Multiple sequence alignment - TraesCS7B01G282400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G282400 chr7B 100.000 4102 0 0 583 4684 516790922 516795023 0.000000e+00 7576.0
1 TraesCS7B01G282400 chr7B 100.000 168 0 0 1 168 516790340 516790507 1.270000e-80 311.0
2 TraesCS7B01G282400 chr7B 93.443 183 9 3 1416 1597 614279985 614279805 7.730000e-68 268.0
3 TraesCS7B01G282400 chr7B 87.640 89 8 2 21 108 72605042 72605128 2.980000e-17 100.0
4 TraesCS7B01G282400 chr7D 86.775 1293 114 41 1593 2869 488545690 488546941 0.000000e+00 1387.0
5 TraesCS7B01G282400 chr7D 91.156 848 52 13 583 1425 488544854 488545683 0.000000e+00 1129.0
6 TraesCS7B01G282400 chr7D 89.031 547 46 13 3373 3909 488546946 488547488 0.000000e+00 665.0
7 TraesCS7B01G282400 chr7D 90.606 330 29 1 4290 4617 488550690 488551019 2.000000e-118 436.0
8 TraesCS7B01G282400 chr7D 95.906 171 7 0 1422 1592 121683128 121683298 1.280000e-70 278.0
9 TraesCS7B01G282400 chr7A 90.633 758 45 9 3924 4680 555939980 555940712 0.000000e+00 983.0
10 TraesCS7B01G282400 chr7A 90.053 754 61 12 2124 2869 555938521 555939268 0.000000e+00 965.0
11 TraesCS7B01G282400 chr7A 86.682 856 91 14 583 1425 555937204 555938049 0.000000e+00 928.0
12 TraesCS7B01G282400 chr7A 89.907 535 43 10 3373 3899 555939273 555939804 0.000000e+00 678.0
13 TraesCS7B01G282400 chr7A 83.750 80 10 3 28 107 439570738 439570662 6.500000e-09 73.1
14 TraesCS7B01G282400 chr5A 91.322 484 32 6 2877 3353 487792703 487792223 0.000000e+00 652.0
15 TraesCS7B01G282400 chr6B 90.890 483 35 6 2876 3353 523190983 523191461 1.420000e-179 640.0
16 TraesCS7B01G282400 chr6B 95.402 174 7 1 1415 1588 229680954 229680782 4.620000e-70 276.0
17 TraesCS7B01G282400 chr2D 89.431 492 43 6 2878 3368 634834343 634834826 3.100000e-171 612.0
18 TraesCS7B01G282400 chr5B 89.691 485 41 7 2874 3353 334873181 334873661 1.110000e-170 610.0
19 TraesCS7B01G282400 chr1A 90.850 459 34 6 2877 3333 517103372 517102920 4.010000e-170 608.0
20 TraesCS7B01G282400 chr1B 88.400 500 51 4 2874 3368 264852703 264853200 3.120000e-166 595.0
21 TraesCS7B01G282400 chr1B 89.130 460 44 4 2877 3333 568969701 568969245 6.800000e-158 568.0
22 TraesCS7B01G282400 chr5D 88.525 488 44 10 2874 3353 293372291 293372774 8.740000e-162 580.0
23 TraesCS7B01G282400 chr4B 86.460 517 46 10 2876 3368 232111266 232111782 3.190000e-151 545.0
24 TraesCS7B01G282400 chr4B 86.517 89 11 1 21 109 515148016 515147929 3.860000e-16 97.1
25 TraesCS7B01G282400 chr3D 97.041 169 5 0 1424 1592 95816222 95816054 7.670000e-73 285.0
26 TraesCS7B01G282400 chr3D 95.455 176 7 1 1413 1587 486424961 486424786 3.570000e-71 279.0
27 TraesCS7B01G282400 chr1D 96.471 170 6 0 1423 1592 160451658 160451489 9.920000e-72 281.0
28 TraesCS7B01G282400 chrUn 97.546 163 4 0 1424 1586 115107902 115108064 3.570000e-71 279.0
29 TraesCS7B01G282400 chr3A 94.972 179 8 1 1420 1597 731100881 731100703 3.570000e-71 279.0
30 TraesCS7B01G282400 chr6D 95.930 172 6 1 1416 1586 266777470 266777641 1.280000e-70 278.0
31 TraesCS7B01G282400 chr2B 87.640 89 10 1 21 108 463366731 463366819 8.290000e-18 102.0
32 TraesCS7B01G282400 chr3B 90.541 74 7 0 22 95 659598263 659598336 1.070000e-16 99.0
33 TraesCS7B01G282400 chr3B 88.525 61 7 0 22 82 788717619 788717679 1.810000e-09 75.0
34 TraesCS7B01G282400 chr3B 79.817 109 14 5 1 108 769598375 769598274 6.500000e-09 73.1
35 TraesCS7B01G282400 chr3B 82.558 86 12 2 22 107 788206754 788206836 6.500000e-09 73.1
36 TraesCS7B01G282400 chr2A 89.394 66 7 0 42 107 713144268 713144333 3.000000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G282400 chr7B 516790340 516795023 4683 False 3943.50 7576 100.00000 1 4684 2 chr7B.!!$F2 4683
1 TraesCS7B01G282400 chr7D 488544854 488551019 6165 False 904.25 1387 89.39200 583 4617 4 chr7D.!!$F2 4034
2 TraesCS7B01G282400 chr7A 555937204 555940712 3508 False 888.50 983 89.31875 583 4680 4 chr7A.!!$F1 4097
3 TraesCS7B01G282400 chr4B 232111266 232111782 516 False 545.00 545 86.46000 2876 3368 1 chr4B.!!$F1 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 983 1.072806 AGTCTGAACTGCATGCCTTGA 59.927 47.619 16.68 0.0 33.32 3.02 F
1329 1339 0.465460 GCCACCTCAGTTCCAACACA 60.465 55.000 0.00 0.0 0.00 3.72 F
2290 2312 0.107165 GGCAGTCCCCACCTGAATAC 60.107 60.000 0.00 0.0 31.38 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2053 0.101759 GGAATACAGCCGTACAGCGA 59.898 55.0 0.0 0.0 44.77 4.93 R
2610 2638 0.320683 CTGGACCGCTGAACATCACA 60.321 55.0 0.0 0.0 0.00 3.58 R
3949 4160 0.397564 TGATCAAGCCAGACAGTGCA 59.602 50.0 0.0 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.225682 AGGTGGTCTAGAAATTAGAAATATGGA 57.774 33.333 0.00 0.00 0.00 3.41
127 128 7.838771 AAAAAGTACTCGTATATTGGACACC 57.161 36.000 0.00 0.00 0.00 4.16
128 129 6.534475 AAAGTACTCGTATATTGGACACCA 57.466 37.500 0.00 0.00 0.00 4.17
129 130 5.769484 AGTACTCGTATATTGGACACCAG 57.231 43.478 0.00 0.00 33.81 4.00
130 131 3.454371 ACTCGTATATTGGACACCAGC 57.546 47.619 0.00 0.00 33.81 4.85
131 132 2.764010 ACTCGTATATTGGACACCAGCA 59.236 45.455 0.00 0.00 33.81 4.41
132 133 3.388024 ACTCGTATATTGGACACCAGCAT 59.612 43.478 0.00 0.00 33.81 3.79
133 134 4.141711 ACTCGTATATTGGACACCAGCATT 60.142 41.667 0.00 0.00 33.81 3.56
134 135 4.776349 TCGTATATTGGACACCAGCATTT 58.224 39.130 0.00 0.00 33.81 2.32
135 136 5.189928 TCGTATATTGGACACCAGCATTTT 58.810 37.500 0.00 0.00 33.81 1.82
136 137 5.065859 TCGTATATTGGACACCAGCATTTTG 59.934 40.000 0.00 0.00 33.81 2.44
137 138 5.065859 CGTATATTGGACACCAGCATTTTGA 59.934 40.000 0.00 0.00 33.81 2.69
138 139 3.947910 ATTGGACACCAGCATTTTGAG 57.052 42.857 0.00 0.00 33.81 3.02
139 140 2.655090 TGGACACCAGCATTTTGAGA 57.345 45.000 0.00 0.00 0.00 3.27
140 141 2.942804 TGGACACCAGCATTTTGAGAA 58.057 42.857 0.00 0.00 0.00 2.87
141 142 3.295093 TGGACACCAGCATTTTGAGAAA 58.705 40.909 0.00 0.00 0.00 2.52
142 143 3.703556 TGGACACCAGCATTTTGAGAAAA 59.296 39.130 0.00 0.00 34.41 2.29
143 144 4.161189 TGGACACCAGCATTTTGAGAAAAA 59.839 37.500 0.00 0.00 33.47 1.94
616 617 6.095720 ACTTGTTCTACATGTACTCCTCTAGC 59.904 42.308 0.08 0.00 35.13 3.42
619 620 4.633175 TCTACATGTACTCCTCTAGCGAG 58.367 47.826 0.08 5.40 37.01 5.03
665 666 1.203441 AAGTGCTGCAGAGGGGATGA 61.203 55.000 20.43 0.00 0.00 2.92
746 747 5.177326 GTGACAGATCTGAGCAAGATTTCT 58.823 41.667 29.27 1.45 46.12 2.52
871 872 6.183360 ACCATAGTTGTTACTGCAATCGAATG 60.183 38.462 0.00 0.00 35.78 2.67
890 891 1.314730 GGAAGCCGGTTTCTGTTCAA 58.685 50.000 27.30 0.00 0.00 2.69
904 905 2.161855 TGTTCAAGGATGCTTTGCGAT 58.838 42.857 0.00 0.00 0.00 4.58
905 906 3.342719 TGTTCAAGGATGCTTTGCGATA 58.657 40.909 0.00 0.00 0.00 2.92
911 912 2.171448 AGGATGCTTTGCGATAGAGGTT 59.829 45.455 0.00 0.00 39.76 3.50
982 983 1.072806 AGTCTGAACTGCATGCCTTGA 59.927 47.619 16.68 0.00 33.32 3.02
1005 1006 3.127895 TGTGTAATTAATTCAGGTGCCGC 59.872 43.478 3.39 0.00 0.00 6.53
1206 1207 2.502295 AGAAGCTTCTTCAACAGCCTG 58.498 47.619 23.49 0.00 36.62 4.85
1228 1229 6.657966 CCTGGTGAAGTATATGACGAGGTATA 59.342 42.308 0.00 0.00 31.58 1.47
1230 1239 8.051901 TGGTGAAGTATATGACGAGGTATATG 57.948 38.462 0.00 0.00 0.00 1.78
1242 1251 6.370442 TGACGAGGTATATGTTGTTTTGAAGG 59.630 38.462 0.00 0.00 0.00 3.46
1247 1256 6.042143 GGTATATGTTGTTTTGAAGGCATGG 58.958 40.000 0.00 0.00 0.00 3.66
1248 1257 5.999205 ATATGTTGTTTTGAAGGCATGGA 57.001 34.783 0.00 0.00 0.00 3.41
1249 1258 4.686191 ATGTTGTTTTGAAGGCATGGAA 57.314 36.364 0.00 0.00 0.00 3.53
1250 1259 4.478206 TGTTGTTTTGAAGGCATGGAAA 57.522 36.364 0.00 0.00 0.00 3.13
1256 1265 6.118170 TGTTTTGAAGGCATGGAAATTTTGA 58.882 32.000 0.00 0.00 0.00 2.69
1258 1267 7.284944 TGTTTTGAAGGCATGGAAATTTTGATT 59.715 29.630 0.00 0.00 0.00 2.57
1261 1270 9.517868 TTTGAAGGCATGGAAATTTTGATTTAT 57.482 25.926 0.00 0.00 0.00 1.40
1262 1271 8.495361 TGAAGGCATGGAAATTTTGATTTATG 57.505 30.769 0.00 0.00 0.00 1.90
1263 1272 6.930667 AGGCATGGAAATTTTGATTTATGC 57.069 33.333 9.49 9.49 35.96 3.14
1264 1273 6.655930 AGGCATGGAAATTTTGATTTATGCT 58.344 32.000 14.36 4.25 36.49 3.79
1265 1274 7.794041 AGGCATGGAAATTTTGATTTATGCTA 58.206 30.769 14.36 0.00 36.49 3.49
1266 1275 7.712205 AGGCATGGAAATTTTGATTTATGCTAC 59.288 33.333 14.36 4.82 36.49 3.58
1267 1276 7.041848 GGCATGGAAATTTTGATTTATGCTACC 60.042 37.037 14.36 0.00 36.49 3.18
1268 1277 7.712205 GCATGGAAATTTTGATTTATGCTACCT 59.288 33.333 10.25 0.00 34.83 3.08
1269 1278 9.252962 CATGGAAATTTTGATTTATGCTACCTC 57.747 33.333 0.00 0.00 0.00 3.85
1270 1279 8.359875 TGGAAATTTTGATTTATGCTACCTCA 57.640 30.769 0.00 0.00 0.00 3.86
1271 1280 8.811017 TGGAAATTTTGATTTATGCTACCTCAA 58.189 29.630 0.00 0.00 0.00 3.02
1272 1281 9.651913 GGAAATTTTGATTTATGCTACCTCAAA 57.348 29.630 0.00 0.00 34.87 2.69
1275 1284 9.995003 AATTTTGATTTATGCTACCTCAAAACA 57.005 25.926 10.01 0.00 44.14 2.83
1276 1285 9.995003 ATTTTGATTTATGCTACCTCAAAACAA 57.005 25.926 10.01 0.00 44.14 2.83
1277 1286 9.995003 TTTTGATTTATGCTACCTCAAAACAAT 57.005 25.926 5.03 0.00 39.55 2.71
1278 1287 8.984891 TTGATTTATGCTACCTCAAAACAATG 57.015 30.769 0.00 0.00 0.00 2.82
1279 1288 7.035004 TGATTTATGCTACCTCAAAACAATGC 58.965 34.615 0.00 0.00 0.00 3.56
1281 1290 2.591923 TGCTACCTCAAAACAATGCCA 58.408 42.857 0.00 0.00 0.00 4.92
1282 1291 2.295909 TGCTACCTCAAAACAATGCCAC 59.704 45.455 0.00 0.00 0.00 5.01
1283 1292 2.558359 GCTACCTCAAAACAATGCCACT 59.442 45.455 0.00 0.00 0.00 4.00
1284 1293 3.612479 GCTACCTCAAAACAATGCCACTG 60.612 47.826 0.00 0.00 0.00 3.66
1285 1294 2.665165 ACCTCAAAACAATGCCACTGA 58.335 42.857 0.00 0.00 0.00 3.41
1286 1295 2.362077 ACCTCAAAACAATGCCACTGAC 59.638 45.455 0.00 0.00 0.00 3.51
1288 1297 3.181477 CCTCAAAACAATGCCACTGACAA 60.181 43.478 0.00 0.00 0.00 3.18
1289 1298 4.501915 CCTCAAAACAATGCCACTGACAAT 60.502 41.667 0.00 0.00 0.00 2.71
1290 1299 5.278907 CCTCAAAACAATGCCACTGACAATA 60.279 40.000 0.00 0.00 0.00 1.90
1291 1300 6.343716 TCAAAACAATGCCACTGACAATAT 57.656 33.333 0.00 0.00 0.00 1.28
1296 1306 3.668141 ATGCCACTGACAATATTGGGA 57.332 42.857 19.37 2.97 33.55 4.37
1303 1313 6.654582 GCCACTGACAATATTGGGAAAATTTT 59.345 34.615 19.37 2.28 0.00 1.82
1318 1328 7.038017 TGGGAAAATTTTATTAATGCCACCTCA 60.038 33.333 2.75 0.00 0.00 3.86
1326 1336 1.620822 AATGCCACCTCAGTTCCAAC 58.379 50.000 0.00 0.00 0.00 3.77
1329 1339 0.465460 GCCACCTCAGTTCCAACACA 60.465 55.000 0.00 0.00 0.00 3.72
1334 1344 4.396166 CCACCTCAGTTCCAACACATAATC 59.604 45.833 0.00 0.00 0.00 1.75
1335 1345 5.248640 CACCTCAGTTCCAACACATAATCT 58.751 41.667 0.00 0.00 0.00 2.40
1360 1371 7.754069 TGAGCTAAATTTGTTTGTTCAGTTG 57.246 32.000 0.00 0.00 0.00 3.16
1376 1388 6.072508 TGTTCAGTTGCTTGGTATGAGAAATC 60.073 38.462 0.00 0.00 0.00 2.17
1407 1420 6.509418 TTTCTGAAAACTGCACACTTTAGT 57.491 33.333 0.00 0.00 0.00 2.24
1408 1421 7.618502 TTTCTGAAAACTGCACACTTTAGTA 57.381 32.000 0.00 0.00 0.00 1.82
1409 1422 6.844696 TCTGAAAACTGCACACTTTAGTAG 57.155 37.500 0.00 0.00 0.00 2.57
1411 1424 4.274950 TGAAAACTGCACACTTTAGTAGGC 59.725 41.667 0.00 0.00 0.00 3.93
1425 1438 9.680315 CACTTTAGTAGGCAGAGTTGTATATAC 57.320 37.037 5.89 5.89 0.00 1.47
1426 1439 9.643735 ACTTTAGTAGGCAGAGTTGTATATACT 57.356 33.333 13.89 0.00 0.00 2.12
1428 1441 8.632906 TTAGTAGGCAGAGTTGTATATACTCC 57.367 38.462 13.89 4.64 42.35 3.85
1429 1442 6.011481 AGTAGGCAGAGTTGTATATACTCCC 58.989 44.000 13.89 3.51 42.35 4.30
1430 1443 5.081315 AGGCAGAGTTGTATATACTCCCT 57.919 43.478 13.89 6.80 42.35 4.20
1431 1444 5.081032 AGGCAGAGTTGTATATACTCCCTC 58.919 45.833 13.89 14.07 42.35 4.30
1432 1445 4.221041 GGCAGAGTTGTATATACTCCCTCC 59.779 50.000 13.89 3.59 42.35 4.30
1433 1446 4.082679 GCAGAGTTGTATATACTCCCTCCG 60.083 50.000 13.89 9.22 42.35 4.63
1434 1447 5.071370 CAGAGTTGTATATACTCCCTCCGT 58.929 45.833 13.89 0.48 42.35 4.69
1435 1448 5.535406 CAGAGTTGTATATACTCCCTCCGTT 59.465 44.000 13.89 0.00 42.35 4.44
1436 1449 5.769162 AGAGTTGTATATACTCCCTCCGTTC 59.231 44.000 13.89 0.93 42.35 3.95
1437 1450 4.831710 AGTTGTATATACTCCCTCCGTTCC 59.168 45.833 13.89 0.00 0.00 3.62
1438 1451 4.736611 TGTATATACTCCCTCCGTTCCT 57.263 45.455 13.89 0.00 0.00 3.36
1439 1452 5.848286 TGTATATACTCCCTCCGTTCCTA 57.152 43.478 13.89 0.00 0.00 2.94
1440 1453 6.204852 TGTATATACTCCCTCCGTTCCTAA 57.795 41.667 13.89 0.00 0.00 2.69
1441 1454 6.613699 TGTATATACTCCCTCCGTTCCTAAA 58.386 40.000 13.89 0.00 0.00 1.85
1442 1455 7.243824 TGTATATACTCCCTCCGTTCCTAAAT 58.756 38.462 13.89 0.00 0.00 1.40
1443 1456 8.393259 TGTATATACTCCCTCCGTTCCTAAATA 58.607 37.037 13.89 0.00 0.00 1.40
1444 1457 9.418839 GTATATACTCCCTCCGTTCCTAAATAT 57.581 37.037 5.58 0.00 0.00 1.28
1447 1460 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1448 1461 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1449 1462 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1450 1463 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1451 1464 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1452 1465 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1453 1466 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1454 1467 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1470 1483 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
1471 1484 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
1472 1485 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
1473 1486 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
1474 1487 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
1475 1488 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
1476 1489 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
1477 1490 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
1478 1491 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
1479 1492 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
1480 1493 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
1481 1494 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
1482 1495 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
1483 1496 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
1484 1497 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
1486 1499 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
1487 1500 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
1488 1501 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
1489 1502 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
1490 1503 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
1491 1504 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
1492 1505 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
1493 1506 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
1494 1507 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
1495 1508 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
1496 1509 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
1497 1510 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
1498 1511 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
1499 1512 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
1500 1513 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
1504 1517 9.944376 ACGGATGTATATAGATGCATTTTAAGT 57.056 29.630 11.19 0.00 38.38 2.24
1526 1539 8.538409 AAGTGTAAATTCATTCATTTTGCTCC 57.462 30.769 0.00 0.00 0.00 4.70
1527 1540 6.808212 AGTGTAAATTCATTCATTTTGCTCCG 59.192 34.615 0.00 0.00 0.00 4.63
1528 1541 6.586082 GTGTAAATTCATTCATTTTGCTCCGT 59.414 34.615 0.00 0.00 0.00 4.69
1529 1542 7.753132 GTGTAAATTCATTCATTTTGCTCCGTA 59.247 33.333 0.00 0.00 0.00 4.02
1530 1543 8.465999 TGTAAATTCATTCATTTTGCTCCGTAT 58.534 29.630 0.00 0.00 0.00 3.06
1531 1544 7.760131 AAATTCATTCATTTTGCTCCGTATG 57.240 32.000 0.00 0.00 0.00 2.39
1532 1545 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
1533 1546 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
1534 1547 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
1535 1548 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
1536 1549 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
1537 1550 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
1538 1551 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1539 1552 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
1540 1553 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
1541 1554 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
1542 1555 2.092267 TGCTCCGTATGTAGTCCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
1543 1556 2.553172 GCTCCGTATGTAGTCCACCTAG 59.447 54.545 0.00 0.00 0.00 3.02
1544 1557 3.818180 CTCCGTATGTAGTCCACCTAGT 58.182 50.000 0.00 0.00 0.00 2.57
1545 1558 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
1558 1571 4.837093 CACCTAGTGGAATCCCTACAAA 57.163 45.455 0.00 0.00 37.04 2.83
1559 1572 4.770795 CACCTAGTGGAATCCCTACAAAG 58.229 47.826 0.00 0.00 37.04 2.77
1560 1573 4.469945 CACCTAGTGGAATCCCTACAAAGA 59.530 45.833 0.00 0.00 37.04 2.52
1561 1574 4.470304 ACCTAGTGGAATCCCTACAAAGAC 59.530 45.833 0.00 0.00 37.04 3.01
1562 1575 4.717280 CCTAGTGGAATCCCTACAAAGACT 59.283 45.833 0.00 0.00 34.57 3.24
1563 1576 5.189934 CCTAGTGGAATCCCTACAAAGACTT 59.810 44.000 0.00 0.00 34.57 3.01
1564 1577 6.383147 CCTAGTGGAATCCCTACAAAGACTTA 59.617 42.308 0.00 0.00 34.57 2.24
1565 1578 6.893020 AGTGGAATCCCTACAAAGACTTAT 57.107 37.500 0.00 0.00 0.00 1.73
1566 1579 7.989947 AGTGGAATCCCTACAAAGACTTATA 57.010 36.000 0.00 0.00 0.00 0.98
1567 1580 8.568617 AGTGGAATCCCTACAAAGACTTATAT 57.431 34.615 0.00 0.00 0.00 0.86
1568 1581 9.004231 AGTGGAATCCCTACAAAGACTTATATT 57.996 33.333 0.00 0.00 0.00 1.28
1569 1582 9.628500 GTGGAATCCCTACAAAGACTTATATTT 57.372 33.333 0.00 0.00 0.00 1.40
1576 1589 9.257651 CCCTACAAAGACTTATATTTAGGAACG 57.742 37.037 0.00 0.00 0.00 3.95
1577 1590 9.257651 CCTACAAAGACTTATATTTAGGAACGG 57.742 37.037 0.00 0.00 0.00 4.44
1579 1592 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1580 1593 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1581 1594 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
1582 1595 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
1583 1596 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
1584 1597 7.564292 AGACTTATATTTAGGAACGGAGGAAGT 59.436 37.037 0.00 0.00 0.00 3.01
1585 1598 8.773033 ACTTATATTTAGGAACGGAGGAAGTA 57.227 34.615 0.00 0.00 0.00 2.24
1586 1599 9.377238 ACTTATATTTAGGAACGGAGGAAGTAT 57.623 33.333 0.00 0.00 0.00 2.12
1590 1603 7.850935 ATTTAGGAACGGAGGAAGTATATGA 57.149 36.000 0.00 0.00 0.00 2.15
1591 1604 7.850935 TTTAGGAACGGAGGAAGTATATGAT 57.149 36.000 0.00 0.00 0.00 2.45
1608 1621 8.205512 AGTATATGATGGAGATCAGATGATTGC 58.794 37.037 0.00 0.00 40.13 3.56
1634 1647 3.499338 TGTGGCAATGGTTCAGAGAATT 58.501 40.909 0.00 0.00 0.00 2.17
1648 1662 8.567948 GGTTCAGAGAATTTGTGATGTTTAGAA 58.432 33.333 0.00 0.00 0.00 2.10
1675 1689 6.170506 ACAAATCTCTTGGTTATAACGAGCA 58.829 36.000 9.46 0.00 0.00 4.26
1680 1694 7.072177 TCTCTTGGTTATAACGAGCAATTTG 57.928 36.000 9.46 0.00 34.42 2.32
1690 1704 4.228912 ACGAGCAATTTGGAAAAGACAG 57.771 40.909 0.00 0.00 0.00 3.51
1691 1705 2.982470 CGAGCAATTTGGAAAAGACAGC 59.018 45.455 0.00 0.00 0.00 4.40
1699 1713 5.596836 TTTGGAAAAGACAGCTGTTCATT 57.403 34.783 22.65 15.48 39.67 2.57
1721 1735 6.515272 TTTCATGGTTCAGAGAAATTAGGC 57.485 37.500 0.00 0.00 0.00 3.93
1734 1748 5.602628 AGAAATTAGGCGATTAGGAGTGTC 58.397 41.667 0.00 0.00 0.00 3.67
1748 1762 2.485814 GGAGTGTCCTGTGAAGAATTGC 59.514 50.000 0.00 0.00 32.53 3.56
1752 1766 3.058639 GTGTCCTGTGAAGAATTGCACTC 60.059 47.826 0.00 0.00 36.05 3.51
1772 1786 4.636206 ACTCGGTGCTTAGGATTCATTTTC 59.364 41.667 0.00 0.00 0.00 2.29
1910 1928 7.811117 AACAGGCAATTTACTTACAGTACAA 57.189 32.000 0.00 0.00 28.93 2.41
1911 1929 7.435068 ACAGGCAATTTACTTACAGTACAAG 57.565 36.000 0.00 0.00 28.93 3.16
1912 1930 6.996282 ACAGGCAATTTACTTACAGTACAAGT 59.004 34.615 0.00 0.00 39.50 3.16
1913 1931 7.501225 ACAGGCAATTTACTTACAGTACAAGTT 59.499 33.333 2.75 0.00 37.42 2.66
1914 1932 8.015658 CAGGCAATTTACTTACAGTACAAGTTC 58.984 37.037 2.75 0.00 37.42 3.01
1915 1933 7.174426 AGGCAATTTACTTACAGTACAAGTTCC 59.826 37.037 2.75 0.00 37.42 3.62
1916 1934 7.040961 GGCAATTTACTTACAGTACAAGTTCCA 60.041 37.037 2.75 0.00 37.42 3.53
1918 1936 9.659830 CAATTTACTTACAGTACAAGTTCCAAC 57.340 33.333 2.75 0.00 37.42 3.77
1922 1940 6.885922 ACTTACAGTACAAGTTCCAACTTCT 58.114 36.000 1.52 0.00 45.65 2.85
1932 1950 6.127026 ACAAGTTCCAACTTCTAACTCAGTCT 60.127 38.462 1.52 0.00 45.65 3.24
1938 1956 8.423906 TCCAACTTCTAACTCAGTCTTCTATT 57.576 34.615 0.00 0.00 0.00 1.73
1940 1958 8.091449 CCAACTTCTAACTCAGTCTTCTATTGT 58.909 37.037 0.00 0.00 0.00 2.71
1949 1967 9.778741 AACTCAGTCTTCTATTGTAAATCAACA 57.221 29.630 0.00 0.00 38.97 3.33
1950 1968 9.950496 ACTCAGTCTTCTATTGTAAATCAACAT 57.050 29.630 0.00 0.00 38.97 2.71
2032 2052 8.886719 CATTTAAGACATATTCTCAGCTCACAA 58.113 33.333 0.00 0.00 31.02 3.33
2033 2053 9.624373 ATTTAAGACATATTCTCAGCTCACAAT 57.376 29.630 0.00 0.00 31.02 2.71
2045 2065 0.458543 CTCACAATCGCTGTACGGCT 60.459 55.000 23.76 3.71 43.89 5.52
2051 2071 2.135664 ATCGCTGTACGGCTGTATTC 57.864 50.000 23.76 0.00 43.89 1.75
2055 2075 1.806623 GCTGTACGGCTGTATTCCCAG 60.807 57.143 19.72 12.04 32.11 4.45
2069 2089 0.613260 TCCCAGATGACCAACCTTCG 59.387 55.000 0.00 0.00 0.00 3.79
2073 2093 2.549992 CCAGATGACCAACCTTCGTCAA 60.550 50.000 0.00 0.00 42.02 3.18
2075 2095 3.563808 CAGATGACCAACCTTCGTCAAAA 59.436 43.478 0.00 0.00 42.02 2.44
2082 2102 3.314080 CCAACCTTCGTCAAAACTGCTTA 59.686 43.478 0.00 0.00 0.00 3.09
2083 2103 4.201970 CCAACCTTCGTCAAAACTGCTTAA 60.202 41.667 0.00 0.00 0.00 1.85
2115 2135 0.535780 CTTTCTCACCACAGCCAGCA 60.536 55.000 0.00 0.00 0.00 4.41
2118 2138 1.964891 CTCACCACAGCCAGCACAG 60.965 63.158 0.00 0.00 0.00 3.66
2120 2140 1.526686 CACCACAGCCAGCACAGAA 60.527 57.895 0.00 0.00 0.00 3.02
2122 2142 1.228063 CCACAGCCAGCACAGAACT 60.228 57.895 0.00 0.00 0.00 3.01
2194 2215 3.016031 CAGTAAGCATGCCCACATTACA 58.984 45.455 21.76 0.00 32.87 2.41
2224 2246 3.855689 AATTGGACATTTCTTGGCTCG 57.144 42.857 0.00 0.00 32.03 5.03
2238 2260 2.587522 TGGCTCGTAGTCTCATAGCAT 58.412 47.619 0.00 0.00 34.85 3.79
2244 2266 6.090088 GGCTCGTAGTCTCATAGCATATTTTG 59.910 42.308 0.00 0.00 34.85 2.44
2253 2275 8.233190 GTCTCATAGCATATTTTGTAGGCAATC 58.767 37.037 0.00 0.00 34.18 2.67
2264 2286 1.134788 GTAGGCAATCGCTAGGTGTGT 60.135 52.381 0.00 0.00 38.60 3.72
2267 2289 0.443869 GCAATCGCTAGGTGTGTGTG 59.556 55.000 0.00 0.00 34.30 3.82
2290 2312 0.107165 GGCAGTCCCCACCTGAATAC 60.107 60.000 0.00 0.00 31.38 1.89
2291 2313 0.618458 GCAGTCCCCACCTGAATACA 59.382 55.000 0.00 0.00 31.38 2.29
2303 2325 4.853196 CACCTGAATACATTGCTCAAAACG 59.147 41.667 0.00 0.00 0.00 3.60
2304 2326 4.759693 ACCTGAATACATTGCTCAAAACGA 59.240 37.500 0.00 0.00 0.00 3.85
2305 2327 5.415701 ACCTGAATACATTGCTCAAAACGAT 59.584 36.000 0.00 0.00 0.00 3.73
2306 2328 5.967674 CCTGAATACATTGCTCAAAACGATC 59.032 40.000 0.00 0.00 0.00 3.69
2307 2329 5.879237 TGAATACATTGCTCAAAACGATCC 58.121 37.500 0.00 0.00 0.00 3.36
2344 2367 5.454755 GCTAGGTATTCCTGCCAAGACATAA 60.455 44.000 0.22 0.00 44.81 1.90
2347 2370 5.103940 AGGTATTCCTGCCAAGACATAATGT 60.104 40.000 0.00 0.00 43.33 2.71
2383 2406 2.661594 GTTTCTTGAACCGATGCAACC 58.338 47.619 0.00 0.00 31.85 3.77
2386 2409 2.513753 TCTTGAACCGATGCAACCAAT 58.486 42.857 0.00 0.00 0.00 3.16
2388 2411 4.075682 TCTTGAACCGATGCAACCAATAA 58.924 39.130 0.00 0.00 0.00 1.40
2390 2413 2.163412 TGAACCGATGCAACCAATAAGC 59.837 45.455 0.00 0.00 0.00 3.09
2427 2451 2.072298 GTGAACTGTGACATGAGGAGC 58.928 52.381 0.00 0.00 0.00 4.70
2441 2465 2.159043 TGAGGAGCTTGATCGACATTCC 60.159 50.000 0.00 0.00 0.00 3.01
2453 2477 4.066646 TCGACATTCCTGAACACTTTGA 57.933 40.909 0.00 0.00 0.00 2.69
2471 2495 2.348605 GACACTTTGCGCTGCCCAAA 62.349 55.000 9.73 11.53 0.00 3.28
2480 2505 1.002033 GCGCTGCCCAAATCTTCATAG 60.002 52.381 0.00 0.00 0.00 2.23
2490 2515 6.351286 GCCCAAATCTTCATAGGACATTTTGT 60.351 38.462 0.00 0.00 0.00 2.83
2545 2572 5.291614 TGAAGTTTCTTGTTTGCATTTGAGC 59.708 36.000 0.00 0.00 0.00 4.26
2549 2576 3.968649 TCTTGTTTGCATTTGAGCACTC 58.031 40.909 0.00 0.00 45.61 3.51
2567 2594 4.688021 CACTCTCAGGTTACTAATCTGCC 58.312 47.826 4.37 0.00 0.00 4.85
2570 2597 5.138758 TCTCAGGTTACTAATCTGCCCTA 57.861 43.478 4.37 0.00 0.00 3.53
2571 2598 5.525484 TCTCAGGTTACTAATCTGCCCTAA 58.475 41.667 4.37 0.00 0.00 2.69
2572 2599 5.363005 TCTCAGGTTACTAATCTGCCCTAAC 59.637 44.000 4.37 0.00 0.00 2.34
2573 2600 5.027460 TCAGGTTACTAATCTGCCCTAACA 58.973 41.667 4.37 0.00 0.00 2.41
2574 2601 5.128827 TCAGGTTACTAATCTGCCCTAACAG 59.871 44.000 4.37 0.00 39.12 3.16
2593 2620 1.974236 AGTACAAAGCAGCCTCTGACT 59.026 47.619 0.00 0.00 32.44 3.41
2610 2638 6.813152 CCTCTGACTTGATGTTTTTGTTTGTT 59.187 34.615 0.00 0.00 0.00 2.83
2611 2639 7.201461 CCTCTGACTTGATGTTTTTGTTTGTTG 60.201 37.037 0.00 0.00 0.00 3.33
2622 2650 5.776519 TTTTGTTTGTTGTGATGTTCAGC 57.223 34.783 0.00 0.00 0.00 4.26
2632 2660 1.079503 GATGTTCAGCGGTCCAGTTC 58.920 55.000 0.00 0.00 0.00 3.01
2633 2661 0.396435 ATGTTCAGCGGTCCAGTTCA 59.604 50.000 0.00 0.00 0.00 3.18
2636 2664 0.396435 TTCAGCGGTCCAGTTCATGT 59.604 50.000 0.00 0.00 0.00 3.21
2674 2702 1.368345 CGATGCCATTTCACGCTGGA 61.368 55.000 0.00 0.00 34.24 3.86
2678 2706 1.098050 GCCATTTCACGCTGGAGAAT 58.902 50.000 0.00 0.00 34.24 2.40
2743 2771 4.844655 ACCCTGACAGGTTAAGAACTACAT 59.155 41.667 20.24 0.00 36.44 2.29
2869 2898 3.826157 CTGCACCTTTTCATTACCCAAGA 59.174 43.478 0.00 0.00 0.00 3.02
2870 2899 4.219115 TGCACCTTTTCATTACCCAAGAA 58.781 39.130 0.00 0.00 0.00 2.52
2872 2901 5.047377 TGCACCTTTTCATTACCCAAGAATC 60.047 40.000 0.00 0.00 0.00 2.52
2873 2902 5.185828 GCACCTTTTCATTACCCAAGAATCT 59.814 40.000 0.00 0.00 0.00 2.40
2874 2903 6.624423 CACCTTTTCATTACCCAAGAATCTG 58.376 40.000 0.00 0.00 0.00 2.90
2886 2915 4.262549 CCCAAGAATCTGCCAATGTTCAAA 60.263 41.667 0.00 0.00 0.00 2.69
2934 2963 1.718757 GCCACGGCTTAGAGCAATGG 61.719 60.000 14.12 14.12 44.75 3.16
2936 2965 0.392998 CACGGCTTAGAGCAATGGGT 60.393 55.000 2.04 0.00 44.75 4.51
2985 3033 9.241919 TGGCTAGAATTTGACAGATTTTGAATA 57.758 29.630 0.00 0.00 0.00 1.75
3029 3077 3.900601 ACTTGGCACATGGGTAATTGAAA 59.099 39.130 0.00 0.00 39.30 2.69
3037 3085 6.449698 CACATGGGTAATTGAAATAGCATCC 58.550 40.000 0.00 0.00 0.00 3.51
3038 3086 6.040729 CACATGGGTAATTGAAATAGCATCCA 59.959 38.462 0.00 0.00 0.00 3.41
3039 3087 6.266103 ACATGGGTAATTGAAATAGCATCCAG 59.734 38.462 0.00 0.00 0.00 3.86
3054 3102 3.375299 GCATCCAGAATACAGTTCACACC 59.625 47.826 0.00 0.00 0.00 4.16
3063 3111 5.880054 ATACAGTTCACACCATAGCAAAC 57.120 39.130 0.00 0.00 0.00 2.93
3067 3115 3.315191 AGTTCACACCATAGCAAACACAC 59.685 43.478 0.00 0.00 0.00 3.82
3069 3117 2.616376 TCACACCATAGCAAACACACAC 59.384 45.455 0.00 0.00 0.00 3.82
3077 3125 0.814457 GCAAACACACACCAGGTTCA 59.186 50.000 0.00 0.00 0.00 3.18
3125 3173 6.882610 AATGCAGTTCAGTTCAAATAGACA 57.117 33.333 0.00 0.00 0.00 3.41
3148 3196 1.269998 ACCTAATAGAGATCGCGTGGC 59.730 52.381 5.77 0.00 0.00 5.01
3195 3243 0.895530 TAGTTCCCGAACAGAGCCTG 59.104 55.000 10.07 1.16 43.47 4.85
3196 3244 0.832135 AGTTCCCGAACAGAGCCTGA 60.832 55.000 10.07 0.00 43.47 3.86
3198 3246 0.984230 TTCCCGAACAGAGCCTGATT 59.016 50.000 8.91 0.96 35.18 2.57
3234 3282 4.449743 GCATATTGCCATTATTGTGCAAGG 59.550 41.667 14.46 9.96 46.90 3.61
3239 3287 2.754552 GCCATTATTGTGCAAGGAGACA 59.245 45.455 0.00 0.00 0.00 3.41
3247 3295 1.949525 GTGCAAGGAGACAAGCAGAAA 59.050 47.619 0.00 0.00 41.92 2.52
3252 3300 4.457257 GCAAGGAGACAAGCAGAAATAGTT 59.543 41.667 0.00 0.00 33.25 2.24
3259 3307 7.379797 GGAGACAAGCAGAAATAGTTCAAAAAC 59.620 37.037 5.62 0.00 36.09 2.43
3260 3308 7.771183 AGACAAGCAGAAATAGTTCAAAAACA 58.229 30.769 5.62 0.00 37.88 2.83
3388 3441 5.528043 ACTATCTGTGATCCATGTCTCAC 57.472 43.478 14.75 14.75 41.69 3.51
3390 3443 3.599730 TCTGTGATCCATGTCTCACAC 57.400 47.619 18.54 9.85 45.01 3.82
3391 3444 3.168292 TCTGTGATCCATGTCTCACACT 58.832 45.455 18.54 0.00 45.01 3.55
3416 3472 9.606631 CTATAATGAGCTTGAACCTAACTCTTT 57.393 33.333 0.00 0.00 0.00 2.52
3448 3504 7.119605 GCTTTTGCAATTCATGTTATTCACA 57.880 32.000 0.00 0.00 46.58 3.58
3454 3510 5.865552 GCAATTCATGTTATTCACAAGCACT 59.134 36.000 0.00 0.00 39.50 4.40
3455 3511 6.366877 GCAATTCATGTTATTCACAAGCACTT 59.633 34.615 0.00 0.00 39.50 3.16
3485 3542 5.882000 TCATTACAGCATTAGAGCAATGTGT 59.118 36.000 0.00 5.19 45.05 3.72
3529 3586 2.816087 GTGTGCATGGTTCAGATTCACT 59.184 45.455 0.00 0.00 0.00 3.41
3554 3611 0.107993 CTGCGGCCAGAGAGATTTCA 60.108 55.000 2.24 0.00 41.77 2.69
3582 3639 6.090483 TCTTCGGAGATGATAAATCTGGTC 57.910 41.667 0.00 0.00 35.73 4.02
3583 3640 5.598417 TCTTCGGAGATGATAAATCTGGTCA 59.402 40.000 0.00 0.00 35.73 4.02
3585 3642 4.895889 TCGGAGATGATAAATCTGGTCAGT 59.104 41.667 0.00 0.00 0.00 3.41
3605 3662 6.698766 GTCAGTGTCTTTGCTTTCATTTGATT 59.301 34.615 0.00 0.00 0.00 2.57
3609 3666 9.066892 AGTGTCTTTGCTTTCATTTGATTAGTA 57.933 29.630 0.00 0.00 0.00 1.82
3644 3702 7.307131 ACCTTGAATTTTCTGACCATGATTT 57.693 32.000 0.00 0.00 0.00 2.17
3650 3708 9.513906 TGAATTTTCTGACCATGATTTACTACA 57.486 29.630 0.00 0.00 0.00 2.74
3662 3720 6.194796 TGATTTACTACAAATGCAGAAGCC 57.805 37.500 0.00 0.00 41.13 4.35
3674 3732 1.684248 GCAGAAGCCCTGGAACATGAT 60.684 52.381 0.00 0.00 43.13 2.45
3696 3754 1.747355 AGCTGTAGACAATTGGCATGC 59.253 47.619 15.18 9.90 0.00 4.06
3703 3761 0.742505 ACAATTGGCATGCATCCTCG 59.257 50.000 21.36 5.37 0.00 4.63
3718 3776 4.083590 GCATCCTCGAAAGGCAGATAATTC 60.084 45.833 0.00 0.00 43.02 2.17
3758 3819 7.415653 CCCTTCCAGCTATTAGTTGATGAAAAC 60.416 40.741 8.92 0.00 0.00 2.43
3759 3820 7.337942 CCTTCCAGCTATTAGTTGATGAAAACT 59.662 37.037 8.92 0.00 42.89 2.66
3761 3822 9.733556 TTCCAGCTATTAGTTGATGAAAACTTA 57.266 29.630 8.92 0.00 40.77 2.24
3790 3851 9.783081 TGCATTACATGATACTGATCTAACATT 57.217 29.630 0.00 0.00 32.79 2.71
3802 3863 6.591834 ACTGATCTAACATTACACTTCTGCAC 59.408 38.462 0.00 0.00 0.00 4.57
3823 3884 3.117738 ACTTGATAGCTTCATCCCTTGGG 60.118 47.826 0.00 0.00 33.34 4.12
3880 3941 4.961438 AATTTTGTCAAGCACTCCCATT 57.039 36.364 0.00 0.00 0.00 3.16
3891 3952 3.445096 AGCACTCCCATTTAACTGATTGC 59.555 43.478 0.00 0.00 34.68 3.56
3892 3953 3.429410 GCACTCCCATTTAACTGATTGCC 60.429 47.826 0.00 0.00 30.01 4.52
3904 3996 0.605319 TGATTGCCGTGTCCCAGTTC 60.605 55.000 0.00 0.00 0.00 3.01
3907 3999 0.394488 TTGCCGTGTCCCAGTTCAAA 60.394 50.000 0.00 0.00 0.00 2.69
3909 4001 0.958822 GCCGTGTCCCAGTTCAAAAT 59.041 50.000 0.00 0.00 0.00 1.82
3911 4003 2.752903 GCCGTGTCCCAGTTCAAAATAT 59.247 45.455 0.00 0.00 0.00 1.28
3912 4004 3.942748 GCCGTGTCCCAGTTCAAAATATA 59.057 43.478 0.00 0.00 0.00 0.86
3913 4005 4.396790 GCCGTGTCCCAGTTCAAAATATAA 59.603 41.667 0.00 0.00 0.00 0.98
3916 4008 6.418956 CGTGTCCCAGTTCAAAATATAATCG 58.581 40.000 0.00 0.00 0.00 3.34
3917 4009 6.036735 CGTGTCCCAGTTCAAAATATAATCGT 59.963 38.462 0.00 0.00 0.00 3.73
3918 4010 7.407337 GTGTCCCAGTTCAAAATATAATCGTC 58.593 38.462 0.00 0.00 0.00 4.20
3919 4011 7.280205 GTGTCCCAGTTCAAAATATAATCGTCT 59.720 37.037 0.00 0.00 0.00 4.18
3920 4012 7.279981 TGTCCCAGTTCAAAATATAATCGTCTG 59.720 37.037 0.00 0.00 0.00 3.51
3921 4013 7.280205 GTCCCAGTTCAAAATATAATCGTCTGT 59.720 37.037 0.00 0.00 0.00 3.41
3922 4014 7.827236 TCCCAGTTCAAAATATAATCGTCTGTT 59.173 33.333 0.00 0.00 0.00 3.16
3956 4168 5.418840 CCTATGGGTTTTAGATTTGCACTGT 59.581 40.000 0.00 0.00 0.00 3.55
3966 4178 1.985473 TTTGCACTGTCTGGCTTGAT 58.015 45.000 0.00 0.00 0.00 2.57
3994 4206 8.477984 TGCCAATCTTATTTATCAAAAACTGC 57.522 30.769 0.00 0.00 0.00 4.40
4007 4219 5.646606 TCAAAAACTGCCACTTGTTAGTTC 58.353 37.500 0.00 0.00 32.61 3.01
4021 4481 4.406456 TGTTAGTTCATGGAATGCAGGTT 58.594 39.130 0.00 0.00 46.21 3.50
4068 4528 1.005867 ACCAAAGCTGCCATTTGCG 60.006 52.632 8.40 5.51 45.60 4.85
4162 6995 5.072600 TCAGTAATCTGGTTACAAAGGGTGT 59.927 40.000 12.95 0.00 44.18 4.16
4169 7002 0.183014 TTACAAAGGGTGTGGCCGAA 59.817 50.000 0.00 0.00 41.89 4.30
4207 7040 0.809385 CAGGTGCAGGCTTGATCTTG 59.191 55.000 0.00 0.00 0.00 3.02
4242 7075 8.485578 TTTGTAAGGAAACATGTAGGGAAAAT 57.514 30.769 0.00 0.00 0.00 1.82
4273 7106 7.375053 TGCAAAAGATGTGTAGGGAAAATTAC 58.625 34.615 0.00 0.00 0.00 1.89
4277 7110 6.388619 AGATGTGTAGGGAAAATTACCAGT 57.611 37.500 0.00 0.00 31.71 4.00
4289 7175 7.610305 GGGAAAATTACCAGTGATGAGTTAGAA 59.390 37.037 0.00 0.00 0.00 2.10
4290 7176 8.669243 GGAAAATTACCAGTGATGAGTTAGAAG 58.331 37.037 0.00 0.00 0.00 2.85
4291 7177 9.220767 GAAAATTACCAGTGATGAGTTAGAAGT 57.779 33.333 0.00 0.00 0.00 3.01
4361 7247 4.033932 GTGTTTGCTTCAAATTCCCACAAC 59.966 41.667 0.00 0.00 35.74 3.32
4378 7264 4.037923 CCACAACCAATGCTTACTTGAAGT 59.962 41.667 2.37 2.37 37.49 3.01
4600 7488 7.446931 TGAAGTAACTTTTTATCATGCCTGTCA 59.553 33.333 0.00 0.00 0.00 3.58
4617 7505 5.268544 CCTGTCATACTGAATCAAAATGCG 58.731 41.667 0.96 0.00 0.00 4.73
4618 7506 5.163723 CCTGTCATACTGAATCAAAATGCGT 60.164 40.000 0.96 0.00 0.00 5.24
4619 7507 6.037062 CCTGTCATACTGAATCAAAATGCGTA 59.963 38.462 0.96 0.00 0.00 4.42
4620 7508 6.771076 TGTCATACTGAATCAAAATGCGTAC 58.229 36.000 0.96 0.00 0.00 3.67
4621 7509 6.183360 TGTCATACTGAATCAAAATGCGTACC 60.183 38.462 0.96 0.00 0.00 3.34
4622 7510 3.740044 ACTGAATCAAAATGCGTACCG 57.260 42.857 0.00 0.00 0.00 4.02
4623 7511 3.331150 ACTGAATCAAAATGCGTACCGA 58.669 40.909 0.00 0.00 0.00 4.69
4624 7512 3.749088 ACTGAATCAAAATGCGTACCGAA 59.251 39.130 0.00 0.00 0.00 4.30
4625 7513 4.394920 ACTGAATCAAAATGCGTACCGAAT 59.605 37.500 0.00 0.00 0.00 3.34
4626 7514 4.904116 TGAATCAAAATGCGTACCGAATC 58.096 39.130 0.00 0.00 0.00 2.52
4627 7515 4.393371 TGAATCAAAATGCGTACCGAATCA 59.607 37.500 0.00 0.00 0.00 2.57
4628 7516 4.955925 ATCAAAATGCGTACCGAATCAA 57.044 36.364 0.00 0.00 0.00 2.57
4629 7517 4.750952 TCAAAATGCGTACCGAATCAAA 57.249 36.364 0.00 0.00 0.00 2.69
4630 7518 5.109662 TCAAAATGCGTACCGAATCAAAA 57.890 34.783 0.00 0.00 0.00 2.44
4631 7519 5.704888 TCAAAATGCGTACCGAATCAAAAT 58.295 33.333 0.00 0.00 0.00 1.82
4658 7546 5.710567 ACCTTACATTTAAACCTGAAGCCTC 59.289 40.000 0.00 0.00 0.00 4.70
4672 7560 1.148048 GCCTCCTTCCTCCTGCATC 59.852 63.158 0.00 0.00 0.00 3.91
4675 7563 0.179936 CTCCTTCCTCCTGCATCCAC 59.820 60.000 0.00 0.00 0.00 4.02
4680 7568 1.153489 CCTCCTGCATCCACTCACG 60.153 63.158 0.00 0.00 0.00 4.35
4681 7569 1.153489 CTCCTGCATCCACTCACGG 60.153 63.158 0.00 0.00 0.00 4.94
4682 7570 1.892819 CTCCTGCATCCACTCACGGT 61.893 60.000 0.00 0.00 0.00 4.83
4683 7571 1.742880 CCTGCATCCACTCACGGTG 60.743 63.158 0.56 0.56 44.96 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.225682 TCCATATTTCTAATTTCTAGACCACCT 57.774 33.333 0.00 0.00 0.00 4.00
103 104 7.388437 TGGTGTCCAATATACGAGTACTTTTT 58.612 34.615 0.00 0.00 0.00 1.94
104 105 6.938507 TGGTGTCCAATATACGAGTACTTTT 58.061 36.000 0.00 0.00 0.00 2.27
105 106 6.534475 TGGTGTCCAATATACGAGTACTTT 57.466 37.500 0.00 0.00 0.00 2.66
106 107 5.451520 GCTGGTGTCCAATATACGAGTACTT 60.452 44.000 0.00 0.00 30.80 2.24
107 108 4.037684 GCTGGTGTCCAATATACGAGTACT 59.962 45.833 0.00 0.00 30.80 2.73
108 109 4.202080 TGCTGGTGTCCAATATACGAGTAC 60.202 45.833 0.00 0.00 30.80 2.73
109 110 3.955551 TGCTGGTGTCCAATATACGAGTA 59.044 43.478 0.00 0.00 30.80 2.59
110 111 2.764010 TGCTGGTGTCCAATATACGAGT 59.236 45.455 0.00 0.00 30.80 4.18
111 112 3.452755 TGCTGGTGTCCAATATACGAG 57.547 47.619 0.00 0.00 30.80 4.18
112 113 4.415881 AATGCTGGTGTCCAATATACGA 57.584 40.909 0.00 0.00 30.80 3.43
113 114 5.065859 TCAAAATGCTGGTGTCCAATATACG 59.934 40.000 0.00 0.00 30.80 3.06
114 115 6.318648 TCTCAAAATGCTGGTGTCCAATATAC 59.681 38.462 0.00 0.00 30.80 1.47
115 116 6.422333 TCTCAAAATGCTGGTGTCCAATATA 58.578 36.000 0.00 0.00 30.80 0.86
116 117 5.263599 TCTCAAAATGCTGGTGTCCAATAT 58.736 37.500 0.00 0.00 30.80 1.28
117 118 4.661222 TCTCAAAATGCTGGTGTCCAATA 58.339 39.130 0.00 0.00 30.80 1.90
118 119 3.499338 TCTCAAAATGCTGGTGTCCAAT 58.501 40.909 0.00 0.00 30.80 3.16
119 120 2.942804 TCTCAAAATGCTGGTGTCCAA 58.057 42.857 0.00 0.00 30.80 3.53
120 121 2.655090 TCTCAAAATGCTGGTGTCCA 57.345 45.000 0.00 0.00 0.00 4.02
121 122 4.320608 TTTTCTCAAAATGCTGGTGTCC 57.679 40.909 0.00 0.00 0.00 4.02
582 583 2.409975 TGTAGAACAAGTGCGGCTAAC 58.590 47.619 0.00 0.00 0.00 2.34
583 584 2.823924 TGTAGAACAAGTGCGGCTAA 57.176 45.000 0.00 0.00 0.00 3.09
584 585 2.028476 ACATGTAGAACAAGTGCGGCTA 60.028 45.455 0.00 0.00 27.90 3.93
585 586 1.270839 ACATGTAGAACAAGTGCGGCT 60.271 47.619 0.00 0.00 27.90 5.52
616 617 1.227380 CGAGATCCCCAAAGGCTCG 60.227 63.158 0.00 0.00 40.42 5.03
619 620 1.026718 CACACGAGATCCCCAAAGGC 61.027 60.000 0.00 0.00 34.51 4.35
665 666 6.299141 TCATGACAAAGAAAGGCTAAGAAGT 58.701 36.000 0.00 0.00 0.00 3.01
726 727 5.187381 TGAGAGAAATCTTGCTCAGATCTGT 59.813 40.000 21.92 0.00 41.93 3.41
746 747 0.108585 GCCGGGGCTGATTTATGAGA 59.891 55.000 2.18 0.00 38.26 3.27
799 800 2.051334 TGCCCACCCAAATTATCTCG 57.949 50.000 0.00 0.00 0.00 4.04
871 872 1.266989 CTTGAACAGAAACCGGCTTCC 59.733 52.381 13.95 0.00 0.00 3.46
890 891 1.765314 ACCTCTATCGCAAAGCATCCT 59.235 47.619 0.00 0.00 0.00 3.24
904 905 3.839323 TCCTCCCTACAACAACCTCTA 57.161 47.619 0.00 0.00 0.00 2.43
905 906 2.715763 TCCTCCCTACAACAACCTCT 57.284 50.000 0.00 0.00 0.00 3.69
911 912 1.992557 AGGCATTTCCTCCCTACAACA 59.007 47.619 0.00 0.00 43.20 3.33
982 983 4.202010 GCGGCACCTGAATTAATTACACAT 60.202 41.667 0.00 0.00 0.00 3.21
1183 1184 4.094590 CAGGCTGTTGAAGAAGCTTCTATG 59.905 45.833 28.67 15.26 39.46 2.23
1206 1207 8.053026 ACATATACCTCGTCATATACTTCACC 57.947 38.462 0.00 0.00 0.00 4.02
1215 1216 9.093970 CTTCAAAACAACATATACCTCGTCATA 57.906 33.333 0.00 0.00 0.00 2.15
1228 1229 4.686191 TTCCATGCCTTCAAAACAACAT 57.314 36.364 0.00 0.00 0.00 2.71
1230 1239 6.375945 AAATTTCCATGCCTTCAAAACAAC 57.624 33.333 0.00 0.00 0.00 3.32
1236 1245 8.948145 CATAAATCAAAATTTCCATGCCTTCAA 58.052 29.630 0.00 0.00 36.49 2.69
1238 1247 7.281549 AGCATAAATCAAAATTTCCATGCCTTC 59.718 33.333 11.94 0.00 42.56 3.46
1242 1251 7.712205 AGGTAGCATAAATCAAAATTTCCATGC 59.288 33.333 9.19 9.19 42.23 4.06
1249 1258 9.995003 TGTTTTGAGGTAGCATAAATCAAAATT 57.005 25.926 16.92 0.00 43.26 1.82
1250 1259 9.995003 TTGTTTTGAGGTAGCATAAATCAAAAT 57.005 25.926 16.92 0.00 43.26 1.82
1256 1265 6.070881 TGGCATTGTTTTGAGGTAGCATAAAT 60.071 34.615 0.00 0.00 0.00 1.40
1258 1267 4.769488 TGGCATTGTTTTGAGGTAGCATAA 59.231 37.500 0.00 0.00 0.00 1.90
1261 1270 2.295909 GTGGCATTGTTTTGAGGTAGCA 59.704 45.455 0.00 0.00 0.00 3.49
1262 1271 2.558359 AGTGGCATTGTTTTGAGGTAGC 59.442 45.455 0.00 0.00 0.00 3.58
1263 1272 3.820467 TCAGTGGCATTGTTTTGAGGTAG 59.180 43.478 9.95 0.00 0.00 3.18
1264 1273 3.568007 GTCAGTGGCATTGTTTTGAGGTA 59.432 43.478 9.95 0.00 0.00 3.08
1265 1274 2.362077 GTCAGTGGCATTGTTTTGAGGT 59.638 45.455 9.95 0.00 0.00 3.85
1266 1275 2.361757 TGTCAGTGGCATTGTTTTGAGG 59.638 45.455 9.95 0.00 0.00 3.86
1267 1276 3.713858 TGTCAGTGGCATTGTTTTGAG 57.286 42.857 9.95 0.00 0.00 3.02
1268 1277 4.669206 ATTGTCAGTGGCATTGTTTTGA 57.331 36.364 9.95 0.00 0.00 2.69
1269 1278 6.128499 CCAATATTGTCAGTGGCATTGTTTTG 60.128 38.462 14.25 2.20 0.00 2.44
1270 1279 5.933463 CCAATATTGTCAGTGGCATTGTTTT 59.067 36.000 14.25 0.00 0.00 2.43
1271 1280 5.481105 CCAATATTGTCAGTGGCATTGTTT 58.519 37.500 14.25 0.00 0.00 2.83
1272 1281 4.081531 CCCAATATTGTCAGTGGCATTGTT 60.082 41.667 14.25 0.00 32.24 2.83
1273 1282 3.448301 CCCAATATTGTCAGTGGCATTGT 59.552 43.478 14.25 0.00 32.24 2.71
1274 1283 3.700539 TCCCAATATTGTCAGTGGCATTG 59.299 43.478 14.25 3.22 32.24 2.82
1275 1284 3.979911 TCCCAATATTGTCAGTGGCATT 58.020 40.909 14.25 0.00 32.24 3.56
1276 1285 3.668141 TCCCAATATTGTCAGTGGCAT 57.332 42.857 14.25 0.00 32.24 4.40
1277 1286 3.448093 TTCCCAATATTGTCAGTGGCA 57.552 42.857 14.25 0.00 32.24 4.92
1278 1287 4.799564 TTTTCCCAATATTGTCAGTGGC 57.200 40.909 14.25 0.00 32.24 5.01
1279 1288 9.889128 ATAAAATTTTCCCAATATTGTCAGTGG 57.111 29.630 14.25 7.86 33.40 4.00
1289 1298 9.620259 GGTGGCATTAATAAAATTTTCCCAATA 57.380 29.630 6.72 0.00 0.00 1.90
1290 1299 8.335484 AGGTGGCATTAATAAAATTTTCCCAAT 58.665 29.630 6.72 2.77 0.00 3.16
1291 1300 7.694093 AGGTGGCATTAATAAAATTTTCCCAA 58.306 30.769 6.72 0.42 0.00 4.12
1296 1306 9.435688 GAACTGAGGTGGCATTAATAAAATTTT 57.564 29.630 8.75 8.75 0.00 1.82
1303 1313 4.853468 TGGAACTGAGGTGGCATTAATA 57.147 40.909 0.00 0.00 0.00 0.98
1318 1328 5.564550 AGCTCAAGATTATGTGTTGGAACT 58.435 37.500 0.00 0.00 32.25 3.01
1334 1344 7.992180 ACTGAACAAACAAATTTAGCTCAAG 57.008 32.000 0.00 0.00 0.00 3.02
1335 1345 7.201513 GCAACTGAACAAACAAATTTAGCTCAA 60.202 33.333 0.00 0.00 0.00 3.02
1352 1363 5.689383 TTTCTCATACCAAGCAACTGAAC 57.311 39.130 0.00 0.00 0.00 3.18
1360 1371 9.822185 AAATTAATTGGATTTCTCATACCAAGC 57.178 29.630 0.39 0.00 43.93 4.01
1376 1388 7.439056 AGTGTGCAGTTTTCAGAAATTAATTGG 59.561 33.333 0.39 0.00 0.00 3.16
1407 1420 6.215515 AGGGAGTATATACAACTCTGCCTA 57.784 41.667 15.18 0.00 42.48 3.93
1408 1421 5.081032 GAGGGAGTATATACAACTCTGCCT 58.919 45.833 15.18 12.69 42.48 4.75
1409 1422 4.221041 GGAGGGAGTATATACAACTCTGCC 59.779 50.000 20.90 13.25 42.48 4.85
1411 1424 5.071370 ACGGAGGGAGTATATACAACTCTG 58.929 45.833 24.13 24.13 42.48 3.35
1425 1438 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1426 1439 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1428 1441 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1429 1442 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1444 1457 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
1445 1458 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
1446 1459 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
1447 1460 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
1448 1461 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
1449 1462 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
1450 1463 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
1451 1464 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
1452 1465 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
1453 1466 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
1454 1467 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
1455 1468 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
1456 1469 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
1457 1470 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
1458 1471 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
1459 1472 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
1460 1473 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
1461 1474 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
1462 1475 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
1463 1476 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
1464 1477 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
1465 1478 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
1466 1479 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
1467 1480 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
1468 1481 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
1469 1482 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
1470 1483 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
1471 1484 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
1472 1485 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
1473 1486 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
1478 1491 9.944376 ACTTAAAATGCATCTATATACATCCGT 57.056 29.630 0.00 0.00 0.00 4.69
1500 1513 9.638239 GGAGCAAAATGAATGAATTTACACTTA 57.362 29.630 0.00 0.00 0.00 2.24
1501 1514 7.329226 CGGAGCAAAATGAATGAATTTACACTT 59.671 33.333 0.00 0.00 0.00 3.16
1502 1515 6.808212 CGGAGCAAAATGAATGAATTTACACT 59.192 34.615 0.00 0.00 0.00 3.55
1503 1516 6.586082 ACGGAGCAAAATGAATGAATTTACAC 59.414 34.615 0.00 0.00 0.00 2.90
1504 1517 6.686630 ACGGAGCAAAATGAATGAATTTACA 58.313 32.000 0.00 0.00 0.00 2.41
1505 1518 8.745837 CATACGGAGCAAAATGAATGAATTTAC 58.254 33.333 0.00 0.00 0.00 2.01
1506 1519 8.465999 ACATACGGAGCAAAATGAATGAATTTA 58.534 29.630 0.00 0.00 0.00 1.40
1507 1520 7.322664 ACATACGGAGCAAAATGAATGAATTT 58.677 30.769 0.00 0.00 0.00 1.82
1508 1521 6.866480 ACATACGGAGCAAAATGAATGAATT 58.134 32.000 0.00 0.00 0.00 2.17
1509 1522 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
1510 1523 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
1511 1524 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
1512 1525 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
1513 1526 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
1514 1527 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
1515 1528 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
1516 1529 4.034048 GTGGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
1517 1530 4.189231 GTGGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
1518 1531 3.592059 GTGGACTACATACGGAGCAAAA 58.408 45.455 0.00 0.00 0.00 2.44
1519 1532 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
1520 1533 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
1521 1534 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
1522 1535 1.400737 AGGTGGACTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
1523 1536 3.564644 CACTAGGTGGACTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
1524 1537 3.548770 CACTAGGTGGACTACATACGGA 58.451 50.000 0.00 0.00 0.00 4.69
1525 1538 3.984508 CACTAGGTGGACTACATACGG 57.015 52.381 0.00 0.00 0.00 4.02
1537 1550 4.469945 TCTTTGTAGGGATTCCACTAGGTG 59.530 45.833 4.80 0.00 35.89 4.00
1538 1551 4.470304 GTCTTTGTAGGGATTCCACTAGGT 59.530 45.833 4.80 0.00 35.89 3.08
1539 1552 4.717280 AGTCTTTGTAGGGATTCCACTAGG 59.283 45.833 4.80 0.00 34.83 3.02
1540 1553 5.941555 AGTCTTTGTAGGGATTCCACTAG 57.058 43.478 4.80 0.00 34.83 2.57
1541 1554 7.989947 ATAAGTCTTTGTAGGGATTCCACTA 57.010 36.000 4.80 1.21 34.83 2.74
1542 1555 6.893020 ATAAGTCTTTGTAGGGATTCCACT 57.107 37.500 4.80 2.18 34.83 4.00
1543 1556 9.628500 AAATATAAGTCTTTGTAGGGATTCCAC 57.372 33.333 4.80 0.00 34.83 4.02
1550 1563 9.257651 CGTTCCTAAATATAAGTCTTTGTAGGG 57.742 37.037 0.00 0.00 0.00 3.53
1551 1564 9.257651 CCGTTCCTAAATATAAGTCTTTGTAGG 57.742 37.037 0.00 0.00 0.00 3.18
1554 1567 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1555 1568 8.202137 TCCTCCGTTCCTAAATATAAGTCTTTG 58.798 37.037 0.00 0.00 0.00 2.77
1556 1569 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
1557 1570 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
1558 1571 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
1559 1572 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
1560 1573 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
1564 1577 9.543231 TCATATACTTCCTCCGTTCCTAAATAT 57.457 33.333 0.00 0.00 0.00 1.28
1565 1578 8.945195 TCATATACTTCCTCCGTTCCTAAATA 57.055 34.615 0.00 0.00 0.00 1.40
1566 1579 7.850935 TCATATACTTCCTCCGTTCCTAAAT 57.149 36.000 0.00 0.00 0.00 1.40
1567 1580 7.256190 CCATCATATACTTCCTCCGTTCCTAAA 60.256 40.741 0.00 0.00 0.00 1.85
1568 1581 6.210784 CCATCATATACTTCCTCCGTTCCTAA 59.789 42.308 0.00 0.00 0.00 2.69
1569 1582 5.715279 CCATCATATACTTCCTCCGTTCCTA 59.285 44.000 0.00 0.00 0.00 2.94
1570 1583 4.528596 CCATCATATACTTCCTCCGTTCCT 59.471 45.833 0.00 0.00 0.00 3.36
1571 1584 4.527038 TCCATCATATACTTCCTCCGTTCC 59.473 45.833 0.00 0.00 0.00 3.62
1572 1585 5.477291 TCTCCATCATATACTTCCTCCGTTC 59.523 44.000 0.00 0.00 0.00 3.95
1573 1586 5.394738 TCTCCATCATATACTTCCTCCGTT 58.605 41.667 0.00 0.00 0.00 4.44
1574 1587 4.999310 TCTCCATCATATACTTCCTCCGT 58.001 43.478 0.00 0.00 0.00 4.69
1575 1588 5.654209 TGATCTCCATCATATACTTCCTCCG 59.346 44.000 0.00 0.00 33.80 4.63
1576 1589 6.894654 TCTGATCTCCATCATATACTTCCTCC 59.105 42.308 0.00 0.00 38.42 4.30
1577 1590 7.953005 TCTGATCTCCATCATATACTTCCTC 57.047 40.000 0.00 0.00 38.42 3.71
1578 1591 8.121185 TCATCTGATCTCCATCATATACTTCCT 58.879 37.037 0.00 0.00 38.42 3.36
1579 1592 8.303780 TCATCTGATCTCCATCATATACTTCC 57.696 38.462 0.00 0.00 38.42 3.46
1582 1595 8.205512 GCAATCATCTGATCTCCATCATATACT 58.794 37.037 0.00 0.00 38.42 2.12
1583 1596 8.205512 AGCAATCATCTGATCTCCATCATATAC 58.794 37.037 0.00 0.00 38.42 1.47
1584 1597 8.320338 AGCAATCATCTGATCTCCATCATATA 57.680 34.615 0.00 0.00 38.42 0.86
1585 1598 7.201702 AGCAATCATCTGATCTCCATCATAT 57.798 36.000 0.00 0.00 38.42 1.78
1586 1599 6.622427 AGCAATCATCTGATCTCCATCATA 57.378 37.500 0.00 0.00 38.42 2.15
1587 1600 5.506730 AGCAATCATCTGATCTCCATCAT 57.493 39.130 0.00 0.00 38.42 2.45
1588 1601 4.976540 AGCAATCATCTGATCTCCATCA 57.023 40.909 0.00 0.00 36.62 3.07
1589 1602 8.205512 ACATATAGCAATCATCTGATCTCCATC 58.794 37.037 0.00 0.00 32.75 3.51
1590 1603 7.988028 CACATATAGCAATCATCTGATCTCCAT 59.012 37.037 0.00 0.00 32.75 3.41
1591 1604 7.328737 CACATATAGCAATCATCTGATCTCCA 58.671 38.462 0.00 0.00 32.75 3.86
1608 1621 5.614308 TCTCTGAACCATTGCCACATATAG 58.386 41.667 0.00 0.00 0.00 1.31
1648 1662 8.827677 GCTCGTTATAACCAAGAGATTTGTAAT 58.172 33.333 17.95 0.00 0.00 1.89
1662 1676 7.272731 GTCTTTTCCAAATTGCTCGTTATAACC 59.727 37.037 10.01 0.00 0.00 2.85
1663 1677 7.806014 TGTCTTTTCCAAATTGCTCGTTATAAC 59.194 33.333 5.47 5.47 0.00 1.89
1669 1683 3.550842 GCTGTCTTTTCCAAATTGCTCGT 60.551 43.478 0.00 0.00 0.00 4.18
1675 1689 5.596836 TGAACAGCTGTCTTTTCCAAATT 57.403 34.783 21.95 0.00 30.02 1.82
1680 1694 5.186996 TGAAATGAACAGCTGTCTTTTCC 57.813 39.130 29.15 20.87 30.02 3.13
1699 1713 4.635765 CGCCTAATTTCTCTGAACCATGAA 59.364 41.667 0.00 0.00 0.00 2.57
1734 1748 1.466167 CCGAGTGCAATTCTTCACAGG 59.534 52.381 0.00 4.46 35.76 4.00
1748 1762 2.672961 TGAATCCTAAGCACCGAGTG 57.327 50.000 0.25 0.25 36.51 3.51
1752 1766 3.694072 TGGAAAATGAATCCTAAGCACCG 59.306 43.478 0.00 0.00 37.85 4.94
1910 1928 6.325286 AGAAGACTGAGTTAGAAGTTGGAACT 59.675 38.462 0.00 0.00 42.04 3.01
1911 1929 6.517605 AGAAGACTGAGTTAGAAGTTGGAAC 58.482 40.000 0.00 0.00 0.00 3.62
1912 1930 6.732896 AGAAGACTGAGTTAGAAGTTGGAA 57.267 37.500 0.00 0.00 0.00 3.53
1913 1931 8.307483 CAATAGAAGACTGAGTTAGAAGTTGGA 58.693 37.037 0.00 0.00 0.00 3.53
1914 1932 8.091449 ACAATAGAAGACTGAGTTAGAAGTTGG 58.909 37.037 0.00 0.00 0.00 3.77
1941 1959 9.423061 GCTAATCACCTGTTTTAATGTTGATTT 57.577 29.630 0.00 0.00 0.00 2.17
1944 1962 7.517614 TGCTAATCACCTGTTTTAATGTTGA 57.482 32.000 0.00 0.00 0.00 3.18
1945 1963 9.289303 GTATGCTAATCACCTGTTTTAATGTTG 57.711 33.333 0.00 0.00 0.00 3.33
1946 1964 9.019656 TGTATGCTAATCACCTGTTTTAATGTT 57.980 29.630 0.00 0.00 0.00 2.71
1947 1965 8.574251 TGTATGCTAATCACCTGTTTTAATGT 57.426 30.769 0.00 0.00 0.00 2.71
1950 1968 9.237187 TGATTGTATGCTAATCACCTGTTTTAA 57.763 29.630 0.00 0.00 39.05 1.52
1951 1969 8.800370 TGATTGTATGCTAATCACCTGTTTTA 57.200 30.769 0.00 0.00 39.05 1.52
1952 1970 7.701539 TGATTGTATGCTAATCACCTGTTTT 57.298 32.000 0.00 0.00 39.05 2.43
1953 1971 7.176515 TGTTGATTGTATGCTAATCACCTGTTT 59.823 33.333 0.00 0.00 42.44 2.83
1958 1976 8.931385 AATTTGTTGATTGTATGCTAATCACC 57.069 30.769 0.00 0.00 42.44 4.02
1985 2003 4.861102 GCCCATAGCATGCTAGAATTTT 57.139 40.909 29.78 11.66 42.97 1.82
1998 2016 7.391554 TGAGAATATGTCTTAAATGCCCATAGC 59.608 37.037 0.00 0.00 36.41 2.97
2002 2022 5.532406 GCTGAGAATATGTCTTAAATGCCCA 59.468 40.000 0.00 0.00 36.41 5.36
2018 2038 2.687700 AGCGATTGTGAGCTGAGAAT 57.312 45.000 0.00 0.00 42.82 2.40
2032 2052 1.269621 GGAATACAGCCGTACAGCGAT 60.270 52.381 0.00 0.00 44.77 4.58
2033 2053 0.101759 GGAATACAGCCGTACAGCGA 59.898 55.000 0.00 0.00 44.77 4.93
2038 2058 2.364324 TCATCTGGGAATACAGCCGTAC 59.636 50.000 0.00 0.00 38.36 3.67
2045 2065 3.189606 AGGTTGGTCATCTGGGAATACA 58.810 45.455 0.00 0.00 0.00 2.29
2051 2071 0.324943 ACGAAGGTTGGTCATCTGGG 59.675 55.000 0.00 0.00 0.00 4.45
2055 2075 3.564225 AGTTTTGACGAAGGTTGGTCATC 59.436 43.478 8.19 3.75 43.70 2.92
2082 2102 4.397417 GGTGAGAAAGCTATTGTGCTGATT 59.603 41.667 0.00 0.00 43.24 2.57
2083 2103 3.944015 GGTGAGAAAGCTATTGTGCTGAT 59.056 43.478 0.00 0.00 43.24 2.90
2092 2112 1.630369 TGGCTGTGGTGAGAAAGCTAT 59.370 47.619 0.00 0.00 35.93 2.97
2093 2113 1.002430 CTGGCTGTGGTGAGAAAGCTA 59.998 52.381 0.00 0.00 35.93 3.32
2101 2121 1.981951 TTCTGTGCTGGCTGTGGTGA 61.982 55.000 0.00 0.00 0.00 4.02
2118 2138 1.230324 GGGTGTGTCAGAAGCAGTTC 58.770 55.000 0.00 0.00 0.00 3.01
2120 2140 0.179045 GTGGGTGTGTCAGAAGCAGT 60.179 55.000 0.00 0.00 0.00 4.40
2122 2142 0.254462 TTGTGGGTGTGTCAGAAGCA 59.746 50.000 0.00 0.00 0.00 3.91
2194 2215 4.463891 AGAAATGTCCAATTTTGCTCGGAT 59.536 37.500 0.00 0.00 0.00 4.18
2224 2246 7.872993 TGCCTACAAAATATGCTATGAGACTAC 59.127 37.037 0.00 0.00 0.00 2.73
2238 2260 4.814234 CACCTAGCGATTGCCTACAAAATA 59.186 41.667 0.00 0.00 44.31 1.40
2244 2266 1.134788 ACACACCTAGCGATTGCCTAC 60.135 52.381 0.00 0.00 44.31 3.18
2253 2275 2.047274 CCCCACACACACCTAGCG 60.047 66.667 0.00 0.00 0.00 4.26
2272 2294 0.618458 TGTATTCAGGTGGGGACTGC 59.382 55.000 0.00 0.00 35.94 4.40
2290 2312 1.737236 TCCGGATCGTTTTGAGCAATG 59.263 47.619 0.00 0.00 33.60 2.82
2291 2313 2.009774 CTCCGGATCGTTTTGAGCAAT 58.990 47.619 3.57 0.00 33.60 3.56
2303 2325 2.746359 CCCTGCATCCTCCGGATC 59.254 66.667 3.57 0.00 40.98 3.36
2304 2326 2.679619 TAGCCCTGCATCCTCCGGAT 62.680 60.000 3.57 0.00 44.21 4.18
2305 2327 3.389139 TAGCCCTGCATCCTCCGGA 62.389 63.158 2.93 2.93 35.55 5.14
2306 2328 2.844362 TAGCCCTGCATCCTCCGG 60.844 66.667 0.00 0.00 0.00 5.14
2307 2329 2.739784 CTAGCCCTGCATCCTCCG 59.260 66.667 0.00 0.00 0.00 4.63
2312 2335 1.981495 AGGAATACCTAGCCCTGCATC 59.019 52.381 0.00 0.00 45.83 3.91
2374 2397 4.033129 CCAATTTGCTTATTGGTTGCATCG 59.967 41.667 17.30 0.00 46.19 3.84
2383 2406 7.799447 CACAACATTGTTCCAATTTGCTTATTG 59.201 33.333 0.00 4.87 39.91 1.90
2386 2409 6.577103 TCACAACATTGTTCCAATTTGCTTA 58.423 32.000 0.00 0.00 39.91 3.09
2388 2411 5.021033 TCACAACATTGTTCCAATTTGCT 57.979 34.783 0.00 0.00 39.91 3.91
2390 2413 6.313411 ACAGTTCACAACATTGTTCCAATTTG 59.687 34.615 0.00 0.00 39.91 2.32
2427 2451 4.248859 AGTGTTCAGGAATGTCGATCAAG 58.751 43.478 0.00 0.00 0.00 3.02
2441 2465 3.100817 CGCAAAGTGTCAAAGTGTTCAG 58.899 45.455 0.00 0.00 0.00 3.02
2453 2477 1.747325 ATTTGGGCAGCGCAAAGTGT 61.747 50.000 33.16 19.80 46.26 3.55
2500 2525 7.723172 ACTTCAATGGAGTTCTCTCAAAGAAAT 59.277 33.333 0.00 0.00 45.50 2.17
2501 2526 7.056635 ACTTCAATGGAGTTCTCTCAAAGAAA 58.943 34.615 0.00 0.00 45.50 2.52
2504 2529 6.874288 AACTTCAATGGAGTTCTCTCAAAG 57.126 37.500 0.06 0.00 42.05 2.77
2508 2533 6.484977 ACAAGAAACTTCAATGGAGTTCTCTC 59.515 38.462 7.47 2.05 39.76 3.20
2509 2534 6.360618 ACAAGAAACTTCAATGGAGTTCTCT 58.639 36.000 7.47 9.69 0.00 3.10
2522 2549 5.291614 TGCTCAAATGCAAACAAGAAACTTC 59.708 36.000 0.00 0.00 40.29 3.01
2545 2572 4.442192 GGGCAGATTAGTAACCTGAGAGTG 60.442 50.000 8.57 0.00 0.00 3.51
2549 2576 5.128827 TGTTAGGGCAGATTAGTAACCTGAG 59.871 44.000 8.57 0.00 0.00 3.35
2553 2580 5.354842 ACTGTTAGGGCAGATTAGTAACC 57.645 43.478 0.00 0.00 39.62 2.85
2555 2582 7.484993 TTGTACTGTTAGGGCAGATTAGTAA 57.515 36.000 0.00 0.00 39.62 2.24
2556 2583 7.484993 TTTGTACTGTTAGGGCAGATTAGTA 57.515 36.000 0.00 0.00 39.62 1.82
2557 2584 6.368779 TTTGTACTGTTAGGGCAGATTAGT 57.631 37.500 0.00 0.00 39.62 2.24
2567 2594 3.003480 GAGGCTGCTTTGTACTGTTAGG 58.997 50.000 0.00 0.00 0.00 2.69
2570 2597 2.104792 TCAGAGGCTGCTTTGTACTGTT 59.895 45.455 0.00 0.00 0.00 3.16
2571 2598 1.694150 TCAGAGGCTGCTTTGTACTGT 59.306 47.619 0.00 0.00 0.00 3.55
2572 2599 2.072298 GTCAGAGGCTGCTTTGTACTG 58.928 52.381 0.00 0.00 0.00 2.74
2573 2600 1.974236 AGTCAGAGGCTGCTTTGTACT 59.026 47.619 0.00 0.00 0.00 2.73
2574 2601 2.464157 AGTCAGAGGCTGCTTTGTAC 57.536 50.000 0.00 0.00 0.00 2.90
2593 2620 7.664082 ACATCACAACAAACAAAAACATCAA 57.336 28.000 0.00 0.00 0.00 2.57
2610 2638 0.320683 CTGGACCGCTGAACATCACA 60.321 55.000 0.00 0.00 0.00 3.58
2611 2639 0.320771 ACTGGACCGCTGAACATCAC 60.321 55.000 0.00 0.00 0.00 3.06
2622 2650 2.985896 ACCATAACATGAACTGGACCG 58.014 47.619 15.70 0.00 32.92 4.79
2632 2660 3.131046 GGGCTTTCCAGAACCATAACATG 59.869 47.826 0.00 0.00 35.00 3.21
2633 2661 3.365472 GGGCTTTCCAGAACCATAACAT 58.635 45.455 0.00 0.00 35.00 2.71
2636 2664 1.340600 CGGGGCTTTCCAGAACCATAA 60.341 52.381 0.00 0.00 37.22 1.90
2674 2702 4.934356 TCAGTTGGCCCTATCAAAATTCT 58.066 39.130 0.00 0.00 0.00 2.40
2678 2706 2.760092 GCATCAGTTGGCCCTATCAAAA 59.240 45.455 0.00 0.00 0.00 2.44
2743 2771 7.993183 AGGTGTTCTCAACTAGAAAAAGAATGA 59.007 33.333 0.00 0.00 45.78 2.57
2886 2915 1.871039 TCGCTTACGCTTTCTGCTTTT 59.129 42.857 0.00 0.00 40.11 2.27
2892 2921 1.352156 CCGCTTCGCTTACGCTTTCT 61.352 55.000 0.00 0.00 39.84 2.52
2995 3043 4.864704 TGTGCCAAGTTTCCTATTTTCC 57.135 40.909 0.00 0.00 0.00 3.13
3007 3055 3.168035 TCAATTACCCATGTGCCAAGT 57.832 42.857 0.00 0.00 0.00 3.16
3029 3077 6.051717 GTGTGAACTGTATTCTGGATGCTAT 58.948 40.000 0.00 0.00 0.00 2.97
3037 3085 5.178061 TGCTATGGTGTGAACTGTATTCTG 58.822 41.667 0.00 0.00 0.00 3.02
3038 3086 5.420725 TGCTATGGTGTGAACTGTATTCT 57.579 39.130 0.00 0.00 0.00 2.40
3039 3087 6.072728 TGTTTGCTATGGTGTGAACTGTATTC 60.073 38.462 0.00 0.00 0.00 1.75
3054 3102 2.229792 ACCTGGTGTGTGTTTGCTATG 58.770 47.619 0.00 0.00 0.00 2.23
3063 3111 1.806542 GCTATGTGAACCTGGTGTGTG 59.193 52.381 0.00 0.00 0.00 3.82
3067 3115 1.470098 GCTTGCTATGTGAACCTGGTG 59.530 52.381 0.00 0.00 0.00 4.17
3069 3117 1.825090 TGCTTGCTATGTGAACCTGG 58.175 50.000 0.00 0.00 0.00 4.45
3077 3125 9.757227 TTTTAGTTGTTATTTTGCTTGCTATGT 57.243 25.926 0.00 0.00 0.00 2.29
3125 3173 4.380655 GCCACGCGATCTCTATTAGGTTAT 60.381 45.833 15.93 0.00 0.00 1.89
3134 3182 1.035385 TTCTGGCCACGCGATCTCTA 61.035 55.000 15.93 0.00 0.00 2.43
3138 3186 0.451783 AAAATTCTGGCCACGCGATC 59.548 50.000 15.93 0.00 0.00 3.69
3142 3190 1.737735 GGCAAAATTCTGGCCACGC 60.738 57.895 0.00 0.00 46.92 5.34
3143 3191 4.576993 GGCAAAATTCTGGCCACG 57.423 55.556 0.00 0.00 46.92 4.94
3148 3196 6.097270 TCCTTCATATTCTGGCAAAATTCTGG 59.903 38.462 0.00 0.00 0.00 3.86
3182 3230 5.201713 TCTTATAATCAGGCTCTGTTCGG 57.798 43.478 2.68 0.00 32.61 4.30
3183 3231 8.818141 TTTATCTTATAATCAGGCTCTGTTCG 57.182 34.615 2.68 0.00 32.61 3.95
3189 3237 7.928307 TGCCATTTATCTTATAATCAGGCTC 57.072 36.000 0.00 0.00 39.10 4.70
3228 3276 2.346766 TTTCTGCTTGTCTCCTTGCA 57.653 45.000 0.00 0.00 0.00 4.08
3229 3277 4.006319 ACTATTTCTGCTTGTCTCCTTGC 58.994 43.478 0.00 0.00 0.00 4.01
3234 3282 7.915397 TGTTTTTGAACTATTTCTGCTTGTCTC 59.085 33.333 0.00 0.00 32.36 3.36
3239 3287 5.985530 GGCTGTTTTTGAACTATTTCTGCTT 59.014 36.000 0.00 0.00 32.36 3.91
3247 3295 7.929159 CCAAAATTTGGCTGTTTTTGAACTAT 58.071 30.769 12.23 0.00 45.17 2.12
3286 3339 1.485066 CCCTACGTGGTGGATTAAGCT 59.515 52.381 0.00 0.00 0.00 3.74
3295 3348 1.579429 GCTTTTGCCCTACGTGGTG 59.421 57.895 0.00 0.00 40.15 4.17
3299 3352 1.574702 GCTTCGCTTTTGCCCTACGT 61.575 55.000 0.00 0.00 43.93 3.57
3301 3354 1.134694 CGCTTCGCTTTTGCCCTAC 59.865 57.895 0.00 0.00 43.93 3.18
3388 3441 8.200792 AGAGTTAGGTTCAAGCTCATTATAGTG 58.799 37.037 0.00 0.00 0.00 2.74
3390 3443 9.606631 AAAGAGTTAGGTTCAAGCTCATTATAG 57.393 33.333 0.00 0.00 0.00 1.31
3391 3444 9.601217 GAAAGAGTTAGGTTCAAGCTCATTATA 57.399 33.333 0.00 0.00 0.00 0.98
3416 3472 6.927416 ACATGAATTGCAAAAGCATAGAAGA 58.073 32.000 1.71 0.00 0.00 2.87
3485 3542 3.576078 TTTTTCTCAGAGTCCAAGCCA 57.424 42.857 0.00 0.00 0.00 4.75
3529 3586 2.437180 CTCTGGCCGCAGATTGCA 60.437 61.111 0.00 0.00 45.36 4.08
3539 3596 5.911378 AGAAAAATGAAATCTCTCTGGCC 57.089 39.130 0.00 0.00 0.00 5.36
3554 3611 8.844244 CCAGATTTATCATCTCCGAAGAAAAAT 58.156 33.333 0.00 0.00 34.49 1.82
3582 3639 7.864379 ACTAATCAAATGAAAGCAAAGACACTG 59.136 33.333 0.00 0.00 0.00 3.66
3583 3640 7.945134 ACTAATCAAATGAAAGCAAAGACACT 58.055 30.769 0.00 0.00 0.00 3.55
3609 3666 9.312904 TCAGAAAATTCAAGGTTAATCTCCAAT 57.687 29.630 0.00 0.00 0.00 3.16
3644 3702 3.609853 CAGGGCTTCTGCATTTGTAGTA 58.390 45.455 0.00 0.00 41.91 1.82
3650 3708 1.260544 GTTCCAGGGCTTCTGCATTT 58.739 50.000 0.00 0.00 42.05 2.32
3662 3720 2.414994 ACAGCTCATCATGTTCCAGG 57.585 50.000 0.00 0.00 0.00 4.45
3674 3732 2.857186 TGCCAATTGTCTACAGCTCA 57.143 45.000 4.43 0.00 0.00 4.26
3696 3754 5.178996 CAGAATTATCTGCCTTTCGAGGATG 59.821 44.000 0.00 0.00 46.11 3.51
3718 3776 4.265073 CTGGAAGGGGTATCAAACTTCAG 58.735 47.826 0.00 0.00 40.72 3.02
3730 3789 3.460825 TCAACTAATAGCTGGAAGGGGT 58.539 45.455 0.00 0.00 0.00 4.95
3758 3819 9.433153 AGATCAGTATCATGTAATGCACATAAG 57.567 33.333 0.00 0.00 46.47 1.73
3774 3835 8.973378 GCAGAAGTGTAATGTTAGATCAGTATC 58.027 37.037 0.00 0.00 0.00 2.24
3775 3836 8.478066 TGCAGAAGTGTAATGTTAGATCAGTAT 58.522 33.333 0.00 0.00 0.00 2.12
3776 3837 7.759886 GTGCAGAAGTGTAATGTTAGATCAGTA 59.240 37.037 0.00 0.00 0.00 2.74
3777 3838 6.591834 GTGCAGAAGTGTAATGTTAGATCAGT 59.408 38.462 0.00 0.00 0.00 3.41
3778 3839 6.815641 AGTGCAGAAGTGTAATGTTAGATCAG 59.184 38.462 0.00 0.00 0.00 2.90
3785 3846 6.128172 GCTATCAAGTGCAGAAGTGTAATGTT 60.128 38.462 0.00 0.00 0.00 2.71
3790 3851 4.808414 AGCTATCAAGTGCAGAAGTGTA 57.192 40.909 0.00 0.00 0.00 2.90
3792 3853 3.999001 TGAAGCTATCAAGTGCAGAAGTG 59.001 43.478 0.00 0.00 34.30 3.16
3799 3860 3.205784 AGGGATGAAGCTATCAAGTGC 57.794 47.619 0.00 0.00 42.54 4.40
3802 3863 3.117738 ACCCAAGGGATGAAGCTATCAAG 60.118 47.826 13.15 0.00 39.16 3.02
3841 3902 7.151308 ACAAAATTTCGCTATGGTGATTTCAA 58.849 30.769 0.00 0.00 0.00 2.69
3853 3914 4.320202 GGAGTGCTTGACAAAATTTCGCTA 60.320 41.667 0.00 0.00 0.00 4.26
3880 3941 1.072489 TGGGACACGGCAATCAGTTAA 59.928 47.619 0.00 0.00 0.00 2.01
3891 3952 6.511121 CGATTATATTTTGAACTGGGACACGG 60.511 42.308 0.00 0.00 0.00 4.94
3892 3953 6.036735 ACGATTATATTTTGAACTGGGACACG 59.963 38.462 0.00 0.00 0.00 4.49
3912 4004 8.840321 CCATAGGATTTTTATCAACAGACGATT 58.160 33.333 0.00 0.00 0.00 3.34
3913 4005 7.445402 CCCATAGGATTTTTATCAACAGACGAT 59.555 37.037 0.00 0.00 33.47 3.73
3916 4008 7.881775 ACCCATAGGATTTTTATCAACAGAC 57.118 36.000 0.00 0.00 36.73 3.51
3917 4009 8.893563 AAACCCATAGGATTTTTATCAACAGA 57.106 30.769 0.00 0.00 36.73 3.41
3947 4158 1.881973 GATCAAGCCAGACAGTGCAAA 59.118 47.619 0.00 0.00 0.00 3.68
3948 4159 1.202794 TGATCAAGCCAGACAGTGCAA 60.203 47.619 0.00 0.00 0.00 4.08
3949 4160 0.397564 TGATCAAGCCAGACAGTGCA 59.602 50.000 0.00 0.00 0.00 4.57
3950 4161 1.400846 CATGATCAAGCCAGACAGTGC 59.599 52.381 0.00 0.00 0.00 4.40
3951 4162 1.400846 GCATGATCAAGCCAGACAGTG 59.599 52.381 11.87 0.00 0.00 3.66
3994 4206 4.218200 TGCATTCCATGAACTAACAAGTGG 59.782 41.667 0.00 0.00 0.00 4.00
4007 4219 2.223735 GCATCTGAACCTGCATTCCATG 60.224 50.000 0.00 0.00 38.28 3.66
4021 4481 3.455543 TCCACATGGATTACTGCATCTGA 59.544 43.478 0.00 0.00 39.78 3.27
4046 4506 1.614903 CAAATGGCAGCTTTGGTCTCA 59.385 47.619 5.80 0.00 31.43 3.27
4051 4511 1.738830 CCGCAAATGGCAGCTTTGG 60.739 57.895 13.71 5.71 45.17 3.28
4068 4528 6.528072 GCTGTTACTCAAGCATGTTATTTTCC 59.472 38.462 0.00 0.00 0.00 3.13
4242 7075 6.480763 TCCCTACACATCTTTTGCATCTTAA 58.519 36.000 0.00 0.00 0.00 1.85
4273 7106 6.183360 GGGTACTACTTCTAACTCATCACTGG 60.183 46.154 0.00 0.00 0.00 4.00
4277 7110 6.728411 TCAGGGTACTACTTCTAACTCATCA 58.272 40.000 0.00 0.00 0.00 3.07
4289 7175 6.729569 ACCAAAAGTTCTATCAGGGTACTACT 59.270 38.462 0.00 0.00 0.00 2.57
4290 7176 6.944096 ACCAAAAGTTCTATCAGGGTACTAC 58.056 40.000 0.00 0.00 0.00 2.73
4291 7177 6.958192 AGACCAAAAGTTCTATCAGGGTACTA 59.042 38.462 0.00 0.00 0.00 1.82
4361 7247 5.186996 ACACAACTTCAAGTAAGCATTGG 57.813 39.130 0.00 0.00 38.93 3.16
4378 7264 1.876799 CGGCACAATTGGACTACACAA 59.123 47.619 10.83 0.00 0.00 3.33
4581 7469 7.112122 TCAGTATGACAGGCATGATAAAAAGT 58.888 34.615 4.84 0.00 42.56 2.66
4582 7470 7.558161 TCAGTATGACAGGCATGATAAAAAG 57.442 36.000 4.84 0.00 42.56 2.27
4617 7505 4.434713 AAGGTGCATTTTGATTCGGTAC 57.565 40.909 0.00 0.00 0.00 3.34
4618 7506 5.004448 TGTAAGGTGCATTTTGATTCGGTA 58.996 37.500 0.00 0.00 0.00 4.02
4619 7507 3.823873 TGTAAGGTGCATTTTGATTCGGT 59.176 39.130 0.00 0.00 0.00 4.69
4620 7508 4.433186 TGTAAGGTGCATTTTGATTCGG 57.567 40.909 0.00 0.00 0.00 4.30
4621 7509 6.949578 AAATGTAAGGTGCATTTTGATTCG 57.050 33.333 0.00 0.00 41.96 3.34
4623 7511 8.998377 GGTTTAAATGTAAGGTGCATTTTGATT 58.002 29.630 9.14 0.00 41.96 2.57
4624 7512 8.374743 AGGTTTAAATGTAAGGTGCATTTTGAT 58.625 29.630 9.14 0.00 41.96 2.57
4625 7513 7.655328 CAGGTTTAAATGTAAGGTGCATTTTGA 59.345 33.333 9.14 0.00 41.96 2.69
4626 7514 7.655328 TCAGGTTTAAATGTAAGGTGCATTTTG 59.345 33.333 9.14 2.98 41.96 2.44
4627 7515 7.731054 TCAGGTTTAAATGTAAGGTGCATTTT 58.269 30.769 9.14 0.00 41.96 1.82
4628 7516 7.296628 TCAGGTTTAAATGTAAGGTGCATTT 57.703 32.000 8.90 8.90 45.22 2.32
4629 7517 6.909550 TCAGGTTTAAATGTAAGGTGCATT 57.090 33.333 0.00 0.00 38.09 3.56
4630 7518 6.572314 GCTTCAGGTTTAAATGTAAGGTGCAT 60.572 38.462 0.00 0.00 0.00 3.96
4631 7519 5.278758 GCTTCAGGTTTAAATGTAAGGTGCA 60.279 40.000 0.00 0.00 0.00 4.57
4658 7546 0.179936 GAGTGGATGCAGGAGGAAGG 59.820 60.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.