Multiple sequence alignment - TraesCS7B01G281100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G281100 chr7B 100.000 3907 0 0 1 3907 513959288 513955382 0.000000e+00 7215.0
1 TraesCS7B01G281100 chr7B 78.640 941 165 21 955 1885 513771622 513770708 3.360000e-165 592.0
2 TraesCS7B01G281100 chr7B 80.851 517 86 12 2436 2944 513770331 513769820 1.020000e-105 394.0
3 TraesCS7B01G281100 chr2A 94.382 1958 94 12 976 2921 137565953 137564000 0.000000e+00 2992.0
4 TraesCS7B01G281100 chr2A 85.139 323 44 3 394 716 356675588 356675906 1.050000e-85 327.0
5 TraesCS7B01G281100 chr2A 94.574 129 6 1 3025 3152 183328333 183328461 8.560000e-47 198.0
6 TraesCS7B01G281100 chr2A 94.286 35 2 0 278 312 764782098 764782132 2.000000e-03 54.7
7 TraesCS7B01G281100 chr7D 96.345 1286 37 5 870 2146 486169231 486167947 0.000000e+00 2106.0
8 TraesCS7B01G281100 chr7D 96.350 822 30 0 2218 3039 486167965 486167144 0.000000e+00 1352.0
9 TraesCS7B01G281100 chr7D 94.154 804 37 5 91 886 486170054 486169253 0.000000e+00 1216.0
10 TraesCS7B01G281100 chr7D 93.646 661 36 3 3146 3802 486167150 486166492 0.000000e+00 983.0
11 TraesCS7B01G281100 chr7D 77.321 948 176 22 955 1882 486107992 486107064 1.240000e-144 523.0
12 TraesCS7B01G281100 chr7D 77.254 721 137 22 2245 2944 486106976 486106262 7.870000e-107 398.0
13 TraesCS7B01G281100 chr7D 74.844 803 153 35 1088 1874 486242833 486242064 6.300000e-83 318.0
14 TraesCS7B01G281100 chr7A 85.555 1163 114 21 749 1886 554503014 554501881 0.000000e+00 1168.0
15 TraesCS7B01G281100 chr7A 84.830 824 112 9 2214 3029 554501811 554500993 0.000000e+00 817.0
16 TraesCS7B01G281100 chr7A 88.342 386 30 10 3324 3702 554787642 554787265 2.140000e-122 449.0
17 TraesCS7B01G281100 chr7A 78.895 507 96 11 2436 2935 554490297 554489795 2.250000e-87 333.0
18 TraesCS7B01G281100 chr7A 87.640 89 10 1 3714 3802 171433364 171433277 6.910000e-18 102.0
19 TraesCS7B01G281100 chr2B 83.529 340 53 3 410 748 321713702 321713365 8.150000e-82 315.0
20 TraesCS7B01G281100 chr2B 89.617 183 15 4 85 265 662678751 662678571 3.040000e-56 230.0
21 TraesCS7B01G281100 chr2B 89.349 169 14 3 85 251 451341808 451341974 3.960000e-50 209.0
22 TraesCS7B01G281100 chr2B 93.431 137 7 2 3020 3156 25365965 25366099 6.620000e-48 202.0
23 TraesCS7B01G281100 chr6A 79.303 459 74 14 1013 1464 522044504 522044948 6.340000e-78 302.0
24 TraesCS7B01G281100 chr6A 84.513 226 24 6 85 309 24412336 24412121 3.060000e-51 213.0
25 TraesCS7B01G281100 chr6A 83.436 163 25 2 96 257 184667641 184667802 2.430000e-32 150.0
26 TraesCS7B01G281100 chr6A 76.950 282 49 12 1012 1280 51480139 51479861 3.150000e-31 147.0
27 TraesCS7B01G281100 chr6A 87.059 85 10 1 3715 3799 74233445 74233362 1.160000e-15 95.3
28 TraesCS7B01G281100 chr6B 89.268 205 20 2 111 314 160672404 160672201 5.010000e-64 255.0
29 TraesCS7B01G281100 chr1D 87.678 211 22 4 100 309 372459201 372458994 3.900000e-60 243.0
30 TraesCS7B01G281100 chr1D 95.200 125 5 1 3038 3162 464736227 464736350 3.080000e-46 196.0
31 TraesCS7B01G281100 chr1D 88.000 75 9 0 322 396 79996354 79996428 5.380000e-14 89.8
32 TraesCS7B01G281100 chr5B 81.724 290 42 7 97 384 358273886 358274166 8.440000e-57 231.0
33 TraesCS7B01G281100 chr5B 100.000 110 0 0 3041 3150 599617648 599617757 1.840000e-48 204.0
34 TraesCS7B01G281100 chr5B 98.261 115 2 0 3033 3147 9643423 9643309 6.620000e-48 202.0
35 TraesCS7B01G281100 chrUn 97.500 120 3 0 3032 3151 77508821 77508702 5.120000e-49 206.0
36 TraesCS7B01G281100 chr3B 98.261 115 1 1 3038 3152 63469119 63469006 2.380000e-47 200.0
37 TraesCS7B01G281100 chr3B 88.235 119 12 2 103 221 657943233 657943117 1.460000e-29 141.0
38 TraesCS7B01G281100 chr4A 96.667 120 2 2 3040 3159 734576246 734576129 8.560000e-47 198.0
39 TraesCS7B01G281100 chr1B 97.414 116 3 0 3040 3155 386204593 386204478 8.560000e-47 198.0
40 TraesCS7B01G281100 chr1B 86.667 90 10 1 3710 3799 87972973 87973060 8.930000e-17 99.0
41 TraesCS7B01G281100 chr1B 88.000 75 9 0 322 396 130784398 130784472 5.380000e-14 89.8
42 TraesCS7B01G281100 chr1B 86.301 73 10 0 313 385 131124289 131124361 3.240000e-11 80.5
43 TraesCS7B01G281100 chr2D 90.588 85 8 0 312 396 627645286 627645370 3.190000e-21 113.0
44 TraesCS7B01G281100 chr1A 83.721 86 13 1 3714 3799 482834268 482834352 3.240000e-11 80.5
45 TraesCS7B01G281100 chr6D 89.286 56 5 1 1226 1280 39673271 39673216 7.000000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G281100 chr7B 513955382 513959288 3906 True 7215.00 7215 100.00000 1 3907 1 chr7B.!!$R1 3906
1 TraesCS7B01G281100 chr7B 513769820 513771622 1802 True 493.00 592 79.74550 955 2944 2 chr7B.!!$R2 1989
2 TraesCS7B01G281100 chr2A 137564000 137565953 1953 True 2992.00 2992 94.38200 976 2921 1 chr2A.!!$R1 1945
3 TraesCS7B01G281100 chr7D 486166492 486170054 3562 True 1414.25 2106 95.12375 91 3802 4 chr7D.!!$R3 3711
4 TraesCS7B01G281100 chr7D 486106262 486107992 1730 True 460.50 523 77.28750 955 2944 2 chr7D.!!$R2 1989
5 TraesCS7B01G281100 chr7D 486242064 486242833 769 True 318.00 318 74.84400 1088 1874 1 chr7D.!!$R1 786
6 TraesCS7B01G281100 chr7A 554500993 554503014 2021 True 992.50 1168 85.19250 749 3029 2 chr7A.!!$R4 2280
7 TraesCS7B01G281100 chr7A 554489795 554490297 502 True 333.00 333 78.89500 2436 2935 1 chr7A.!!$R2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.032615 TGTCTTTTGGGTTGTGGCCT 60.033 50.000 3.32 0.00 0.0 5.19 F
604 606 0.100682 GAATGCAGAGCGGTCGAGTA 59.899 55.000 9.28 6.17 0.0 2.59 F
606 608 0.101399 ATGCAGAGCGGTCGAGTAAG 59.899 55.000 9.28 0.00 0.0 2.34 F
1357 1424 1.347707 AGGGCATTCAGAAACTCGTCA 59.652 47.619 0.00 0.00 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 1856 1.004277 TGCACAGGTAATCTTGACCCC 59.996 52.381 0.00 0.00 37.73 4.95 R
1935 2036 2.032620 CACCTATCCTCTTGTACGCCT 58.967 52.381 0.00 0.00 0.00 5.52 R
2002 2107 2.252535 TGGTGGATGGATCTCAGTGA 57.747 50.000 0.00 0.00 0.00 3.41 R
3130 3342 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.870190 GGTGGTTCGACAAGTGGT 57.130 55.556 0.00 0.00 0.00 4.16
18 19 2.317230 GGTGGTTCGACAAGTGGTG 58.683 57.895 0.00 0.00 0.00 4.17
19 20 1.647084 GTGGTTCGACAAGTGGTGC 59.353 57.895 0.00 0.00 0.00 5.01
20 21 0.814010 GTGGTTCGACAAGTGGTGCT 60.814 55.000 0.00 0.00 0.00 4.40
21 22 0.753867 TGGTTCGACAAGTGGTGCTA 59.246 50.000 0.00 0.00 0.00 3.49
22 23 1.270094 TGGTTCGACAAGTGGTGCTAG 60.270 52.381 0.00 0.00 0.00 3.42
23 24 0.790814 GTTCGACAAGTGGTGCTAGC 59.209 55.000 8.10 8.10 0.00 3.42
24 25 0.391228 TTCGACAAGTGGTGCTAGCA 59.609 50.000 14.93 14.93 0.00 3.49
25 26 0.391228 TCGACAAGTGGTGCTAGCAA 59.609 50.000 21.29 0.91 0.00 3.91
26 27 1.001974 TCGACAAGTGGTGCTAGCAAT 59.998 47.619 21.29 2.85 0.00 3.56
27 28 1.129251 CGACAAGTGGTGCTAGCAATG 59.871 52.381 21.29 15.23 0.00 2.82
28 29 1.470098 GACAAGTGGTGCTAGCAATGG 59.530 52.381 21.29 8.62 0.00 3.16
29 30 1.202927 ACAAGTGGTGCTAGCAATGGT 60.203 47.619 21.29 9.27 0.00 3.55
30 31 1.200716 CAAGTGGTGCTAGCAATGGTG 59.799 52.381 21.29 10.39 0.00 4.17
31 32 0.322816 AGTGGTGCTAGCAATGGTGG 60.323 55.000 21.29 0.00 0.00 4.61
32 33 0.609131 GTGGTGCTAGCAATGGTGGT 60.609 55.000 21.29 0.00 39.33 4.16
33 34 0.608856 TGGTGCTAGCAATGGTGGTG 60.609 55.000 21.29 0.00 36.66 4.17
34 35 0.322456 GGTGCTAGCAATGGTGGTGA 60.322 55.000 21.29 0.00 36.66 4.02
35 36 1.683011 GGTGCTAGCAATGGTGGTGAT 60.683 52.381 21.29 0.00 36.66 3.06
36 37 1.402968 GTGCTAGCAATGGTGGTGATG 59.597 52.381 21.29 0.00 36.66 3.07
37 38 1.281577 TGCTAGCAATGGTGGTGATGA 59.718 47.619 16.84 0.00 36.66 2.92
38 39 2.290832 TGCTAGCAATGGTGGTGATGAA 60.291 45.455 16.84 0.00 36.66 2.57
39 40 2.357009 GCTAGCAATGGTGGTGATGAAG 59.643 50.000 10.63 0.00 36.66 3.02
40 41 2.885135 AGCAATGGTGGTGATGAAGA 57.115 45.000 0.00 0.00 33.11 2.87
41 42 3.377253 AGCAATGGTGGTGATGAAGAT 57.623 42.857 0.00 0.00 33.11 2.40
42 43 3.705051 AGCAATGGTGGTGATGAAGATT 58.295 40.909 0.00 0.00 33.11 2.40
43 44 4.091549 AGCAATGGTGGTGATGAAGATTT 58.908 39.130 0.00 0.00 33.11 2.17
44 45 4.159135 AGCAATGGTGGTGATGAAGATTTC 59.841 41.667 0.00 0.00 33.11 2.17
45 46 4.082081 GCAATGGTGGTGATGAAGATTTCA 60.082 41.667 0.00 0.00 45.01 2.69
46 47 8.289644 TAGCAATGGTGGTGATGAAGATTTCAT 61.290 37.037 4.09 4.09 43.44 2.57
67 68 5.948992 ATCTTGTGATGATGATGATGCTG 57.051 39.130 0.00 0.00 0.00 4.41
68 69 5.031066 TCTTGTGATGATGATGATGCTGA 57.969 39.130 0.00 0.00 0.00 4.26
69 70 5.621193 TCTTGTGATGATGATGATGCTGAT 58.379 37.500 0.00 0.00 0.00 2.90
70 71 5.470098 TCTTGTGATGATGATGATGCTGATG 59.530 40.000 0.00 0.00 0.00 3.07
71 72 4.968259 TGTGATGATGATGATGCTGATGA 58.032 39.130 0.00 0.00 0.00 2.92
72 73 5.560724 TGTGATGATGATGATGCTGATGAT 58.439 37.500 0.00 0.00 0.00 2.45
73 74 5.412594 TGTGATGATGATGATGCTGATGATG 59.587 40.000 0.00 0.00 0.00 3.07
74 75 5.643777 GTGATGATGATGATGCTGATGATGA 59.356 40.000 0.00 0.00 0.00 2.92
75 76 6.317391 GTGATGATGATGATGCTGATGATGAT 59.683 38.462 0.00 0.00 0.00 2.45
76 77 6.317140 TGATGATGATGATGCTGATGATGATG 59.683 38.462 0.00 0.00 0.00 3.07
77 78 5.804639 TGATGATGATGCTGATGATGATGA 58.195 37.500 0.00 0.00 0.00 2.92
78 79 6.418101 TGATGATGATGCTGATGATGATGAT 58.582 36.000 0.00 0.00 0.00 2.45
79 80 6.317140 TGATGATGATGCTGATGATGATGATG 59.683 38.462 0.00 0.00 0.00 3.07
80 81 5.804639 TGATGATGCTGATGATGATGATGA 58.195 37.500 0.00 0.00 0.00 2.92
81 82 6.418101 TGATGATGCTGATGATGATGATGAT 58.582 36.000 0.00 0.00 0.00 2.45
82 83 6.317140 TGATGATGCTGATGATGATGATGATG 59.683 38.462 0.00 0.00 0.00 3.07
83 84 5.804639 TGATGCTGATGATGATGATGATGA 58.195 37.500 0.00 0.00 0.00 2.92
84 85 6.418101 TGATGCTGATGATGATGATGATGAT 58.582 36.000 0.00 0.00 0.00 2.45
85 86 6.317140 TGATGCTGATGATGATGATGATGATG 59.683 38.462 0.00 0.00 0.00 3.07
86 87 5.804639 TGCTGATGATGATGATGATGATGA 58.195 37.500 0.00 0.00 0.00 2.92
87 88 6.418101 TGCTGATGATGATGATGATGATGAT 58.582 36.000 0.00 0.00 0.00 2.45
88 89 6.317140 TGCTGATGATGATGATGATGATGATG 59.683 38.462 0.00 0.00 0.00 3.07
89 90 6.540189 GCTGATGATGATGATGATGATGATGA 59.460 38.462 0.00 0.00 0.00 2.92
144 145 0.032615 TGTCTTTTGGGTTGTGGCCT 60.033 50.000 3.32 0.00 0.00 5.19
149 150 1.573108 TTTGGGTTGTGGCCTGAAAA 58.427 45.000 3.32 0.00 0.00 2.29
150 151 0.827368 TTGGGTTGTGGCCTGAAAAC 59.173 50.000 3.32 3.04 0.00 2.43
151 152 1.045911 TGGGTTGTGGCCTGAAAACC 61.046 55.000 16.48 16.48 41.14 3.27
152 153 1.045911 GGGTTGTGGCCTGAAAACCA 61.046 55.000 22.46 0.00 43.20 3.67
153 154 1.047801 GGTTGTGGCCTGAAAACCAT 58.952 50.000 18.62 0.00 41.44 3.55
154 155 1.270252 GGTTGTGGCCTGAAAACCATG 60.270 52.381 18.62 0.00 41.44 3.66
156 157 1.786937 TGTGGCCTGAAAACCATGTT 58.213 45.000 3.32 0.00 38.46 2.71
157 158 2.950781 TGTGGCCTGAAAACCATGTTA 58.049 42.857 3.32 0.00 38.46 2.41
165 166 5.988561 GCCTGAAAACCATGTTAAAATGACA 59.011 36.000 7.23 0.00 0.00 3.58
187 188 6.463360 ACACCAAAACTGTGTTTGAATTCTT 58.537 32.000 7.05 0.00 44.19 2.52
189 190 5.804979 ACCAAAACTGTGTTTGAATTCTTCG 59.195 36.000 7.05 0.00 40.29 3.79
198 199 7.032580 TGTGTTTGAATTCTTCGAATTTGTGT 58.967 30.769 7.05 0.00 35.61 3.72
228 230 1.847999 CAAAATCGCGGTCATTGCATC 59.152 47.619 6.13 0.00 0.00 3.91
232 234 2.277501 GCGGTCATTGCATCGTGC 60.278 61.111 0.00 3.44 45.29 5.34
312 314 5.216614 AGCGGTAAAAGAGAATATCCTCC 57.783 43.478 0.00 0.00 33.76 4.30
336 338 4.469552 CAACCGATTTCGACCCTTAAAAC 58.530 43.478 0.67 0.00 43.02 2.43
349 351 2.230864 CTTAAAACGCGCTTTTCTCGG 58.769 47.619 13.28 0.55 33.84 4.63
377 379 2.051692 CCCGGTTATAAGGGTCATGGA 58.948 52.381 0.00 0.00 42.67 3.41
390 392 3.720002 GGGTCATGGATTTAAGGGGTCTA 59.280 47.826 0.00 0.00 0.00 2.59
430 432 1.707427 CCCCTTGAGCTAGCCCATTAT 59.293 52.381 12.13 0.00 0.00 1.28
534 536 0.394488 TCCTCGGTCGCTTCAGATCT 60.394 55.000 0.00 0.00 0.00 2.75
537 539 1.025113 TCGGTCGCTTCAGATCTCGT 61.025 55.000 0.00 0.00 0.00 4.18
538 540 0.863538 CGGTCGCTTCAGATCTCGTG 60.864 60.000 0.00 0.00 0.00 4.35
561 563 2.842936 CCTTCGCCTCCCCGGTAT 60.843 66.667 0.00 0.00 34.25 2.73
604 606 0.100682 GAATGCAGAGCGGTCGAGTA 59.899 55.000 9.28 6.17 0.00 2.59
606 608 0.101399 ATGCAGAGCGGTCGAGTAAG 59.899 55.000 9.28 0.00 0.00 2.34
799 808 3.834231 GGCAATATAAGGGGCATTGATGT 59.166 43.478 0.00 0.00 32.54 3.06
877 886 7.751768 AAAAGAGAGGAATTTCACTAACCTG 57.248 36.000 0.00 0.00 0.00 4.00
886 895 7.072454 AGGAATTTCACTAACCTGCCATAGATA 59.928 37.037 0.00 0.00 0.00 1.98
887 896 7.719633 GGAATTTCACTAACCTGCCATAGATAA 59.280 37.037 0.00 0.00 0.00 1.75
888 897 9.120538 GAATTTCACTAACCTGCCATAGATAAA 57.879 33.333 0.00 0.00 0.00 1.40
1212 1279 3.744719 CTGAACGAGTCCGCCCGA 61.745 66.667 0.00 0.00 39.95 5.14
1215 1282 3.398353 GAACGAGTCCGCCCGAGAG 62.398 68.421 0.00 0.00 39.95 3.20
1357 1424 1.347707 AGGGCATTCAGAAACTCGTCA 59.652 47.619 0.00 0.00 0.00 4.35
1581 1648 4.096003 GCTGCCAGCCCCGTTCTA 62.096 66.667 5.06 0.00 34.48 2.10
1678 1751 1.382695 GGATCCCCGGTGAAGGAGA 60.383 63.158 0.00 0.00 35.08 3.71
1753 1850 2.965831 CCTAGTGCTATTGGAGGTGCTA 59.034 50.000 0.00 0.00 0.00 3.49
1759 1856 3.324846 TGCTATTGGAGGTGCTAGTATGG 59.675 47.826 0.00 0.00 0.00 2.74
1935 2036 9.571810 GTTGCATATGTTCATAAATCTTGTCAA 57.428 29.630 4.29 0.00 0.00 3.18
2157 2264 7.340487 TGATGTGTATCTGTCAGTCTGTCTATT 59.660 37.037 0.00 0.00 34.31 1.73
2168 2275 7.093354 GTCAGTCTGTCTATTCATCAAGAACA 58.907 38.462 0.00 0.00 39.49 3.18
2309 2416 0.532862 AGGCGTCAAGATATTGGCCG 60.533 55.000 12.73 10.44 45.00 6.13
2339 2446 4.884744 TGAATTTTGGTGTTTTCGAGGAGA 59.115 37.500 0.00 0.00 0.00 3.71
2341 2448 6.040391 TGAATTTTGGTGTTTTCGAGGAGATT 59.960 34.615 0.00 0.00 0.00 2.40
2432 2545 9.565213 CCAATTCTTTCTGTTAGTTGATCATTC 57.435 33.333 0.00 0.00 0.00 2.67
2464 2665 9.002600 TGTTATAATCAATTACTAGCAGCATGG 57.997 33.333 0.00 0.00 35.86 3.66
2767 2969 4.321601 GGACGAGGTGAATGAGATGATAGG 60.322 50.000 0.00 0.00 0.00 2.57
3032 3244 4.447138 TGGACCATGTTTCAACTACCTT 57.553 40.909 0.00 0.00 0.00 3.50
3033 3245 4.798882 TGGACCATGTTTCAACTACCTTT 58.201 39.130 0.00 0.00 0.00 3.11
3034 3246 5.942961 TGGACCATGTTTCAACTACCTTTA 58.057 37.500 0.00 0.00 0.00 1.85
3035 3247 6.001460 TGGACCATGTTTCAACTACCTTTAG 58.999 40.000 0.00 0.00 0.00 1.85
3036 3248 6.002082 GGACCATGTTTCAACTACCTTTAGT 58.998 40.000 0.00 0.00 40.55 2.24
3037 3249 7.163441 GGACCATGTTTCAACTACCTTTAGTA 58.837 38.462 0.00 0.00 37.59 1.82
3038 3250 7.827729 GGACCATGTTTCAACTACCTTTAGTAT 59.172 37.037 0.00 0.00 37.59 2.12
3039 3251 9.880157 GACCATGTTTCAACTACCTTTAGTATA 57.120 33.333 0.00 0.00 37.59 1.47
3048 3260 9.804977 TCAACTACCTTTAGTATATACTCCCTC 57.195 37.037 18.68 0.00 37.59 4.30
3049 3261 9.022884 CAACTACCTTTAGTATATACTCCCTCC 57.977 40.741 18.68 0.00 37.59 4.30
3050 3262 7.401246 ACTACCTTTAGTATATACTCCCTCCG 58.599 42.308 18.68 5.99 36.73 4.63
3051 3263 6.211505 ACCTTTAGTATATACTCCCTCCGT 57.788 41.667 18.68 6.56 37.73 4.69
3052 3264 6.618501 ACCTTTAGTATATACTCCCTCCGTT 58.381 40.000 18.68 0.00 37.73 4.44
3053 3265 6.718912 ACCTTTAGTATATACTCCCTCCGTTC 59.281 42.308 18.68 0.00 37.73 3.95
3054 3266 6.128063 CCTTTAGTATATACTCCCTCCGTTCG 60.128 46.154 18.68 0.00 37.73 3.95
3055 3267 3.683802 AGTATATACTCCCTCCGTTCGG 58.316 50.000 9.71 4.74 0.00 4.30
3056 3268 2.965671 ATATACTCCCTCCGTTCGGA 57.034 50.000 13.34 13.34 0.00 4.55
3057 3269 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
3058 3270 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
3059 3271 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3060 3272 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3061 3273 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3062 3274 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3063 3275 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3064 3276 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3065 3277 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3066 3278 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3067 3279 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3068 3280 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3069 3281 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3070 3282 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
3071 3283 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
3072 3284 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
3073 3285 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
3074 3286 6.400727 CGTTCGGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
3075 3287 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
3076 3288 5.350365 TCGGAATTACTTGTCTCGAAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
3077 3289 5.350365 CGGAATTACTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
3078 3290 6.037172 CGGAATTACTTGTCTCGAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
3079 3291 7.189512 GGAATTACTTGTCTCGAAAATGGATG 58.810 38.462 0.00 0.00 0.00 3.51
3080 3292 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
3081 3293 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
3082 3294 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
3083 3295 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
3084 3296 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
3085 3297 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
3086 3298 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
3087 3299 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
3088 3300 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
3089 3301 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
3090 3302 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
3091 3303 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
3092 3304 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
3121 3333 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
3122 3334 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
3123 3335 8.515414 CATCTAGATACATCCATTTCTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
3124 3336 8.459911 TCTAGATACATCCATTTCTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
3125 3337 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
3126 3338 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
3127 3339 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
3128 3340 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
3129 3341 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
3130 3342 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
3131 3343 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
3132 3344 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
3133 3345 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
3134 3346 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
3135 3347 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
3136 3348 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
3137 3349 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
3138 3350 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
3139 3351 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
3140 3352 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3141 3353 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3142 3354 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3143 3355 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3144 3356 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3175 3387 7.026631 TGTTTCAAGTTTCAACTACCATGAG 57.973 36.000 0.00 0.00 38.57 2.90
3226 3438 4.463186 AGAACTACTGAATCCGCTAGTGTT 59.537 41.667 1.99 0.00 0.00 3.32
3229 3441 7.501559 AGAACTACTGAATCCGCTAGTGTTATA 59.498 37.037 1.99 0.00 0.00 0.98
3232 3444 9.293404 ACTACTGAATCCGCTAGTGTTATATTA 57.707 33.333 1.99 0.00 0.00 0.98
3322 3534 4.768130 TCTGAATATAGTACGCCTGCTC 57.232 45.455 0.00 0.00 0.00 4.26
3344 3556 2.224646 TGTAGCATGTGTTAGGTGCCAA 60.225 45.455 0.00 0.00 39.62 4.52
3383 3595 2.411904 CTTCTGCAGAGTGTCACCTTC 58.588 52.381 17.43 0.00 0.00 3.46
3468 3680 2.427095 AGGTTGACAAGTTTTCTGGTGC 59.573 45.455 0.00 0.00 33.62 5.01
3472 3684 5.221244 GGTTGACAAGTTTTCTGGTGCTATT 60.221 40.000 0.00 0.00 33.62 1.73
3520 3732 8.547967 TTGTGCTAGAACTTAATTGAGTAAGG 57.452 34.615 2.94 0.00 35.72 2.69
3525 3737 7.766738 GCTAGAACTTAATTGAGTAAGGCTTCT 59.233 37.037 1.30 4.56 35.72 2.85
3553 3765 4.949238 TGATGCTGTTATATGCACAAAGGT 59.051 37.500 0.00 0.00 42.26 3.50
3659 3875 5.997746 CCCAGAAGAAGATTTCAACTACACA 59.002 40.000 0.00 0.00 0.00 3.72
3681 3897 2.664081 CCTGACTGGCTCCTCCACC 61.664 68.421 0.00 0.00 40.72 4.61
3698 3914 2.615493 CCACCTGGTAAGTAAGTGCCTG 60.615 54.545 0.00 0.00 0.00 4.85
3702 3918 2.993899 CTGGTAAGTAAGTGCCTGTTCG 59.006 50.000 0.00 0.00 0.00 3.95
3756 3972 4.980805 GGAGTGGCACCGAACGCA 62.981 66.667 15.27 0.00 0.00 5.24
3764 3980 2.034879 CACCGAACGCATTGGCTCT 61.035 57.895 0.00 0.00 38.10 4.09
3765 3981 0.739462 CACCGAACGCATTGGCTCTA 60.739 55.000 0.00 0.00 38.10 2.43
3766 3982 0.178068 ACCGAACGCATTGGCTCTAT 59.822 50.000 0.00 0.00 38.10 1.98
3777 3993 1.550327 TGGCTCTATATGCTCTCCCG 58.450 55.000 0.00 0.00 0.00 5.14
3804 4020 3.971702 GGAGCAGCTTGTGGGGGT 61.972 66.667 0.00 0.00 0.00 4.95
3805 4021 2.674380 GAGCAGCTTGTGGGGGTG 60.674 66.667 0.00 0.00 35.58 4.61
3806 4022 3.497884 GAGCAGCTTGTGGGGGTGT 62.498 63.158 0.00 0.00 35.03 4.16
3807 4023 2.985847 GCAGCTTGTGGGGGTGTC 60.986 66.667 0.00 0.00 35.03 3.67
3808 4024 2.515398 CAGCTTGTGGGGGTGTCA 59.485 61.111 0.00 0.00 0.00 3.58
3809 4025 1.898574 CAGCTTGTGGGGGTGTCAC 60.899 63.158 0.00 0.00 35.82 3.67
3810 4026 2.597510 GCTTGTGGGGGTGTCACC 60.598 66.667 14.13 14.13 37.60 4.02
3811 4027 2.281484 CTTGTGGGGGTGTCACCG 60.281 66.667 15.93 0.00 39.83 4.94
3812 4028 2.768769 TTGTGGGGGTGTCACCGA 60.769 61.111 15.93 0.00 39.83 4.69
3813 4029 2.332312 CTTGTGGGGGTGTCACCGAA 62.332 60.000 15.93 0.90 39.83 4.30
3814 4030 2.281276 GTGGGGGTGTCACCGAAC 60.281 66.667 15.93 9.83 39.83 3.95
3815 4031 3.931247 TGGGGGTGTCACCGAACG 61.931 66.667 15.93 0.00 39.83 3.95
3817 4033 4.612412 GGGGTGTCACCGAACGCA 62.612 66.667 15.93 0.00 39.83 5.24
3818 4034 2.358247 GGGTGTCACCGAACGCAT 60.358 61.111 15.93 0.00 39.83 4.73
3819 4035 1.964373 GGGTGTCACCGAACGCATT 60.964 57.895 15.93 0.00 39.83 3.56
3820 4036 1.206578 GGTGTCACCGAACGCATTG 59.793 57.895 6.18 0.00 0.00 2.82
3821 4037 1.206578 GTGTCACCGAACGCATTGG 59.793 57.895 0.00 0.00 0.00 3.16
3822 4038 2.175811 GTCACCGAACGCATTGGC 59.824 61.111 0.00 0.00 0.00 4.52
3823 4039 2.031919 TCACCGAACGCATTGGCT 59.968 55.556 0.00 0.00 38.10 4.75
3824 4040 2.032634 TCACCGAACGCATTGGCTC 61.033 57.895 0.00 0.00 38.10 4.70
3825 4041 2.746277 ACCGAACGCATTGGCTCC 60.746 61.111 0.00 0.00 38.10 4.70
3826 4042 2.745884 CCGAACGCATTGGCTCCA 60.746 61.111 0.00 0.00 38.10 3.86
3827 4043 2.114670 CCGAACGCATTGGCTCCAT 61.115 57.895 0.00 0.00 38.10 3.41
3828 4044 1.063006 CGAACGCATTGGCTCCATG 59.937 57.895 0.00 0.00 38.10 3.66
3829 4045 1.226773 GAACGCATTGGCTCCATGC 60.227 57.895 10.99 10.99 41.94 4.06
3830 4046 1.660560 GAACGCATTGGCTCCATGCT 61.661 55.000 15.83 4.41 42.39 3.79
3831 4047 1.660560 AACGCATTGGCTCCATGCTC 61.661 55.000 15.83 0.00 42.39 4.26
3832 4048 1.822613 CGCATTGGCTCCATGCTCT 60.823 57.895 15.83 0.00 42.39 4.09
3833 4049 1.381928 CGCATTGGCTCCATGCTCTT 61.382 55.000 15.83 0.00 42.39 2.85
3834 4050 0.384669 GCATTGGCTCCATGCTCTTC 59.615 55.000 12.75 0.00 42.39 2.87
3835 4051 1.030457 CATTGGCTCCATGCTCTTCC 58.970 55.000 0.00 0.00 42.39 3.46
3836 4052 0.465097 ATTGGCTCCATGCTCTTCCG 60.465 55.000 0.00 0.00 42.39 4.30
3837 4053 2.203126 GGCTCCATGCTCTTCCGG 60.203 66.667 0.00 0.00 42.39 5.14
3838 4054 2.203126 GCTCCATGCTCTTCCGGG 60.203 66.667 0.00 0.00 38.95 5.73
3839 4055 2.507944 CTCCATGCTCTTCCGGGG 59.492 66.667 0.00 0.00 0.00 5.73
3840 4056 3.764160 CTCCATGCTCTTCCGGGGC 62.764 68.421 0.00 1.88 0.00 5.80
3862 4078 2.512515 CGGAGCAGCTTGTAGGGC 60.513 66.667 0.00 0.00 0.00 5.19
3863 4079 2.671070 GGAGCAGCTTGTAGGGCA 59.329 61.111 0.00 0.00 0.00 5.36
3864 4080 1.225704 GGAGCAGCTTGTAGGGCAT 59.774 57.895 0.00 0.00 0.00 4.40
3865 4081 0.394899 GGAGCAGCTTGTAGGGCATT 60.395 55.000 0.00 0.00 0.00 3.56
3866 4082 1.467920 GAGCAGCTTGTAGGGCATTT 58.532 50.000 0.00 0.00 0.00 2.32
3867 4083 1.821136 GAGCAGCTTGTAGGGCATTTT 59.179 47.619 0.00 0.00 0.00 1.82
3868 4084 2.232208 GAGCAGCTTGTAGGGCATTTTT 59.768 45.455 0.00 0.00 0.00 1.94
3888 4104 3.546002 TTCGGAGTTGTAAAATTGCCG 57.454 42.857 0.00 0.00 38.68 5.69
3889 4105 1.198178 TCGGAGTTGTAAAATTGCCGC 59.802 47.619 0.00 0.00 37.36 6.53
3890 4106 1.199097 CGGAGTTGTAAAATTGCCGCT 59.801 47.619 0.00 0.00 0.00 5.52
3891 4107 2.727916 CGGAGTTGTAAAATTGCCGCTC 60.728 50.000 0.00 0.00 0.00 5.03
3892 4108 2.415491 GGAGTTGTAAAATTGCCGCTCC 60.415 50.000 0.00 0.00 35.19 4.70
3893 4109 2.227865 GAGTTGTAAAATTGCCGCTCCA 59.772 45.455 0.00 0.00 0.00 3.86
3894 4110 2.030274 AGTTGTAAAATTGCCGCTCCAC 60.030 45.455 0.00 0.00 0.00 4.02
3895 4111 0.519519 TGTAAAATTGCCGCTCCACG 59.480 50.000 0.00 0.00 43.15 4.94
3896 4112 0.796870 GTAAAATTGCCGCTCCACGC 60.797 55.000 0.00 0.00 41.76 5.34
3897 4113 1.237954 TAAAATTGCCGCTCCACGCA 61.238 50.000 0.00 0.00 41.76 5.24
3898 4114 2.747507 AAAATTGCCGCTCCACGCAC 62.748 55.000 0.00 0.00 41.76 5.34
3899 4115 4.704833 ATTGCCGCTCCACGCACT 62.705 61.111 0.00 0.00 41.76 4.40
3906 4122 3.190849 CTCCACGCACTCCGCATG 61.191 66.667 0.00 0.00 42.60 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.814010 AGCACCACTTGTCGAACCAC 60.814 55.000 0.00 0.00 0.00 4.16
2 3 0.753867 TAGCACCACTTGTCGAACCA 59.246 50.000 0.00 0.00 0.00 3.67
3 4 1.429463 CTAGCACCACTTGTCGAACC 58.571 55.000 0.00 0.00 0.00 3.62
4 5 0.790814 GCTAGCACCACTTGTCGAAC 59.209 55.000 10.63 0.00 0.00 3.95
5 6 0.391228 TGCTAGCACCACTTGTCGAA 59.609 50.000 14.93 0.00 0.00 3.71
6 7 0.391228 TTGCTAGCACCACTTGTCGA 59.609 50.000 19.17 0.00 0.00 4.20
7 8 1.129251 CATTGCTAGCACCACTTGTCG 59.871 52.381 19.17 0.00 0.00 4.35
8 9 1.470098 CCATTGCTAGCACCACTTGTC 59.530 52.381 19.17 0.00 0.00 3.18
9 10 1.202927 ACCATTGCTAGCACCACTTGT 60.203 47.619 19.17 6.31 0.00 3.16
10 11 1.200716 CACCATTGCTAGCACCACTTG 59.799 52.381 19.17 10.00 0.00 3.16
11 12 1.538047 CACCATTGCTAGCACCACTT 58.462 50.000 19.17 0.00 0.00 3.16
12 13 0.322816 CCACCATTGCTAGCACCACT 60.323 55.000 19.17 0.00 0.00 4.00
13 14 0.609131 ACCACCATTGCTAGCACCAC 60.609 55.000 19.17 0.00 0.00 4.16
14 15 0.608856 CACCACCATTGCTAGCACCA 60.609 55.000 19.17 3.75 0.00 4.17
15 16 0.322456 TCACCACCATTGCTAGCACC 60.322 55.000 19.17 0.00 0.00 5.01
16 17 1.402968 CATCACCACCATTGCTAGCAC 59.597 52.381 19.17 0.00 0.00 4.40
17 18 1.281577 TCATCACCACCATTGCTAGCA 59.718 47.619 14.93 14.93 0.00 3.49
18 19 2.042686 TCATCACCACCATTGCTAGC 57.957 50.000 8.10 8.10 0.00 3.42
19 20 3.877559 TCTTCATCACCACCATTGCTAG 58.122 45.455 0.00 0.00 0.00 3.42
20 21 3.998913 TCTTCATCACCACCATTGCTA 57.001 42.857 0.00 0.00 0.00 3.49
21 22 2.885135 TCTTCATCACCACCATTGCT 57.115 45.000 0.00 0.00 0.00 3.91
22 23 4.082081 TGAAATCTTCATCACCACCATTGC 60.082 41.667 0.00 0.00 34.08 3.56
23 24 5.648178 TGAAATCTTCATCACCACCATTG 57.352 39.130 0.00 0.00 34.08 2.82
45 46 5.621193 TCAGCATCATCATCATCACAAGAT 58.379 37.500 0.00 0.00 33.87 2.40
46 47 5.031066 TCAGCATCATCATCATCACAAGA 57.969 39.130 0.00 0.00 0.00 3.02
47 48 5.470098 TCATCAGCATCATCATCATCACAAG 59.530 40.000 0.00 0.00 0.00 3.16
48 49 5.373222 TCATCAGCATCATCATCATCACAA 58.627 37.500 0.00 0.00 0.00 3.33
49 50 4.968259 TCATCAGCATCATCATCATCACA 58.032 39.130 0.00 0.00 0.00 3.58
50 51 5.643777 TCATCATCAGCATCATCATCATCAC 59.356 40.000 0.00 0.00 0.00 3.06
51 52 5.804639 TCATCATCAGCATCATCATCATCA 58.195 37.500 0.00 0.00 0.00 3.07
52 53 6.540189 TCATCATCATCAGCATCATCATCATC 59.460 38.462 0.00 0.00 0.00 2.92
53 54 6.418101 TCATCATCATCAGCATCATCATCAT 58.582 36.000 0.00 0.00 0.00 2.45
54 55 5.804639 TCATCATCATCAGCATCATCATCA 58.195 37.500 0.00 0.00 0.00 3.07
55 56 6.540189 TCATCATCATCATCAGCATCATCATC 59.460 38.462 0.00 0.00 0.00 2.92
56 57 6.418101 TCATCATCATCATCAGCATCATCAT 58.582 36.000 0.00 0.00 0.00 2.45
57 58 5.804639 TCATCATCATCATCAGCATCATCA 58.195 37.500 0.00 0.00 0.00 3.07
58 59 6.540189 TCATCATCATCATCATCAGCATCATC 59.460 38.462 0.00 0.00 0.00 2.92
59 60 6.418101 TCATCATCATCATCATCAGCATCAT 58.582 36.000 0.00 0.00 0.00 2.45
60 61 5.804639 TCATCATCATCATCATCAGCATCA 58.195 37.500 0.00 0.00 0.00 3.07
61 62 6.540189 TCATCATCATCATCATCATCAGCATC 59.460 38.462 0.00 0.00 0.00 3.91
62 63 6.418101 TCATCATCATCATCATCATCAGCAT 58.582 36.000 0.00 0.00 0.00 3.79
63 64 5.804639 TCATCATCATCATCATCATCAGCA 58.195 37.500 0.00 0.00 0.00 4.41
64 65 6.540189 TCATCATCATCATCATCATCATCAGC 59.460 38.462 0.00 0.00 0.00 4.26
65 66 8.557864 CATCATCATCATCATCATCATCATCAG 58.442 37.037 0.00 0.00 0.00 2.90
66 67 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
67 68 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
68 69 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
69 70 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
70 71 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
71 72 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
72 73 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
73 74 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
74 75 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
75 76 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
76 77 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
77 78 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
78 79 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
79 80 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
80 81 9.064706 CATCATCATCATCATCATCATCATCAT 57.935 33.333 0.00 0.00 0.00 2.45
81 82 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
82 83 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
83 84 9.118300 CTTCATCATCATCATCATCATCATCAT 57.882 33.333 0.00 0.00 0.00 2.45
84 85 8.103305 ACTTCATCATCATCATCATCATCATCA 58.897 33.333 0.00 0.00 0.00 3.07
85 86 8.394121 CACTTCATCATCATCATCATCATCATC 58.606 37.037 0.00 0.00 0.00 2.92
86 87 8.103305 TCACTTCATCATCATCATCATCATCAT 58.897 33.333 0.00 0.00 0.00 2.45
87 88 7.450074 TCACTTCATCATCATCATCATCATCA 58.550 34.615 0.00 0.00 0.00 3.07
88 89 7.907214 TCACTTCATCATCATCATCATCATC 57.093 36.000 0.00 0.00 0.00 2.92
89 90 8.103305 TCATCACTTCATCATCATCATCATCAT 58.897 33.333 0.00 0.00 0.00 2.45
144 145 6.878317 TGGTGTCATTTTAACATGGTTTTCA 58.122 32.000 0.00 0.00 0.00 2.69
149 150 6.760770 CAGTTTTGGTGTCATTTTAACATGGT 59.239 34.615 0.00 0.00 0.00 3.55
150 151 6.760770 ACAGTTTTGGTGTCATTTTAACATGG 59.239 34.615 0.00 0.00 0.00 3.66
151 152 7.277539 ACACAGTTTTGGTGTCATTTTAACATG 59.722 33.333 0.00 0.00 45.89 3.21
152 153 7.327214 ACACAGTTTTGGTGTCATTTTAACAT 58.673 30.769 0.00 0.00 45.89 2.71
153 154 6.692486 ACACAGTTTTGGTGTCATTTTAACA 58.308 32.000 0.00 0.00 45.89 2.41
198 199 5.520632 TGACCGCGATTTTGACAAATAAAA 58.479 33.333 8.23 0.00 32.35 1.52
206 207 1.259316 GCAATGACCGCGATTTTGAC 58.741 50.000 8.23 0.00 0.00 3.18
228 230 2.601266 CCTCAAACTGTAAAACCGCACG 60.601 50.000 0.00 0.00 0.00 5.34
232 234 1.268625 GCCCCTCAAACTGTAAAACCG 59.731 52.381 0.00 0.00 0.00 4.44
241 243 0.676782 CCGATTTCGCCCCTCAAACT 60.677 55.000 0.00 0.00 38.18 2.66
295 297 5.365619 GGTTGCGGAGGATATTCTCTTTTA 58.634 41.667 10.94 0.00 34.39 1.52
312 314 1.296056 AAGGGTCGAAATCGGTTGCG 61.296 55.000 1.12 1.12 40.29 4.85
349 351 1.072806 CCTTATAACCGGGGTAAGGGC 59.927 57.143 23.65 0.00 40.37 5.19
374 376 9.992442 CTATATCTAGTAGACCCCTTAAATCCA 57.008 37.037 0.85 0.00 0.00 3.41
430 432 4.047166 ACATATTCATCAACCCCTCCTCA 58.953 43.478 0.00 0.00 0.00 3.86
556 558 1.148273 CCCATCCACACCCATACCG 59.852 63.158 0.00 0.00 0.00 4.02
561 563 1.502527 GGTTACCCCATCCACACCCA 61.503 60.000 0.00 0.00 0.00 4.51
570 572 2.225242 TGCATTCACTTGGTTACCCCAT 60.225 45.455 0.00 0.00 44.74 4.00
581 583 1.016130 CGACCGCTCTGCATTCACTT 61.016 55.000 0.00 0.00 0.00 3.16
591 593 0.677098 TCTGCTTACTCGACCGCTCT 60.677 55.000 0.00 0.00 0.00 4.09
604 606 1.016130 CGCTCGGATGTTGTCTGCTT 61.016 55.000 0.00 0.00 32.95 3.91
606 608 2.456119 CCGCTCGGATGTTGTCTGC 61.456 63.158 1.35 0.00 37.50 4.26
632 634 6.038603 CACCAATAATCATTTCACTCGGATGT 59.961 38.462 0.00 0.00 0.00 3.06
938 986 1.080025 AGCCCACTAAGCGTCGTTC 60.080 57.895 0.00 0.00 34.64 3.95
1198 1265 3.441290 CTCTCGGGCGGACTCGTT 61.441 66.667 0.00 0.00 38.89 3.85
1212 1279 1.152440 CCGGGAGACTATGGCCTCT 60.152 63.158 3.32 0.00 0.00 3.69
1215 1282 2.446036 ACCCGGGAGACTATGGCC 60.446 66.667 32.02 0.00 0.00 5.36
1283 1350 3.003763 GGTCCAGGGAGGCGAACT 61.004 66.667 0.00 0.00 37.29 3.01
1357 1424 2.079158 CTGGATGTGCTTGTTGACGAT 58.921 47.619 0.00 0.00 0.00 3.73
1551 1618 1.884579 CTGGCAGCAATCAAACACTCT 59.115 47.619 0.00 0.00 0.00 3.24
1581 1648 1.600916 GGCGAGCACAAGGGTCTTT 60.601 57.895 0.00 0.00 41.89 2.52
1678 1751 2.461110 GCGTTTCCATCACGGCGAT 61.461 57.895 16.62 0.00 38.13 4.58
1753 1850 3.716872 CAGGTAATCTTGACCCCCATACT 59.283 47.826 0.00 0.00 37.73 2.12
1759 1856 1.004277 TGCACAGGTAATCTTGACCCC 59.996 52.381 0.00 0.00 37.73 4.95
1935 2036 2.032620 CACCTATCCTCTTGTACGCCT 58.967 52.381 0.00 0.00 0.00 5.52
2002 2107 2.252535 TGGTGGATGGATCTCAGTGA 57.747 50.000 0.00 0.00 0.00 3.41
2084 2189 8.672329 AGTTCTTGATGGATGGATGGAATAATA 58.328 33.333 0.00 0.00 0.00 0.98
2190 2297 3.403038 ACTGTTCTTGACGGATGGAAAG 58.597 45.455 0.00 0.00 38.07 2.62
2199 2306 7.812309 TCATACTGATTAACTGTTCTTGACG 57.188 36.000 0.00 0.00 33.04 4.35
2309 2416 5.005299 CGAAAACACCAAAATTCACCTTCAC 59.995 40.000 0.00 0.00 0.00 3.18
2432 2545 8.503196 TGCTAGTAATTGATTATAACATTGCCG 58.497 33.333 0.00 0.00 0.00 5.69
3004 3216 4.221703 AGTTGAAACATGGTCCAACACAAA 59.778 37.500 15.73 0.00 40.77 2.83
3032 3244 5.013079 TCCGAACGGAGGGAGTATATACTAA 59.987 44.000 15.42 0.00 39.76 2.24
3033 3245 4.532126 TCCGAACGGAGGGAGTATATACTA 59.468 45.833 15.42 0.00 39.76 1.82
3034 3246 3.328931 TCCGAACGGAGGGAGTATATACT 59.671 47.826 15.37 15.37 39.76 2.12
3035 3247 3.679389 TCCGAACGGAGGGAGTATATAC 58.321 50.000 12.04 4.60 39.76 1.47
3036 3248 4.371624 TTCCGAACGGAGGGAGTATATA 57.628 45.455 15.34 0.00 46.06 0.86
3037 3249 2.965671 TCCGAACGGAGGGAGTATAT 57.034 50.000 12.04 0.00 39.76 0.86
3038 3250 2.734755 TTCCGAACGGAGGGAGTATA 57.265 50.000 15.34 0.00 46.06 1.47
3039 3251 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
3040 3252 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
3041 3253 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
3042 3254 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3043 3255 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3044 3256 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3045 3257 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3046 3258 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
3047 3259 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
3048 3260 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
3049 3261 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
3050 3262 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
3051 3263 6.128391 CCATTTTCGAGACAAGTAATTCCGAA 60.128 38.462 0.00 0.00 33.57 4.30
3052 3264 5.350365 CCATTTTCGAGACAAGTAATTCCGA 59.650 40.000 0.00 0.00 0.00 4.55
3053 3265 5.350365 TCCATTTTCGAGACAAGTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
3054 3266 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
3055 3267 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
3056 3268 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
3057 3269 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
3058 3270 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
3059 3271 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
3060 3272 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
3061 3273 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
3062 3274 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
3063 3275 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
3064 3276 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
3065 3277 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
3066 3278 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
3095 3307 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
3096 3308 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
3097 3309 8.515414 TGTCGTAGAAATGGATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
3098 3310 8.637196 TGTCGTAGAAATGGATGTATCTAGAT 57.363 34.615 10.73 10.73 39.69 1.98
3099 3311 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
3100 3312 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
3101 3313 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
3102 3314 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
3103 3315 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
3104 3316 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
3105 3317 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
3106 3318 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
3107 3319 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
3108 3320 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
3109 3321 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
3110 3322 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
3111 3323 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
3112 3324 6.034256 CGTTCGGAATTACTTGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
3113 3325 5.343058 CGTTCGGAATTACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
3114 3326 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
3115 3327 4.406069 CGTTCGGAATTACTTGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
3116 3328 3.545078 CCGTTCGGAATTACTTGTCGTAG 59.455 47.826 5.19 0.00 0.00 3.51
3117 3329 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
3118 3330 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
3119 3331 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3120 3332 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3121 3333 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3122 3334 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3123 3335 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3124 3336 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3125 3337 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3126 3338 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3127 3339 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3128 3340 1.687123 CATACTCCCTCCGTTCGGAAT 59.313 52.381 14.79 2.14 33.41 3.01
3129 3341 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
3130 3342 0.033796 ACATACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
3131 3343 1.683943 TACATACTCCCTCCGTTCGG 58.316 55.000 4.74 4.74 0.00 4.30
3132 3344 2.621998 ACATACATACTCCCTCCGTTCG 59.378 50.000 0.00 0.00 0.00 3.95
3133 3345 4.667519 AACATACATACTCCCTCCGTTC 57.332 45.455 0.00 0.00 0.00 3.95
3134 3346 4.468510 TGAAACATACATACTCCCTCCGTT 59.531 41.667 0.00 0.00 0.00 4.44
3135 3347 4.028131 TGAAACATACATACTCCCTCCGT 58.972 43.478 0.00 0.00 0.00 4.69
3136 3348 4.665833 TGAAACATACATACTCCCTCCG 57.334 45.455 0.00 0.00 0.00 4.63
3137 3349 5.990668 ACTTGAAACATACATACTCCCTCC 58.009 41.667 0.00 0.00 0.00 4.30
3138 3350 7.606456 TGAAACTTGAAACATACATACTCCCTC 59.394 37.037 0.00 0.00 0.00 4.30
3139 3351 7.458397 TGAAACTTGAAACATACATACTCCCT 58.542 34.615 0.00 0.00 0.00 4.20
3140 3352 7.681939 TGAAACTTGAAACATACATACTCCC 57.318 36.000 0.00 0.00 0.00 4.30
3141 3353 8.784043 AGTTGAAACTTGAAACATACATACTCC 58.216 33.333 0.00 0.00 35.21 3.85
3144 3356 9.821662 GGTAGTTGAAACTTGAAACATACATAC 57.178 33.333 0.21 0.00 40.37 2.39
3226 3438 9.097257 CACCACGTTGCATATCATGATAATATA 57.903 33.333 19.03 0.00 0.00 0.86
3229 3441 5.764686 ACACCACGTTGCATATCATGATAAT 59.235 36.000 19.03 5.79 0.00 1.28
3232 3444 3.544684 ACACCACGTTGCATATCATGAT 58.455 40.909 13.81 13.81 0.00 2.45
3242 3454 6.598753 ATCACTAATAATACACCACGTTGC 57.401 37.500 0.00 0.00 0.00 4.17
3322 3534 2.009774 GGCACCTAACACATGCTACAG 58.990 52.381 0.00 0.00 39.38 2.74
3383 3595 7.636326 AGAGGTGTTTGTTAAATTAACTGACG 58.364 34.615 15.80 0.00 39.38 4.35
3502 3714 6.881602 CCAGAAGCCTTACTCAATTAAGTTCT 59.118 38.462 0.00 0.00 30.26 3.01
3508 3720 4.568072 TGCCAGAAGCCTTACTCAATTA 57.432 40.909 0.00 0.00 42.71 1.40
3520 3732 0.815734 AACAGCATCATGCCAGAAGC 59.184 50.000 5.84 0.00 46.52 3.86
3525 3737 3.253921 GTGCATATAACAGCATCATGCCA 59.746 43.478 5.84 0.00 46.52 4.92
3553 3765 1.106944 TCCGCGGCTCAGTCATATGA 61.107 55.000 23.51 0.00 0.00 2.15
3626 3842 2.370349 TCTTCTTCTGGGACTAGCTCG 58.630 52.381 0.00 0.00 0.00 5.03
3659 3875 1.305718 GAGGAGCCAGTCAGGTCCT 60.306 63.158 11.84 11.84 45.12 3.85
3681 3897 2.993899 CGAACAGGCACTTACTTACCAG 59.006 50.000 0.00 0.00 34.60 4.00
3725 3941 1.304547 ACTCCGCAGCTACTCCAGT 60.305 57.895 0.00 0.00 0.00 4.00
3756 3972 2.499289 CGGGAGAGCATATAGAGCCAAT 59.501 50.000 0.00 0.00 0.00 3.16
3782 3998 3.123620 CACAAGCTGCTCCGCTCC 61.124 66.667 1.00 0.00 39.86 4.70
3792 4008 2.515901 GTGACACCCCCACAAGCT 59.484 61.111 0.00 0.00 34.81 3.74
3802 4018 1.206578 CAATGCGTTCGGTGACACC 59.793 57.895 15.13 15.13 34.05 4.16
3803 4019 1.206578 CCAATGCGTTCGGTGACAC 59.793 57.895 0.00 0.00 0.00 3.67
3804 4020 2.612567 GCCAATGCGTTCGGTGACA 61.613 57.895 8.36 0.00 0.00 3.58
3805 4021 2.175811 GCCAATGCGTTCGGTGAC 59.824 61.111 8.36 0.00 0.00 3.67
3806 4022 2.031919 AGCCAATGCGTTCGGTGA 59.968 55.556 8.36 0.00 44.33 4.02
3807 4023 2.480555 GAGCCAATGCGTTCGGTG 59.519 61.111 0.00 0.00 44.33 4.94
3808 4024 2.746277 GGAGCCAATGCGTTCGGT 60.746 61.111 8.36 0.00 44.33 4.69
3809 4025 2.114670 ATGGAGCCAATGCGTTCGG 61.115 57.895 0.00 0.00 44.33 4.30
3810 4026 1.063006 CATGGAGCCAATGCGTTCG 59.937 57.895 0.00 0.00 44.33 3.95
3811 4027 1.226773 GCATGGAGCCAATGCGTTC 60.227 57.895 0.00 0.00 44.33 3.95
3812 4028 2.887360 GCATGGAGCCAATGCGTT 59.113 55.556 0.00 0.00 44.33 4.84
3821 4037 2.203126 CCCGGAAGAGCATGGAGC 60.203 66.667 0.73 0.00 46.19 4.70
3822 4038 2.507944 CCCCGGAAGAGCATGGAG 59.492 66.667 0.73 0.00 0.00 3.86
3823 4039 3.797353 GCCCCGGAAGAGCATGGA 61.797 66.667 0.73 0.00 0.00 3.41
3840 4056 3.356639 TACAAGCTGCTCCGCTCCG 62.357 63.158 1.00 0.00 39.86 4.63
3841 4057 1.520342 CTACAAGCTGCTCCGCTCC 60.520 63.158 1.00 0.00 39.86 4.70
3842 4058 1.520342 CCTACAAGCTGCTCCGCTC 60.520 63.158 1.00 0.00 39.86 5.03
3843 4059 2.581354 CCTACAAGCTGCTCCGCT 59.419 61.111 1.00 0.00 43.31 5.52
3844 4060 2.512515 CCCTACAAGCTGCTCCGC 60.513 66.667 1.00 0.00 0.00 5.54
3845 4061 2.512515 GCCCTACAAGCTGCTCCG 60.513 66.667 1.00 0.00 0.00 4.63
3846 4062 0.394899 AATGCCCTACAAGCTGCTCC 60.395 55.000 1.00 0.00 0.00 4.70
3847 4063 1.467920 AAATGCCCTACAAGCTGCTC 58.532 50.000 1.00 0.00 0.00 4.26
3848 4064 1.928868 AAAATGCCCTACAAGCTGCT 58.071 45.000 0.00 0.00 0.00 4.24
3849 4065 2.749280 AAAAATGCCCTACAAGCTGC 57.251 45.000 0.00 0.00 0.00 5.25
3865 4081 4.740695 CGGCAATTTTACAACTCCGAAAAA 59.259 37.500 0.00 0.00 37.79 1.94
3866 4082 4.291783 CGGCAATTTTACAACTCCGAAAA 58.708 39.130 0.00 0.00 37.79 2.29
3867 4083 3.854045 GCGGCAATTTTACAACTCCGAAA 60.854 43.478 0.00 0.00 37.79 3.46
3868 4084 2.350964 GCGGCAATTTTACAACTCCGAA 60.351 45.455 0.00 0.00 37.79 4.30
3869 4085 1.198178 GCGGCAATTTTACAACTCCGA 59.802 47.619 0.00 0.00 37.79 4.55
3870 4086 1.199097 AGCGGCAATTTTACAACTCCG 59.801 47.619 1.45 0.00 38.51 4.63
3871 4087 2.415491 GGAGCGGCAATTTTACAACTCC 60.415 50.000 1.45 0.00 36.04 3.85
3872 4088 2.227865 TGGAGCGGCAATTTTACAACTC 59.772 45.455 1.45 0.00 0.00 3.01
3873 4089 2.030274 GTGGAGCGGCAATTTTACAACT 60.030 45.455 1.45 0.00 0.00 3.16
3874 4090 2.324860 GTGGAGCGGCAATTTTACAAC 58.675 47.619 1.45 0.00 0.00 3.32
3875 4091 1.068885 CGTGGAGCGGCAATTTTACAA 60.069 47.619 1.45 0.00 36.85 2.41
3876 4092 0.519519 CGTGGAGCGGCAATTTTACA 59.480 50.000 1.45 0.00 36.85 2.41
3877 4093 0.796870 GCGTGGAGCGGCAATTTTAC 60.797 55.000 1.45 0.00 41.69 2.01
3878 4094 1.504446 GCGTGGAGCGGCAATTTTA 59.496 52.632 1.45 0.00 41.69 1.52
3879 4095 2.258286 GCGTGGAGCGGCAATTTT 59.742 55.556 1.45 0.00 41.69 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.