AutoCloner

Multiple sequence alignment - TraesCS7B01G281700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G281700	chr7B	100.000	2995	0	0	692	3686	516316236	516313242	0.000000e+00	5531.0
1	TraesCS7B01G281700	chr7B	82.033	2282	296	67	1021	3252	516355614	516353397	0.000000e+00	1838.0
2	TraesCS7B01G281700	chr7B	100.000	544	0	0	1	544	516316927	516316384	0.000000e+00	968.0
3	TraesCS7B01G281700	chr7B	96.203	553	12	1	1	544	567880931	567881483	0.000000e+00	915.0
4	TraesCS7B01G281700	chr7B	96.022	553	12	2	1	544	68187157	68187708	0.000000e+00	909.0
5	TraesCS7B01G281700	chr7B	86.626	329	42	2	1035	1362	516299141	516298814	2.710000e-96	363.0
6	TraesCS7B01G281700	chr7B	97.452	157	3	1	692	848	566748581	566748736	2.180000e-67	267.0
7	TraesCS7B01G281700	chr7B	97.419	155	2	1	692	846	68187707	68187859	2.820000e-66	263.0
8	TraesCS7B01G281700	chr7B	97.183	142	3	1	692	832	567881482	567881623	4.760000e-59	239.0
9	TraesCS7B01G281700	chr7B	94.545	55	3	0	3553	3607	586689100	586689046	6.560000e-13	86.1
10	TraesCS7B01G281700	chr7D	95.980	2637	72	11	840	3475	486576578	486573975	0.000000e+00	4252.0
11	TraesCS7B01G281700	chr7D	82.216	2283	285	70	1021	3252	486630506	486628294	0.000000e+00	1855.0
12	TraesCS7B01G281700	chr7D	88.889	540	39	12	1	522	636607418	636606882	0.000000e+00	664.0
13	TraesCS7B01G281700	chr7D	74.468	752	144	26	1078	1801	486242820	486242089	7.790000e-72	281.0
14	TraesCS7B01G281700	chr7D	98.507	134	2	0	3553	3686	486573975	486573842	1.710000e-58	237.0
15	TraesCS7B01G281700	chr7A	95.011	2646	88	18	833	3475	555481328	555478724	0.000000e+00	4115.0
16	TraesCS7B01G281700	chr7A	89.425	1513	137	16	1971	3471	555474841	555473340	0.000000e+00	1886.0
17	TraesCS7B01G281700	chr7A	89.093	1522	134	17	1970	3473	555467554	555466047	0.000000e+00	1862.0
18	TraesCS7B01G281700	chr7A	81.218	2135	286	64	1021	3092	555506497	555504415	0.000000e+00	1615.0
19	TraesCS7B01G281700	chr7A	90.215	930	76	6	936	1865	555468529	555467615	0.000000e+00	1199.0
20	TraesCS7B01G281700	chr7A	88.029	827	88	9	1035	1855	555475730	555474909	0.000000e+00	968.0
21	TraesCS7B01G281700	chr7A	96.212	132	5	0	3553	3684	555478724	555478593	2.230000e-52	217.0
22	TraesCS7B01G281700	chr7A	94.697	132	7	0	3555	3686	555466023	555465892	4.830000e-49	206.0
23	TraesCS7B01G281700	chr7A	94.697	132	7	0	3555	3686	555473314	555473183	4.830000e-49	206.0
24	TraesCS7B01G281700	chr7A	89.937	159	8	4	695	849	81146933	81146779	8.070000e-47	198.0
25	TraesCS7B01G281700	chr6A	96.564	553	10	1	1	544	356200911	356200359	0.000000e+00	926.0
26	TraesCS7B01G281700	chr6A	95.479	553	16	1	1	544	310195301	310194749	0.000000e+00	893.0
27	TraesCS7B01G281700	chr6A	96.711	152	2	1	695	846	310194747	310194599	2.200000e-62	250.0
28	TraesCS7B01G281700	chr6A	96.667	120	2	2	1	119	356201104	356200986	8.070000e-47	198.0
29	TraesCS7B01G281700	chr6A	84.000	125	20	0	2072	2196	610510278	610510402	1.800000e-23	121.0
30	TraesCS7B01G281700	chr4A	96.383	553	11	1	1	544	4630321	4630873	0.000000e+00	920.0
31	TraesCS7B01G281700	chr4A	97.887	142	2	1	705	846	4631081	4631221	1.020000e-60	244.0
32	TraesCS7B01G281700	chr3A	96.383	553	11	1	1	544	257252289	257251737	0.000000e+00	920.0
33	TraesCS7B01G281700	chr3A	95.117	512	15	1	1	502	84016875	84017386	0.000000e+00	817.0
34	TraesCS7B01G281700	chr3A	97.419	155	4	0	692	846	84017408	84017562	7.850000e-67	265.0
35	TraesCS7B01G281700	chr2A	100.000	415	0	0	130	544	598627605	598628019	0.000000e+00	767.0
36	TraesCS7B01G281700	chr2A	94.872	156	3	2	692	845	598628176	598628328	4.760000e-59	239.0
37	TraesCS7B01G281700	chr2A	100.000	119	0	0	1	119	598627072	598627190	1.720000e-53	220.0
38	TraesCS7B01G281700	chr3B	80.952	546	68	23	1	522	754307119	754307652	5.690000e-113	418.0
39	TraesCS7B01G281700	chr5B	83.051	354	49	9	1613	1959	148377133	148376784	9.940000e-81	311.0
40	TraesCS7B01G281700	chr4B	91.667	156	12	1	692	847	569761647	569761801	8.020000e-52	215.0
41	TraesCS7B01G281700	chr4B	94.545	55	3	0	3553	3607	663469783	663469837	6.560000e-13	86.1
42	TraesCS7B01G281700	chrUn	96.667	120	2	2	1	119	329535076	329534958	8.070000e-47	198.0
43	TraesCS7B01G281700	chr6B	82.946	129	22	0	2068	2196	707255271	707255143	2.330000e-22	117.0
44	TraesCS7B01G281700	chr5A	94.545	55	3	0	3553	3607	633676876	633676930	6.560000e-13	86.1
45	TraesCS7B01G281700	chr1B	92.727	55	4	0	3553	3607	90936818	90936764	3.050000e-11	80.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G281700	chr7B	516313242	516316927	3685	True	3249.500000	5531	100.000000	1	3686	2	chr7B.!!$R4	3685
1	TraesCS7B01G281700	chr7B	516353397	516355614	2217	True	1838.000000	1838	82.033000	1021	3252	1	chr7B.!!$R2	2231
2	TraesCS7B01G281700	chr7B	68187157	68187859	702	False	586.000000	909	96.720500	1	846	2	chr7B.!!$F2	845
3	TraesCS7B01G281700	chr7B	567880931	567881623	692	False	577.000000	915	96.693000	1	832	2	chr7B.!!$F3	831
4	TraesCS7B01G281700	chr7D	486573842	486576578	2736	True	2244.500000	4252	97.243500	840	3686	2	chr7D.!!$R4	2846
5	TraesCS7B01G281700	chr7D	486628294	486630506	2212	True	1855.000000	1855	82.216000	1021	3252	1	chr7D.!!$R2	2231
6	TraesCS7B01G281700	chr7D	636606882	636607418	536	True	664.000000	664	88.889000	1	522	1	chr7D.!!$R3	521
7	TraesCS7B01G281700	chr7D	486242089	486242820	731	True	281.000000	281	74.468000	1078	1801	1	chr7D.!!$R1	723
8	TraesCS7B01G281700	chr7A	555504415	555506497	2082	True	1615.000000	1615	81.218000	1021	3092	1	chr7A.!!$R2	2071
9	TraesCS7B01G281700	chr7A	555473183	555481328	8145	True	1478.400000	4115	92.674800	833	3686	5	chr7A.!!$R4	2853
10	TraesCS7B01G281700	chr7A	555465892	555468529	2637	True	1089.000000	1862	91.335000	936	3686	3	chr7A.!!$R3	2750
11	TraesCS7B01G281700	chr6A	310194599	310195301	702	True	571.500000	893	96.095000	1	846	2	chr6A.!!$R1	845
12	TraesCS7B01G281700	chr6A	356200359	356201104	745	True	562.000000	926	96.615500	1	544	2	chr6A.!!$R2	543
13	TraesCS7B01G281700	chr4A	4630321	4631221	900	False	582.000000	920	97.135000	1	846	2	chr4A.!!$F1	845
14	TraesCS7B01G281700	chr3A	257251737	257252289	552	True	920.000000	920	96.383000	1	544	1	chr3A.!!$R1	543
15	TraesCS7B01G281700	chr3A	84016875	84017562	687	False	541.000000	817	96.268000	1	846	2	chr3A.!!$F1	845
16	TraesCS7B01G281700	chr2A	598627072	598628328	1256	False	408.666667	767	98.290667	1	845	3	chr2A.!!$F1	844
17	TraesCS7B01G281700	chr3B	754307119	754307652	533	False	418.000000	418	80.952000	1	522	1	chr3B.!!$F1	521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
975	1802	0.031585	GGCCGAAGTCAAACCAAACC	59.968	55.0	0.0	0.0	0.0	3.27	F
976	1803	0.741915	GCCGAAGTCAAACCAAACCA	59.258	50.0	0.0	0.0	0.0	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2625	3554	0.465460	TCTCCAAGCGCAAACCAGTT	60.465	50.0	11.47	0.0	0.00	3.16	R
2909	3852	0.607489	ATCCAGAACCACACTGCTGC	60.607	55.0	0.00	0.0	34.47	5.25	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
853	1673	3.561725	CCTAGCATCGCCCTTAAAGAAAG	59.438	47.826	0.00	0.00	34.73	2.62
930	1751	2.993008	GGTACCCCGAACCTTCCC	59.007	66.667	0.00	0.00	33.97	3.97
963	1790	3.757248	CTCCCCATTCCGGCCGAAG	62.757	68.421	30.73	11.63	32.78	3.79
964	1791	4.109675	CCCCATTCCGGCCGAAGT	62.110	66.667	30.73	0.00	32.78	3.01
975	1802	0.031585	GGCCGAAGTCAAACCAAACC	59.968	55.000	0.00	0.00	0.00	3.27
976	1803	0.741915	GCCGAAGTCAAACCAAACCA	59.258	50.000	0.00	0.00	0.00	3.67
977	1804	1.135333	GCCGAAGTCAAACCAAACCAA	59.865	47.619	0.00	0.00	0.00	3.67
978	1805	2.417515	GCCGAAGTCAAACCAAACCAAA	60.418	45.455	0.00	0.00	0.00	3.28
979	1806	3.739830	GCCGAAGTCAAACCAAACCAAAT	60.740	43.478	0.00	0.00	0.00	2.32
980	1807	4.048504	CCGAAGTCAAACCAAACCAAATC	58.951	43.478	0.00	0.00	0.00	2.17
981	1808	4.048504	CGAAGTCAAACCAAACCAAATCC	58.951	43.478	0.00	0.00	0.00	3.01
982	1809	4.202111	CGAAGTCAAACCAAACCAAATCCT	60.202	41.667	0.00	0.00	0.00	3.24
983	1810	4.937201	AGTCAAACCAAACCAAATCCTC	57.063	40.909	0.00	0.00	0.00	3.71
984	1811	3.317993	AGTCAAACCAAACCAAATCCTCG	59.682	43.478	0.00	0.00	0.00	4.63
1329	2156	0.814010	ACAAGCGCACGGAGAAACTT	60.814	50.000	11.47	0.00	0.00	2.66
1560	2426	1.461559	CCGTTCTAGAGTCCCTTCGT	58.538	55.000	0.00	0.00	0.00	3.85
1829	2719	3.065233	CGTCTCTCCAGTCTCAATCTCTG	59.935	52.174	0.00	0.00	0.00	3.35
1830	2720	4.016444	GTCTCTCCAGTCTCAATCTCTGT	58.984	47.826	0.00	0.00	0.00	3.41
1859	2749	5.200368	ACTTGAAATTGTTCCATCCACAC	57.800	39.130	0.00	0.00	32.28	3.82
1967	2864	6.720309	TCTCAAAGTTATTCCATCCACATCA	58.280	36.000	0.00	0.00	0.00	3.07
2436	3362	5.366482	TGGTTATTCATGATTTCCGAGGA	57.634	39.130	0.00	0.00	0.00	3.71
2570	3499	6.801539	TGAGATAAAAGACGAATTGCAGTT	57.198	33.333	0.00	0.00	0.00	3.16
2588	3517	4.574828	GCAGTTTCTACAGTTTCCAACAGA	59.425	41.667	0.00	0.00	0.00	3.41
2701	3630	6.608405	TGAATGCTGAATCCATGGTTAATTCT	59.392	34.615	19.84	5.15	31.99	2.40
2740	3669	5.617087	GCTTGATCCGTACTTTTTGAGGAAC	60.617	44.000	0.00	0.00	34.35	3.62
2821	3754	3.760684	GAGACATGGCTGAGTTTTCCAAT	59.239	43.478	5.31	0.00	33.04	3.16
2822	3755	3.508793	AGACATGGCTGAGTTTTCCAATG	59.491	43.478	0.00	0.00	33.04	2.82
2824	3757	4.091549	ACATGGCTGAGTTTTCCAATGAT	58.908	39.130	0.00	0.00	33.04	2.45
2908	3851	6.305693	TGTCTGTCTCGATATGACACTATG	57.694	41.667	2.11	0.00	39.23	2.23
2909	3852	5.239525	TGTCTGTCTCGATATGACACTATGG	59.760	44.000	2.11	0.00	39.23	2.74
2910	3853	4.216472	TCTGTCTCGATATGACACTATGGC	59.784	45.833	2.11	0.00	39.23	4.40
2911	3854	3.888930	TGTCTCGATATGACACTATGGCA	59.111	43.478	2.11	0.00	41.29	4.92
2920	3863	2.474561	CACTATGGCAGCAGTGTGG	58.525	57.895	18.92	0.00	37.87	4.17
2941	3884	3.458189	GTTCTGGATATAGTGCGCTTGT	58.542	45.455	9.73	0.00	0.00	3.16
3092	4037	4.459337	GGCAAAGGCTAAATGTAGTTCTGT	59.541	41.667	0.00	0.00	40.87	3.41
3178	4137	8.458843	CGGGTAAAAGCATATGGAATAAATAGG	58.541	37.037	4.56	0.00	29.06	2.57
3405	4373	9.500701	TGCCCACCATATATGTTTAGAGATATA	57.499	33.333	11.73	0.00	31.05	0.86
3440	4408	3.501062	GGTGTTACTCTACTTGTTTGGCC	59.499	47.826	0.00	0.00	0.00	5.36
3463	4431	2.033299	CGCTTCTCCTGTTTGCAAAGAA	59.967	45.455	13.26	11.00	0.00	2.52
3514	4502	2.766229	GGGGGTCTCTCCAGCCTC	60.766	72.222	0.00	0.00	38.11	4.70
3515	4503	2.366570	GGGGTCTCTCCAGCCTCT	59.633	66.667	0.00	0.00	38.11	3.69
3516	4504	2.063378	GGGGTCTCTCCAGCCTCTG	61.063	68.421	0.00	0.00	38.11	3.35
3517	4505	2.730524	GGGTCTCTCCAGCCTCTGC	61.731	68.421	0.00	0.00	38.11	4.26
3518	4506	1.986757	GGTCTCTCCAGCCTCTGCA	60.987	63.158	0.00	0.00	41.13	4.41
3519	4507	1.336632	GGTCTCTCCAGCCTCTGCAT	61.337	60.000	0.00	0.00	41.13	3.96
3520	4508	0.104671	GTCTCTCCAGCCTCTGCATC	59.895	60.000	0.00	0.00	41.13	3.91
3521	4509	0.325016	TCTCTCCAGCCTCTGCATCA	60.325	55.000	0.00	0.00	41.13	3.07
3522	4510	0.105224	CTCTCCAGCCTCTGCATCAG	59.895	60.000	0.00	0.00	41.13	2.90
3523	4511	1.146485	CTCCAGCCTCTGCATCAGG	59.854	63.158	7.38	7.38	41.13	3.86
3524	4512	1.306397	TCCAGCCTCTGCATCAGGA	60.306	57.895	14.75	1.81	41.13	3.86
3525	4513	1.153208	CCAGCCTCTGCATCAGGAC	60.153	63.158	14.75	6.99	41.13	3.85
3526	4514	1.521010	CAGCCTCTGCATCAGGACG	60.521	63.158	14.75	2.19	41.13	4.79
3527	4515	1.683707	AGCCTCTGCATCAGGACGA	60.684	57.895	14.75	0.00	41.13	4.20
3528	4516	1.047596	AGCCTCTGCATCAGGACGAT	61.048	55.000	14.75	0.00	41.13	3.73
3535	4523	2.586418	CATCAGGACGATGCAGACG	58.414	57.895	13.19	13.19	44.95	4.18
3536	4524	0.873312	CATCAGGACGATGCAGACGG	60.873	60.000	17.71	3.28	44.95	4.79
3537	4525	2.635229	ATCAGGACGATGCAGACGGC	62.635	60.000	17.71	15.30	45.13	5.68
3540	4528	2.434185	GACGATGCAGACGGCCAA	60.434	61.111	17.71	0.00	43.89	4.52
3541	4529	2.031919	ACGATGCAGACGGCCAAA	59.968	55.556	17.71	0.00	43.89	3.28
3542	4530	1.970917	GACGATGCAGACGGCCAAAG	61.971	60.000	17.71	0.00	43.89	2.77
3543	4531	2.034879	CGATGCAGACGGCCAAAGT	61.035	57.895	2.24	0.00	43.89	2.66
3544	4532	1.577328	CGATGCAGACGGCCAAAGTT	61.577	55.000	2.24	0.00	43.89	2.66
3545	4533	0.109597	GATGCAGACGGCCAAAGTTG	60.110	55.000	2.24	0.00	43.89	3.16
3546	4534	0.537143	ATGCAGACGGCCAAAGTTGA	60.537	50.000	2.24	0.00	43.89	3.18
3547	4535	1.165907	TGCAGACGGCCAAAGTTGAG	61.166	55.000	2.24	0.00	43.89	3.02
3548	4536	1.856265	GCAGACGGCCAAAGTTGAGG	61.856	60.000	2.24	0.00	36.11	3.86
3549	4537	0.250295	CAGACGGCCAAAGTTGAGGA	60.250	55.000	2.24	0.00	0.00	3.71
3550	4538	0.250338	AGACGGCCAAAGTTGAGGAC	60.250	55.000	2.24	0.00	0.00	3.85
3551	4539	0.250338	GACGGCCAAAGTTGAGGACT	60.250	55.000	2.24	0.00	41.47	3.85
3673	4661	2.958355	GCCTAATAGCCTTGCCATTTCA	59.042	45.455	0.00	0.00	0.00	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
693	1307	4.570874	GATCCCCTCGCTTGGGCC	62.571	72.222	0.00	0.00	45.78	5.80
963	1790	3.638484	CGAGGATTTGGTTTGGTTTGAC	58.362	45.455	0.00	0.00	0.00	3.18
964	1791	2.035321	GCGAGGATTTGGTTTGGTTTGA	59.965	45.455	0.00	0.00	0.00	2.69
975	1802	1.884926	GAGGCGAGGCGAGGATTTG	60.885	63.158	0.00	0.00	0.00	2.32
976	1803	2.501610	GAGGCGAGGCGAGGATTT	59.498	61.111	0.00	0.00	0.00	2.17
977	1804	3.905678	CGAGGCGAGGCGAGGATT	61.906	66.667	0.00	0.00	0.00	3.01
1300	2127	3.173240	GCGCTTGTCGACGAGGAC	61.173	66.667	29.62	15.68	41.67	3.85
1329	2156	1.557099	ACCATCTGTAGGCGAGAACA	58.443	50.000	0.00	0.00	0.00	3.18
1560	2426	0.044092	TGGGGCTATTGAGGGTGAGA	59.956	55.000	0.00	0.00	0.00	3.27
1829	2719	6.377327	TGGAACAATTTCAAGTTGAGAGAC	57.623	37.500	5.56	0.00	31.92	3.36
1859	2749	5.230323	AGAGAACATGATGGATGGATCAG	57.770	43.478	0.00	0.00	35.81	2.90
1934	2831	5.470098	TGGAATAACTTTGAGAGACTGCAAC	59.530	40.000	0.00	0.00	0.00	4.17
1967	2864	5.133322	ACAGAACACTATCATGGGATGGATT	59.867	40.000	0.00	0.00	35.70	3.01
2436	3362	7.751732	TGACGAATTCAAATTCATTTCGATCT	58.248	30.769	14.11	1.32	43.85	2.75
2625	3554	0.465460	TCTCCAAGCGCAAACCAGTT	60.465	50.000	11.47	0.00	0.00	3.16
2701	3630	5.523552	CGGATCAAGCATGTAAACATACAGA	59.476	40.000	0.00	0.00	34.26	3.41
2740	3669	2.880268	TCTTGCAGACAACAGTCAATGG	59.120	45.455	0.00	0.00	34.69	3.16
2821	3754	9.547753	GCTTTAATTCCTACATACTCTTGATCA	57.452	33.333	0.00	0.00	0.00	2.92
2822	3755	9.771534	AGCTTTAATTCCTACATACTCTTGATC	57.228	33.333	0.00	0.00	0.00	2.92
2904	3847	1.089920	GAACCACACTGCTGCCATAG	58.910	55.000	0.00	0.00	0.00	2.23
2905	3848	0.692476	AGAACCACACTGCTGCCATA	59.308	50.000	0.00	0.00	0.00	2.74
2906	3849	0.892358	CAGAACCACACTGCTGCCAT	60.892	55.000	0.00	0.00	0.00	4.40
2907	3850	1.526686	CAGAACCACACTGCTGCCA	60.527	57.895	0.00	0.00	0.00	4.92
2908	3851	2.263741	CCAGAACCACACTGCTGCC	61.264	63.158	0.00	0.00	34.47	4.85
2909	3852	0.607489	ATCCAGAACCACACTGCTGC	60.607	55.000	0.00	0.00	34.47	5.25
2910	3853	2.768253	TATCCAGAACCACACTGCTG	57.232	50.000	0.00	0.00	34.47	4.41
2911	3854	4.033709	ACTATATCCAGAACCACACTGCT	58.966	43.478	0.00	0.00	34.47	4.24
2920	3863	3.458189	ACAAGCGCACTATATCCAGAAC	58.542	45.455	11.47	0.00	0.00	3.01
3153	4110	8.251026	GCCTATTTATTCCATATGCTTTTACCC	58.749	37.037	0.00	0.00	0.00	3.69
3375	4343	7.017551	TCTCTAAACATATATGGTGGGCATTCT	59.982	37.037	16.96	0.00	0.00	2.40
3405	4373	9.086758	AGTAGAGTAACACCTACATAACTGTTT	57.913	33.333	0.00	0.00	38.11	2.83
3440	4408	1.172180	TTGCAAACAGGAGAAGCGGG	61.172	55.000	0.00	0.00	0.00	6.13
3497	4485	2.766229	GAGGCTGGAGAGACCCCC	60.766	72.222	0.00	0.00	38.00	5.40
3498	4486	2.063378	CAGAGGCTGGAGAGACCCC	61.063	68.421	0.00	0.00	38.00	4.95
3499	4487	2.730524	GCAGAGGCTGGAGAGACCC	61.731	68.421	0.00	0.00	38.00	4.46
3500	4488	1.336632	ATGCAGAGGCTGGAGAGACC	61.337	60.000	0.00	0.00	41.91	3.85
3501	4489	0.104671	GATGCAGAGGCTGGAGAGAC	59.895	60.000	0.00	0.00	41.91	3.36
3502	4490	0.325016	TGATGCAGAGGCTGGAGAGA	60.325	55.000	0.00	0.00	41.91	3.10
3503	4491	0.105224	CTGATGCAGAGGCTGGAGAG	59.895	60.000	0.00	0.00	41.91	3.20
3504	4492	1.335882	CCTGATGCAGAGGCTGGAGA	61.336	60.000	0.00	0.00	41.91	3.71
3505	4493	1.146485	CCTGATGCAGAGGCTGGAG	59.854	63.158	0.00	0.00	41.91	3.86
3506	4494	1.306397	TCCTGATGCAGAGGCTGGA	60.306	57.895	9.34	6.46	41.91	3.86
3507	4495	1.153208	GTCCTGATGCAGAGGCTGG	60.153	63.158	9.34	4.43	41.91	4.85
3508	4496	1.521010	CGTCCTGATGCAGAGGCTG	60.521	63.158	9.34	0.00	41.91	4.85
3509	4497	1.047596	ATCGTCCTGATGCAGAGGCT	61.048	55.000	9.34	0.00	41.91	4.58
3510	4498	1.445095	ATCGTCCTGATGCAGAGGC	59.555	57.895	9.34	4.81	35.45	4.70
3518	4506	1.439228	CCGTCTGCATCGTCCTGAT	59.561	57.895	9.82	0.00	38.01	2.90
3519	4507	2.885113	CCGTCTGCATCGTCCTGA	59.115	61.111	9.82	0.00	0.00	3.86
3520	4508	2.887568	GCCGTCTGCATCGTCCTG	60.888	66.667	9.82	0.00	40.77	3.86
3521	4509	4.148825	GGCCGTCTGCATCGTCCT	62.149	66.667	9.82	0.00	43.89	3.85
3522	4510	3.950794	TTGGCCGTCTGCATCGTCC	62.951	63.158	0.00	7.44	43.89	4.79
3523	4511	1.970917	CTTTGGCCGTCTGCATCGTC	61.971	60.000	0.00	0.00	43.89	4.20
3524	4512	2.031919	TTTGGCCGTCTGCATCGT	59.968	55.556	0.00	0.00	43.89	3.73
3525	4513	1.577328	AACTTTGGCCGTCTGCATCG	61.577	55.000	0.00	4.75	43.89	3.84
3526	4514	0.109597	CAACTTTGGCCGTCTGCATC	60.110	55.000	0.00	0.00	43.89	3.91
3527	4515	0.537143	TCAACTTTGGCCGTCTGCAT	60.537	50.000	0.00	0.00	43.89	3.96
3528	4516	1.153066	TCAACTTTGGCCGTCTGCA	60.153	52.632	0.00	0.00	43.89	4.41
3529	4517	1.576421	CTCAACTTTGGCCGTCTGC	59.424	57.895	0.00	0.00	40.16	4.26
3530	4518	0.250295	TCCTCAACTTTGGCCGTCTG	60.250	55.000	0.00	0.00	0.00	3.51
3531	4519	0.250338	GTCCTCAACTTTGGCCGTCT	60.250	55.000	0.00	0.00	0.00	4.18
3532	4520	0.250338	AGTCCTCAACTTTGGCCGTC	60.250	55.000	0.00	0.00	33.03	4.79
3533	4521	0.182775	AAGTCCTCAACTTTGGCCGT	59.817	50.000	0.00	0.00	46.26	5.68
3534	4522	0.593128	CAAGTCCTCAACTTTGGCCG	59.407	55.000	0.00	0.00	46.26	6.13
3535	4523	0.961753	CCAAGTCCTCAACTTTGGCC	59.038	55.000	0.00	0.00	46.26	5.36
3536	4524	1.692411	ACCAAGTCCTCAACTTTGGC	58.308	50.000	2.22	0.00	46.26	4.52
3537	4525	3.023832	ACAACCAAGTCCTCAACTTTGG	58.976	45.455	0.82	0.82	46.26	3.28
3538	4526	4.423732	CAACAACCAAGTCCTCAACTTTG	58.576	43.478	0.00	0.00	46.26	2.77
3539	4527	3.119137	GCAACAACCAAGTCCTCAACTTT	60.119	43.478	0.00	0.00	46.26	2.66
3541	4529	2.024414	GCAACAACCAAGTCCTCAACT	58.976	47.619	0.00	0.00	41.10	3.16
3542	4530	2.024414	AGCAACAACCAAGTCCTCAAC	58.976	47.619	0.00	0.00	0.00	3.18
3543	4531	2.426738	CAAGCAACAACCAAGTCCTCAA	59.573	45.455	0.00	0.00	0.00	3.02
3544	4532	2.023673	CAAGCAACAACCAAGTCCTCA	58.976	47.619	0.00	0.00	0.00	3.86
3545	4533	1.269257	GCAAGCAACAACCAAGTCCTC	60.269	52.381	0.00	0.00	0.00	3.71
3546	4534	0.746659	GCAAGCAACAACCAAGTCCT	59.253	50.000	0.00	0.00	0.00	3.85
3547	4535	0.249447	GGCAAGCAACAACCAAGTCC	60.249	55.000	0.00	0.00	0.00	3.85
3548	4536	0.249447	GGGCAAGCAACAACCAAGTC	60.249	55.000	0.00	0.00	0.00	3.01
3549	4537	0.687427	AGGGCAAGCAACAACCAAGT	60.687	50.000	0.00	0.00	0.00	3.16
3550	4538	0.465287	AAGGGCAAGCAACAACCAAG	59.535	50.000	0.00	0.00	0.00	3.61
3551	4539	0.177604	CAAGGGCAAGCAACAACCAA	59.822	50.000	0.00	0.00	0.00	3.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.