Multiple sequence alignment - TraesCS7B01G280300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G280300 chr7B 100.000 4017 0 0 1 4017 513302845 513306861 0.000000e+00 7419.0
1 TraesCS7B01G280300 chr7B 100.000 186 0 0 4358 4543 513307202 513307387 1.210000e-90 344.0
2 TraesCS7B01G280300 chr7B 94.000 50 2 1 699 747 709265389 709265340 1.750000e-09 75.0
3 TraesCS7B01G280300 chr7A 94.097 2575 99 27 1329 3881 553995836 553998379 0.000000e+00 3864.0
4 TraesCS7B01G280300 chr7A 88.128 657 28 20 500 1149 553995083 553995696 0.000000e+00 736.0
5 TraesCS7B01G280300 chr7A 86.898 519 38 12 1 491 553994499 553995015 5.130000e-154 555.0
6 TraesCS7B01G280300 chr7A 79.888 179 29 5 3838 4016 523193367 523193196 1.720000e-24 124.0
7 TraesCS7B01G280300 chr7D 95.640 2179 71 9 1856 4017 485541368 485543539 0.000000e+00 3476.0
8 TraesCS7B01G280300 chr7D 93.917 411 18 5 750 1154 485540422 485540831 8.350000e-172 614.0
9 TraesCS7B01G280300 chr7D 86.526 475 36 13 1354 1806 485540892 485541360 8.780000e-137 497.0
10 TraesCS7B01G280300 chr7D 87.097 186 23 1 4358 4543 413351322 413351138 4.610000e-50 209.0
11 TraesCS7B01G280300 chr7D 89.011 91 7 3 124 212 485538894 485538983 4.810000e-20 110.0
12 TraesCS7B01G280300 chr7D 93.750 48 3 0 3647 3694 485543309 485543356 6.300000e-09 73.1
13 TraesCS7B01G280300 chr2D 88.950 181 20 0 4363 4543 167698011 167697831 1.640000e-54 224.0
14 TraesCS7B01G280300 chrUn 88.398 181 21 0 4363 4543 53748467 53748287 7.650000e-53 219.0
15 TraesCS7B01G280300 chr4D 88.398 181 21 0 4363 4543 145211429 145211609 7.650000e-53 219.0
16 TraesCS7B01G280300 chr4D 97.619 42 1 0 706 747 207040954 207040913 6.300000e-09 73.1
17 TraesCS7B01G280300 chr1A 88.462 182 20 1 4363 4543 222403411 222403592 7.650000e-53 219.0
18 TraesCS7B01G280300 chr1A 80.508 118 15 5 2068 2181 427812942 427812829 2.910000e-12 84.2
19 TraesCS7B01G280300 chr1A 100.000 39 0 0 706 744 154072769 154072807 6.300000e-09 73.1
20 TraesCS7B01G280300 chr1D 88.701 177 19 1 4363 4538 238080684 238080860 9.900000e-52 215.0
21 TraesCS7B01G280300 chr1D 79.832 119 16 5 2068 2182 330544305 330544191 3.770000e-11 80.5
22 TraesCS7B01G280300 chr1D 97.619 42 1 0 706 747 10745994 10745953 6.300000e-09 73.1
23 TraesCS7B01G280300 chr1D 100.000 39 0 0 706 744 68409391 68409429 6.300000e-09 73.1
24 TraesCS7B01G280300 chr1D 100.000 39 0 0 706 744 254441131 254441169 6.300000e-09 73.1
25 TraesCS7B01G280300 chr1D 97.619 42 1 0 706 747 298346646 298346605 6.300000e-09 73.1
26 TraesCS7B01G280300 chr3D 87.845 181 22 0 4363 4543 558553535 558553355 3.560000e-51 213.0
27 TraesCS7B01G280300 chr6B 87.500 184 22 1 4360 4543 649816260 649816078 1.280000e-50 211.0
28 TraesCS7B01G280300 chr1B 87.778 180 21 1 4364 4543 152527126 152526948 4.610000e-50 209.0
29 TraesCS7B01G280300 chr1B 80.833 120 13 7 2068 2182 445428542 445428428 8.100000e-13 86.1
30 TraesCS7B01G280300 chr4A 87.234 94 8 3 3924 4016 686930039 686930129 2.240000e-18 104.0
31 TraesCS7B01G280300 chr4A 78.205 156 28 5 1572 1725 25021025 25021176 1.350000e-15 95.3
32 TraesCS7B01G280300 chr5D 97.619 42 1 0 706 747 6170819 6170778 6.300000e-09 73.1
33 TraesCS7B01G280300 chr5D 100.000 39 0 0 706 744 503297996 503298034 6.300000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G280300 chr7B 513302845 513307387 4542 False 3881.500000 7419 100.000000 1 4543 2 chr7B.!!$F1 4542
1 TraesCS7B01G280300 chr7A 553994499 553998379 3880 False 1718.333333 3864 89.707667 1 3881 3 chr7A.!!$F1 3880
2 TraesCS7B01G280300 chr7D 485538894 485543539 4645 False 954.020000 3476 91.768800 124 4017 5 chr7D.!!$F1 3893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 380 0.036388 GGCAGTTCCTCCGTGAATGA 60.036 55.000 0.00 0.00 0.00 2.57 F
1046 2142 0.179124 GAGCTCTCCATCGTGGTGAC 60.179 60.000 6.43 3.64 39.03 3.67 F
1530 2673 0.466922 CATGAGGGAGGACAATGGCC 60.467 60.000 0.00 0.00 0.00 5.36 F
2855 3998 1.062206 CTTCGGCTCCGTCTACGTC 59.938 63.158 8.28 0.00 40.74 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 2690 0.976641 CGCCTATGCCCTTGAGGATA 59.023 55.0 0.00 0.00 38.24 2.59 R
2855 3998 0.610687 ACAGCTTCTCGAAGGGGAAG 59.389 55.0 8.59 7.57 39.36 3.46 R
3254 4405 1.601419 GCTGCACGTAGTACCCTCCA 61.601 60.0 0.00 0.00 41.61 3.86 R
4381 5556 0.108019 AGGTCCTTGTTGGGTTCGAC 59.892 55.0 0.00 0.00 36.20 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 57 7.119846 GGTCATAAATGATCAGCCTATGGTAAC 59.880 40.741 15.91 10.08 37.84 2.50
59 61 4.322080 TGATCAGCCTATGGTAACGAAG 57.678 45.455 0.00 0.00 42.51 3.79
145 163 5.185635 TCCAGGCTAAGATTTCCATGTTTTG 59.814 40.000 0.00 0.00 0.00 2.44
147 165 3.859386 GGCTAAGATTTCCATGTTTTGCG 59.141 43.478 0.00 0.00 0.00 4.85
179 197 1.915141 ACAAGGAGCAAACATGAGGG 58.085 50.000 0.00 0.00 0.00 4.30
264 285 4.200874 CTCGTACTCCATGAGTTCCTACT 58.799 47.826 1.58 0.00 40.28 2.57
268 289 6.832384 TCGTACTCCATGAGTTCCTACTATTT 59.168 38.462 1.58 0.00 40.28 1.40
279 300 5.485708 AGTTCCTACTATTTGGAGACAAGCT 59.514 40.000 0.00 0.00 41.78 3.74
281 302 7.147811 AGTTCCTACTATTTGGAGACAAGCTAG 60.148 40.741 0.00 0.00 41.78 3.42
295 316 4.775236 ACAAGCTAGGAAAGATGGATGAC 58.225 43.478 0.00 0.00 0.00 3.06
297 318 3.663198 AGCTAGGAAAGATGGATGACCT 58.337 45.455 0.00 0.00 37.04 3.85
300 321 5.667626 AGCTAGGAAAGATGGATGACCTAAA 59.332 40.000 0.00 0.00 37.04 1.85
311 332 2.128771 TGACCTAAAGATTGGCTGGC 57.871 50.000 0.00 0.00 0.00 4.85
317 356 0.394352 AAAGATTGGCTGGCCCTACG 60.394 55.000 9.28 0.00 34.56 3.51
334 373 2.825836 GCCATGGCAGTTCCTCCG 60.826 66.667 32.08 0.00 41.49 4.63
335 374 2.671070 CCATGGCAGTTCCTCCGT 59.329 61.111 0.00 0.00 35.26 4.69
336 375 1.746615 CCATGGCAGTTCCTCCGTG 60.747 63.158 0.00 0.00 38.71 4.94
337 376 1.296392 CATGGCAGTTCCTCCGTGA 59.704 57.895 0.00 0.00 40.86 4.35
338 377 0.321564 CATGGCAGTTCCTCCGTGAA 60.322 55.000 0.00 0.00 40.86 3.18
339 378 0.620556 ATGGCAGTTCCTCCGTGAAT 59.379 50.000 0.00 0.00 35.26 2.57
340 379 0.321564 TGGCAGTTCCTCCGTGAATG 60.322 55.000 0.00 0.00 35.26 2.67
341 380 0.036388 GGCAGTTCCTCCGTGAATGA 60.036 55.000 0.00 0.00 0.00 2.57
342 381 1.363744 GCAGTTCCTCCGTGAATGAG 58.636 55.000 0.00 0.00 0.00 2.90
389 443 0.813184 AAATGCATCTTGAGCACGGG 59.187 50.000 0.00 0.00 45.95 5.28
424 479 4.065789 AGGAACTGATTTTCGTGGTCTTC 58.934 43.478 0.00 0.00 37.18 2.87
437 496 3.665190 GTGGTCTTCCAGTTTCCACTAG 58.335 50.000 0.00 0.00 45.24 2.57
486 550 2.106684 AGAAAACTGGAGTGACCTTCCC 59.893 50.000 0.00 0.00 39.86 3.97
491 555 1.004918 GGAGTGACCTTCCCGTGTG 60.005 63.158 0.00 0.00 35.41 3.82
493 557 0.608640 GAGTGACCTTCCCGTGTGAT 59.391 55.000 0.00 0.00 0.00 3.06
495 559 0.391263 GTGACCTTCCCGTGTGATCC 60.391 60.000 0.00 0.00 0.00 3.36
496 560 0.544357 TGACCTTCCCGTGTGATCCT 60.544 55.000 0.00 0.00 0.00 3.24
498 562 0.613777 ACCTTCCCGTGTGATCCTTC 59.386 55.000 0.00 0.00 0.00 3.46
511 634 2.571653 TGATCCTTCGGTGTGATCCTTT 59.428 45.455 0.00 0.00 35.18 3.11
541 664 5.184479 ACCACCTCAATTTTCATGTGAGATG 59.816 40.000 10.91 5.03 41.08 2.90
587 710 4.126437 TCTGCGAAAACTCTGTTCATTCA 58.874 39.130 0.00 0.00 0.00 2.57
602 725 7.068103 TCTGTTCATTCAAAGCCTTTGTTTCTA 59.932 33.333 16.33 0.00 41.36 2.10
603 726 6.978080 TGTTCATTCAAAGCCTTTGTTTCTAC 59.022 34.615 16.33 10.90 41.36 2.59
606 729 5.821516 TTCAAAGCCTTTGTTTCTACGAA 57.178 34.783 16.33 0.00 41.36 3.85
607 730 5.821516 TCAAAGCCTTTGTTTCTACGAAA 57.178 34.783 16.33 0.00 41.36 3.46
608 731 6.197364 TCAAAGCCTTTGTTTCTACGAAAA 57.803 33.333 16.33 0.00 41.36 2.29
609 732 6.031471 TCAAAGCCTTTGTTTCTACGAAAAC 58.969 36.000 16.33 0.00 41.36 2.43
610 733 5.830000 AAGCCTTTGTTTCTACGAAAACT 57.170 34.783 11.82 0.00 39.39 2.66
611 734 5.419760 AGCCTTTGTTTCTACGAAAACTC 57.580 39.130 11.82 0.00 39.39 3.01
612 735 5.123936 AGCCTTTGTTTCTACGAAAACTCT 58.876 37.500 11.82 2.79 39.39 3.24
613 736 5.007724 AGCCTTTGTTTCTACGAAAACTCTG 59.992 40.000 11.82 4.68 39.39 3.35
614 737 5.220796 GCCTTTGTTTCTACGAAAACTCTGT 60.221 40.000 11.82 0.00 39.39 3.41
615 738 6.677187 GCCTTTGTTTCTACGAAAACTCTGTT 60.677 38.462 11.82 0.00 39.39 3.16
616 739 6.905609 CCTTTGTTTCTACGAAAACTCTGTTC 59.094 38.462 11.82 0.00 39.39 3.18
617 740 6.971527 TTGTTTCTACGAAAACTCTGTTCA 57.028 33.333 11.82 0.00 39.39 3.18
618 741 7.548196 TTGTTTCTACGAAAACTCTGTTCAT 57.452 32.000 11.82 0.00 39.39 2.57
619 742 7.548196 TGTTTCTACGAAAACTCTGTTCATT 57.452 32.000 11.82 0.00 39.39 2.57
620 743 7.627340 TGTTTCTACGAAAACTCTGTTCATTC 58.373 34.615 11.82 0.00 39.39 2.67
621 744 6.780706 TTCTACGAAAACTCTGTTCATTCC 57.219 37.500 0.00 0.00 0.00 3.01
661 784 6.494842 TGACTATTGTTCTTTGTTTCACAGC 58.505 36.000 0.00 0.00 0.00 4.40
728 851 7.466746 TTCTTAAATGAAAGGATCTGGTTGG 57.533 36.000 0.00 0.00 0.00 3.77
730 853 7.237982 TCTTAAATGAAAGGATCTGGTTGGAA 58.762 34.615 0.00 0.00 0.00 3.53
731 854 7.895429 TCTTAAATGAAAGGATCTGGTTGGAAT 59.105 33.333 0.00 0.00 0.00 3.01
732 855 6.535963 AAATGAAAGGATCTGGTTGGAATC 57.464 37.500 0.00 0.00 0.00 2.52
734 857 5.261040 TGAAAGGATCTGGTTGGAATCTT 57.739 39.130 0.00 0.00 0.00 2.40
735 858 6.387192 TGAAAGGATCTGGTTGGAATCTTA 57.613 37.500 0.00 0.00 0.00 2.10
737 860 7.237982 TGAAAGGATCTGGTTGGAATCTTAAA 58.762 34.615 0.00 0.00 0.00 1.52
738 861 7.394359 TGAAAGGATCTGGTTGGAATCTTAAAG 59.606 37.037 0.00 0.00 0.00 1.85
739 862 6.394345 AGGATCTGGTTGGAATCTTAAAGT 57.606 37.500 0.00 0.00 0.00 2.66
741 864 5.946377 GGATCTGGTTGGAATCTTAAAGTGT 59.054 40.000 0.00 0.00 0.00 3.55
742 865 6.127897 GGATCTGGTTGGAATCTTAAAGTGTG 60.128 42.308 0.00 0.00 0.00 3.82
744 867 3.572255 TGGTTGGAATCTTAAAGTGTGGC 59.428 43.478 0.00 0.00 0.00 5.01
745 868 3.572255 GGTTGGAATCTTAAAGTGTGGCA 59.428 43.478 0.00 0.00 0.00 4.92
746 869 4.321230 GGTTGGAATCTTAAAGTGTGGCAG 60.321 45.833 0.00 0.00 0.00 4.85
747 870 4.098914 TGGAATCTTAAAGTGTGGCAGT 57.901 40.909 0.00 0.00 0.00 4.40
748 871 4.072131 TGGAATCTTAAAGTGTGGCAGTC 58.928 43.478 0.00 0.00 0.00 3.51
749 872 4.202461 TGGAATCTTAAAGTGTGGCAGTCT 60.202 41.667 0.00 0.00 0.00 3.24
751 874 5.938125 GGAATCTTAAAGTGTGGCAGTCTTA 59.062 40.000 4.85 0.00 0.00 2.10
762 1851 8.807948 AGTGTGGCAGTCTTAATAATGTAATT 57.192 30.769 0.00 0.00 41.28 1.40
935 2026 7.119387 TCACTCCTGTCATGAGATTTCTACTA 58.881 38.462 11.63 0.00 33.95 1.82
1045 2141 2.193532 GAGCTCTCCATCGTGGTGA 58.806 57.895 6.43 8.02 39.03 4.02
1046 2142 0.179124 GAGCTCTCCATCGTGGTGAC 60.179 60.000 6.43 3.64 39.03 3.67
1049 2145 1.229051 TCTCCATCGTGGTGACCCA 60.229 57.895 0.00 0.00 39.03 4.51
1135 2231 6.903534 TCTTCCTATATTCCTCAAGGTGTCTT 59.096 38.462 0.00 0.00 36.34 3.01
1141 2237 7.682787 ATATTCCTCAAGGTGTCTTATCAGT 57.317 36.000 0.00 0.00 36.34 3.41
1149 2245 4.929479 AGGTGTCTTATCAGTCAGTCTCT 58.071 43.478 0.00 0.00 0.00 3.10
1150 2246 4.704540 AGGTGTCTTATCAGTCAGTCTCTG 59.295 45.833 0.00 0.00 0.00 3.35
1151 2247 4.461081 GGTGTCTTATCAGTCAGTCTCTGT 59.539 45.833 0.00 0.00 34.86 3.41
1153 2249 6.451393 GTGTCTTATCAGTCAGTCTCTGTTT 58.549 40.000 0.00 0.00 34.86 2.83
1156 2252 7.014711 TGTCTTATCAGTCAGTCTCTGTTTTCT 59.985 37.037 0.00 0.00 34.86 2.52
1160 2256 5.043903 TCAGTCAGTCTCTGTTTTCTTTCG 58.956 41.667 0.00 0.00 34.86 3.46
1161 2257 4.210120 CAGTCAGTCTCTGTTTTCTTTCGG 59.790 45.833 0.00 0.00 32.61 4.30
1163 2259 4.025647 GTCAGTCTCTGTTTTCTTTCGGTG 60.026 45.833 0.00 0.00 32.61 4.94
1165 2261 4.332819 CAGTCTCTGTTTTCTTTCGGTGTT 59.667 41.667 0.00 0.00 0.00 3.32
1167 2263 4.331717 GTCTCTGTTTTCTTTCGGTGTTCA 59.668 41.667 0.00 0.00 0.00 3.18
1168 2264 4.331717 TCTCTGTTTTCTTTCGGTGTTCAC 59.668 41.667 0.00 0.00 0.00 3.18
1169 2265 4.258543 TCTGTTTTCTTTCGGTGTTCACT 58.741 39.130 2.98 0.00 0.00 3.41
1170 2266 5.421277 TCTGTTTTCTTTCGGTGTTCACTA 58.579 37.500 2.98 0.00 0.00 2.74
1171 2267 6.053005 TCTGTTTTCTTTCGGTGTTCACTAT 58.947 36.000 2.98 0.00 0.00 2.12
1173 2269 5.818336 TGTTTTCTTTCGGTGTTCACTATCA 59.182 36.000 2.98 0.00 0.00 2.15
1174 2270 6.018262 TGTTTTCTTTCGGTGTTCACTATCAG 60.018 38.462 2.98 0.00 0.00 2.90
1176 2272 5.970317 TCTTTCGGTGTTCACTATCAGTA 57.030 39.130 2.98 0.00 0.00 2.74
1192 2295 4.974645 TCAGTATTTGTGGGACAGAGTT 57.025 40.909 0.00 0.00 41.80 3.01
1194 2297 6.428083 TCAGTATTTGTGGGACAGAGTTTA 57.572 37.500 0.00 0.00 41.80 2.01
1200 2303 4.002906 TGTGGGACAGAGTTTACATCAC 57.997 45.455 0.00 0.00 41.80 3.06
1205 2329 5.112686 GGGACAGAGTTTACATCACAGATC 58.887 45.833 0.00 0.00 0.00 2.75
1232 2356 6.171213 ACTATTTTGGACGTTTTCTCCCTAG 58.829 40.000 0.00 0.00 0.00 3.02
1233 2357 4.693042 TTTTGGACGTTTTCTCCCTAGA 57.307 40.909 0.00 0.00 0.00 2.43
1235 2359 4.903045 TTGGACGTTTTCTCCCTAGAAT 57.097 40.909 0.00 0.00 41.36 2.40
1236 2360 4.202245 TGGACGTTTTCTCCCTAGAATG 57.798 45.455 0.00 0.00 41.36 2.67
1237 2361 3.055385 TGGACGTTTTCTCCCTAGAATGG 60.055 47.826 0.00 0.00 41.36 3.16
1238 2362 2.937149 GACGTTTTCTCCCTAGAATGGC 59.063 50.000 0.00 0.00 41.36 4.40
1239 2363 2.572104 ACGTTTTCTCCCTAGAATGGCT 59.428 45.455 0.00 0.00 41.36 4.75
1240 2364 3.773119 ACGTTTTCTCCCTAGAATGGCTA 59.227 43.478 0.00 0.00 41.36 3.93
1241 2365 4.141914 ACGTTTTCTCCCTAGAATGGCTAG 60.142 45.833 0.00 0.00 45.12 3.42
1244 2368 6.239345 CGTTTTCTCCCTAGAATGGCTAGTAT 60.239 42.308 0.00 0.00 44.24 2.12
1245 2369 7.510407 GTTTTCTCCCTAGAATGGCTAGTATT 58.490 38.462 0.00 0.00 44.24 1.89
1246 2370 6.919775 TTCTCCCTAGAATGGCTAGTATTC 57.080 41.667 11.60 11.60 44.24 1.75
1247 2371 5.334421 TCTCCCTAGAATGGCTAGTATTCC 58.666 45.833 14.40 0.00 44.24 3.01
1248 2372 5.087323 CTCCCTAGAATGGCTAGTATTCCA 58.913 45.833 14.40 4.25 44.24 3.53
1250 2374 4.841246 CCCTAGAATGGCTAGTATTCCAGT 59.159 45.833 14.40 3.21 44.24 4.00
1252 2376 6.497259 CCCTAGAATGGCTAGTATTCCAGTTA 59.503 42.308 14.40 4.49 44.24 2.24
1253 2377 7.016268 CCCTAGAATGGCTAGTATTCCAGTTAA 59.984 40.741 14.40 0.00 44.24 2.01
1254 2378 8.598041 CCTAGAATGGCTAGTATTCCAGTTAAT 58.402 37.037 14.40 2.54 44.24 1.40
1255 2379 9.429359 CTAGAATGGCTAGTATTCCAGTTAATG 57.571 37.037 14.40 0.00 41.42 1.90
1256 2380 8.034313 AGAATGGCTAGTATTCCAGTTAATGA 57.966 34.615 14.40 0.00 35.62 2.57
1257 2381 8.664079 AGAATGGCTAGTATTCCAGTTAATGAT 58.336 33.333 14.40 0.00 35.62 2.45
1259 2383 7.373617 TGGCTAGTATTCCAGTTAATGATCA 57.626 36.000 0.00 0.00 0.00 2.92
1260 2384 7.977818 TGGCTAGTATTCCAGTTAATGATCAT 58.022 34.615 1.18 1.18 0.00 2.45
1261 2385 7.879677 TGGCTAGTATTCCAGTTAATGATCATG 59.120 37.037 9.46 0.00 0.00 3.07
1262 2386 8.097038 GGCTAGTATTCCAGTTAATGATCATGA 58.903 37.037 9.46 0.00 0.00 3.07
1263 2387 9.664332 GCTAGTATTCCAGTTAATGATCATGAT 57.336 33.333 8.25 8.25 0.00 2.45
1266 2390 9.941325 AGTATTCCAGTTAATGATCATGATCTC 57.059 33.333 30.65 12.67 38.60 2.75
1267 2391 9.941325 GTATTCCAGTTAATGATCATGATCTCT 57.059 33.333 30.65 21.21 38.60 3.10
1270 2394 8.718158 TCCAGTTAATGATCATGATCTCTAGT 57.282 34.615 30.65 16.13 38.60 2.57
1271 2395 8.801299 TCCAGTTAATGATCATGATCTCTAGTC 58.199 37.037 30.65 18.23 38.60 2.59
1272 2396 8.583296 CCAGTTAATGATCATGATCTCTAGTCA 58.417 37.037 30.65 14.98 38.60 3.41
1273 2397 9.978044 CAGTTAATGATCATGATCTCTAGTCAA 57.022 33.333 30.65 12.78 38.60 3.18
1299 2423 8.504812 AAAATTTGTTGCTGTTTTGGTAATCT 57.495 26.923 0.00 0.00 0.00 2.40
1300 2424 9.606631 AAAATTTGTTGCTGTTTTGGTAATCTA 57.393 25.926 0.00 0.00 0.00 1.98
1301 2425 9.777297 AAATTTGTTGCTGTTTTGGTAATCTAT 57.223 25.926 0.00 0.00 0.00 1.98
1302 2426 8.761575 ATTTGTTGCTGTTTTGGTAATCTATG 57.238 30.769 0.00 0.00 0.00 2.23
1303 2427 6.266168 TGTTGCTGTTTTGGTAATCTATGG 57.734 37.500 0.00 0.00 0.00 2.74
1304 2428 5.772672 TGTTGCTGTTTTGGTAATCTATGGT 59.227 36.000 0.00 0.00 0.00 3.55
1305 2429 6.266558 TGTTGCTGTTTTGGTAATCTATGGTT 59.733 34.615 0.00 0.00 0.00 3.67
1306 2430 6.509418 TGCTGTTTTGGTAATCTATGGTTC 57.491 37.500 0.00 0.00 0.00 3.62
1307 2431 5.417580 TGCTGTTTTGGTAATCTATGGTTCC 59.582 40.000 0.00 0.00 0.00 3.62
1308 2432 5.652452 GCTGTTTTGGTAATCTATGGTTCCT 59.348 40.000 0.00 0.00 0.00 3.36
1309 2433 6.404734 GCTGTTTTGGTAATCTATGGTTCCTG 60.405 42.308 0.00 0.00 0.00 3.86
1310 2434 5.417580 TGTTTTGGTAATCTATGGTTCCTGC 59.582 40.000 0.00 0.00 0.00 4.85
1311 2435 5.450818 TTTGGTAATCTATGGTTCCTGCT 57.549 39.130 0.00 0.00 0.00 4.24
1312 2436 4.422073 TGGTAATCTATGGTTCCTGCTG 57.578 45.455 0.00 0.00 0.00 4.41
1313 2437 3.136443 TGGTAATCTATGGTTCCTGCTGG 59.864 47.826 2.58 2.58 0.00 4.85
1314 2438 3.496870 GGTAATCTATGGTTCCTGCTGGG 60.497 52.174 10.07 0.00 0.00 4.45
1315 2439 2.196742 ATCTATGGTTCCTGCTGGGA 57.803 50.000 10.07 0.00 43.41 4.37
1316 2440 2.196742 TCTATGGTTCCTGCTGGGAT 57.803 50.000 10.07 0.42 44.66 3.85
1317 2441 3.344535 TCTATGGTTCCTGCTGGGATA 57.655 47.619 10.07 0.00 44.66 2.59
1318 2442 3.664320 TCTATGGTTCCTGCTGGGATAA 58.336 45.455 10.07 0.00 44.66 1.75
1319 2443 4.242811 TCTATGGTTCCTGCTGGGATAAT 58.757 43.478 10.07 1.97 44.66 1.28
1320 2444 3.979501 ATGGTTCCTGCTGGGATAATT 57.020 42.857 10.07 0.00 44.66 1.40
1321 2445 5.849475 TCTATGGTTCCTGCTGGGATAATTA 59.151 40.000 10.07 0.00 44.66 1.40
1322 2446 4.871871 TGGTTCCTGCTGGGATAATTAA 57.128 40.909 10.07 0.00 44.66 1.40
1323 2447 4.532834 TGGTTCCTGCTGGGATAATTAAC 58.467 43.478 10.07 4.84 44.66 2.01
1324 2448 4.017958 TGGTTCCTGCTGGGATAATTAACA 60.018 41.667 10.07 0.00 44.66 2.41
1325 2449 4.580580 GGTTCCTGCTGGGATAATTAACAG 59.419 45.833 10.07 9.56 44.66 3.16
1326 2450 4.437682 TCCTGCTGGGATAATTAACAGG 57.562 45.455 10.07 0.00 43.65 4.00
1327 2451 3.785887 TCCTGCTGGGATAATTAACAGGT 59.214 43.478 10.07 0.00 42.98 4.00
1347 2471 4.018779 AGGTTGCTAGCTAATTACCACCAA 60.019 41.667 17.23 0.00 0.00 3.67
1349 2473 3.541632 TGCTAGCTAATTACCACCAAGC 58.458 45.455 17.23 0.00 0.00 4.01
1371 2495 5.532406 AGCAGCAGTAGAAGAAACATTTTCA 59.468 36.000 0.00 0.00 0.00 2.69
1378 2502 6.767902 AGTAGAAGAAACATTTTCACTCTGCA 59.232 34.615 15.01 0.00 0.00 4.41
1382 2506 6.152932 AGAAACATTTTCACTCTGCACAAT 57.847 33.333 1.72 0.00 0.00 2.71
1387 2511 5.981315 ACATTTTCACTCTGCACAATTTCTG 59.019 36.000 0.00 0.00 0.00 3.02
1402 2529 7.807433 GCACAATTTCTGTTATGACATGTAACA 59.193 33.333 11.24 11.24 39.12 2.41
1467 2610 3.580731 GAGTACAAGGTGAAGCTGAGTC 58.419 50.000 0.00 0.00 0.00 3.36
1472 2615 1.140312 AGGTGAAGCTGAGTCCCAAA 58.860 50.000 0.00 0.00 0.00 3.28
1505 2648 0.538057 CTGCAAAGGTGGCCTTCTCA 60.538 55.000 3.32 2.23 43.92 3.27
1530 2673 0.466922 CATGAGGGAGGACAATGGCC 60.467 60.000 0.00 0.00 0.00 5.36
1562 2705 4.144297 GCAAACATATCCTCAAGGGCATA 58.856 43.478 0.00 0.00 35.41 3.14
1589 2732 3.834799 GTCGACCCCGGCGAGATT 61.835 66.667 9.30 0.00 38.59 2.40
1643 2786 1.556911 ACCACCCTGCTCAAGATACTG 59.443 52.381 0.00 0.00 0.00 2.74
1778 2921 5.122396 ACTGAATTCTTGCGATTCCTTGTAC 59.878 40.000 7.05 0.00 0.00 2.90
1799 2942 5.152623 ACAACAATGGAGAAGATCGAGAA 57.847 39.130 0.00 0.00 0.00 2.87
1826 2969 9.771915 GATTGAGTGAAAAAGATTGAGAAGATC 57.228 33.333 0.00 0.00 0.00 2.75
1865 3008 5.854338 TCAAACTCTGTTGTTTTTGTTCGTC 59.146 36.000 0.00 0.00 37.98 4.20
1946 3089 3.112709 GAGACGCTGGTGTTCGCC 61.113 66.667 0.00 0.00 0.00 5.54
2031 3174 3.700109 CGGAGCTGAACCTGGAGA 58.300 61.111 0.00 0.00 0.00 3.71
2411 3554 1.079543 CGAGTTCCTGCTGGACCTG 60.080 63.158 14.55 3.74 43.06 4.00
2657 3800 4.578898 TTCGTGGTGCTGTCGCGT 62.579 61.111 5.77 0.00 39.65 6.01
2792 3935 2.985456 CAGCTGAGGGACCAGGTC 59.015 66.667 8.42 11.70 42.33 3.85
2855 3998 1.062206 CTTCGGCTCCGTCTACGTC 59.938 63.158 8.28 0.00 40.74 4.34
3146 4292 2.658707 GGCGAACGGCGATGATAGC 61.659 63.158 16.62 9.84 44.92 2.97
3254 4405 0.689055 TGATGCTGTTCCTGCTCACT 59.311 50.000 0.00 0.00 0.00 3.41
3562 4731 0.182775 AAAGAGGGAGTTTGGCACGT 59.817 50.000 0.00 0.00 0.00 4.49
3608 4781 5.584649 TCCGAATTATCCTTTGTCACATGTC 59.415 40.000 0.00 0.00 0.00 3.06
3632 4805 8.194104 GTCATGCATGTTTATTAATGGGTACAA 58.806 33.333 25.43 0.00 0.00 2.41
3728 4901 2.019984 GGTAATGAGGCCTTGCTGAAG 58.980 52.381 6.77 0.00 0.00 3.02
3736 4909 3.058160 CTTGCTGAAGGCGGTGGG 61.058 66.667 0.00 0.00 45.43 4.61
3752 4925 3.365265 GGCCAAGCTGTCCCAACG 61.365 66.667 0.00 0.00 0.00 4.10
3753 4926 2.594592 GCCAAGCTGTCCCAACGT 60.595 61.111 0.00 0.00 0.00 3.99
3822 4997 6.260714 GCATGGATTTTCTTCTTGTTGGTTTT 59.739 34.615 0.00 0.00 0.00 2.43
3860 5035 8.318412 TCAGTTTTGCTATTTCTCATGTACCTA 58.682 33.333 0.00 0.00 0.00 3.08
3862 5037 9.686683 AGTTTTGCTATTTCTCATGTACCTAAT 57.313 29.630 0.00 0.00 0.00 1.73
3893 5068 2.234300 TCACGTCAACCACCTTCTTC 57.766 50.000 0.00 0.00 0.00 2.87
3903 5078 1.004862 CCACCTTCTTCCTTCCTTCCC 59.995 57.143 0.00 0.00 0.00 3.97
3904 5079 1.004862 CACCTTCTTCCTTCCTTCCCC 59.995 57.143 0.00 0.00 0.00 4.81
3906 5081 1.675007 CTTCTTCCTTCCTTCCCCCT 58.325 55.000 0.00 0.00 0.00 4.79
3907 5082 1.996291 CTTCTTCCTTCCTTCCCCCTT 59.004 52.381 0.00 0.00 0.00 3.95
3908 5083 1.670059 TCTTCCTTCCTTCCCCCTTC 58.330 55.000 0.00 0.00 0.00 3.46
3909 5084 1.132201 TCTTCCTTCCTTCCCCCTTCA 60.132 52.381 0.00 0.00 0.00 3.02
3912 5087 1.489560 CCTTCCTTCCCCCTTCACGT 61.490 60.000 0.00 0.00 0.00 4.49
3913 5088 0.036294 CTTCCTTCCCCCTTCACGTC 60.036 60.000 0.00 0.00 0.00 4.34
3914 5089 1.486145 TTCCTTCCCCCTTCACGTCC 61.486 60.000 0.00 0.00 0.00 4.79
3915 5090 2.221299 CCTTCCCCCTTCACGTCCA 61.221 63.158 0.00 0.00 0.00 4.02
3916 5091 1.758592 CTTCCCCCTTCACGTCCAA 59.241 57.895 0.00 0.00 0.00 3.53
3918 5093 2.033602 CCCCCTTCACGTCCAACC 59.966 66.667 0.00 0.00 0.00 3.77
3919 5094 2.526046 CCCCCTTCACGTCCAACCT 61.526 63.158 0.00 0.00 0.00 3.50
3920 5095 1.003718 CCCCTTCACGTCCAACCTC 60.004 63.158 0.00 0.00 0.00 3.85
3921 5096 1.374252 CCCTTCACGTCCAACCTCG 60.374 63.158 0.00 0.00 0.00 4.63
3922 5097 1.366366 CCTTCACGTCCAACCTCGT 59.634 57.895 0.00 0.00 40.99 4.18
4003 5178 1.241485 TAGGAGGAGCTATGACCCCA 58.759 55.000 0.00 0.00 0.00 4.96
4010 5185 5.273208 GAGGAGCTATGACCCCATTATCTA 58.727 45.833 0.00 0.00 34.31 1.98
4011 5186 5.859429 AGGAGCTATGACCCCATTATCTAT 58.141 41.667 0.00 0.00 34.31 1.98
4012 5187 5.902431 AGGAGCTATGACCCCATTATCTATC 59.098 44.000 0.00 0.00 34.31 2.08
4013 5188 5.902431 GGAGCTATGACCCCATTATCTATCT 59.098 44.000 0.00 0.00 34.31 1.98
4016 5191 7.628234 AGCTATGACCCCATTATCTATCTTTG 58.372 38.462 0.00 0.00 34.31 2.77
4384 5559 5.675778 TTTTTCGATAAGTAAGAGCGTCG 57.324 39.130 0.00 0.00 0.00 5.12
4385 5560 4.604843 TTTCGATAAGTAAGAGCGTCGA 57.395 40.909 0.00 0.00 36.46 4.20
4386 5561 4.604843 TTCGATAAGTAAGAGCGTCGAA 57.395 40.909 0.00 4.17 43.24 3.71
4387 5562 3.933031 TCGATAAGTAAGAGCGTCGAAC 58.067 45.455 0.00 0.00 35.48 3.95
4388 5563 3.034562 CGATAAGTAAGAGCGTCGAACC 58.965 50.000 0.00 0.00 0.00 3.62
4389 5564 2.927553 TAAGTAAGAGCGTCGAACCC 57.072 50.000 0.00 0.00 0.00 4.11
4390 5565 0.963962 AAGTAAGAGCGTCGAACCCA 59.036 50.000 0.00 0.00 0.00 4.51
4391 5566 0.963962 AGTAAGAGCGTCGAACCCAA 59.036 50.000 0.00 0.00 0.00 4.12
4392 5567 1.066136 GTAAGAGCGTCGAACCCAAC 58.934 55.000 0.00 0.00 0.00 3.77
4393 5568 0.675083 TAAGAGCGTCGAACCCAACA 59.325 50.000 0.00 0.00 0.00 3.33
4394 5569 0.179067 AAGAGCGTCGAACCCAACAA 60.179 50.000 0.00 0.00 0.00 2.83
4395 5570 0.600255 AGAGCGTCGAACCCAACAAG 60.600 55.000 0.00 0.00 0.00 3.16
4396 5571 1.566018 GAGCGTCGAACCCAACAAGG 61.566 60.000 0.00 0.00 37.03 3.61
4397 5572 1.595929 GCGTCGAACCCAACAAGGA 60.596 57.895 0.00 0.00 41.22 3.36
4398 5573 1.838568 GCGTCGAACCCAACAAGGAC 61.839 60.000 0.00 0.00 41.22 3.85
4399 5574 1.226030 CGTCGAACCCAACAAGGACC 61.226 60.000 0.00 0.00 41.22 4.46
4400 5575 0.108019 GTCGAACCCAACAAGGACCT 59.892 55.000 0.00 0.00 41.22 3.85
4401 5576 1.345415 GTCGAACCCAACAAGGACCTA 59.655 52.381 0.00 0.00 41.22 3.08
4402 5577 2.048601 TCGAACCCAACAAGGACCTAA 58.951 47.619 0.00 0.00 41.22 2.69
4403 5578 2.438763 TCGAACCCAACAAGGACCTAAA 59.561 45.455 0.00 0.00 41.22 1.85
4404 5579 2.812011 CGAACCCAACAAGGACCTAAAG 59.188 50.000 0.00 0.00 41.22 1.85
4405 5580 3.495453 CGAACCCAACAAGGACCTAAAGA 60.495 47.826 0.00 0.00 41.22 2.52
4406 5581 4.663334 GAACCCAACAAGGACCTAAAGAT 58.337 43.478 0.00 0.00 41.22 2.40
4407 5582 5.570034 CGAACCCAACAAGGACCTAAAGATA 60.570 44.000 0.00 0.00 41.22 1.98
4408 5583 5.175388 ACCCAACAAGGACCTAAAGATAC 57.825 43.478 0.00 0.00 41.22 2.24
4409 5584 4.600111 ACCCAACAAGGACCTAAAGATACA 59.400 41.667 0.00 0.00 41.22 2.29
4410 5585 5.073965 ACCCAACAAGGACCTAAAGATACAA 59.926 40.000 0.00 0.00 41.22 2.41
4411 5586 6.187682 CCCAACAAGGACCTAAAGATACAAT 58.812 40.000 0.00 0.00 41.22 2.71
4412 5587 6.663523 CCCAACAAGGACCTAAAGATACAATT 59.336 38.462 0.00 0.00 41.22 2.32
4413 5588 7.832187 CCCAACAAGGACCTAAAGATACAATTA 59.168 37.037 0.00 0.00 41.22 1.40
4414 5589 9.238368 CCAACAAGGACCTAAAGATACAATTAA 57.762 33.333 0.00 0.00 41.22 1.40
4439 5614 9.968870 AATATTCTCTTAAGTTCTATCGACCAC 57.031 33.333 1.63 0.00 0.00 4.16
4440 5615 5.831702 TCTCTTAAGTTCTATCGACCACC 57.168 43.478 1.63 0.00 0.00 4.61
4441 5616 4.334759 TCTCTTAAGTTCTATCGACCACCG 59.665 45.833 1.63 0.00 40.25 4.94
4449 5624 3.056458 TCGACCACCGATGCAACT 58.944 55.556 0.00 0.00 43.23 3.16
4450 5625 1.369692 TCGACCACCGATGCAACTT 59.630 52.632 0.00 0.00 43.23 2.66
4451 5626 0.250124 TCGACCACCGATGCAACTTT 60.250 50.000 0.00 0.00 43.23 2.66
4452 5627 1.001068 TCGACCACCGATGCAACTTTA 59.999 47.619 0.00 0.00 43.23 1.85
4453 5628 1.127951 CGACCACCGATGCAACTTTAC 59.872 52.381 0.00 0.00 41.76 2.01
4454 5629 1.127951 GACCACCGATGCAACTTTACG 59.872 52.381 0.00 0.00 0.00 3.18
4455 5630 0.179200 CCACCGATGCAACTTTACGC 60.179 55.000 0.00 0.00 0.00 4.42
4456 5631 0.515127 CACCGATGCAACTTTACGCA 59.485 50.000 0.00 0.00 43.45 5.24
4457 5632 0.515564 ACCGATGCAACTTTACGCAC 59.484 50.000 0.00 0.00 41.79 5.34
4458 5633 0.515127 CCGATGCAACTTTACGCACA 59.485 50.000 0.00 0.00 41.79 4.57
4459 5634 1.130373 CCGATGCAACTTTACGCACAT 59.870 47.619 0.00 0.00 41.79 3.21
4460 5635 2.430956 CGATGCAACTTTACGCACATC 58.569 47.619 0.00 0.00 41.79 3.06
4461 5636 2.159720 CGATGCAACTTTACGCACATCA 60.160 45.455 0.00 0.00 41.79 3.07
4462 5637 3.666638 CGATGCAACTTTACGCACATCAA 60.667 43.478 0.00 0.00 41.79 2.57
4463 5638 2.993545 TGCAACTTTACGCACATCAAC 58.006 42.857 0.00 0.00 31.95 3.18
4464 5639 2.356069 TGCAACTTTACGCACATCAACA 59.644 40.909 0.00 0.00 31.95 3.33
4465 5640 3.004210 TGCAACTTTACGCACATCAACAT 59.996 39.130 0.00 0.00 31.95 2.71
4466 5641 3.980775 GCAACTTTACGCACATCAACATT 59.019 39.130 0.00 0.00 0.00 2.71
4467 5642 4.088496 GCAACTTTACGCACATCAACATTC 59.912 41.667 0.00 0.00 0.00 2.67
4468 5643 4.065423 ACTTTACGCACATCAACATTCG 57.935 40.909 0.00 0.00 0.00 3.34
4469 5644 2.519002 TTACGCACATCAACATTCGC 57.481 45.000 0.00 0.00 0.00 4.70
4470 5645 1.720805 TACGCACATCAACATTCGCT 58.279 45.000 0.00 0.00 0.00 4.93
4471 5646 0.874390 ACGCACATCAACATTCGCTT 59.126 45.000 0.00 0.00 0.00 4.68
4472 5647 1.266718 ACGCACATCAACATTCGCTTT 59.733 42.857 0.00 0.00 0.00 3.51
4473 5648 1.645265 CGCACATCAACATTCGCTTTG 59.355 47.619 0.00 0.00 0.00 2.77
4474 5649 1.387756 GCACATCAACATTCGCTTTGC 59.612 47.619 0.00 0.00 0.00 3.68
4475 5650 2.663808 CACATCAACATTCGCTTTGCA 58.336 42.857 0.00 0.00 0.00 4.08
4476 5651 3.247442 CACATCAACATTCGCTTTGCAT 58.753 40.909 0.00 0.00 0.00 3.96
4477 5652 3.676172 CACATCAACATTCGCTTTGCATT 59.324 39.130 0.00 0.00 0.00 3.56
4478 5653 3.676172 ACATCAACATTCGCTTTGCATTG 59.324 39.130 0.00 0.00 0.00 2.82
4479 5654 3.639716 TCAACATTCGCTTTGCATTGA 57.360 38.095 0.00 0.00 0.00 2.57
4480 5655 3.974912 TCAACATTCGCTTTGCATTGAA 58.025 36.364 0.00 0.00 0.00 2.69
4481 5656 4.366586 TCAACATTCGCTTTGCATTGAAA 58.633 34.783 0.00 0.00 0.00 2.69
4482 5657 4.989797 TCAACATTCGCTTTGCATTGAAAT 59.010 33.333 0.00 0.00 0.00 2.17
4483 5658 6.155136 TCAACATTCGCTTTGCATTGAAATA 58.845 32.000 0.00 0.00 0.00 1.40
4484 5659 6.644181 TCAACATTCGCTTTGCATTGAAATAA 59.356 30.769 0.00 0.00 0.00 1.40
4485 5660 6.636666 ACATTCGCTTTGCATTGAAATAAG 57.363 33.333 0.00 0.00 0.00 1.73
4486 5661 6.158598 ACATTCGCTTTGCATTGAAATAAGT 58.841 32.000 0.00 0.00 0.00 2.24
4487 5662 7.312154 ACATTCGCTTTGCATTGAAATAAGTA 58.688 30.769 0.00 0.00 0.00 2.24
4488 5663 7.812191 ACATTCGCTTTGCATTGAAATAAGTAA 59.188 29.630 0.00 0.00 0.00 2.24
4489 5664 8.810427 CATTCGCTTTGCATTGAAATAAGTAAT 58.190 29.630 0.00 0.00 0.00 1.89
4491 5666 9.847706 TTCGCTTTGCATTGAAATAAGTAATAA 57.152 25.926 0.00 0.00 0.00 1.40
4492 5667 9.847706 TCGCTTTGCATTGAAATAAGTAATAAA 57.152 25.926 0.00 0.00 0.00 1.40
4518 5693 9.924650 AATTAGAAGTACTTTGTAGGTGTAGTG 57.075 33.333 10.02 0.00 0.00 2.74
4519 5694 6.342338 AGAAGTACTTTGTAGGTGTAGTGG 57.658 41.667 10.02 0.00 0.00 4.00
4520 5695 5.245526 AGAAGTACTTTGTAGGTGTAGTGGG 59.754 44.000 10.02 0.00 0.00 4.61
4521 5696 4.744237 AGTACTTTGTAGGTGTAGTGGGA 58.256 43.478 0.00 0.00 0.00 4.37
4522 5697 5.339477 AGTACTTTGTAGGTGTAGTGGGAT 58.661 41.667 0.00 0.00 0.00 3.85
4523 5698 6.496743 AGTACTTTGTAGGTGTAGTGGGATA 58.503 40.000 0.00 0.00 0.00 2.59
4524 5699 6.955851 AGTACTTTGTAGGTGTAGTGGGATAA 59.044 38.462 0.00 0.00 0.00 1.75
4525 5700 6.295719 ACTTTGTAGGTGTAGTGGGATAAG 57.704 41.667 0.00 0.00 0.00 1.73
4526 5701 5.783875 ACTTTGTAGGTGTAGTGGGATAAGT 59.216 40.000 0.00 0.00 0.00 2.24
4527 5702 6.271624 ACTTTGTAGGTGTAGTGGGATAAGTT 59.728 38.462 0.00 0.00 0.00 2.66
4528 5703 6.691255 TTGTAGGTGTAGTGGGATAAGTTT 57.309 37.500 0.00 0.00 0.00 2.66
4529 5704 6.045072 TGTAGGTGTAGTGGGATAAGTTTG 57.955 41.667 0.00 0.00 0.00 2.93
4530 5705 3.951663 AGGTGTAGTGGGATAAGTTTGC 58.048 45.455 0.00 0.00 0.00 3.68
4531 5706 3.329520 AGGTGTAGTGGGATAAGTTTGCA 59.670 43.478 0.00 0.00 0.00 4.08
4532 5707 4.076394 GGTGTAGTGGGATAAGTTTGCAA 58.924 43.478 0.00 0.00 0.00 4.08
4533 5708 4.156008 GGTGTAGTGGGATAAGTTTGCAAG 59.844 45.833 0.00 0.00 0.00 4.01
4534 5709 5.001232 GTGTAGTGGGATAAGTTTGCAAGA 58.999 41.667 0.00 0.00 0.00 3.02
4535 5710 5.648092 GTGTAGTGGGATAAGTTTGCAAGAT 59.352 40.000 0.00 0.00 0.00 2.40
4536 5711 6.821665 GTGTAGTGGGATAAGTTTGCAAGATA 59.178 38.462 0.00 0.00 0.00 1.98
4537 5712 7.335924 GTGTAGTGGGATAAGTTTGCAAGATAA 59.664 37.037 0.00 0.00 0.00 1.75
4538 5713 8.052748 TGTAGTGGGATAAGTTTGCAAGATAAT 58.947 33.333 0.00 0.00 0.00 1.28
4539 5714 9.555727 GTAGTGGGATAAGTTTGCAAGATAATA 57.444 33.333 0.00 0.00 0.00 0.98
4541 5716 9.474313 AGTGGGATAAGTTTGCAAGATAATAAA 57.526 29.630 0.00 0.00 0.00 1.40
4542 5717 9.736023 GTGGGATAAGTTTGCAAGATAATAAAG 57.264 33.333 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 20 3.809279 TCATTTATGACCTGCGCATACAG 59.191 43.478 12.24 2.52 37.42 2.74
22 24 3.479489 TGATCATTTATGACCTGCGCAT 58.521 40.909 12.24 0.00 40.03 4.73
55 57 6.962116 CAGAACTGTACACATCTACTACTTCG 59.038 42.308 5.56 0.00 0.00 3.79
59 61 6.030849 CAGCAGAACTGTACACATCTACTAC 58.969 44.000 5.56 0.00 41.86 2.73
145 163 1.069227 CCTTGTAACAACCAAGAGCGC 60.069 52.381 0.00 0.00 41.44 5.92
147 165 2.226674 GCTCCTTGTAACAACCAAGAGC 59.773 50.000 1.89 0.00 41.44 4.09
179 197 0.322008 CTGGCTTGTCTCCCCTGAAC 60.322 60.000 0.00 0.00 0.00 3.18
264 285 6.620877 TCTTTCCTAGCTTGTCTCCAAATA 57.379 37.500 0.00 0.00 0.00 1.40
268 289 3.198635 CCATCTTTCCTAGCTTGTCTCCA 59.801 47.826 0.00 0.00 0.00 3.86
279 300 7.937700 ATCTTTAGGTCATCCATCTTTCCTA 57.062 36.000 0.00 0.00 35.89 2.94
281 302 6.264067 CCAATCTTTAGGTCATCCATCTTTCC 59.736 42.308 0.00 0.00 35.89 3.13
295 316 0.259938 AGGGCCAGCCAATCTTTAGG 59.740 55.000 11.50 0.00 37.98 2.69
297 318 1.134220 CGTAGGGCCAGCCAATCTTTA 60.134 52.381 11.50 0.00 37.98 1.85
300 321 2.911143 CGTAGGGCCAGCCAATCT 59.089 61.111 11.50 0.95 37.98 2.40
311 332 1.819632 GAACTGCCATGGCGTAGGG 60.820 63.158 30.87 19.26 45.51 3.53
323 362 1.363744 CTCATTCACGGAGGAACTGC 58.636 55.000 0.00 0.00 45.89 4.40
334 373 1.209504 TCAACCCCGATCCTCATTCAC 59.790 52.381 0.00 0.00 0.00 3.18
335 374 1.578897 TCAACCCCGATCCTCATTCA 58.421 50.000 0.00 0.00 0.00 2.57
336 375 2.498167 CATCAACCCCGATCCTCATTC 58.502 52.381 0.00 0.00 0.00 2.67
337 376 1.143684 CCATCAACCCCGATCCTCATT 59.856 52.381 0.00 0.00 0.00 2.57
338 377 0.767375 CCATCAACCCCGATCCTCAT 59.233 55.000 0.00 0.00 0.00 2.90
339 378 1.983119 GCCATCAACCCCGATCCTCA 61.983 60.000 0.00 0.00 0.00 3.86
340 379 1.227973 GCCATCAACCCCGATCCTC 60.228 63.158 0.00 0.00 0.00 3.71
341 380 1.355718 ATGCCATCAACCCCGATCCT 61.356 55.000 0.00 0.00 0.00 3.24
342 381 0.468029 AATGCCATCAACCCCGATCC 60.468 55.000 0.00 0.00 0.00 3.36
389 443 3.650139 TCAGTTCCTAGACGAAAACAGC 58.350 45.455 0.00 0.00 0.00 4.40
424 479 3.383185 CCTAGAGCTCTAGTGGAAACTGG 59.617 52.174 36.92 22.30 43.34 4.00
437 496 6.051348 GTGAGATACACCAGCCTAGAGCTC 62.051 54.167 5.27 5.27 45.71 4.09
467 531 1.202770 CGGGAAGGTCACTCCAGTTTT 60.203 52.381 0.00 0.00 39.02 2.43
495 559 6.373216 TGGTAAAATAAAGGATCACACCGAAG 59.627 38.462 0.00 0.00 34.73 3.79
496 560 6.149807 GTGGTAAAATAAAGGATCACACCGAA 59.850 38.462 0.00 0.00 34.73 4.30
498 562 5.163693 GGTGGTAAAATAAAGGATCACACCG 60.164 44.000 0.00 0.00 35.83 4.94
511 634 9.083422 TCACATGAAAATTGAGGTGGTAAAATA 57.917 29.630 0.00 0.00 0.00 1.40
535 658 9.725019 AAAGAACAATAGTCAATGTACATCTCA 57.275 29.630 9.23 0.00 0.00 3.27
587 710 6.095021 AGAGTTTTCGTAGAAACAAAGGCTTT 59.905 34.615 6.68 6.68 45.90 3.51
602 725 5.357032 AGTTTGGAATGAACAGAGTTTTCGT 59.643 36.000 0.00 0.00 0.00 3.85
603 726 5.821204 AGTTTGGAATGAACAGAGTTTTCG 58.179 37.500 0.00 0.00 0.00 3.46
606 729 6.261826 CAGAGAGTTTGGAATGAACAGAGTTT 59.738 38.462 0.00 0.00 0.00 2.66
607 730 5.762218 CAGAGAGTTTGGAATGAACAGAGTT 59.238 40.000 0.00 0.00 0.00 3.01
608 731 5.163258 ACAGAGAGTTTGGAATGAACAGAGT 60.163 40.000 0.00 0.00 0.00 3.24
609 732 5.303971 ACAGAGAGTTTGGAATGAACAGAG 58.696 41.667 0.00 0.00 0.00 3.35
610 733 5.296151 ACAGAGAGTTTGGAATGAACAGA 57.704 39.130 0.00 0.00 0.00 3.41
611 734 5.991606 TGTACAGAGAGTTTGGAATGAACAG 59.008 40.000 0.00 0.00 0.00 3.16
612 735 5.924356 TGTACAGAGAGTTTGGAATGAACA 58.076 37.500 0.00 0.00 0.00 3.18
613 736 7.173218 TCAATGTACAGAGAGTTTGGAATGAAC 59.827 37.037 0.33 0.00 0.00 3.18
614 737 7.173218 GTCAATGTACAGAGAGTTTGGAATGAA 59.827 37.037 0.33 0.00 0.00 2.57
615 738 6.650807 GTCAATGTACAGAGAGTTTGGAATGA 59.349 38.462 0.33 0.00 0.00 2.57
616 739 6.652481 AGTCAATGTACAGAGAGTTTGGAATG 59.348 38.462 0.33 0.00 0.00 2.67
617 740 6.773638 AGTCAATGTACAGAGAGTTTGGAAT 58.226 36.000 0.33 0.00 0.00 3.01
618 741 6.174720 AGTCAATGTACAGAGAGTTTGGAA 57.825 37.500 0.33 0.00 0.00 3.53
619 742 5.808366 AGTCAATGTACAGAGAGTTTGGA 57.192 39.130 0.33 0.00 0.00 3.53
620 743 7.604164 ACAATAGTCAATGTACAGAGAGTTTGG 59.396 37.037 11.55 5.97 0.00 3.28
621 744 8.539770 ACAATAGTCAATGTACAGAGAGTTTG 57.460 34.615 11.55 14.93 0.00 2.93
705 828 6.789268 TCCAACCAGATCCTTTCATTTAAGA 58.211 36.000 0.00 0.00 0.00 2.10
706 829 7.466746 TTCCAACCAGATCCTTTCATTTAAG 57.533 36.000 0.00 0.00 0.00 1.85
709 832 6.259123 AGATTCCAACCAGATCCTTTCATTT 58.741 36.000 0.00 0.00 0.00 2.32
711 834 5.463051 AGATTCCAACCAGATCCTTTCAT 57.537 39.130 0.00 0.00 0.00 2.57
713 836 7.394641 ACTTTAAGATTCCAACCAGATCCTTTC 59.605 37.037 0.00 0.00 0.00 2.62
714 837 7.177392 CACTTTAAGATTCCAACCAGATCCTTT 59.823 37.037 0.00 0.00 0.00 3.11
715 838 6.660949 CACTTTAAGATTCCAACCAGATCCTT 59.339 38.462 0.00 0.00 0.00 3.36
716 839 6.183347 CACTTTAAGATTCCAACCAGATCCT 58.817 40.000 0.00 0.00 0.00 3.24
717 840 5.946377 ACACTTTAAGATTCCAACCAGATCC 59.054 40.000 0.00 0.00 0.00 3.36
718 841 6.127897 CCACACTTTAAGATTCCAACCAGATC 60.128 42.308 0.00 0.00 0.00 2.75
721 844 4.321230 GCCACACTTTAAGATTCCAACCAG 60.321 45.833 0.00 0.00 0.00 4.00
722 845 3.572255 GCCACACTTTAAGATTCCAACCA 59.428 43.478 0.00 0.00 0.00 3.67
723 846 3.572255 TGCCACACTTTAAGATTCCAACC 59.428 43.478 0.00 0.00 0.00 3.77
726 849 4.072131 GACTGCCACACTTTAAGATTCCA 58.928 43.478 0.00 0.00 0.00 3.53
728 851 5.948992 AAGACTGCCACACTTTAAGATTC 57.051 39.130 0.00 0.00 0.00 2.52
730 853 9.686683 ATTATTAAGACTGCCACACTTTAAGAT 57.313 29.630 0.00 0.00 0.00 2.40
731 854 8.946085 CATTATTAAGACTGCCACACTTTAAGA 58.054 33.333 0.00 0.00 0.00 2.10
732 855 8.730680 ACATTATTAAGACTGCCACACTTTAAG 58.269 33.333 0.00 0.00 0.00 1.85
734 857 9.727859 TTACATTATTAAGACTGCCACACTTTA 57.272 29.630 0.00 0.00 0.00 1.85
735 858 8.630054 TTACATTATTAAGACTGCCACACTTT 57.370 30.769 0.00 0.00 0.00 2.66
737 860 8.807948 AATTACATTATTAAGACTGCCACACT 57.192 30.769 0.00 0.00 0.00 3.55
762 1851 7.474445 AGAAGCCTAGAGGATAACTGATGATA 58.526 38.462 0.00 0.00 37.39 2.15
935 2026 4.938226 CCGCTCTCTTCTTTTTATCAACCT 59.062 41.667 0.00 0.00 0.00 3.50
967 2061 2.975489 AGGTTCAGAGAGAGAAAGCCAA 59.025 45.455 0.00 0.00 0.00 4.52
1008 2104 1.754621 CACCCTCTCCTCGCTGCTA 60.755 63.158 0.00 0.00 0.00 3.49
1043 2139 2.753701 CATTGTCGGGGTGGGTCA 59.246 61.111 0.00 0.00 0.00 4.02
1045 2141 4.360405 GCCATTGTCGGGGTGGGT 62.360 66.667 0.00 0.00 33.58 4.51
1049 2145 4.752879 CGTCGCCATTGTCGGGGT 62.753 66.667 0.00 0.00 39.89 4.95
1135 2231 6.863645 CGAAAGAAAACAGAGACTGACTGATA 59.136 38.462 5.76 0.00 38.55 2.15
1141 2237 4.119862 CACCGAAAGAAAACAGAGACTGA 58.880 43.478 5.76 0.00 35.18 3.41
1149 2245 5.818336 TGATAGTGAACACCGAAAGAAAACA 59.182 36.000 1.11 0.00 0.00 2.83
1150 2246 6.018180 ACTGATAGTGAACACCGAAAGAAAAC 60.018 38.462 1.11 0.00 0.00 2.43
1151 2247 6.053005 ACTGATAGTGAACACCGAAAGAAAA 58.947 36.000 1.11 0.00 0.00 2.29
1153 2249 5.209818 ACTGATAGTGAACACCGAAAGAA 57.790 39.130 1.11 0.00 0.00 2.52
1156 2252 6.932400 ACAAATACTGATAGTGAACACCGAAA 59.068 34.615 1.11 0.00 0.00 3.46
1160 2256 5.354234 CCCACAAATACTGATAGTGAACACC 59.646 44.000 1.11 0.00 32.14 4.16
1161 2257 6.092259 GTCCCACAAATACTGATAGTGAACAC 59.908 42.308 0.00 0.00 32.14 3.32
1163 2259 6.170506 TGTCCCACAAATACTGATAGTGAAC 58.829 40.000 0.00 0.00 32.14 3.18
1165 2261 5.719563 TCTGTCCCACAAATACTGATAGTGA 59.280 40.000 0.00 0.00 32.14 3.41
1167 2263 5.721960 ACTCTGTCCCACAAATACTGATAGT 59.278 40.000 0.00 0.00 0.00 2.12
1168 2264 6.227298 ACTCTGTCCCACAAATACTGATAG 57.773 41.667 0.00 0.00 0.00 2.08
1169 2265 6.620877 AACTCTGTCCCACAAATACTGATA 57.379 37.500 0.00 0.00 0.00 2.15
1170 2266 5.505181 AACTCTGTCCCACAAATACTGAT 57.495 39.130 0.00 0.00 0.00 2.90
1171 2267 4.974645 AACTCTGTCCCACAAATACTGA 57.025 40.909 0.00 0.00 0.00 3.41
1173 2269 6.182507 TGTAAACTCTGTCCCACAAATACT 57.817 37.500 0.00 0.00 0.00 2.12
1174 2270 6.653320 TGATGTAAACTCTGTCCCACAAATAC 59.347 38.462 0.00 0.00 0.00 1.89
1176 2272 5.473504 GTGATGTAAACTCTGTCCCACAAAT 59.526 40.000 0.00 0.00 0.00 2.32
1192 2295 9.513906 TCCAAAATAGTTTGATCTGTGATGTAA 57.486 29.630 16.81 0.00 45.99 2.41
1194 2297 7.361201 CGTCCAAAATAGTTTGATCTGTGATGT 60.361 37.037 16.81 0.00 45.99 3.06
1200 2303 8.076178 AGAAAACGTCCAAAATAGTTTGATCTG 58.924 33.333 16.81 6.44 45.99 2.90
1205 2329 5.918576 GGGAGAAAACGTCCAAAATAGTTTG 59.081 40.000 8.65 8.65 43.26 2.93
1232 2356 8.854614 ATCATTAACTGGAATACTAGCCATTC 57.145 34.615 8.51 8.51 32.89 2.67
1233 2357 8.439971 TGATCATTAACTGGAATACTAGCCATT 58.560 33.333 0.00 0.00 32.89 3.16
1235 2359 7.373617 TGATCATTAACTGGAATACTAGCCA 57.626 36.000 0.00 0.00 0.00 4.75
1236 2360 8.097038 TCATGATCATTAACTGGAATACTAGCC 58.903 37.037 5.16 0.00 0.00 3.93
1237 2361 9.664332 ATCATGATCATTAACTGGAATACTAGC 57.336 33.333 5.16 0.00 0.00 3.42
1240 2364 9.941325 GAGATCATGATCATTAACTGGAATACT 57.059 33.333 31.99 10.02 40.22 2.12
1241 2365 9.941325 AGAGATCATGATCATTAACTGGAATAC 57.059 33.333 31.99 5.29 40.22 1.89
1244 2368 9.152327 ACTAGAGATCATGATCATTAACTGGAA 57.848 33.333 31.99 11.01 40.22 3.53
1245 2369 8.718158 ACTAGAGATCATGATCATTAACTGGA 57.282 34.615 31.99 11.53 40.22 3.86
1246 2370 8.583296 TGACTAGAGATCATGATCATTAACTGG 58.417 37.037 31.99 23.78 40.22 4.00
1247 2371 9.978044 TTGACTAGAGATCATGATCATTAACTG 57.022 33.333 31.99 18.52 40.22 3.16
1273 2397 8.955388 AGATTACCAAAACAGCAACAAATTTTT 58.045 25.926 0.00 0.00 0.00 1.94
1274 2398 8.504812 AGATTACCAAAACAGCAACAAATTTT 57.495 26.923 0.00 0.00 0.00 1.82
1275 2399 9.777297 ATAGATTACCAAAACAGCAACAAATTT 57.223 25.926 0.00 0.00 0.00 1.82
1276 2400 9.206870 CATAGATTACCAAAACAGCAACAAATT 57.793 29.630 0.00 0.00 0.00 1.82
1277 2401 7.818930 CCATAGATTACCAAAACAGCAACAAAT 59.181 33.333 0.00 0.00 0.00 2.32
1278 2402 7.151308 CCATAGATTACCAAAACAGCAACAAA 58.849 34.615 0.00 0.00 0.00 2.83
1279 2403 6.266558 ACCATAGATTACCAAAACAGCAACAA 59.733 34.615 0.00 0.00 0.00 2.83
1280 2404 5.772672 ACCATAGATTACCAAAACAGCAACA 59.227 36.000 0.00 0.00 0.00 3.33
1281 2405 6.267496 ACCATAGATTACCAAAACAGCAAC 57.733 37.500 0.00 0.00 0.00 4.17
1282 2406 6.071616 GGAACCATAGATTACCAAAACAGCAA 60.072 38.462 0.00 0.00 0.00 3.91
1283 2407 5.417580 GGAACCATAGATTACCAAAACAGCA 59.582 40.000 0.00 0.00 0.00 4.41
1284 2408 5.652452 AGGAACCATAGATTACCAAAACAGC 59.348 40.000 0.00 0.00 0.00 4.40
1285 2409 6.404734 GCAGGAACCATAGATTACCAAAACAG 60.405 42.308 0.00 0.00 0.00 3.16
1286 2410 5.417580 GCAGGAACCATAGATTACCAAAACA 59.582 40.000 0.00 0.00 0.00 2.83
1287 2411 5.652452 AGCAGGAACCATAGATTACCAAAAC 59.348 40.000 0.00 0.00 0.00 2.43
1288 2412 5.652014 CAGCAGGAACCATAGATTACCAAAA 59.348 40.000 0.00 0.00 0.00 2.44
1289 2413 5.192927 CAGCAGGAACCATAGATTACCAAA 58.807 41.667 0.00 0.00 0.00 3.28
1290 2414 4.385199 CCAGCAGGAACCATAGATTACCAA 60.385 45.833 0.00 0.00 36.89 3.67
1291 2415 3.136443 CCAGCAGGAACCATAGATTACCA 59.864 47.826 0.00 0.00 36.89 3.25
1292 2416 3.496870 CCCAGCAGGAACCATAGATTACC 60.497 52.174 0.00 0.00 38.24 2.85
1293 2417 3.391296 TCCCAGCAGGAACCATAGATTAC 59.609 47.826 0.00 0.00 43.78 1.89
1294 2418 3.664320 TCCCAGCAGGAACCATAGATTA 58.336 45.455 0.00 0.00 43.78 1.75
1295 2419 2.492025 TCCCAGCAGGAACCATAGATT 58.508 47.619 0.00 0.00 43.78 2.40
1296 2420 2.196742 TCCCAGCAGGAACCATAGAT 57.803 50.000 0.00 0.00 43.78 1.98
1297 2421 3.730116 TCCCAGCAGGAACCATAGA 57.270 52.632 0.00 0.00 43.78 1.98
1306 2430 4.170468 ACCTGTTAATTATCCCAGCAGG 57.830 45.455 6.53 6.53 45.26 4.85
1307 2431 4.202050 GCAACCTGTTAATTATCCCAGCAG 60.202 45.833 0.00 0.00 0.00 4.24
1308 2432 3.699038 GCAACCTGTTAATTATCCCAGCA 59.301 43.478 0.00 0.00 0.00 4.41
1309 2433 3.954258 AGCAACCTGTTAATTATCCCAGC 59.046 43.478 0.00 0.00 0.00 4.85
1310 2434 5.239525 GCTAGCAACCTGTTAATTATCCCAG 59.760 44.000 10.63 0.00 0.00 4.45
1311 2435 5.104109 AGCTAGCAACCTGTTAATTATCCCA 60.104 40.000 18.83 0.00 0.00 4.37
1312 2436 5.377478 AGCTAGCAACCTGTTAATTATCCC 58.623 41.667 18.83 0.00 0.00 3.85
1313 2437 8.622948 ATTAGCTAGCAACCTGTTAATTATCC 57.377 34.615 18.83 0.00 0.00 2.59
1316 2440 9.333724 GGTAATTAGCTAGCAACCTGTTAATTA 57.666 33.333 18.83 15.97 0.00 1.40
1317 2441 7.832187 TGGTAATTAGCTAGCAACCTGTTAATT 59.168 33.333 18.83 16.89 0.00 1.40
1318 2442 7.282450 GTGGTAATTAGCTAGCAACCTGTTAAT 59.718 37.037 18.83 7.36 31.45 1.40
1319 2443 6.596497 GTGGTAATTAGCTAGCAACCTGTTAA 59.404 38.462 18.83 5.14 31.45 2.01
1320 2444 6.110707 GTGGTAATTAGCTAGCAACCTGTTA 58.889 40.000 18.83 4.44 31.45 2.41
1321 2445 4.941873 GTGGTAATTAGCTAGCAACCTGTT 59.058 41.667 18.83 5.38 31.45 3.16
1322 2446 4.514401 GTGGTAATTAGCTAGCAACCTGT 58.486 43.478 18.83 0.00 31.45 4.00
1323 2447 3.877508 GGTGGTAATTAGCTAGCAACCTG 59.122 47.826 18.83 0.00 32.03 4.00
1324 2448 3.521937 TGGTGGTAATTAGCTAGCAACCT 59.478 43.478 18.83 0.00 36.38 3.50
1325 2449 3.881220 TGGTGGTAATTAGCTAGCAACC 58.119 45.455 18.83 15.36 36.38 3.77
1326 2450 4.201920 GCTTGGTGGTAATTAGCTAGCAAC 60.202 45.833 18.83 6.57 41.63 4.17
1327 2451 3.945285 GCTTGGTGGTAATTAGCTAGCAA 59.055 43.478 18.83 20.19 41.63 3.91
1347 2471 5.532406 TGAAAATGTTTCTTCTACTGCTGCT 59.468 36.000 0.00 0.00 0.00 4.24
1349 2473 6.963796 AGTGAAAATGTTTCTTCTACTGCTG 58.036 36.000 2.68 0.00 0.00 4.41
1371 2495 5.764686 TGTCATAACAGAAATTGTGCAGAGT 59.235 36.000 0.00 0.00 40.74 3.24
1387 2511 5.006165 GCAGAGCTCTGTTACATGTCATAAC 59.994 44.000 37.25 16.76 45.45 1.89
1404 2531 1.072489 CCATCCATCATGAGCAGAGCT 59.928 52.381 0.09 0.00 43.88 4.09
1467 2610 1.906333 CCGTCAGGGGGTTTTTGGG 60.906 63.158 0.00 0.00 0.00 4.12
1472 2615 4.660938 GCAGCCGTCAGGGGGTTT 62.661 66.667 0.00 0.00 35.09 3.27
1519 2662 4.349503 TGCTGCGGCCATTGTCCT 62.350 61.111 16.57 0.00 37.74 3.85
1523 2666 4.492160 CAGCTGCTGCGGCCATTG 62.492 66.667 28.54 17.25 45.42 2.82
1544 2687 2.307098 GCCTATGCCCTTGAGGATATGT 59.693 50.000 0.00 0.00 38.24 2.29
1547 2690 0.976641 CGCCTATGCCCTTGAGGATA 59.023 55.000 0.00 0.00 38.24 2.59
1673 2816 2.230508 GGTGTCGTTGTAGGTGATCTGA 59.769 50.000 0.00 0.00 0.00 3.27
1778 2921 5.414360 TCTTCTCGATCTTCTCCATTGTTG 58.586 41.667 0.00 0.00 0.00 3.33
1799 2942 8.915057 TCTTCTCAATCTTTTTCACTCAATCT 57.085 30.769 0.00 0.00 0.00 2.40
1826 2969 7.149973 ACAGAGTTTGATCAATCAACCAATTG 58.850 34.615 16.79 0.00 45.63 2.32
1865 3008 1.168407 ATCCCATCCTGCATTTCGCG 61.168 55.000 0.00 0.00 46.97 5.87
2542 3685 3.394836 GCTTCGCCTGGTCCTCCT 61.395 66.667 0.00 0.00 34.23 3.69
2792 3935 2.865670 GCAGATGTAGAAGATGAGCCCG 60.866 54.545 0.00 0.00 0.00 6.13
2855 3998 0.610687 ACAGCTTCTCGAAGGGGAAG 59.389 55.000 8.59 7.57 39.36 3.46
3082 4225 6.287525 CACAAGAAGAAGAAGAAGAAGAGGT 58.712 40.000 0.00 0.00 0.00 3.85
3083 4226 5.179182 GCACAAGAAGAAGAAGAAGAAGAGG 59.821 44.000 0.00 0.00 0.00 3.69
3084 4227 5.757320 TGCACAAGAAGAAGAAGAAGAAGAG 59.243 40.000 0.00 0.00 0.00 2.85
3085 4228 5.674525 TGCACAAGAAGAAGAAGAAGAAGA 58.325 37.500 0.00 0.00 0.00 2.87
3089 4232 4.474113 GCATGCACAAGAAGAAGAAGAAG 58.526 43.478 14.21 0.00 0.00 2.85
3090 4233 3.254166 GGCATGCACAAGAAGAAGAAGAA 59.746 43.478 21.36 0.00 0.00 2.52
3143 4289 3.505293 CCTGATGATCACAGATCGAGCTA 59.495 47.826 20.26 0.00 37.54 3.32
3146 4292 2.029200 CCCCTGATGATCACAGATCGAG 60.029 54.545 20.26 8.32 37.54 4.04
3254 4405 1.601419 GCTGCACGTAGTACCCTCCA 61.601 60.000 0.00 0.00 41.61 3.86
3524 4675 1.990160 TTCACAAGGGCGTGAGGGTT 61.990 55.000 0.00 0.00 46.14 4.11
3562 4731 3.024547 AGACCTATCTAGCAAAGCACGA 58.975 45.455 0.00 0.00 31.46 4.35
3608 4781 7.169645 GCTTGTACCCATTAATAAACATGCATG 59.830 37.037 25.09 25.09 37.71 4.06
3619 4792 5.445964 CCTTGTAGGCTTGTACCCATTAAT 58.554 41.667 0.00 0.00 0.00 1.40
3652 4825 0.609662 AAACCCATGCACATTGCTCC 59.390 50.000 0.00 0.00 45.31 4.70
3736 4909 0.676782 ATACGTTGGGACAGCTTGGC 60.677 55.000 0.00 0.00 42.39 4.52
3752 4925 9.341899 GGGAATTTAAATACAATCATCGCATAC 57.658 33.333 0.01 0.00 0.00 2.39
3753 4926 9.072375 TGGGAATTTAAATACAATCATCGCATA 57.928 29.630 0.01 0.00 0.00 3.14
3871 5046 2.285977 AGAAGGTGGTTGACGTGAAAC 58.714 47.619 0.00 0.00 0.00 2.78
3878 5053 2.106684 AGGAAGGAAGAAGGTGGTTGAC 59.893 50.000 0.00 0.00 0.00 3.18
3883 5058 1.004862 GGGAAGGAAGGAAGAAGGTGG 59.995 57.143 0.00 0.00 0.00 4.61
3886 5061 0.626382 GGGGGAAGGAAGGAAGAAGG 59.374 60.000 0.00 0.00 0.00 3.46
3893 5068 1.299976 CGTGAAGGGGGAAGGAAGG 59.700 63.158 0.00 0.00 0.00 3.46
3903 5078 1.374252 CGAGGTTGGACGTGAAGGG 60.374 63.158 0.00 0.00 0.00 3.95
3904 5079 0.666577 GACGAGGTTGGACGTGAAGG 60.667 60.000 0.00 0.00 42.74 3.46
3906 5081 1.008194 CGACGAGGTTGGACGTGAA 60.008 57.895 0.00 0.00 42.74 3.18
3907 5082 2.640989 CGACGAGGTTGGACGTGA 59.359 61.111 0.00 0.00 42.74 4.35
3908 5083 2.430244 CCGACGAGGTTGGACGTG 60.430 66.667 0.00 0.00 42.74 4.49
3909 5084 2.595463 TCCGACGAGGTTGGACGT 60.595 61.111 0.00 0.00 40.82 4.34
3912 5087 0.251033 TCTTCTCCGACGAGGTTGGA 60.251 55.000 0.00 4.72 43.20 3.53
3913 5088 0.109226 GTCTTCTCCGACGAGGTTGG 60.109 60.000 0.00 0.00 41.99 3.77
3914 5089 0.596577 TGTCTTCTCCGACGAGGTTG 59.403 55.000 0.00 0.00 41.99 3.77
3915 5090 1.000496 GTTGTCTTCTCCGACGAGGTT 60.000 52.381 0.00 0.00 41.99 3.50
3916 5091 0.597072 GTTGTCTTCTCCGACGAGGT 59.403 55.000 0.00 0.00 41.99 3.85
3918 5093 0.109226 GGGTTGTCTTCTCCGACGAG 60.109 60.000 0.00 0.00 36.71 4.18
3919 5094 1.530013 GGGGTTGTCTTCTCCGACGA 61.530 60.000 0.00 0.00 36.71 4.20
3920 5095 1.080025 GGGGTTGTCTTCTCCGACG 60.080 63.158 0.00 0.00 36.71 5.12
3921 5096 0.320508 GTGGGGTTGTCTTCTCCGAC 60.321 60.000 0.00 0.00 34.52 4.79
3922 5097 0.471211 AGTGGGGTTGTCTTCTCCGA 60.471 55.000 0.00 0.00 0.00 4.55
3988 5163 4.153371 AGATAATGGGGTCATAGCTCCT 57.847 45.455 0.00 0.00 32.44 3.69
4362 5537 5.393124 TCGACGCTCTTACTTATCGAAAAA 58.607 37.500 0.00 0.00 35.80 1.94
4363 5538 4.973396 TCGACGCTCTTACTTATCGAAAA 58.027 39.130 0.00 0.00 35.80 2.29
4364 5539 4.604843 TCGACGCTCTTACTTATCGAAA 57.395 40.909 0.00 0.00 35.80 3.46
4365 5540 4.337763 GTTCGACGCTCTTACTTATCGAA 58.662 43.478 2.99 2.99 43.90 3.71
4366 5541 3.242543 GGTTCGACGCTCTTACTTATCGA 60.243 47.826 0.00 0.00 36.85 3.59
4367 5542 3.034562 GGTTCGACGCTCTTACTTATCG 58.965 50.000 0.00 0.00 0.00 2.92
4368 5543 3.181493 TGGGTTCGACGCTCTTACTTATC 60.181 47.826 0.00 0.00 31.67 1.75
4369 5544 2.756760 TGGGTTCGACGCTCTTACTTAT 59.243 45.455 0.00 0.00 31.67 1.73
4370 5545 2.161855 TGGGTTCGACGCTCTTACTTA 58.838 47.619 0.00 0.00 31.67 2.24
4371 5546 0.963962 TGGGTTCGACGCTCTTACTT 59.036 50.000 0.00 0.00 31.67 2.24
4372 5547 0.963962 TTGGGTTCGACGCTCTTACT 59.036 50.000 0.00 0.00 31.67 2.24
4373 5548 1.066136 GTTGGGTTCGACGCTCTTAC 58.934 55.000 0.00 0.00 31.67 2.34
4374 5549 0.675083 TGTTGGGTTCGACGCTCTTA 59.325 50.000 0.00 0.00 31.67 2.10
4375 5550 0.179067 TTGTTGGGTTCGACGCTCTT 60.179 50.000 0.00 0.00 31.67 2.85
4376 5551 0.600255 CTTGTTGGGTTCGACGCTCT 60.600 55.000 0.00 0.00 31.67 4.09
4377 5552 1.566018 CCTTGTTGGGTTCGACGCTC 61.566 60.000 0.00 0.00 31.67 5.03
4378 5553 1.597027 CCTTGTTGGGTTCGACGCT 60.597 57.895 0.00 0.00 31.67 5.07
4379 5554 1.595929 TCCTTGTTGGGTTCGACGC 60.596 57.895 0.00 0.00 36.20 5.19
4380 5555 1.226030 GGTCCTTGTTGGGTTCGACG 61.226 60.000 0.00 0.00 36.20 5.12
4381 5556 0.108019 AGGTCCTTGTTGGGTTCGAC 59.892 55.000 0.00 0.00 36.20 4.20
4382 5557 1.719529 TAGGTCCTTGTTGGGTTCGA 58.280 50.000 0.00 0.00 36.20 3.71
4383 5558 2.554370 TTAGGTCCTTGTTGGGTTCG 57.446 50.000 0.00 0.00 36.20 3.95
4384 5559 4.094830 TCTTTAGGTCCTTGTTGGGTTC 57.905 45.455 0.00 0.00 36.20 3.62
4385 5560 4.741928 ATCTTTAGGTCCTTGTTGGGTT 57.258 40.909 0.00 0.00 36.20 4.11
4386 5561 4.600111 TGTATCTTTAGGTCCTTGTTGGGT 59.400 41.667 0.00 0.00 36.20 4.51
4387 5562 5.174037 TGTATCTTTAGGTCCTTGTTGGG 57.826 43.478 0.00 0.00 36.20 4.12
4388 5563 7.703058 AATTGTATCTTTAGGTCCTTGTTGG 57.297 36.000 0.00 0.00 37.10 3.77
4433 5608 1.127951 GTAAAGTTGCATCGGTGGTCG 59.872 52.381 0.00 0.00 40.90 4.79
4434 5609 1.127951 CGTAAAGTTGCATCGGTGGTC 59.872 52.381 0.00 0.00 0.00 4.02
4435 5610 1.153353 CGTAAAGTTGCATCGGTGGT 58.847 50.000 0.00 0.00 0.00 4.16
4436 5611 0.179200 GCGTAAAGTTGCATCGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
4437 5612 0.515127 TGCGTAAAGTTGCATCGGTG 59.485 50.000 0.00 0.00 35.90 4.94
4438 5613 0.515564 GTGCGTAAAGTTGCATCGGT 59.484 50.000 0.00 0.00 43.96 4.69
4439 5614 0.515127 TGTGCGTAAAGTTGCATCGG 59.485 50.000 0.00 0.00 43.96 4.18
4440 5615 2.159720 TGATGTGCGTAAAGTTGCATCG 60.160 45.455 0.00 0.00 43.96 3.84
4441 5616 3.469899 TGATGTGCGTAAAGTTGCATC 57.530 42.857 0.00 0.00 43.96 3.91
4442 5617 3.004210 TGTTGATGTGCGTAAAGTTGCAT 59.996 39.130 0.00 0.00 43.96 3.96
4443 5618 2.356069 TGTTGATGTGCGTAAAGTTGCA 59.644 40.909 0.00 0.00 39.13 4.08
4444 5619 2.993545 TGTTGATGTGCGTAAAGTTGC 58.006 42.857 0.00 0.00 0.00 4.17
4445 5620 4.318071 CGAATGTTGATGTGCGTAAAGTTG 59.682 41.667 0.00 0.00 0.00 3.16
4446 5621 4.463209 CGAATGTTGATGTGCGTAAAGTT 58.537 39.130 0.00 0.00 0.00 2.66
4447 5622 3.666902 GCGAATGTTGATGTGCGTAAAGT 60.667 43.478 0.00 0.00 0.00 2.66
4448 5623 2.840176 GCGAATGTTGATGTGCGTAAAG 59.160 45.455 0.00 0.00 0.00 1.85
4449 5624 2.482336 AGCGAATGTTGATGTGCGTAAA 59.518 40.909 0.00 0.00 0.00 2.01
4450 5625 2.073056 AGCGAATGTTGATGTGCGTAA 58.927 42.857 0.00 0.00 0.00 3.18
4451 5626 1.720805 AGCGAATGTTGATGTGCGTA 58.279 45.000 0.00 0.00 0.00 4.42
4452 5627 0.874390 AAGCGAATGTTGATGTGCGT 59.126 45.000 0.00 0.00 0.00 5.24
4453 5628 1.645265 CAAAGCGAATGTTGATGTGCG 59.355 47.619 0.00 0.00 0.00 5.34
4454 5629 1.387756 GCAAAGCGAATGTTGATGTGC 59.612 47.619 0.00 0.00 0.00 4.57
4455 5630 2.663808 TGCAAAGCGAATGTTGATGTG 58.336 42.857 0.00 0.00 0.00 3.21
4456 5631 3.581024 ATGCAAAGCGAATGTTGATGT 57.419 38.095 0.00 0.00 0.00 3.06
4457 5632 3.921630 TCAATGCAAAGCGAATGTTGATG 59.078 39.130 0.00 0.00 0.00 3.07
4458 5633 4.177165 TCAATGCAAAGCGAATGTTGAT 57.823 36.364 0.00 0.00 0.00 2.57
4459 5634 3.639716 TCAATGCAAAGCGAATGTTGA 57.360 38.095 0.00 0.00 0.00 3.18
4460 5635 4.712191 TTTCAATGCAAAGCGAATGTTG 57.288 36.364 0.00 0.00 0.00 3.33
4461 5636 6.646240 ACTTATTTCAATGCAAAGCGAATGTT 59.354 30.769 0.00 0.00 0.00 2.71
4462 5637 6.158598 ACTTATTTCAATGCAAAGCGAATGT 58.841 32.000 0.00 0.00 0.00 2.71
4463 5638 6.636666 ACTTATTTCAATGCAAAGCGAATG 57.363 33.333 0.00 0.00 0.00 2.67
4464 5639 8.931385 ATTACTTATTTCAATGCAAAGCGAAT 57.069 26.923 0.00 0.00 0.00 3.34
4465 5640 9.847706 TTATTACTTATTTCAATGCAAAGCGAA 57.152 25.926 0.00 0.00 0.00 4.70
4466 5641 9.847706 TTTATTACTTATTTCAATGCAAAGCGA 57.152 25.926 0.00 0.00 0.00 4.93
4492 5667 9.924650 CACTACACCTACAAAGTACTTCTAATT 57.075 33.333 8.95 0.00 0.00 1.40
4493 5668 8.529476 CCACTACACCTACAAAGTACTTCTAAT 58.471 37.037 8.95 0.00 0.00 1.73
4494 5669 7.039504 CCCACTACACCTACAAAGTACTTCTAA 60.040 40.741 8.95 0.00 0.00 2.10
4495 5670 6.435277 CCCACTACACCTACAAAGTACTTCTA 59.565 42.308 8.95 0.94 0.00 2.10
4496 5671 5.245526 CCCACTACACCTACAAAGTACTTCT 59.754 44.000 8.95 0.00 0.00 2.85
4497 5672 5.244626 TCCCACTACACCTACAAAGTACTTC 59.755 44.000 8.95 0.00 0.00 3.01
4498 5673 5.149976 TCCCACTACACCTACAAAGTACTT 58.850 41.667 1.12 1.12 0.00 2.24
4499 5674 4.744237 TCCCACTACACCTACAAAGTACT 58.256 43.478 0.00 0.00 0.00 2.73
4500 5675 5.672421 ATCCCACTACACCTACAAAGTAC 57.328 43.478 0.00 0.00 0.00 2.73
4501 5676 6.955851 ACTTATCCCACTACACCTACAAAGTA 59.044 38.462 0.00 0.00 0.00 2.24
4502 5677 5.783875 ACTTATCCCACTACACCTACAAAGT 59.216 40.000 0.00 0.00 0.00 2.66
4503 5678 6.295719 ACTTATCCCACTACACCTACAAAG 57.704 41.667 0.00 0.00 0.00 2.77
4504 5679 6.691255 AACTTATCCCACTACACCTACAAA 57.309 37.500 0.00 0.00 0.00 2.83
4505 5680 6.469410 CAAACTTATCCCACTACACCTACAA 58.531 40.000 0.00 0.00 0.00 2.41
4506 5681 5.570034 GCAAACTTATCCCACTACACCTACA 60.570 44.000 0.00 0.00 0.00 2.74
4507 5682 4.874396 GCAAACTTATCCCACTACACCTAC 59.126 45.833 0.00 0.00 0.00 3.18
4508 5683 4.532916 TGCAAACTTATCCCACTACACCTA 59.467 41.667 0.00 0.00 0.00 3.08
4509 5684 3.329520 TGCAAACTTATCCCACTACACCT 59.670 43.478 0.00 0.00 0.00 4.00
4510 5685 3.681593 TGCAAACTTATCCCACTACACC 58.318 45.455 0.00 0.00 0.00 4.16
4511 5686 5.001232 TCTTGCAAACTTATCCCACTACAC 58.999 41.667 0.00 0.00 0.00 2.90
4512 5687 5.235850 TCTTGCAAACTTATCCCACTACA 57.764 39.130 0.00 0.00 0.00 2.74
4513 5688 7.859325 TTATCTTGCAAACTTATCCCACTAC 57.141 36.000 0.00 0.00 0.00 2.73
4515 5690 9.474313 TTTATTATCTTGCAAACTTATCCCACT 57.526 29.630 0.00 0.00 0.00 4.00
4516 5691 9.736023 CTTTATTATCTTGCAAACTTATCCCAC 57.264 33.333 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.