAGGAG	62.537	72.222	0.00	0.00	42.87	3.69
94	95	2.892425	CAGACGCATCGGGGAAGC	60.892	66.667	0.00	0.00	0.00	3.86
95	96	2.202932	CCAGACGCATCGGGGAAG	60.203	66.667	0.00	0.00	36.60	3.46
96	97	2.682136	TCCAGACGCATCGGGGAA	60.682	61.111	0.00	0.00	40.40	3.97
97	98	3.458163	GTCCAGACGCATCGGGGA	61.458	66.667	0.00	0.00	40.40	4.81
107	108	3.188786	GCGTGGCATCGTCCAGAC	61.189	66.667	10.30	0.00	36.67	3.51
108	109	4.794439	CGCGTGGCATCGTCCAGA	62.794	66.667	0.00	0.00	36.67	3.86
124	125	3.391665	GAGAGGGACCATGGTGGCG	62.392	68.421	25.52	0.00	42.67	5.69
125	126	1.977293	GAGAGAGGGACCATGGTGGC	61.977	65.000	25.52	8.83	42.67	5.01
126	127	1.341156	GGAGAGAGGGACCATGGTGG	61.341	65.000	25.52	0.00	45.02	4.61
127	128	1.341156	GGGAGAGAGGGACCATGGTG	61.341	65.000	25.52	0.00	0.00	4.17
128	129	1.003573	GGGAGAGAGGGACCATGGT	59.996	63.158	19.89	19.89	0.00	3.55
129	130	1.003442	TGGGAGAGAGGGACCATGG	59.997	63.158	11.19	11.19	0.00	3.66
130	131	1.680522	CGTGGGAGAGAGGGACCATG	61.681	65.000	0.00	0.00	35.13	3.66
131	132	1.381872	CGTGGGAGAGAGGGACCAT	60.382	63.158	0.00	0.00	35.13	3.55
132	133	2.037367	CGTGGGAGAGAGGGACCA	59.963	66.667	0.00	0.00	0.00	4.02
133	134	3.462678	GCGTGGGAGAGAGGGACC	61.463	72.222	0.00	0.00	0.00	4.46
134	135	3.462678	GGCGTGGGAGAGAGGGAC	61.463	72.222	0.00	0.00	0.00	4.46
135	136	4.779733	GGGCGTGGGAGAGAGGGA	62.780	72.222	0.00	0.00	0.00	4.20
136	137	4.787280	AGGGCGTGGGAGAGAGGG	62.787	72.222	0.00	0.00	0.00	4.30
137	138	3.151022	GAGGGCGTGGGAGAGAGG	61.151	72.222	0.00	0.00	0.00	3.69
138	139	3.522731	CGAGGGCGTGGGAGAGAG	61.523	72.222	0.00	0.00	0.00	3.20
146	147	4.200283	GAGAGGAGCGAGGGCGTG	62.200	72.222	0.00	0.00	46.35	5.34
149	150	4.851214	AGGGAGAGGAGCGAGGGC	62.851	72.222	0.00	0.00	40.37	5.19
150	151	2.520741	GAGGGAGAGGAGCGAGGG	60.521	72.222	0.00	0.00	0.00	4.30
151	152	2.124693	GTGAGGGAGAGGAGCGAGG	61.125	68.421	0.00	0.00	0.00	4.63
152	153	2.124693	GGTGAGGGAGAGGAGCGAG	61.125	68.421	0.00	0.00	0.00	5.03
153	154	2.043852	GGTGAGGGAGAGGAGCGA	60.044	66.667	0.00	0.00	0.00	4.93
154	155	3.151022	GGGTGAGGGAGAGGAGCG	61.151	72.222	0.00	0.00	0.00	5.03
155	156	1.760480	GAGGGTGAGGGAGAGGAGC	60.760	68.421	0.00	0.00	0.00	4.70
156	157	0.396974	CAGAGGGTGAGGGAGAGGAG	60.397	65.000	0.00	0.00	0.00	3.69
157	158	1.700368	CAGAGGGTGAGGGAGAGGA	59.300	63.158	0.00	0.00	0.00	3.71
158	159	2.063378	GCAGAGGGTGAGGGAGAGG	61.063	68.421	0.00	0.00	0.00	3.69
159	160	1.001503	AGCAGAGGGTGAGGGAGAG	59.998	63.158	0.00	0.00	0.00	3.20
160	161	1.000993	GAGCAGAGGGTGAGGGAGA	59.999	63.158	0.00	0.00	0.00	3.71
161	162	1.001503	AGAGCAGAGGGTGAGGGAG	59.998	63.158	0.00	0.00	0.00	4.30
162	163	1.000993	GAGAGCAGAGGGTGAGGGA	59.999	63.158	0.00	0.00	0.00	4.20
163	164	1.001503	AGAGAGCAGAGGGTGAGGG	59.998	63.158	0.00	0.00	0.00	4.30
164	165	1.042559	GGAGAGAGCAGAGGGTGAGG	61.043	65.000	0.00	0.00	0.00	3.86
165	166	1.042559	GGGAGAGAGCAGAGGGTGAG	61.043	65.000	0.00	0.00	0.00	3.51
166	167	1.000993	GGGAGAGAGCAGAGGGTGA	59.999	63.158	0.00	0.00	0.00	4.02
167	168	1.001503	AGGGAGAGAGCAGAGGGTG	59.998	63.158	0.00	0.00	0.00	4.61
168	169	1.001503	CAGGGAGAGAGCAGAGGGT	59.998	63.158	0.00	0.00	0.00	4.34
169	170	0.325110	TTCAGGGAGAGAGCAGAGGG	60.325	60.000	0.00	0.00	0.00	4.30
170	171	1.113788	CTTCAGGGAGAGAGCAGAGG	58.886	60.000	0.00	0.00	0.00	3.69
171	172	0.461135	GCTTCAGGGAGAGAGCAGAG	59.539	60.000	0.00	0.00	33.43	3.35
172	173	0.251967	TGCTTCAGGGAGAGAGCAGA	60.252	55.000	0.00	0.00	36.30	4.26
173	174	0.612229	TTGCTTCAGGGAGAGAGCAG	59.388	55.000	0.00	0.00	39.64	4.24
174	175	0.612229	CTTGCTTCAGGGAGAGAGCA	59.388	55.000	0.00	0.00	38.05	4.26
175	176	0.107752	CCTTGCTTCAGGGAGAGAGC	60.108	60.000	0.00	0.00	31.89	4.09
183	184	0.036010	ACGACATCCCTTGCTTCAGG	60.036	55.000	0.00	0.00	0.00	3.86
184	185	1.081892	CACGACATCCCTTGCTTCAG	58.918	55.000	0.00	0.00	0.00	3.02
185	186	0.684535	TCACGACATCCCTTGCTTCA	59.315	50.000	0.00	0.00	0.00	3.02
432	441	1.138859	CCCTATGCTCATGTGAACGGA	59.861	52.381	0.00	0.00	0.00	4.69
497	506	4.645762	TCAGATCTCAAGAGTGATTCCG	57.354	45.455	0.00	0.00	31.85	4.30
703	712	1.079612	CGTAAGACCCCGGTGGAAC	60.080	63.158	15.08	8.75	43.02	3.62
1015	1025	3.134804	GCCCAACTATGAGGTACATCAGT	59.865	47.826	16.18	6.49	40.07	3.41
1134	1144	6.769134	TGATTAGTTCCACGAATCTCACTA	57.231	37.500	10.03	0.00	39.78	2.74
1197	1207	3.950397	GGATACCCAATCCGCATAATCA	58.050	45.455	0.00	0.00	44.89	2.57
1278	1288	1.229984	CTTCCCCCTTCCCTCACCT	60.230	63.158	0.00	0.00	0.00	4.00
1356	1366	5.941788	CCCTACTTCAATAAGGGCTTATGT	58.058	41.667	0.00	0.00	43.47	2.29
1401	1411	1.067364	TCGTTCCGTGCTTGACTTACA	59.933	47.619	0.00	0.00	0.00	2.41
1483	1493	2.626266	ACCATCATGCATGCCTATGTTG	59.374	45.455	22.25	16.61	36.65	3.33
1699	1710	6.662865	TCAAGTAAGAAAATGCATTCCCAA	57.337	33.333	13.38	0.00	0.00	4.12

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.