Multiple sequence alignment - TraesCS7B01G282100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G282100 chr7B 100.000 3396 0 0 938 4333 516463112 516466507 0.000000e+00 6272.0
1 TraesCS7B01G282100 chr7B 100.000 671 0 0 1 671 516462175 516462845 0.000000e+00 1240.0
2 TraesCS7B01G282100 chr7B 92.015 814 53 3 1912 2720 435789395 435790201 0.000000e+00 1133.0
3 TraesCS7B01G282100 chr7B 88.552 594 38 16 2800 3387 435790248 435790817 0.000000e+00 693.0
4 TraesCS7B01G282100 chr7B 83.920 398 48 12 13 404 389086120 389086507 2.460000e-97 366.0
5 TraesCS7B01G282100 chr7B 85.567 194 26 2 224 416 718831122 718831314 7.350000e-48 202.0
6 TraesCS7B01G282100 chr7D 93.294 1849 73 19 949 2772 487737996 487739818 0.000000e+00 2680.0
7 TraesCS7B01G282100 chr7D 90.205 1460 100 22 1935 3387 419767315 419768738 0.000000e+00 1864.0
8 TraesCS7B01G282100 chr7D 89.474 1178 51 29 2808 3929 487739819 487740979 0.000000e+00 1421.0
9 TraesCS7B01G282100 chr7D 88.776 196 16 6 473 663 487737790 487737984 7.240000e-58 235.0
10 TraesCS7B01G282100 chr7D 95.745 141 5 1 3928 4068 487752037 487752176 4.360000e-55 226.0
11 TraesCS7B01G282100 chr7D 82.632 190 18 4 945 1120 419765501 419765689 2.090000e-33 154.0
12 TraesCS7B01G282100 chr7A 89.726 1421 98 22 1904 3318 513415489 513414111 0.000000e+00 1772.0
13 TraesCS7B01G282100 chr7A 90.978 1186 62 15 1606 2772 555649802 555650961 0.000000e+00 1555.0
14 TraesCS7B01G282100 chr7A 89.419 860 33 18 2808 3630 555650962 555651800 0.000000e+00 1031.0
15 TraesCS7B01G282100 chr7A 89.744 507 27 11 949 1445 555649015 555649506 3.680000e-175 625.0
16 TraesCS7B01G282100 chr7A 89.749 439 19 8 3627 4061 555652069 555652485 4.930000e-149 538.0
17 TraesCS7B01G282100 chr7A 75.882 510 73 28 1177 1674 513417239 513416768 9.440000e-52 215.0
18 TraesCS7B01G282100 chr7A 89.222 167 13 5 494 658 555648846 555649009 2.040000e-48 204.0
19 TraesCS7B01G282100 chr7A 88.372 172 12 3 957 1120 513417562 513417391 2.640000e-47 200.0
20 TraesCS7B01G282100 chr7A 90.226 133 11 2 1479 1610 555649505 555649636 5.760000e-39 172.0
21 TraesCS7B01G282100 chr7A 96.970 33 0 1 4263 4295 555652713 555652744 2.000000e-03 54.7
22 TraesCS7B01G282100 chr6A 90.131 689 68 0 2037 2725 595025232 595024544 0.000000e+00 896.0
23 TraesCS7B01G282100 chr6A 89.898 683 68 1 2037 2719 595048852 595048171 0.000000e+00 878.0
24 TraesCS7B01G282100 chr6A 89.796 196 19 1 2826 3020 595024360 595024165 2.590000e-62 250.0
25 TraesCS7B01G282100 chr6A 86.636 217 24 3 2826 3037 595047919 595047703 7.240000e-58 235.0
26 TraesCS7B01G282100 chr6A 86.667 195 25 1 241 434 108212131 108212325 9.440000e-52 215.0
27 TraesCS7B01G282100 chr6A 92.063 126 9 1 996 1120 595052108 595051983 4.450000e-40 176.0
28 TraesCS7B01G282100 chr6A 88.976 127 4 2 995 1120 595070461 595070578 9.710000e-32 148.0
29 TraesCS7B01G282100 chr6B 89.912 684 66 1 2037 2720 680860950 680861630 0.000000e+00 878.0
30 TraesCS7B01G282100 chr6B 85.178 533 46 14 2826 3325 680778068 680777536 2.310000e-142 516.0
31 TraesCS7B01G282100 chr6B 85.283 530 45 15 2826 3322 680862194 680862723 2.310000e-142 516.0
32 TraesCS7B01G282100 chr6B 83.942 137 9 4 979 1111 680809150 680809277 7.610000e-23 119.0
33 TraesCS7B01G282100 chr6D 89.451 692 70 1 2037 2728 449187463 449186775 0.000000e+00 870.0
34 TraesCS7B01G282100 chr6D 84.743 544 38 21 2826 3325 449252814 449253356 1.800000e-138 503.0
35 TraesCS7B01G282100 chr6D 94.118 221 13 0 3107 3327 449216573 449216353 1.930000e-88 337.0
36 TraesCS7B01G282100 chr6D 89.831 118 3 1 995 1112 449221357 449221249 4.520000e-30 143.0
37 TraesCS7B01G282100 chr6D 89.076 119 4 1 995 1113 449247482 449247591 5.840000e-29 139.0
38 TraesCS7B01G282100 chr6D 88.983 118 4 1 995 1112 449189470 449189362 2.100000e-28 137.0
39 TraesCS7B01G282100 chr5D 85.877 439 44 12 1 434 528554629 528555054 6.610000e-123 451.0
40 TraesCS7B01G282100 chr1D 84.739 249 29 6 224 466 10511084 10510839 1.560000e-59 241.0
41 TraesCS7B01G282100 chr1B 78.701 385 65 14 1 381 603565163 603565534 1.560000e-59 241.0
42 TraesCS7B01G282100 chr4D 86.792 212 23 4 224 434 473746135 473745928 9.370000e-57 231.0
43 TraesCS7B01G282100 chr1A 84.651 215 29 4 222 434 316890980 316891192 1.220000e-50 211.0
44 TraesCS7B01G282100 chr4A 80.000 155 22 8 221 371 403381226 403381077 5.930000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G282100 chr7B 516462175 516466507 4332 False 3756.000000 6272 100.000000 1 4333 2 chr7B.!!$F4 4332
1 TraesCS7B01G282100 chr7B 435789395 435790817 1422 False 913.000000 1133 90.283500 1912 3387 2 chr7B.!!$F3 1475
2 TraesCS7B01G282100 chr7D 487737790 487740979 3189 False 1445.333333 2680 90.514667 473 3929 3 chr7D.!!$F3 3456
3 TraesCS7B01G282100 chr7D 419765501 419768738 3237 False 1009.000000 1864 86.418500 945 3387 2 chr7D.!!$F2 2442
4 TraesCS7B01G282100 chr7A 513414111 513417562 3451 True 729.000000 1772 84.660000 957 3318 3 chr7A.!!$R1 2361
5 TraesCS7B01G282100 chr7A 555648846 555652744 3898 False 597.100000 1555 90.901143 494 4295 7 chr7A.!!$F1 3801
6 TraesCS7B01G282100 chr6A 595024165 595025232 1067 True 573.000000 896 89.963500 2037 3020 2 chr6A.!!$R1 983
7 TraesCS7B01G282100 chr6A 595047703 595052108 4405 True 429.666667 878 89.532333 996 3037 3 chr6A.!!$R2 2041
8 TraesCS7B01G282100 chr6B 680860950 680862723 1773 False 697.000000 878 87.597500 2037 3322 2 chr6B.!!$F2 1285
9 TraesCS7B01G282100 chr6B 680777536 680778068 532 True 516.000000 516 85.178000 2826 3325 1 chr6B.!!$R1 499
10 TraesCS7B01G282100 chr6D 449186775 449189470 2695 True 503.500000 870 89.217000 995 2728 2 chr6D.!!$R3 1733
11 TraesCS7B01G282100 chr6D 449252814 449253356 542 False 503.000000 503 84.743000 2826 3325 1 chr6D.!!$F2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 457 0.109086 CGACCTCTGCGCCATATAGG 60.109 60.0 4.18 7.00 41.84 2.57 F
971 977 0.114364 AATTTCCGGGGGTTGCTCTT 59.886 50.0 0.00 0.00 0.00 2.85 F
1821 4277 0.394762 GGTTGATGGATGGCTGCAGA 60.395 55.0 20.43 0.00 0.00 4.26 F
2740 6371 1.775869 CCGATGTGTCCGATCATCAG 58.224 55.0 13.29 8.22 39.99 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 4210 0.105964 TGGCGCGGCTATGATAAGTT 59.894 50.0 33.23 0.0 0.00 2.66 R
1908 4816 0.601576 AGTCATGCGTGCAAACGGTA 60.602 50.0 0.00 0.0 0.00 4.02 R
3327 7181 0.969149 TGGCAGTCAGTCGATCACTT 59.031 50.0 0.00 0.0 30.26 3.16 R
4302 8574 0.036105 ATGAACAGCGACTGCATGGA 60.036 50.0 6.74 0.0 46.23 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.973450 TTCATGATTTTTAAAATCGTTGAAGGA 57.027 25.926 26.50 17.43 32.53 3.36
91 92 8.833231 TGTTACCTTTTTCAAAACAATGTTCA 57.167 26.923 0.00 0.00 0.00 3.18
92 93 8.930760 TGTTACCTTTTTCAAAACAATGTTCAG 58.069 29.630 0.00 0.00 0.00 3.02
93 94 6.983474 ACCTTTTTCAAAACAATGTTCAGG 57.017 33.333 0.00 0.00 0.00 3.86
94 95 6.706295 ACCTTTTTCAAAACAATGTTCAGGA 58.294 32.000 0.00 0.00 0.00 3.86
95 96 7.164803 ACCTTTTTCAAAACAATGTTCAGGAA 58.835 30.769 0.00 1.29 0.00 3.36
96 97 7.828717 ACCTTTTTCAAAACAATGTTCAGGAAT 59.171 29.630 0.00 0.00 0.00 3.01
97 98 8.676401 CCTTTTTCAAAACAATGTTCAGGAATT 58.324 29.630 0.00 0.00 0.00 2.17
99 100 9.837525 TTTTTCAAAACAATGTTCAGGAATTTG 57.162 25.926 0.00 0.00 0.00 2.32
100 101 8.558973 TTTCAAAACAATGTTCAGGAATTTGT 57.441 26.923 0.00 7.21 33.71 2.83
101 102 9.658799 TTTCAAAACAATGTTCAGGAATTTGTA 57.341 25.926 0.00 0.00 32.74 2.41
102 103 9.658799 TTCAAAACAATGTTCAGGAATTTGTAA 57.341 25.926 0.00 0.00 32.74 2.41
103 104 9.658799 TCAAAACAATGTTCAGGAATTTGTAAA 57.341 25.926 0.00 0.00 32.74 2.01
125 126 6.442513 AAAAATGGTCGGCAATTTGAAAAA 57.557 29.167 2.45 0.00 29.19 1.94
126 127 6.631971 AAAATGGTCGGCAATTTGAAAAAT 57.368 29.167 2.45 0.00 29.19 1.82
127 128 7.736447 AAAATGGTCGGCAATTTGAAAAATA 57.264 28.000 2.45 0.00 29.19 1.40
128 129 7.920160 AAATGGTCGGCAATTTGAAAAATAT 57.080 28.000 0.45 0.00 27.63 1.28
129 130 7.920160 AATGGTCGGCAATTTGAAAAATATT 57.080 28.000 0.00 0.00 0.00 1.28
130 131 6.718454 TGGTCGGCAATTTGAAAAATATTG 57.282 33.333 0.00 0.00 33.49 1.90
131 132 6.226787 TGGTCGGCAATTTGAAAAATATTGT 58.773 32.000 0.00 0.00 33.04 2.71
132 133 7.378966 TGGTCGGCAATTTGAAAAATATTGTA 58.621 30.769 0.00 0.00 33.04 2.41
133 134 7.872993 TGGTCGGCAATTTGAAAAATATTGTAA 59.127 29.630 0.00 0.00 33.04 2.41
134 135 8.878769 GGTCGGCAATTTGAAAAATATTGTAAT 58.121 29.630 0.00 0.00 33.04 1.89
170 171 9.921637 AGTTCACAACTTAAGAAAATTTGTTGA 57.078 25.926 18.38 6.69 39.04 3.18
171 172 9.952341 GTTCACAACTTAAGAAAATTTGTTGAC 57.048 29.630 18.38 6.17 38.36 3.18
172 173 9.698309 TTCACAACTTAAGAAAATTTGTTGACA 57.302 25.926 18.38 6.26 38.36 3.58
173 174 9.698309 TCACAACTTAAGAAAATTTGTTGACAA 57.302 25.926 18.38 0.00 38.36 3.18
187 188 7.418840 TTTGTTGACAAAATTGATACATGGC 57.581 32.000 6.82 0.00 42.26 4.40
188 189 5.477510 TGTTGACAAAATTGATACATGGCC 58.522 37.500 0.00 0.00 0.00 5.36
189 190 4.368874 TGACAAAATTGATACATGGCCG 57.631 40.909 0.00 0.00 0.00 6.13
190 191 4.013050 TGACAAAATTGATACATGGCCGA 58.987 39.130 0.00 0.00 0.00 5.54
191 192 4.460731 TGACAAAATTGATACATGGCCGAA 59.539 37.500 0.00 0.00 0.00 4.30
192 193 4.743493 ACAAAATTGATACATGGCCGAAC 58.257 39.130 0.00 0.00 0.00 3.95
193 194 4.462483 ACAAAATTGATACATGGCCGAACT 59.538 37.500 0.00 0.00 0.00 3.01
194 195 5.047377 ACAAAATTGATACATGGCCGAACTT 60.047 36.000 0.00 0.00 0.00 2.66
195 196 4.900635 AATTGATACATGGCCGAACTTC 57.099 40.909 0.00 0.00 0.00 3.01
196 197 3.627395 TTGATACATGGCCGAACTTCT 57.373 42.857 0.00 0.00 0.00 2.85
197 198 3.627395 TGATACATGGCCGAACTTCTT 57.373 42.857 0.00 0.00 0.00 2.52
198 199 3.950397 TGATACATGGCCGAACTTCTTT 58.050 40.909 0.00 0.00 0.00 2.52
199 200 4.331968 TGATACATGGCCGAACTTCTTTT 58.668 39.130 0.00 0.00 0.00 2.27
200 201 5.492895 TGATACATGGCCGAACTTCTTTTA 58.507 37.500 0.00 0.00 0.00 1.52
201 202 5.584649 TGATACATGGCCGAACTTCTTTTAG 59.415 40.000 0.00 0.00 0.00 1.85
202 203 3.081804 ACATGGCCGAACTTCTTTTAGG 58.918 45.455 0.00 0.00 0.00 2.69
203 204 3.244770 ACATGGCCGAACTTCTTTTAGGA 60.245 43.478 0.00 0.00 0.00 2.94
204 205 3.495434 TGGCCGAACTTCTTTTAGGAA 57.505 42.857 0.00 0.00 0.00 3.36
205 206 3.822940 TGGCCGAACTTCTTTTAGGAAA 58.177 40.909 0.00 0.00 0.00 3.13
206 207 3.818773 TGGCCGAACTTCTTTTAGGAAAG 59.181 43.478 0.00 0.00 42.92 2.62
207 208 3.190744 GGCCGAACTTCTTTTAGGAAAGG 59.809 47.826 0.00 0.00 42.05 3.11
208 209 3.819337 GCCGAACTTCTTTTAGGAAAGGT 59.181 43.478 0.00 0.00 42.05 3.50
209 210 4.320275 GCCGAACTTCTTTTAGGAAAGGTG 60.320 45.833 0.00 0.00 42.05 4.00
210 211 5.061179 CCGAACTTCTTTTAGGAAAGGTGA 58.939 41.667 0.00 0.00 42.05 4.02
211 212 5.529800 CCGAACTTCTTTTAGGAAAGGTGAA 59.470 40.000 0.00 0.00 42.05 3.18
212 213 6.038936 CCGAACTTCTTTTAGGAAAGGTGAAA 59.961 38.462 0.00 0.00 42.05 2.69
213 214 7.415877 CCGAACTTCTTTTAGGAAAGGTGAAAA 60.416 37.037 0.00 0.00 42.05 2.29
214 215 8.135529 CGAACTTCTTTTAGGAAAGGTGAAAAT 58.864 33.333 0.00 0.00 42.05 1.82
218 219 9.914131 CTTCTTTTAGGAAAGGTGAAAATAAGG 57.086 33.333 0.00 0.00 42.05 2.69
219 220 8.417273 TCTTTTAGGAAAGGTGAAAATAAGGG 57.583 34.615 0.00 0.00 42.05 3.95
220 221 7.453439 TCTTTTAGGAAAGGTGAAAATAAGGGG 59.547 37.037 0.00 0.00 42.05 4.79
221 222 6.471942 TTAGGAAAGGTGAAAATAAGGGGA 57.528 37.500 0.00 0.00 0.00 4.81
222 223 5.348259 AGGAAAGGTGAAAATAAGGGGAA 57.652 39.130 0.00 0.00 0.00 3.97
223 224 5.722290 AGGAAAGGTGAAAATAAGGGGAAA 58.278 37.500 0.00 0.00 0.00 3.13
224 225 6.147473 AGGAAAGGTGAAAATAAGGGGAAAA 58.853 36.000 0.00 0.00 0.00 2.29
225 226 6.617784 AGGAAAGGTGAAAATAAGGGGAAAAA 59.382 34.615 0.00 0.00 0.00 1.94
294 295 7.878547 TCGGTAAAGGTAAAAAGAAAAAGGA 57.121 32.000 0.00 0.00 0.00 3.36
295 296 8.291191 TCGGTAAAGGTAAAAAGAAAAAGGAA 57.709 30.769 0.00 0.00 0.00 3.36
296 297 8.747471 TCGGTAAAGGTAAAAAGAAAAAGGAAA 58.253 29.630 0.00 0.00 0.00 3.13
297 298 9.537192 CGGTAAAGGTAAAAAGAAAAAGGAAAT 57.463 29.630 0.00 0.00 0.00 2.17
314 315 9.908152 AAAAGGAAATACAAAAGAAATAGTCGG 57.092 29.630 0.00 0.00 0.00 4.79
315 316 8.857694 AAGGAAATACAAAAGAAATAGTCGGA 57.142 30.769 0.00 0.00 0.00 4.55
316 317 8.857694 AGGAAATACAAAAGAAATAGTCGGAA 57.142 30.769 0.00 0.00 0.00 4.30
317 318 8.947115 AGGAAATACAAAAGAAATAGTCGGAAG 58.053 33.333 0.00 0.00 0.00 3.46
318 319 8.943002 GGAAATACAAAAGAAATAGTCGGAAGA 58.057 33.333 0.00 0.00 38.16 2.87
329 330 9.720769 AGAAATAGTCGGAAGAAATAAACAAGA 57.279 29.630 0.00 0.00 45.01 3.02
349 350 1.699730 AAAAACCGGTTCTGGGAAGG 58.300 50.000 22.53 0.00 0.00 3.46
350 351 0.554305 AAAACCGGTTCTGGGAAGGT 59.446 50.000 22.53 0.00 36.66 3.50
351 352 0.554305 AAACCGGTTCTGGGAAGGTT 59.446 50.000 22.53 0.00 45.99 3.50
352 353 0.109913 AACCGGTTCTGGGAAGGTTC 59.890 55.000 15.86 0.00 40.81 3.62
353 354 0.767060 ACCGGTTCTGGGAAGGTTCT 60.767 55.000 0.00 0.00 0.00 3.01
354 355 1.272807 CCGGTTCTGGGAAGGTTCTA 58.727 55.000 0.00 0.00 0.00 2.10
355 356 1.207329 CCGGTTCTGGGAAGGTTCTAG 59.793 57.143 0.00 0.00 0.00 2.43
356 357 2.176889 CGGTTCTGGGAAGGTTCTAGA 58.823 52.381 0.00 0.00 0.00 2.43
357 358 2.565834 CGGTTCTGGGAAGGTTCTAGAA 59.434 50.000 0.00 0.00 32.33 2.10
358 359 3.616802 CGGTTCTGGGAAGGTTCTAGAAC 60.617 52.174 24.73 24.73 42.97 3.01
371 372 4.466827 GTTCTAGAACCTTCCCAAAACCA 58.533 43.478 22.74 0.00 35.36 3.67
372 373 4.367039 TCTAGAACCTTCCCAAAACCAG 57.633 45.455 0.00 0.00 0.00 4.00
373 374 3.977999 TCTAGAACCTTCCCAAAACCAGA 59.022 43.478 0.00 0.00 0.00 3.86
374 375 3.229697 AGAACCTTCCCAAAACCAGAG 57.770 47.619 0.00 0.00 0.00 3.35
375 376 2.158460 AGAACCTTCCCAAAACCAGAGG 60.158 50.000 0.00 0.00 0.00 3.69
376 377 0.482887 ACCTTCCCAAAACCAGAGGG 59.517 55.000 0.00 0.00 44.22 4.30
377 378 0.251787 CCTTCCCAAAACCAGAGGGG 60.252 60.000 0.00 0.00 43.03 4.79
379 380 2.474924 TCCCAAAACCAGAGGGGAG 58.525 57.895 0.00 0.00 44.54 4.30
380 381 1.140134 TCCCAAAACCAGAGGGGAGG 61.140 60.000 0.00 0.00 44.54 4.30
381 382 1.140134 CCCAAAACCAGAGGGGAGGA 61.140 60.000 0.00 0.00 43.57 3.71
382 383 0.777446 CCAAAACCAGAGGGGAGGAA 59.223 55.000 0.00 0.00 41.15 3.36
383 384 1.359130 CCAAAACCAGAGGGGAGGAAT 59.641 52.381 0.00 0.00 41.15 3.01
384 385 2.621668 CCAAAACCAGAGGGGAGGAATC 60.622 54.545 0.00 0.00 41.15 2.52
385 386 1.299939 AAACCAGAGGGGAGGAATCC 58.700 55.000 0.00 0.00 41.15 3.01
410 411 2.650778 GGTCGGCCCAAAAAGCTG 59.349 61.111 0.00 0.00 38.00 4.24
411 412 2.049156 GTCGGCCCAAAAAGCTGC 60.049 61.111 0.00 0.00 36.52 5.25
412 413 3.669344 TCGGCCCAAAAAGCTGCG 61.669 61.111 0.00 0.00 36.52 5.18
413 414 4.722855 CGGCCCAAAAAGCTGCGG 62.723 66.667 0.00 0.00 0.00 5.69
414 415 3.302344 GGCCCAAAAAGCTGCGGA 61.302 61.111 0.00 0.00 0.00 5.54
415 416 2.049156 GCCCAAAAAGCTGCGGAC 60.049 61.111 0.00 0.00 0.00 4.79
416 417 2.255252 CCCAAAAAGCTGCGGACG 59.745 61.111 0.00 0.00 0.00 4.79
417 418 2.429069 CCAAAAAGCTGCGGACGC 60.429 61.111 10.13 10.13 42.35 5.19
418 419 2.639286 CAAAAAGCTGCGGACGCT 59.361 55.556 18.04 0.00 42.51 5.07
419 420 1.441016 CAAAAAGCTGCGGACGCTC 60.441 57.895 18.04 9.50 42.51 5.03
420 421 1.891919 AAAAAGCTGCGGACGCTCA 60.892 52.632 18.04 0.00 42.51 4.26
421 422 1.845809 AAAAAGCTGCGGACGCTCAG 61.846 55.000 18.04 8.83 42.51 3.35
422 423 2.996168 AAAAGCTGCGGACGCTCAGT 62.996 55.000 18.04 0.00 42.51 3.41
423 424 4.731612 AGCTGCGGACGCTCAGTG 62.732 66.667 18.04 4.44 42.51 3.66
428 429 3.066190 CGGACGCTCAGTGGGGTA 61.066 66.667 0.00 0.00 32.56 3.69
429 430 2.577593 GGACGCTCAGTGGGGTAC 59.422 66.667 0.00 0.00 32.56 3.34
430 431 2.181021 GACGCTCAGTGGGGTACG 59.819 66.667 0.00 0.00 32.56 3.67
431 432 3.984200 GACGCTCAGTGGGGTACGC 62.984 68.421 0.29 0.29 43.69 4.42
455 456 3.408389 CGACCTCTGCGCCATATAG 57.592 57.895 4.18 0.00 0.00 1.31
456 457 0.109086 CGACCTCTGCGCCATATAGG 60.109 60.000 4.18 7.00 41.84 2.57
457 458 1.257743 GACCTCTGCGCCATATAGGA 58.742 55.000 4.18 0.00 41.22 2.94
458 459 1.618837 GACCTCTGCGCCATATAGGAA 59.381 52.381 4.18 0.00 41.22 3.36
459 460 2.234908 GACCTCTGCGCCATATAGGAAT 59.765 50.000 4.18 0.00 41.22 3.01
460 461 2.234908 ACCTCTGCGCCATATAGGAATC 59.765 50.000 4.18 0.00 41.22 2.52
461 462 2.534298 CTCTGCGCCATATAGGAATCG 58.466 52.381 4.18 0.00 41.22 3.34
462 463 1.002366 CTGCGCCATATAGGAATCGC 58.998 55.000 4.18 10.21 43.81 4.58
463 464 0.391130 TGCGCCATATAGGAATCGCC 60.391 55.000 4.18 0.00 43.17 5.54
464 465 1.090052 GCGCCATATAGGAATCGCCC 61.090 60.000 0.00 0.00 39.54 6.13
465 466 0.806102 CGCCATATAGGAATCGCCCG 60.806 60.000 0.00 0.00 41.22 6.13
466 467 0.462047 GCCATATAGGAATCGCCCGG 60.462 60.000 0.00 0.00 41.22 5.73
467 468 0.178068 CCATATAGGAATCGCCCGGG 59.822 60.000 19.09 19.09 41.22 5.73
468 469 0.462047 CATATAGGAATCGCCCGGGC 60.462 60.000 36.69 36.69 37.37 6.13
469 470 1.623542 ATATAGGAATCGCCCGGGCC 61.624 60.000 39.24 24.84 37.37 5.80
491 492 1.298859 GAGTGGGCGCTGACGATTTT 61.299 55.000 7.64 0.00 43.93 1.82
494 495 0.248012 TGGGCGCTGACGATTTTCTA 59.752 50.000 7.64 0.00 43.93 2.10
497 498 2.160813 GGGCGCTGACGATTTTCTAAAA 59.839 45.455 7.64 0.00 43.93 1.52
499 500 3.602489 GGCGCTGACGATTTTCTAAAAAC 59.398 43.478 7.64 0.00 43.93 2.43
503 504 6.129194 GCGCTGACGATTTTCTAAAAACAAAT 60.129 34.615 0.00 0.00 43.93 2.32
505 506 7.096640 CGCTGACGATTTTCTAAAAACAAATGT 60.097 33.333 0.00 0.00 43.93 2.71
507 508 8.346476 TGACGATTTTCTAAAAACAAATGTGG 57.654 30.769 0.00 0.00 0.00 4.17
593 598 2.439519 ATAAAAGGCGCCCCACCG 60.440 61.111 26.15 0.00 0.00 4.94
630 635 2.302260 CAGCGGACCTCTCTCTTATCA 58.698 52.381 0.00 0.00 0.00 2.15
637 642 4.020543 GACCTCTCTCTTATCACACCACT 58.979 47.826 0.00 0.00 0.00 4.00
638 643 4.020543 ACCTCTCTCTTATCACACCACTC 58.979 47.826 0.00 0.00 0.00 3.51
639 644 4.019858 CCTCTCTCTTATCACACCACTCA 58.980 47.826 0.00 0.00 0.00 3.41
640 645 4.464244 CCTCTCTCTTATCACACCACTCAA 59.536 45.833 0.00 0.00 0.00 3.02
641 646 5.128499 CCTCTCTCTTATCACACCACTCAAT 59.872 44.000 0.00 0.00 0.00 2.57
642 647 6.214191 TCTCTCTTATCACACCACTCAATC 57.786 41.667 0.00 0.00 0.00 2.67
971 977 0.114364 AATTTCCGGGGGTTGCTCTT 59.886 50.000 0.00 0.00 0.00 2.85
1221 1377 4.918129 GCGCCGTTCGATCCGCTA 62.918 66.667 0.00 0.00 42.83 4.26
1376 2117 2.027285 TCACTGGATCTGGATTTCGCAA 60.027 45.455 0.00 0.00 0.00 4.85
1382 2123 5.170021 TGGATCTGGATTTCGCAAAAATTG 58.830 37.500 0.00 0.00 0.00 2.32
1424 2280 4.786425 AGAGCAAACCCTCCAATATTCTC 58.214 43.478 0.00 0.00 32.17 2.87
1463 2816 1.790090 TTGAGCGAATTTGTGCGGCA 61.790 50.000 0.00 0.00 35.87 5.69
1629 3165 4.648762 TCTTCTGTGAAATTTGGCCTTTGA 59.351 37.500 3.32 0.00 0.00 2.69
1633 3169 6.355747 TCTGTGAAATTTGGCCTTTGAAAAT 58.644 32.000 3.32 0.00 0.00 1.82
1682 4110 1.533711 GTCAGTGGCAGGGGCATAT 59.466 57.895 0.00 0.00 43.71 1.78
1735 4187 5.957771 TGGAACTGAATTAGTAGATGGCT 57.042 39.130 0.00 0.00 39.18 4.75
1754 4206 3.933332 GGCTCTAGCAGTTTTATGTCGTT 59.067 43.478 4.07 0.00 44.36 3.85
1755 4207 5.107133 GGCTCTAGCAGTTTTATGTCGTTA 58.893 41.667 4.07 0.00 44.36 3.18
1756 4208 5.753921 GGCTCTAGCAGTTTTATGTCGTTAT 59.246 40.000 4.07 0.00 44.36 1.89
1757 4209 6.074249 GGCTCTAGCAGTTTTATGTCGTTATC 60.074 42.308 4.07 0.00 44.36 1.75
1758 4210 6.475727 GCTCTAGCAGTTTTATGTCGTTATCA 59.524 38.462 0.00 0.00 41.59 2.15
1759 4211 7.010183 GCTCTAGCAGTTTTATGTCGTTATCAA 59.990 37.037 0.00 0.00 41.59 2.57
1760 4212 8.181487 TCTAGCAGTTTTATGTCGTTATCAAC 57.819 34.615 0.00 0.00 0.00 3.18
1761 4213 8.033038 TCTAGCAGTTTTATGTCGTTATCAACT 58.967 33.333 0.00 0.00 0.00 3.16
1818 4274 1.669999 GGTGGTTGATGGATGGCTGC 61.670 60.000 0.00 0.00 0.00 5.25
1821 4277 0.394762 GGTTGATGGATGGCTGCAGA 60.395 55.000 20.43 0.00 0.00 4.26
1908 4816 5.525378 TGCCATTTGCTGTAACGAAAAATTT 59.475 32.000 0.00 0.00 42.00 1.82
1968 5002 1.996191 GCTCGAGTGACCACTGAATTC 59.004 52.381 15.13 0.00 42.66 2.17
1990 5024 2.101582 AGCTGATAGACGAACCCATGAC 59.898 50.000 0.00 0.00 0.00 3.06
2007 5042 5.395657 CCCATGACTTGCTACTGAGATTGTA 60.396 44.000 0.00 0.00 0.00 2.41
2110 5390 1.804372 GCACTGGAGATGACGATGTCC 60.804 57.143 0.00 0.00 41.59 4.02
2184 5464 2.741092 GACTGGAAGGACGCCACA 59.259 61.111 0.00 0.00 39.30 4.17
2265 5545 3.717294 AGGTTCAAGGCCGGCGAT 61.717 61.111 22.54 8.99 0.00 4.58
2740 6371 1.775869 CCGATGTGTCCGATCATCAG 58.224 55.000 13.29 8.22 39.99 2.90
2747 6378 3.448660 TGTGTCCGATCATCAGACAAGAT 59.551 43.478 5.22 0.00 41.87 2.40
2766 6492 6.385176 ACAAGATCATAGATGGGTCTTTCTCA 59.615 38.462 0.00 0.00 35.87 3.27
2794 6520 4.701765 AGAACAGCACATGAGTCCATATC 58.298 43.478 0.00 0.00 0.00 1.63
2796 6522 4.069300 ACAGCACATGAGTCCATATCTG 57.931 45.455 0.00 0.00 33.10 2.90
2799 6525 3.136077 AGCACATGAGTCCATATCTGCTT 59.864 43.478 0.00 0.00 35.44 3.91
2800 6526 4.346127 AGCACATGAGTCCATATCTGCTTA 59.654 41.667 0.00 0.00 35.44 3.09
2802 6528 6.212187 AGCACATGAGTCCATATCTGCTTATA 59.788 38.462 0.00 0.00 35.44 0.98
2804 6530 6.534436 CACATGAGTCCATATCTGCTTATAGC 59.466 42.308 0.00 0.00 42.82 2.97
3358 7229 3.517100 ACTGACTGCCAGACATAACTCAT 59.483 43.478 0.00 0.00 45.78 2.90
3387 7258 0.741221 CGGTCTACTTTGGCCTCTGC 60.741 60.000 3.32 0.00 0.00 4.26
3389 7260 1.831736 GGTCTACTTTGGCCTCTGCTA 59.168 52.381 3.32 0.00 37.74 3.49
3390 7261 2.436173 GGTCTACTTTGGCCTCTGCTAT 59.564 50.000 3.32 0.00 37.74 2.97
3394 7265 2.716217 ACTTTGGCCTCTGCTATTGTC 58.284 47.619 3.32 0.00 37.74 3.18
3441 7324 7.750229 AATTCTTGTCAGTGATGTATTGTGT 57.250 32.000 0.00 0.00 0.00 3.72
3443 7326 7.652300 TTCTTGTCAGTGATGTATTGTGTAC 57.348 36.000 0.00 0.00 0.00 2.90
3519 7403 3.749226 GGGATAATGGAGCTTCTTCCTG 58.251 50.000 0.00 0.00 38.12 3.86
3543 7427 3.589735 TGTTTCCTATTGTCTAAGGGCCA 59.410 43.478 6.18 0.00 33.40 5.36
3553 7437 4.079253 TGTCTAAGGGCCACTTTGATTTC 58.921 43.478 16.56 8.46 41.67 2.17
3554 7438 3.444034 GTCTAAGGGCCACTTTGATTTCC 59.556 47.826 16.56 5.33 41.67 3.13
3555 7439 2.702270 AAGGGCCACTTTGATTTCCT 57.298 45.000 6.18 0.00 35.35 3.36
3556 7440 3.825908 AAGGGCCACTTTGATTTCCTA 57.174 42.857 6.18 0.00 35.35 2.94
3557 7441 3.087370 AGGGCCACTTTGATTTCCTAC 57.913 47.619 6.18 0.00 0.00 3.18
3558 7442 2.649816 AGGGCCACTTTGATTTCCTACT 59.350 45.455 6.18 0.00 0.00 2.57
3561 7445 3.826729 GGCCACTTTGATTTCCTACTGTT 59.173 43.478 0.00 0.00 0.00 3.16
3639 7816 4.744570 TGTGCACAATTAAACGTCCAAAA 58.255 34.783 19.28 0.00 0.00 2.44
3648 7825 8.760569 ACAATTAAACGTCCAAAAATTCATGTC 58.239 29.630 0.00 0.00 0.00 3.06
3757 7942 0.038892 GCCATTTGTGTGCACTGAGG 60.039 55.000 19.41 11.92 0.00 3.86
3758 7943 1.608055 CCATTTGTGTGCACTGAGGA 58.392 50.000 19.41 0.61 0.00 3.71
3759 7944 1.955778 CCATTTGTGTGCACTGAGGAA 59.044 47.619 19.41 6.31 0.00 3.36
3760 7945 2.030540 CCATTTGTGTGCACTGAGGAAG 60.031 50.000 19.41 2.73 0.00 3.46
3761 7946 1.024271 TTTGTGTGCACTGAGGAAGC 58.976 50.000 19.41 0.00 0.00 3.86
3762 7947 0.181114 TTGTGTGCACTGAGGAAGCT 59.819 50.000 19.41 0.00 0.00 3.74
3763 7948 1.047801 TGTGTGCACTGAGGAAGCTA 58.952 50.000 19.41 0.00 0.00 3.32
3764 7949 1.625315 TGTGTGCACTGAGGAAGCTAT 59.375 47.619 19.41 0.00 0.00 2.97
3765 7950 2.038952 TGTGTGCACTGAGGAAGCTATT 59.961 45.455 19.41 0.00 0.00 1.73
3766 7951 3.077359 GTGTGCACTGAGGAAGCTATTT 58.923 45.455 19.41 0.00 0.00 1.40
3767 7952 3.076621 TGTGCACTGAGGAAGCTATTTG 58.923 45.455 19.41 0.00 0.00 2.32
3768 7953 3.077359 GTGCACTGAGGAAGCTATTTGT 58.923 45.455 10.32 0.00 0.00 2.83
3769 7954 4.253685 GTGCACTGAGGAAGCTATTTGTA 58.746 43.478 10.32 0.00 0.00 2.41
3770 7955 4.093556 GTGCACTGAGGAAGCTATTTGTAC 59.906 45.833 10.32 0.00 0.00 2.90
3775 7960 5.105146 ACTGAGGAAGCTATTTGTACCTCTG 60.105 44.000 0.36 0.36 42.73 3.35
3849 8034 6.592220 GGACATTTTGTTTTGTTAACACAGGT 59.408 34.615 8.07 1.35 33.22 4.00
3884 8069 9.942850 AGAATTAACAAAATATTTGAAGTGGGG 57.057 29.630 9.62 0.00 0.00 4.96
3910 8095 7.417456 GGGATTATGTTTTAACACCCCAGAATC 60.417 40.741 14.23 0.00 42.51 2.52
3966 8151 9.750125 GTTTTTGAAACAGAATCTCAATAACCT 57.250 29.630 0.00 0.00 36.15 3.50
3999 8184 6.985188 TCAAAAGAATATTAACTGCGCTCT 57.015 33.333 9.73 0.00 0.00 4.09
4061 8248 7.141363 CAGAACAGGGTAAACAGAAAATGAAG 58.859 38.462 0.00 0.00 0.00 3.02
4062 8249 5.453567 ACAGGGTAAACAGAAAATGAAGC 57.546 39.130 0.00 0.00 0.00 3.86
4063 8250 4.280929 ACAGGGTAAACAGAAAATGAAGCC 59.719 41.667 0.00 0.00 0.00 4.35
4080 8347 0.110486 GCCTGGAGAGGGTTTGTGAA 59.890 55.000 0.00 0.00 40.19 3.18
4093 8360 7.671398 AGAGGGTTTGTGAAAGTGAATATTGAT 59.329 33.333 0.00 0.00 0.00 2.57
4103 8370 1.260297 TGAATATTGATGCCGCGTTCG 59.740 47.619 4.92 0.00 0.00 3.95
4114 8381 2.074942 CGCGTTCGGTTTAGATGCA 58.925 52.632 0.00 0.00 0.00 3.96
4123 8390 3.197766 TCGGTTTAGATGCAGAATCTGGT 59.802 43.478 12.66 0.00 45.64 4.00
4127 8394 5.118990 GTTTAGATGCAGAATCTGGTGCTA 58.881 41.667 12.66 0.00 45.64 3.49
4145 8413 1.476085 CTACAGGAGCTGTGACCAGAG 59.524 57.143 0.00 0.00 45.01 3.35
4154 8422 3.141398 GCTGTGACCAGAGATGACAAAA 58.859 45.455 0.00 0.00 41.50 2.44
4163 8435 6.533730 ACCAGAGATGACAAAAGTATGTTCA 58.466 36.000 0.00 0.00 32.57 3.18
4170 8442 5.771469 TGACAAAAGTATGTTCATTGCAGG 58.229 37.500 0.00 0.00 32.57 4.85
4189 8461 3.687321 GAGCTCCTGCGGGATTGCA 62.687 63.158 23.67 0.00 45.42 4.08
4200 8472 2.045708 GGATTGCACATGTGGCGGA 61.046 57.895 26.55 11.92 0.00 5.54
4204 8476 3.136123 GCACATGTGGCGGATGCT 61.136 61.111 26.55 0.00 42.25 3.79
4205 8477 3.104766 CACATGTGGCGGATGCTC 58.895 61.111 18.51 0.00 42.25 4.26
4206 8478 2.124570 ACATGTGGCGGATGCTCC 60.125 61.111 0.00 0.00 42.25 4.70
4207 8479 2.124612 CATGTGGCGGATGCTCCA 60.125 61.111 0.00 0.00 42.25 3.86
4208 8480 1.527611 CATGTGGCGGATGCTCCAT 60.528 57.895 0.00 0.00 42.25 3.41
4209 8481 1.228063 ATGTGGCGGATGCTCCATC 60.228 57.895 0.00 0.00 42.25 3.51
4210 8482 1.703014 ATGTGGCGGATGCTCCATCT 61.703 55.000 0.00 0.00 40.39 2.90
4211 8483 1.153086 GTGGCGGATGCTCCATCTT 60.153 57.895 0.00 0.00 40.39 2.40
4212 8484 1.146930 TGGCGGATGCTCCATCTTC 59.853 57.895 0.00 0.00 40.39 2.87
4213 8485 1.340399 TGGCGGATGCTCCATCTTCT 61.340 55.000 0.00 0.00 40.39 2.85
4214 8486 0.179034 GGCGGATGCTCCATCTTCTT 60.179 55.000 5.32 0.00 40.39 2.52
4215 8487 1.673168 GCGGATGCTCCATCTTCTTT 58.327 50.000 5.32 0.00 40.39 2.52
4216 8488 2.019984 GCGGATGCTCCATCTTCTTTT 58.980 47.619 5.32 0.00 40.39 2.27
4217 8489 2.032675 GCGGATGCTCCATCTTCTTTTC 59.967 50.000 5.32 0.00 40.39 2.29
4218 8490 3.539604 CGGATGCTCCATCTTCTTTTCT 58.460 45.455 5.32 0.00 40.39 2.52
4219 8491 3.944015 CGGATGCTCCATCTTCTTTTCTT 59.056 43.478 5.32 0.00 40.39 2.52
4220 8492 4.397417 CGGATGCTCCATCTTCTTTTCTTT 59.603 41.667 5.32 0.00 40.39 2.52
4221 8493 5.105997 CGGATGCTCCATCTTCTTTTCTTTT 60.106 40.000 5.32 0.00 40.39 2.27
4222 8494 6.571150 CGGATGCTCCATCTTCTTTTCTTTTT 60.571 38.462 5.32 0.00 40.39 1.94
4223 8495 6.810676 GGATGCTCCATCTTCTTTTCTTTTTC 59.189 38.462 5.32 0.00 40.39 2.29
4224 8496 6.089249 TGCTCCATCTTCTTTTCTTTTTCC 57.911 37.500 0.00 0.00 0.00 3.13
4225 8497 5.835280 TGCTCCATCTTCTTTTCTTTTTCCT 59.165 36.000 0.00 0.00 0.00 3.36
4226 8498 6.324770 TGCTCCATCTTCTTTTCTTTTTCCTT 59.675 34.615 0.00 0.00 0.00 3.36
4227 8499 7.147672 TGCTCCATCTTCTTTTCTTTTTCCTTT 60.148 33.333 0.00 0.00 0.00 3.11
4228 8500 7.383572 GCTCCATCTTCTTTTCTTTTTCCTTTC 59.616 37.037 0.00 0.00 0.00 2.62
4229 8501 8.539117 TCCATCTTCTTTTCTTTTTCCTTTCT 57.461 30.769 0.00 0.00 0.00 2.52
4230 8502 8.981659 TCCATCTTCTTTTCTTTTTCCTTTCTT 58.018 29.630 0.00 0.00 0.00 2.52
4231 8503 9.605275 CCATCTTCTTTTCTTTTTCCTTTCTTT 57.395 29.630 0.00 0.00 0.00 2.52
4234 8506 9.353999 TCTTCTTTTCTTTTTCCTTTCTTTTCG 57.646 29.630 0.00 0.00 0.00 3.46
4235 8507 7.520119 TCTTTTCTTTTTCCTTTCTTTTCGC 57.480 32.000 0.00 0.00 0.00 4.70
4236 8508 5.942325 TTTCTTTTTCCTTTCTTTTCGCG 57.058 34.783 0.00 0.00 0.00 5.87
4237 8509 3.959943 TCTTTTTCCTTTCTTTTCGCGG 58.040 40.909 6.13 0.00 0.00 6.46
4238 8510 2.785713 TTTTCCTTTCTTTTCGCGGG 57.214 45.000 6.13 0.00 0.00 6.13
4239 8511 0.312729 TTTCCTTTCTTTTCGCGGGC 59.687 50.000 6.13 0.00 0.00 6.13
4240 8512 1.847890 TTCCTTTCTTTTCGCGGGCG 61.848 55.000 6.13 6.74 41.35 6.13
4241 8513 2.175811 CTTTCTTTTCGCGGGCGG 59.824 61.111 13.60 0.00 40.25 6.13
4242 8514 2.280933 TTTCTTTTCGCGGGCGGA 60.281 55.556 13.60 0.36 40.25 5.54
4243 8515 1.644786 CTTTCTTTTCGCGGGCGGAT 61.645 55.000 13.60 0.00 40.25 4.18
4244 8516 1.917782 TTTCTTTTCGCGGGCGGATG 61.918 55.000 13.60 1.04 40.25 3.51
4245 8517 4.536687 CTTTTCGCGGGCGGATGC 62.537 66.667 13.60 0.00 40.25 3.91
4253 8525 4.996434 GGGCGGATGCTCCATCGG 62.996 72.222 0.00 8.01 41.35 4.18
4256 8528 2.664185 CGGATGCTCCATCGGCAG 60.664 66.667 3.57 0.00 41.35 4.85
4257 8529 2.824546 GGATGCTCCATCGGCAGA 59.175 61.111 0.00 0.00 41.35 4.26
4258 8530 1.146930 GGATGCTCCATCGGCAGAA 59.853 57.895 0.00 0.00 41.35 3.02
4259 8531 0.883814 GGATGCTCCATCGGCAGAAG 60.884 60.000 0.00 0.00 41.35 2.85
4260 8532 1.505477 GATGCTCCATCGGCAGAAGC 61.505 60.000 2.48 2.48 43.15 3.86
4261 8533 1.980784 ATGCTCCATCGGCAGAAGCT 61.981 55.000 9.84 0.00 43.15 3.74
4262 8534 1.886777 GCTCCATCGGCAGAAGCTC 60.887 63.158 2.25 0.00 41.70 4.09
4263 8535 1.591059 CTCCATCGGCAGAAGCTCG 60.591 63.158 0.00 0.00 41.70 5.03
4264 8536 2.009424 CTCCATCGGCAGAAGCTCGA 62.009 60.000 0.00 0.00 43.76 4.04
4265 8537 1.591059 CCATCGGCAGAAGCTCGAG 60.591 63.158 8.45 8.45 43.21 4.04
4295 8567 4.966787 TGCAGGCCAAACCGGGTC 62.967 66.667 6.32 0.00 46.52 4.46
4296 8568 4.966787 GCAGGCCAAACCGGGTCA 62.967 66.667 6.32 0.00 46.52 4.02
4297 8569 2.983592 CAGGCCAAACCGGGTCAC 60.984 66.667 6.32 0.00 46.52 3.67
4298 8570 3.494254 AGGCCAAACCGGGTCACA 61.494 61.111 6.32 0.00 46.52 3.58
4299 8571 2.519780 GGCCAAACCGGGTCACAA 60.520 61.111 6.32 0.00 34.06 3.33
4300 8572 2.725641 GCCAAACCGGGTCACAAC 59.274 61.111 6.32 0.00 34.06 3.32
4301 8573 3.027292 CCAAACCGGGTCACAACG 58.973 61.111 6.32 0.00 0.00 4.10
4302 8574 1.820481 CCAAACCGGGTCACAACGT 60.820 57.895 6.32 0.00 0.00 3.99
4303 8575 1.644913 CAAACCGGGTCACAACGTC 59.355 57.895 6.32 0.00 0.00 4.34
4304 8576 1.524393 AAACCGGGTCACAACGTCC 60.524 57.895 6.32 0.00 0.00 4.79
4305 8577 2.254737 AAACCGGGTCACAACGTCCA 62.255 55.000 6.32 0.00 0.00 4.02
4306 8578 2.047213 AACCGGGTCACAACGTCCAT 62.047 55.000 6.32 0.00 0.00 3.41
4307 8579 2.032634 CCGGGTCACAACGTCCATG 61.033 63.158 0.00 0.00 0.00 3.66
4308 8580 2.677003 CGGGTCACAACGTCCATGC 61.677 63.158 0.00 0.00 0.00 4.06
4309 8581 1.599518 GGGTCACAACGTCCATGCA 60.600 57.895 0.00 0.00 0.00 3.96
4310 8582 1.577328 GGGTCACAACGTCCATGCAG 61.577 60.000 0.00 0.00 0.00 4.41
4311 8583 0.884704 GGTCACAACGTCCATGCAGT 60.885 55.000 0.00 0.00 0.00 4.40
4312 8584 0.512952 GTCACAACGTCCATGCAGTC 59.487 55.000 0.00 0.00 0.00 3.51
4313 8585 0.943835 TCACAACGTCCATGCAGTCG 60.944 55.000 0.00 0.00 0.00 4.18
4314 8586 2.317609 ACAACGTCCATGCAGTCGC 61.318 57.895 0.00 0.00 39.24 5.19
4315 8587 2.029288 CAACGTCCATGCAGTCGCT 61.029 57.895 0.00 0.00 39.64 4.93
4316 8588 2.029288 AACGTCCATGCAGTCGCTG 61.029 57.895 0.00 2.92 39.64 5.18
4317 8589 2.433145 CGTCCATGCAGTCGCTGT 60.433 61.111 8.32 0.00 39.64 4.40
4318 8590 2.029288 CGTCCATGCAGTCGCTGTT 61.029 57.895 8.32 0.00 39.64 3.16
4319 8591 1.790387 GTCCATGCAGTCGCTGTTC 59.210 57.895 8.32 0.00 39.64 3.18
4320 8592 0.950555 GTCCATGCAGTCGCTGTTCA 60.951 55.000 8.32 0.70 39.64 3.18
4321 8593 0.036105 TCCATGCAGTCGCTGTTCAT 60.036 50.000 8.32 2.67 39.64 2.57
4322 8594 0.806868 CCATGCAGTCGCTGTTCATT 59.193 50.000 8.32 0.00 39.64 2.57
4323 8595 1.466866 CCATGCAGTCGCTGTTCATTG 60.467 52.381 8.32 0.00 39.64 2.82
4324 8596 0.169672 ATGCAGTCGCTGTTCATTGC 59.830 50.000 8.32 0.00 39.64 3.56
4325 8597 1.154150 GCAGTCGCTGTTCATTGCC 60.154 57.895 8.32 0.00 33.43 4.52
4326 8598 1.503542 CAGTCGCTGTTCATTGCCC 59.496 57.895 0.00 0.00 0.00 5.36
4327 8599 0.957395 CAGTCGCTGTTCATTGCCCT 60.957 55.000 0.00 0.00 0.00 5.19
4328 8600 0.613260 AGTCGCTGTTCATTGCCCTA 59.387 50.000 0.00 0.00 0.00 3.53
4329 8601 1.003118 AGTCGCTGTTCATTGCCCTAA 59.997 47.619 0.00 0.00 0.00 2.69
4330 8602 1.398390 GTCGCTGTTCATTGCCCTAAG 59.602 52.381 0.00 0.00 0.00 2.18
4331 8603 1.277842 TCGCTGTTCATTGCCCTAAGA 59.722 47.619 0.00 0.00 0.00 2.10
4332 8604 1.667724 CGCTGTTCATTGCCCTAAGAG 59.332 52.381 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.442047 TGAACATTGTTTTGAAAAAGGTAACAT 57.558 25.926 3.08 0.00 41.41 2.71
66 67 8.833231 TGAACATTGTTTTGAAAAAGGTAACA 57.167 26.923 3.08 0.00 41.41 2.41
67 68 8.387354 CCTGAACATTGTTTTGAAAAAGGTAAC 58.613 33.333 3.08 0.00 0.00 2.50
68 69 8.314751 TCCTGAACATTGTTTTGAAAAAGGTAA 58.685 29.630 3.08 0.00 0.00 2.85
69 70 7.841956 TCCTGAACATTGTTTTGAAAAAGGTA 58.158 30.769 3.08 0.00 0.00 3.08
70 71 6.706295 TCCTGAACATTGTTTTGAAAAAGGT 58.294 32.000 3.08 0.00 0.00 3.50
71 72 7.608308 TTCCTGAACATTGTTTTGAAAAAGG 57.392 32.000 3.08 3.60 0.00 3.11
73 74 9.837525 CAAATTCCTGAACATTGTTTTGAAAAA 57.162 25.926 3.08 0.00 0.00 1.94
74 75 9.007901 ACAAATTCCTGAACATTGTTTTGAAAA 57.992 25.926 12.43 0.00 32.93 2.29
75 76 8.558973 ACAAATTCCTGAACATTGTTTTGAAA 57.441 26.923 12.43 3.88 32.93 2.69
76 77 9.658799 TTACAAATTCCTGAACATTGTTTTGAA 57.341 25.926 14.37 11.17 36.10 2.69
77 78 9.658799 TTTACAAATTCCTGAACATTGTTTTGA 57.341 25.926 14.37 4.43 36.10 2.69
102 103 6.442513 TTTTTCAAATTGCCGACCATTTTT 57.557 29.167 0.00 0.00 0.00 1.94
103 104 6.631971 ATTTTTCAAATTGCCGACCATTTT 57.368 29.167 0.00 0.00 0.00 1.82
104 105 7.920160 ATATTTTTCAAATTGCCGACCATTT 57.080 28.000 0.00 0.00 0.00 2.32
105 106 7.390162 ACAATATTTTTCAAATTGCCGACCATT 59.610 29.630 0.00 0.00 34.63 3.16
106 107 6.878389 ACAATATTTTTCAAATTGCCGACCAT 59.122 30.769 0.00 0.00 34.63 3.55
107 108 6.226787 ACAATATTTTTCAAATTGCCGACCA 58.773 32.000 0.00 0.00 34.63 4.02
108 109 6.720012 ACAATATTTTTCAAATTGCCGACC 57.280 33.333 0.00 0.00 34.63 4.79
144 145 9.921637 TCAACAAATTTTCTTAAGTTGTGAACT 57.078 25.926 13.40 0.00 45.46 3.01
145 146 9.952341 GTCAACAAATTTTCTTAAGTTGTGAAC 57.048 29.630 13.40 6.99 37.97 3.18
146 147 9.698309 TGTCAACAAATTTTCTTAAGTTGTGAA 57.302 25.926 13.40 0.04 37.97 3.18
147 148 9.698309 TTGTCAACAAATTTTCTTAAGTTGTGA 57.302 25.926 13.40 6.57 37.97 3.58
161 162 8.505625 GCCATGTATCAATTTTGTCAACAAATT 58.494 29.630 8.98 3.57 44.30 1.82
162 163 7.119553 GGCCATGTATCAATTTTGTCAACAAAT 59.880 33.333 8.98 0.00 44.30 2.32
163 164 6.426328 GGCCATGTATCAATTTTGTCAACAAA 59.574 34.615 0.00 4.24 43.36 2.83
164 165 5.931146 GGCCATGTATCAATTTTGTCAACAA 59.069 36.000 0.00 0.00 0.00 2.83
165 166 5.477510 GGCCATGTATCAATTTTGTCAACA 58.522 37.500 0.00 0.00 0.00 3.33
166 167 4.562394 CGGCCATGTATCAATTTTGTCAAC 59.438 41.667 2.24 0.00 0.00 3.18
167 168 4.460731 TCGGCCATGTATCAATTTTGTCAA 59.539 37.500 2.24 0.00 0.00 3.18
168 169 4.013050 TCGGCCATGTATCAATTTTGTCA 58.987 39.130 2.24 0.00 0.00 3.58
169 170 4.630894 TCGGCCATGTATCAATTTTGTC 57.369 40.909 2.24 0.00 0.00 3.18
170 171 4.462483 AGTTCGGCCATGTATCAATTTTGT 59.538 37.500 2.24 0.00 0.00 2.83
171 172 4.997565 AGTTCGGCCATGTATCAATTTTG 58.002 39.130 2.24 0.00 0.00 2.44
172 173 5.418840 AGAAGTTCGGCCATGTATCAATTTT 59.581 36.000 2.24 0.00 0.00 1.82
173 174 4.949856 AGAAGTTCGGCCATGTATCAATTT 59.050 37.500 2.24 0.00 0.00 1.82
174 175 4.526970 AGAAGTTCGGCCATGTATCAATT 58.473 39.130 2.24 0.00 0.00 2.32
175 176 4.156455 AGAAGTTCGGCCATGTATCAAT 57.844 40.909 2.24 0.00 0.00 2.57
176 177 3.627395 AGAAGTTCGGCCATGTATCAA 57.373 42.857 2.24 0.00 0.00 2.57
177 178 3.627395 AAGAAGTTCGGCCATGTATCA 57.373 42.857 2.24 0.00 0.00 2.15
178 179 4.965119 AAAAGAAGTTCGGCCATGTATC 57.035 40.909 2.24 0.00 0.00 2.24
179 180 4.881850 CCTAAAAGAAGTTCGGCCATGTAT 59.118 41.667 2.24 0.00 0.00 2.29
180 181 4.020039 TCCTAAAAGAAGTTCGGCCATGTA 60.020 41.667 2.24 0.00 0.00 2.29
181 182 3.081804 CCTAAAAGAAGTTCGGCCATGT 58.918 45.455 2.24 0.00 0.00 3.21
182 183 3.343617 TCCTAAAAGAAGTTCGGCCATG 58.656 45.455 2.24 0.00 0.00 3.66
183 184 3.713826 TCCTAAAAGAAGTTCGGCCAT 57.286 42.857 2.24 0.00 0.00 4.40
184 185 3.495434 TTCCTAAAAGAAGTTCGGCCA 57.505 42.857 2.24 0.00 0.00 5.36
185 186 3.190744 CCTTTCCTAAAAGAAGTTCGGCC 59.809 47.826 0.00 0.00 43.90 6.13
186 187 3.819337 ACCTTTCCTAAAAGAAGTTCGGC 59.181 43.478 0.00 0.00 43.90 5.54
187 188 5.061179 TCACCTTTCCTAAAAGAAGTTCGG 58.939 41.667 0.00 0.00 43.90 4.30
188 189 6.613755 TTCACCTTTCCTAAAAGAAGTTCG 57.386 37.500 0.00 0.00 43.90 3.95
192 193 9.914131 CCTTATTTTCACCTTTCCTAAAAGAAG 57.086 33.333 0.00 0.00 43.90 2.85
193 194 8.866093 CCCTTATTTTCACCTTTCCTAAAAGAA 58.134 33.333 0.00 0.00 43.90 2.52
194 195 7.453439 CCCCTTATTTTCACCTTTCCTAAAAGA 59.547 37.037 0.00 0.00 43.90 2.52
195 196 7.453439 TCCCCTTATTTTCACCTTTCCTAAAAG 59.547 37.037 0.00 0.00 41.36 2.27
196 197 7.306781 TCCCCTTATTTTCACCTTTCCTAAAA 58.693 34.615 0.00 0.00 0.00 1.52
197 198 6.865520 TCCCCTTATTTTCACCTTTCCTAAA 58.134 36.000 0.00 0.00 0.00 1.85
198 199 6.471942 TCCCCTTATTTTCACCTTTCCTAA 57.528 37.500 0.00 0.00 0.00 2.69
199 200 6.471942 TTCCCCTTATTTTCACCTTTCCTA 57.528 37.500 0.00 0.00 0.00 2.94
200 201 5.348259 TTCCCCTTATTTTCACCTTTCCT 57.652 39.130 0.00 0.00 0.00 3.36
201 202 6.428083 TTTTCCCCTTATTTTCACCTTTCC 57.572 37.500 0.00 0.00 0.00 3.13
268 269 8.916062 TCCTTTTTCTTTTTACCTTTACCGATT 58.084 29.630 0.00 0.00 0.00 3.34
269 270 8.467963 TCCTTTTTCTTTTTACCTTTACCGAT 57.532 30.769 0.00 0.00 0.00 4.18
270 271 7.878547 TCCTTTTTCTTTTTACCTTTACCGA 57.121 32.000 0.00 0.00 0.00 4.69
271 272 8.929827 TTTCCTTTTTCTTTTTACCTTTACCG 57.070 30.769 0.00 0.00 0.00 4.02
288 289 9.908152 CCGACTATTTCTTTTGTATTTCCTTTT 57.092 29.630 0.00 0.00 0.00 2.27
289 290 9.292195 TCCGACTATTTCTTTTGTATTTCCTTT 57.708 29.630 0.00 0.00 0.00 3.11
290 291 8.857694 TCCGACTATTTCTTTTGTATTTCCTT 57.142 30.769 0.00 0.00 0.00 3.36
291 292 8.857694 TTCCGACTATTTCTTTTGTATTTCCT 57.142 30.769 0.00 0.00 0.00 3.36
292 293 8.943002 TCTTCCGACTATTTCTTTTGTATTTCC 58.057 33.333 0.00 0.00 0.00 3.13
303 304 9.720769 TCTTGTTTATTTCTTCCGACTATTTCT 57.279 29.630 0.00 0.00 0.00 2.52
330 331 1.063492 ACCTTCCCAGAACCGGTTTTT 60.063 47.619 23.22 10.49 0.00 1.94
331 332 0.554305 ACCTTCCCAGAACCGGTTTT 59.446 50.000 23.22 13.91 0.00 2.43
332 333 0.554305 AACCTTCCCAGAACCGGTTT 59.446 50.000 23.22 8.75 34.49 3.27
333 334 0.109913 GAACCTTCCCAGAACCGGTT 59.890 55.000 22.50 22.50 40.43 4.44
334 335 0.767060 AGAACCTTCCCAGAACCGGT 60.767 55.000 0.00 0.00 0.00 5.28
335 336 1.207329 CTAGAACCTTCCCAGAACCGG 59.793 57.143 0.00 0.00 0.00 5.28
336 337 2.176889 TCTAGAACCTTCCCAGAACCG 58.823 52.381 0.00 0.00 0.00 4.44
337 338 3.940319 GTTCTAGAACCTTCCCAGAACC 58.060 50.000 22.74 0.00 40.40 3.62
349 350 4.466827 TGGTTTTGGGAAGGTTCTAGAAC 58.533 43.478 24.73 24.73 40.45 3.01
350 351 4.414182 TCTGGTTTTGGGAAGGTTCTAGAA 59.586 41.667 0.00 0.00 0.00 2.10
351 352 3.977999 TCTGGTTTTGGGAAGGTTCTAGA 59.022 43.478 0.00 0.00 0.00 2.43
352 353 4.327680 CTCTGGTTTTGGGAAGGTTCTAG 58.672 47.826 0.00 0.00 0.00 2.43
353 354 3.073946 CCTCTGGTTTTGGGAAGGTTCTA 59.926 47.826 0.00 0.00 0.00 2.10
354 355 2.158460 CCTCTGGTTTTGGGAAGGTTCT 60.158 50.000 0.00 0.00 0.00 3.01
355 356 2.239400 CCTCTGGTTTTGGGAAGGTTC 58.761 52.381 0.00 0.00 0.00 3.62
356 357 1.133167 CCCTCTGGTTTTGGGAAGGTT 60.133 52.381 0.00 0.00 43.47 3.50
357 358 0.482887 CCCTCTGGTTTTGGGAAGGT 59.517 55.000 0.00 0.00 43.47 3.50
358 359 0.251787 CCCCTCTGGTTTTGGGAAGG 60.252 60.000 0.00 0.00 43.47 3.46
359 360 0.777446 TCCCCTCTGGTTTTGGGAAG 59.223 55.000 0.00 0.00 44.03 3.46
360 361 0.777446 CTCCCCTCTGGTTTTGGGAA 59.223 55.000 0.00 0.00 46.18 3.97
361 362 1.140134 CCTCCCCTCTGGTTTTGGGA 61.140 60.000 0.00 0.00 44.79 4.37
362 363 1.140134 TCCTCCCCTCTGGTTTTGGG 61.140 60.000 0.00 0.00 40.59 4.12
363 364 0.777446 TTCCTCCCCTCTGGTTTTGG 59.223 55.000 0.00 0.00 34.77 3.28
364 365 2.621668 GGATTCCTCCCCTCTGGTTTTG 60.622 54.545 0.00 0.00 35.28 2.44
365 366 1.641192 GGATTCCTCCCCTCTGGTTTT 59.359 52.381 0.00 0.00 35.28 2.43
366 367 1.299939 GGATTCCTCCCCTCTGGTTT 58.700 55.000 0.00 0.00 35.28 3.27
367 368 3.029083 GGATTCCTCCCCTCTGGTT 57.971 57.895 0.00 0.00 35.28 3.67
368 369 4.840545 GGATTCCTCCCCTCTGGT 57.159 61.111 0.00 0.00 35.28 4.00
393 394 2.650778 CAGCTTTTTGGGCCGACC 59.349 61.111 0.00 0.00 40.81 4.79
394 395 2.049156 GCAGCTTTTTGGGCCGAC 60.049 61.111 0.00 0.00 0.00 4.79
395 396 3.669344 CGCAGCTTTTTGGGCCGA 61.669 61.111 0.00 0.00 0.00 5.54
396 397 4.722855 CCGCAGCTTTTTGGGCCG 62.723 66.667 0.00 0.00 0.00 6.13
397 398 3.302344 TCCGCAGCTTTTTGGGCC 61.302 61.111 0.00 0.00 0.00 5.80
398 399 2.049156 GTCCGCAGCTTTTTGGGC 60.049 61.111 0.00 0.00 0.00 5.36
399 400 2.255252 CGTCCGCAGCTTTTTGGG 59.745 61.111 0.00 0.00 0.00 4.12
400 401 2.429069 GCGTCCGCAGCTTTTTGG 60.429 61.111 6.82 0.00 41.49 3.28
401 402 1.441016 GAGCGTCCGCAGCTTTTTG 60.441 57.895 14.70 0.00 46.13 2.44
402 403 1.845809 CTGAGCGTCCGCAGCTTTTT 61.846 55.000 14.70 0.00 46.13 1.94
403 404 2.280797 TGAGCGTCCGCAGCTTTT 60.281 55.556 14.70 0.00 46.13 2.27
404 405 2.740055 CTGAGCGTCCGCAGCTTT 60.740 61.111 14.70 0.00 46.13 3.51
405 406 3.996124 ACTGAGCGTCCGCAGCTT 61.996 61.111 14.70 0.00 46.13 3.74
411 412 3.066190 TACCCCACTGAGCGTCCG 61.066 66.667 0.00 0.00 0.00 4.79
412 413 2.577593 GTACCCCACTGAGCGTCC 59.422 66.667 0.00 0.00 0.00 4.79
413 414 2.181021 CGTACCCCACTGAGCGTC 59.819 66.667 0.00 0.00 0.00 5.19
414 415 4.065281 GCGTACCCCACTGAGCGT 62.065 66.667 0.00 0.00 0.00 5.07
437 438 0.109086 CCTATATGGCGCAGAGGTCG 60.109 60.000 10.83 0.00 0.00 4.79
438 439 1.257743 TCCTATATGGCGCAGAGGTC 58.742 55.000 10.83 0.00 35.26 3.85
439 440 1.717032 TTCCTATATGGCGCAGAGGT 58.283 50.000 10.83 0.00 35.26 3.85
440 441 2.736719 CGATTCCTATATGGCGCAGAGG 60.737 54.545 10.83 4.93 35.26 3.69
441 442 2.534298 CGATTCCTATATGGCGCAGAG 58.466 52.381 10.83 0.00 35.26 3.35
442 443 1.404181 GCGATTCCTATATGGCGCAGA 60.404 52.381 10.83 0.00 42.00 4.26
443 444 1.002366 GCGATTCCTATATGGCGCAG 58.998 55.000 10.83 0.00 42.00 5.18
444 445 0.391130 GGCGATTCCTATATGGCGCA 60.391 55.000 10.83 0.00 43.44 6.09
445 446 1.090052 GGGCGATTCCTATATGGCGC 61.090 60.000 0.00 0.00 41.79 6.53
446 447 0.806102 CGGGCGATTCCTATATGGCG 60.806 60.000 0.00 0.00 35.26 5.69
447 448 0.462047 CCGGGCGATTCCTATATGGC 60.462 60.000 0.00 0.00 35.26 4.40
448 449 0.178068 CCCGGGCGATTCCTATATGG 59.822 60.000 8.08 0.00 34.39 2.74
449 450 0.462047 GCCCGGGCGATTCCTATATG 60.462 60.000 33.60 0.00 34.39 1.78
450 451 1.623542 GGCCCGGGCGATTCCTATAT 61.624 60.000 38.22 0.00 43.06 0.86
451 452 2.288025 GGCCCGGGCGATTCCTATA 61.288 63.158 38.22 0.00 43.06 1.31
452 453 3.637273 GGCCCGGGCGATTCCTAT 61.637 66.667 38.22 0.00 43.06 2.57
468 469 4.803426 GTCAGCGCCCACTCTCGG 62.803 72.222 2.29 0.00 0.00 4.63
470 471 2.564553 AATCGTCAGCGCCCACTCTC 62.565 60.000 2.29 0.00 38.14 3.20
471 472 2.172483 AAATCGTCAGCGCCCACTCT 62.172 55.000 2.29 0.00 38.14 3.24
480 481 7.998212 CACATTTGTTTTTAGAAAATCGTCAGC 59.002 33.333 0.00 0.00 0.00 4.26
491 492 4.576873 TCAGCGTCCACATTTGTTTTTAGA 59.423 37.500 0.00 0.00 0.00 2.10
494 495 3.443976 GTCAGCGTCCACATTTGTTTTT 58.556 40.909 0.00 0.00 0.00 1.94
497 498 0.586319 CGTCAGCGTCCACATTTGTT 59.414 50.000 0.00 0.00 0.00 2.83
547 552 1.941812 CAAGTCTCGGTGTGCCAAC 59.058 57.895 0.00 0.00 34.09 3.77
556 561 4.394712 AAGGCCCGCAAGTCTCGG 62.395 66.667 0.00 0.00 46.05 4.63
593 598 1.294659 CTGGCAAGGACGACAAGAGC 61.295 60.000 0.00 0.00 0.00 4.09
937 942 7.054751 CCCCGGAAATTTCTAGTAGAAGATTT 58.945 38.462 17.42 20.81 35.37 2.17
938 943 6.409349 CCCCCGGAAATTTCTAGTAGAAGATT 60.409 42.308 17.42 11.22 35.37 2.40
939 944 5.071923 CCCCCGGAAATTTCTAGTAGAAGAT 59.928 44.000 17.42 7.10 35.37 2.40
940 945 4.407945 CCCCCGGAAATTTCTAGTAGAAGA 59.592 45.833 17.42 5.25 35.37 2.87
941 946 4.163649 ACCCCCGGAAATTTCTAGTAGAAG 59.836 45.833 17.42 0.85 35.37 2.85
942 947 4.106324 ACCCCCGGAAATTTCTAGTAGAA 58.894 43.478 17.42 8.59 31.28 2.10
943 948 3.727948 ACCCCCGGAAATTTCTAGTAGA 58.272 45.455 17.42 0.00 0.00 2.59
946 951 2.882643 GCAACCCCCGGAAATTTCTAGT 60.883 50.000 17.42 5.87 0.00 2.57
971 977 4.838152 GCTCGGCCGGCAATCTCA 62.838 66.667 30.85 1.15 0.00 3.27
1132 1227 1.788621 CGTCTCGCGCGAACATACAG 61.789 60.000 33.99 19.78 0.00 2.74
1133 1228 1.866059 CGTCTCGCGCGAACATACA 60.866 57.895 33.99 9.68 0.00 2.29
1221 1377 2.985847 GAAACCAAGCCAGCGCCT 60.986 61.111 2.29 0.00 34.57 5.52
1234 1390 0.176449 GAGCATGGCATTGGGGAAAC 59.824 55.000 0.00 0.00 0.00 2.78
1358 2099 4.439305 TTTTTGCGAAATCCAGATCCAG 57.561 40.909 0.00 0.00 0.00 3.86
1376 2117 2.159572 CGAAATCTCGCCGGTCAATTTT 60.160 45.455 1.90 0.00 38.45 1.82
1424 2280 1.143813 ATCATAGGGAGGCCACCTTG 58.856 55.000 22.33 18.45 39.54 3.61
1463 2816 1.131638 TGCAAGAAGGACCACTGTCT 58.868 50.000 0.00 0.00 41.47 3.41
1561 2916 4.263771 ACCCACCATTACAAAACTAGGGAG 60.264 45.833 0.00 0.00 37.23 4.30
1629 3165 3.523157 CCCTTAATTTCAGGCCCCATTTT 59.477 43.478 0.00 0.00 0.00 1.82
1633 3169 0.338120 CCCCTTAATTTCAGGCCCCA 59.662 55.000 0.00 0.00 0.00 4.96
1682 4110 1.270785 ACTGTTCCATCATGTGCACGA 60.271 47.619 13.13 4.46 0.00 4.35
1735 4187 8.033038 AGTTGATAACGACATAAAACTGCTAGA 58.967 33.333 0.00 0.00 36.23 2.43
1754 4206 3.250744 GCGCGGCTATGATAAGTTGATA 58.749 45.455 8.83 0.00 0.00 2.15
1755 4207 2.069273 GCGCGGCTATGATAAGTTGAT 58.931 47.619 8.83 0.00 0.00 2.57
1756 4208 1.497991 GCGCGGCTATGATAAGTTGA 58.502 50.000 8.83 0.00 0.00 3.18
1757 4209 0.512952 GGCGCGGCTATGATAAGTTG 59.487 55.000 27.05 0.00 0.00 3.16
1758 4210 0.105964 TGGCGCGGCTATGATAAGTT 59.894 50.000 33.23 0.00 0.00 2.66
1759 4211 0.319900 CTGGCGCGGCTATGATAAGT 60.320 55.000 33.23 0.00 0.00 2.24
1760 4212 0.319900 ACTGGCGCGGCTATGATAAG 60.320 55.000 33.23 21.73 0.00 1.73
1761 4213 0.599991 CACTGGCGCGGCTATGATAA 60.600 55.000 33.23 10.46 0.00 1.75
1908 4816 0.601576 AGTCATGCGTGCAAACGGTA 60.602 50.000 0.00 0.00 0.00 4.02
1968 5002 2.101415 TCATGGGTTCGTCTATCAGCTG 59.899 50.000 7.63 7.63 0.00 4.24
1971 5005 4.115516 CAAGTCATGGGTTCGTCTATCAG 58.884 47.826 0.00 0.00 0.00 2.90
2111 5391 4.649674 TCCCGCAGTACAGAATCTTTATCT 59.350 41.667 0.00 0.00 0.00 1.98
2265 5545 4.953868 CACCCAACGCCGACACGA 62.954 66.667 0.00 0.00 36.70 4.35
2277 5557 1.302431 CGAGTTCACCATGCACCCA 60.302 57.895 0.00 0.00 0.00 4.51
2740 6371 6.825610 AGAAAGACCCATCTATGATCTTGTC 58.174 40.000 9.05 8.87 33.57 3.18
2747 6378 4.406972 CACCTGAGAAAGACCCATCTATGA 59.593 45.833 0.00 0.00 33.57 2.15
2766 6492 1.002888 CTCATGTGCTGTTCTCCACCT 59.997 52.381 0.00 0.00 0.00 4.00
2796 6522 5.006746 ACACGAATTAAGCAGTGCTATAAGC 59.993 40.000 20.09 13.01 38.25 3.09
2799 6525 5.220586 GCAACACGAATTAAGCAGTGCTATA 60.221 40.000 20.09 9.90 38.25 1.31
2800 6526 4.437390 GCAACACGAATTAAGCAGTGCTAT 60.437 41.667 20.09 6.28 38.25 2.97
2802 6528 2.350772 GCAACACGAATTAAGCAGTGCT 60.351 45.455 13.14 13.14 42.56 4.40
3326 7180 1.337167 TGGCAGTCAGTCGATCACTTG 60.337 52.381 0.00 0.00 30.26 3.16
3327 7181 0.969149 TGGCAGTCAGTCGATCACTT 59.031 50.000 0.00 0.00 30.26 3.16
3333 7187 1.834188 TATGTCTGGCAGTCAGTCGA 58.166 50.000 18.67 3.11 43.76 4.20
3358 7229 3.325870 CAAAGTAGACCGTGAGCATTGA 58.674 45.455 0.00 0.00 0.00 2.57
3441 7324 5.277297 CGCAGTTTTCTCATGAACAACAGTA 60.277 40.000 11.81 0.00 31.72 2.74
3443 7326 3.970610 CGCAGTTTTCTCATGAACAACAG 59.029 43.478 11.81 6.69 31.72 3.16
3519 7403 3.628032 GCCCTTAGACAATAGGAAACAGC 59.372 47.826 0.00 0.00 33.13 4.40
3543 7427 5.077564 GGGGAAACAGTAGGAAATCAAAGT 58.922 41.667 0.00 0.00 0.00 2.66
3561 7445 3.837731 GTGGATGAAAATTTCCAGGGGAA 59.162 43.478 3.00 0.00 42.55 3.97
3639 7816 6.629128 TGCCATTTCAAATACGACATGAATT 58.371 32.000 0.00 0.00 33.45 2.17
3648 7825 8.578308 AATAACATGATGCCATTTCAAATACG 57.422 30.769 0.00 0.00 0.00 3.06
3739 7924 1.608055 TCCTCAGTGCACACAAATGG 58.392 50.000 21.04 11.69 0.00 3.16
3757 7942 3.206964 GGCCAGAGGTACAAATAGCTTC 58.793 50.000 0.00 0.00 39.28 3.86
3758 7943 2.576191 TGGCCAGAGGTACAAATAGCTT 59.424 45.455 0.00 0.00 39.28 3.74
3759 7944 2.092914 GTGGCCAGAGGTACAAATAGCT 60.093 50.000 5.11 0.00 41.93 3.32
3760 7945 2.289565 GTGGCCAGAGGTACAAATAGC 58.710 52.381 5.11 0.00 0.00 2.97
3761 7946 3.627395 TGTGGCCAGAGGTACAAATAG 57.373 47.619 5.11 0.00 0.00 1.73
3762 7947 4.584638 ATTGTGGCCAGAGGTACAAATA 57.415 40.909 5.11 0.00 36.27 1.40
3763 7948 2.969821 TTGTGGCCAGAGGTACAAAT 57.030 45.000 5.11 0.00 32.33 2.32
3764 7949 2.969821 ATTGTGGCCAGAGGTACAAA 57.030 45.000 5.11 0.00 36.27 2.83
3765 7950 4.584638 ATTATTGTGGCCAGAGGTACAA 57.415 40.909 5.11 6.10 36.76 2.41
3766 7951 4.584638 AATTATTGTGGCCAGAGGTACA 57.415 40.909 5.11 0.00 0.00 2.90
3767 7952 5.681639 AGTAATTATTGTGGCCAGAGGTAC 58.318 41.667 5.11 4.12 0.00 3.34
3768 7953 5.163237 GGAGTAATTATTGTGGCCAGAGGTA 60.163 44.000 5.11 0.00 0.00 3.08
3769 7954 4.385310 GGAGTAATTATTGTGGCCAGAGGT 60.385 45.833 5.11 0.00 0.00 3.85
3770 7955 4.137543 GGAGTAATTATTGTGGCCAGAGG 58.862 47.826 5.11 0.00 0.00 3.69
3775 7960 4.469657 TGGATGGAGTAATTATTGTGGCC 58.530 43.478 0.00 0.00 0.00 5.36
3884 8069 5.265989 TCTGGGGTGTTAAAACATAATCCC 58.734 41.667 9.65 9.65 41.59 3.85
3886 8071 8.062065 TGATTCTGGGGTGTTAAAACATAATC 57.938 34.615 0.00 0.00 41.59 1.75
3910 8095 3.651562 ACTTGTGTCGTTTCTTCGTTG 57.348 42.857 0.00 0.00 0.00 4.10
3999 8184 6.279882 CAGCTGTGGTAGAAATTTCCAAAAA 58.720 36.000 14.61 0.00 32.82 1.94
4038 8225 5.920840 GCTTCATTTTCTGTTTACCCTGTTC 59.079 40.000 0.00 0.00 0.00 3.18
4061 8248 0.110486 TTCACAAACCCTCTCCAGGC 59.890 55.000 0.00 0.00 38.72 4.85
4062 8249 2.158608 ACTTTCACAAACCCTCTCCAGG 60.159 50.000 0.00 0.00 39.98 4.45
4063 8250 2.880890 CACTTTCACAAACCCTCTCCAG 59.119 50.000 0.00 0.00 0.00 3.86
4080 8347 2.288666 ACGCGGCATCAATATTCACTT 58.711 42.857 12.47 0.00 0.00 3.16
4103 8370 3.065925 GCACCAGATTCTGCATCTAAACC 59.934 47.826 8.23 0.00 40.67 3.27
4110 8377 2.421107 CCTGTAGCACCAGATTCTGCAT 60.421 50.000 8.23 0.00 35.73 3.96
4127 8394 0.178950 TCTCTGGTCACAGCTCCTGT 60.179 55.000 0.00 0.00 46.51 4.00
4145 8413 6.529125 CCTGCAATGAACATACTTTTGTCATC 59.471 38.462 0.00 0.00 0.00 2.92
4154 8422 2.240667 AGCTCCCTGCAATGAACATACT 59.759 45.455 0.00 0.00 45.94 2.12
4181 8453 2.491152 CGCCACATGTGCAATCCC 59.509 61.111 20.81 3.04 0.00 3.85
4200 8472 6.496218 AGGAAAAAGAAAAGAAGATGGAGCAT 59.504 34.615 0.00 0.00 0.00 3.79
4204 8476 8.539117 AGAAAGGAAAAAGAAAAGAAGATGGA 57.461 30.769 0.00 0.00 0.00 3.41
4205 8477 9.605275 AAAGAAAGGAAAAAGAAAAGAAGATGG 57.395 29.630 0.00 0.00 0.00 3.51
4208 8480 9.353999 CGAAAAGAAAGGAAAAAGAAAAGAAGA 57.646 29.630 0.00 0.00 0.00 2.87
4209 8481 8.110612 GCGAAAAGAAAGGAAAAAGAAAAGAAG 58.889 33.333 0.00 0.00 0.00 2.85
4210 8482 7.201401 CGCGAAAAGAAAGGAAAAAGAAAAGAA 60.201 33.333 0.00 0.00 0.00 2.52
4211 8483 6.252655 CGCGAAAAGAAAGGAAAAAGAAAAGA 59.747 34.615 0.00 0.00 0.00 2.52
4212 8484 6.402816 CGCGAAAAGAAAGGAAAAAGAAAAG 58.597 36.000 0.00 0.00 0.00 2.27
4213 8485 5.289917 CCGCGAAAAGAAAGGAAAAAGAAAA 59.710 36.000 8.23 0.00 0.00 2.29
4214 8486 4.801516 CCGCGAAAAGAAAGGAAAAAGAAA 59.198 37.500 8.23 0.00 0.00 2.52
4215 8487 4.356289 CCGCGAAAAGAAAGGAAAAAGAA 58.644 39.130 8.23 0.00 0.00 2.52
4216 8488 3.243267 CCCGCGAAAAGAAAGGAAAAAGA 60.243 43.478 8.23 0.00 0.00 2.52
4217 8489 3.049912 CCCGCGAAAAGAAAGGAAAAAG 58.950 45.455 8.23 0.00 0.00 2.27
4218 8490 2.800273 GCCCGCGAAAAGAAAGGAAAAA 60.800 45.455 8.23 0.00 0.00 1.94
4219 8491 1.269361 GCCCGCGAAAAGAAAGGAAAA 60.269 47.619 8.23 0.00 0.00 2.29
4220 8492 0.312729 GCCCGCGAAAAGAAAGGAAA 59.687 50.000 8.23 0.00 0.00 3.13
4221 8493 1.847890 CGCCCGCGAAAAGAAAGGAA 61.848 55.000 8.23 0.00 42.83 3.36
4222 8494 2.322081 CGCCCGCGAAAAGAAAGGA 61.322 57.895 8.23 0.00 42.83 3.36
4223 8495 2.175811 CGCCCGCGAAAAGAAAGG 59.824 61.111 8.23 0.00 42.83 3.11
4224 8496 1.644786 ATCCGCCCGCGAAAAGAAAG 61.645 55.000 8.23 0.00 42.83 2.62
4225 8497 1.673009 ATCCGCCCGCGAAAAGAAA 60.673 52.632 8.23 0.00 42.83 2.52
4226 8498 2.046700 ATCCGCCCGCGAAAAGAA 60.047 55.556 8.23 0.00 42.83 2.52
4227 8499 2.817834 CATCCGCCCGCGAAAAGA 60.818 61.111 8.23 0.00 42.83 2.52
4228 8500 4.536687 GCATCCGCCCGCGAAAAG 62.537 66.667 8.23 0.00 42.83 2.27
4241 8513 1.505477 GCTTCTGCCGATGGAGCATC 61.505 60.000 0.00 0.00 40.04 3.91
4242 8514 1.525535 GCTTCTGCCGATGGAGCAT 60.526 57.895 0.00 0.00 40.04 3.79
4243 8515 2.124983 GCTTCTGCCGATGGAGCA 60.125 61.111 0.00 0.00 38.82 4.26
4244 8516 1.886777 GAGCTTCTGCCGATGGAGC 60.887 63.158 0.00 0.00 40.80 4.70
4245 8517 1.591059 CGAGCTTCTGCCGATGGAG 60.591 63.158 0.00 0.00 40.80 3.86
4246 8518 2.009424 CTCGAGCTTCTGCCGATGGA 62.009 60.000 0.00 0.00 39.64 3.41
4247 8519 1.591059 CTCGAGCTTCTGCCGATGG 60.591 63.158 0.00 0.00 39.64 3.51
4248 8520 2.236382 GCTCGAGCTTCTGCCGATG 61.236 63.158 29.88 0.00 39.64 3.84
4249 8521 2.105930 GCTCGAGCTTCTGCCGAT 59.894 61.111 29.88 0.00 39.64 4.18
4259 8531 1.062294 CAAGAATCAAGCAGCTCGAGC 59.938 52.381 30.01 30.01 42.49 5.03
4260 8532 1.062294 GCAAGAATCAAGCAGCTCGAG 59.938 52.381 8.45 8.45 0.00 4.04
4261 8533 1.081892 GCAAGAATCAAGCAGCTCGA 58.918 50.000 0.00 0.00 0.00 4.04
4262 8534 0.800631 TGCAAGAATCAAGCAGCTCG 59.199 50.000 0.00 0.00 33.75 5.03
4295 8567 1.492873 CGACTGCATGGACGTTGTG 59.507 57.895 0.00 0.00 0.00 3.33
4296 8568 2.317609 GCGACTGCATGGACGTTGT 61.318 57.895 0.00 0.00 42.15 3.32
4297 8569 2.029288 AGCGACTGCATGGACGTTG 61.029 57.895 0.00 0.00 46.23 4.10
4298 8570 2.029288 CAGCGACTGCATGGACGTT 61.029 57.895 0.00 0.00 46.23 3.99
4299 8571 2.433145 CAGCGACTGCATGGACGT 60.433 61.111 0.00 0.00 46.23 4.34
4300 8572 1.959899 GAACAGCGACTGCATGGACG 61.960 60.000 6.74 0.00 46.23 4.79
4301 8573 0.950555 TGAACAGCGACTGCATGGAC 60.951 55.000 6.74 0.00 46.23 4.02
4302 8574 0.036105 ATGAACAGCGACTGCATGGA 60.036 50.000 6.74 0.00 46.23 3.41
4303 8575 0.806868 AATGAACAGCGACTGCATGG 59.193 50.000 6.74 0.00 46.23 3.66
4304 8576 1.891178 CAATGAACAGCGACTGCATG 58.109 50.000 6.74 0.00 46.23 4.06
4305 8577 0.169672 GCAATGAACAGCGACTGCAT 59.830 50.000 6.74 1.77 46.23 3.96
4306 8578 1.575922 GCAATGAACAGCGACTGCA 59.424 52.632 6.74 0.00 46.23 4.41
4307 8579 1.154150 GGCAATGAACAGCGACTGC 60.154 57.895 6.74 0.00 43.24 4.40
4308 8580 0.957395 AGGGCAATGAACAGCGACTG 60.957 55.000 5.47 5.47 37.52 3.51
4309 8581 0.613260 TAGGGCAATGAACAGCGACT 59.387 50.000 0.00 0.00 0.00 4.18
4310 8582 1.398390 CTTAGGGCAATGAACAGCGAC 59.602 52.381 0.00 0.00 0.00 5.19
4311 8583 1.277842 TCTTAGGGCAATGAACAGCGA 59.722 47.619 0.00 0.00 0.00 4.93
4312 8584 1.667724 CTCTTAGGGCAATGAACAGCG 59.332 52.381 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.