Multiple sequence alignment - TraesCS7B01G279700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G279700 chr7B 100.000 4455 0 0 1 4455 512707946 512712400 0.000000e+00 8227.0
1 TraesCS7B01G279700 chr7B 93.083 3007 206 2 1 3006 512695386 512698391 0.000000e+00 4399.0
2 TraesCS7B01G279700 chr7B 88.639 3028 308 21 1 3006 663119983 663116970 0.000000e+00 3653.0
3 TraesCS7B01G279700 chr7B 94.310 1283 54 11 3006 4284 512698425 512699692 0.000000e+00 1947.0
4 TraesCS7B01G279700 chr7B 82.906 702 80 19 3018 3696 663116699 663116015 2.970000e-166 595.0
5 TraesCS7B01G279700 chr7B 77.528 534 104 16 2292 2817 483795229 483794704 1.560000e-79 307.0
6 TraesCS7B01G279700 chr7B 94.340 53 3 0 4336 4388 512701011 512701063 1.030000e-11 82.4
7 TraesCS7B01G279700 chr7D 89.873 2903 286 8 1 2899 485025851 485028749 0.000000e+00 3725.0
8 TraesCS7B01G279700 chr7D 94.844 1280 58 7 3009 4284 485028841 485030116 0.000000e+00 1991.0
9 TraesCS7B01G279700 chr7D 77.222 540 109 14 2285 2817 461248132 461247600 2.010000e-78 303.0
10 TraesCS7B01G279700 chr7D 77.264 541 107 14 2285 2817 461257858 461257326 2.010000e-78 303.0
11 TraesCS7B01G279700 chr7D 92.913 127 1 3 4298 4416 485030102 485030228 1.270000e-40 178.0
12 TraesCS7B01G279700 chr7A 89.249 2902 306 6 1 2899 553365262 553368160 0.000000e+00 3626.0
13 TraesCS7B01G279700 chr7A 92.003 1288 75 14 3008 4284 553368251 553369521 0.000000e+00 1783.0
14 TraesCS7B01G279700 chr7A 93.750 80 4 1 4298 4377 553369507 553369585 7.830000e-23 119.0
15 TraesCS7B01G279700 chr6D 77.148 1164 240 22 1745 2897 157441343 157440195 0.000000e+00 652.0
16 TraesCS7B01G279700 chr6B 77.442 993 202 19 1913 2897 280366746 280365768 1.390000e-159 573.0
17 TraesCS7B01G279700 chr6A 77.881 538 109 10 2285 2817 29615816 29616348 4.300000e-85 326.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G279700 chr7B 512707946 512712400 4454 False 8227.000000 8227 100.000000 1 4455 1 chr7B.!!$F1 4454
1 TraesCS7B01G279700 chr7B 512695386 512701063 5677 False 2142.800000 4399 93.911000 1 4388 3 chr7B.!!$F2 4387
2 TraesCS7B01G279700 chr7B 663116015 663119983 3968 True 2124.000000 3653 85.772500 1 3696 2 chr7B.!!$R2 3695
3 TraesCS7B01G279700 chr7B 483794704 483795229 525 True 307.000000 307 77.528000 2292 2817 1 chr7B.!!$R1 525
4 TraesCS7B01G279700 chr7D 485025851 485030228 4377 False 1964.666667 3725 92.543333 1 4416 3 chr7D.!!$F1 4415
5 TraesCS7B01G279700 chr7D 461247600 461248132 532 True 303.000000 303 77.222000 2285 2817 1 chr7D.!!$R1 532
6 TraesCS7B01G279700 chr7D 461257326 461257858 532 True 303.000000 303 77.264000 2285 2817 1 chr7D.!!$R2 532
7 TraesCS7B01G279700 chr7A 553365262 553369585 4323 False 1842.666667 3626 91.667333 1 4377 3 chr7A.!!$F1 4376
8 TraesCS7B01G279700 chr6D 157440195 157441343 1148 True 652.000000 652 77.148000 1745 2897 1 chr6D.!!$R1 1152
9 TraesCS7B01G279700 chr6B 280365768 280366746 978 True 573.000000 573 77.442000 1913 2897 1 chr6B.!!$R1 984
10 TraesCS7B01G279700 chr6A 29615816 29616348 532 False 326.000000 326 77.881000 2285 2817 1 chr6A.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.248296 GCTCTACCAGAACGAGCTCG 60.248 60.000 33.45 33.45 45.00 5.03 F
1168 1189 1.003580 TGGGAAGTCACATGAAGAGCC 59.996 52.381 0.00 0.00 0.00 4.70 F
1876 1897 0.841289 TCGGAACAACCTTCAAGGGT 59.159 50.000 8.75 0.00 40.58 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1539 1.208706 TGCCGAATGTTGGAGGGATA 58.791 50.0 0.00 0.0 0.0 2.59 R
2656 2679 0.969149 ATCTGCAGTCTCACACGGAA 59.031 50.0 14.67 0.0 0.0 4.30 R
3718 4019 0.755698 AGCCGGTATGATCCTCACGT 60.756 55.0 1.90 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 2.122797 CATGGTGCCGTGCCATCAT 61.123 57.895 0.00 0.00 44.25 2.45
331 332 0.248296 GCTCTACCAGAACGAGCTCG 60.248 60.000 33.45 33.45 45.00 5.03
385 386 6.665992 TGTACAATCTCAAGGTACTCAGTT 57.334 37.500 0.00 0.00 38.49 3.16
438 439 5.006386 CCTTTAGAGATCAGCAACCTTGTT 58.994 41.667 0.00 0.00 0.00 2.83
445 446 5.809001 AGATCAGCAACCTTGTTAATCTGA 58.191 37.500 0.00 0.00 34.21 3.27
459 460 6.902341 TGTTAATCTGAAGTTTCTGCACATC 58.098 36.000 0.00 0.00 0.00 3.06
520 521 7.483691 GCATAGGTAACCTTGTCAAATTAAACG 59.516 37.037 0.00 0.00 34.61 3.60
546 547 8.174422 GCACTCTCTCTAAGTTCAAATCAATTC 58.826 37.037 0.00 0.00 0.00 2.17
582 583 5.046304 CCCAAGTTCAGTAGGAAATCTCTCA 60.046 44.000 0.00 0.00 37.23 3.27
668 669 3.606595 TTCATCTCTCTCAGTGCTTGG 57.393 47.619 0.00 0.00 0.00 3.61
806 807 2.291741 GGAACCTCAACTTGCTTGACAG 59.708 50.000 0.00 0.00 33.65 3.51
812 813 2.355756 TCAACTTGCTTGACAGTCTTGC 59.644 45.455 1.31 6.75 33.65 4.01
879 880 1.949799 ACCTGCACTTCCTCTCTGAT 58.050 50.000 0.00 0.00 0.00 2.90
984 1005 7.716799 ACAAAGCAATTATAACCTCAATGGA 57.283 32.000 0.00 0.00 39.71 3.41
1027 1048 5.453567 AAACAACCTTCCAAATCTACAGC 57.546 39.130 0.00 0.00 0.00 4.40
1040 1061 5.876612 AATCTACAGCTCTTCTTTGCAAG 57.123 39.130 0.00 0.00 0.00 4.01
1044 1065 3.282021 ACAGCTCTTCTTTGCAAGTGAA 58.718 40.909 13.71 13.71 0.00 3.18
1048 1069 6.039717 ACAGCTCTTCTTTGCAAGTGAAAATA 59.960 34.615 14.80 6.17 0.00 1.40
1080 1101 3.519913 GTCCTATTCCTCCCTCTTTGTGT 59.480 47.826 0.00 0.00 0.00 3.72
1093 1114 4.818546 CCTCTTTGTGTAATGCCTCTATGG 59.181 45.833 0.00 0.00 39.35 2.74
1105 1126 5.840243 TGCCTCTATGGTTCAAATGATTG 57.160 39.130 0.00 0.00 38.35 2.67
1159 1180 1.619654 CAATTGCCTGGGAAGTCACA 58.380 50.000 6.80 0.00 0.00 3.58
1168 1189 1.003580 TGGGAAGTCACATGAAGAGCC 59.996 52.381 0.00 0.00 0.00 4.70
1185 1206 3.069729 AGAGCCTGTCCGTATTAACCATC 59.930 47.826 0.00 0.00 0.00 3.51
1189 1210 1.202557 TGTCCGTATTAACCATCGCCC 60.203 52.381 0.00 0.00 0.00 6.13
1190 1211 1.069668 GTCCGTATTAACCATCGCCCT 59.930 52.381 0.00 0.00 0.00 5.19
1197 1218 2.702592 TAACCATCGCCCTAAACCAG 57.297 50.000 0.00 0.00 0.00 4.00
1234 1255 3.068881 CCGACTGGGGCTTCTTGA 58.931 61.111 0.00 0.00 0.00 3.02
1264 1285 7.330700 GCCTAAGCAATTGTAGTAATTTGCAAA 59.669 33.333 15.44 15.44 39.53 3.68
1328 1349 2.427245 CGGTAGGCACCCTCTCCAG 61.427 68.421 0.00 0.00 42.43 3.86
1341 1362 5.300792 CACCCTCTCCAGAAATCTAGAGTAC 59.699 48.000 0.00 0.00 34.14 2.73
1417 1438 1.948834 TGACCAATCTGCACACACTTG 59.051 47.619 0.00 0.00 0.00 3.16
1455 1476 7.989947 TCATTTAGAGGGTACTATTCCAACT 57.010 36.000 0.00 0.00 0.00 3.16
1476 1497 2.528564 TCTCTTGGCAAAATGAAGGGG 58.471 47.619 0.00 0.00 0.00 4.79
1507 1528 9.927081 ATTTGTTAATCCTAGGAATGAATGACT 57.073 29.630 17.30 0.00 0.00 3.41
1515 1536 6.270927 TCCTAGGAATGAATGACTTATCAGGG 59.729 42.308 9.71 0.00 38.57 4.45
1518 1539 5.669447 AGGAATGAATGACTTATCAGGGTCT 59.331 40.000 0.00 0.00 38.57 3.85
1756 1777 8.383947 GGGATTTGCCTATAGAATTAGGTAACT 58.616 37.037 0.00 0.00 41.73 2.24
1833 1854 4.330056 TCCCTTGGAGAGTGCCAA 57.670 55.556 0.00 0.00 45.28 4.52
1876 1897 0.841289 TCGGAACAACCTTCAAGGGT 59.159 50.000 8.75 0.00 40.58 4.34
1897 1918 5.059161 GGTCAATTCCATCATCAATCGAGA 58.941 41.667 0.00 0.00 0.00 4.04
1980 2001 2.066393 CCTCGGGAGCATGGAAGGA 61.066 63.158 0.00 0.00 0.00 3.36
2031 2052 1.003718 GGAGGGTGAGGTTCCAACG 60.004 63.158 0.00 0.00 0.00 4.10
2241 2264 5.562506 TGTCGACATTCTACAGTAAGAGG 57.437 43.478 15.76 0.00 0.00 3.69
2247 2270 6.127703 CGACATTCTACAGTAAGAGGAGGAAA 60.128 42.308 0.00 0.00 0.00 3.13
2248 2271 6.937392 ACATTCTACAGTAAGAGGAGGAAAC 58.063 40.000 0.00 0.00 0.00 2.78
2368 2391 1.600636 CTTGGTGCCGGAAGCTTCA 60.601 57.895 27.02 5.07 44.23 3.02
2397 2420 5.649395 AGTGTACAAGGGAACAATGATGATG 59.351 40.000 0.00 0.00 0.00 3.07
2648 2671 5.533903 CCATGGAAGATGGTGAAAATAGGAG 59.466 44.000 5.56 0.00 34.56 3.69
2828 2851 4.616835 GCTTGCAAGGTTTCTACATCAAGG 60.617 45.833 27.10 0.00 32.65 3.61
2836 2859 4.187694 GTTTCTACATCAAGGCTCAGAGG 58.812 47.826 0.00 0.00 0.00 3.69
2839 2862 4.096681 TCTACATCAAGGCTCAGAGGAAA 58.903 43.478 8.30 0.00 0.00 3.13
2975 2999 8.076178 ACTTCACATTTTGATGCAACTACTTAC 58.924 33.333 0.00 0.00 33.51 2.34
2980 3004 9.243105 ACATTTTGATGCAACTACTTACCTTAT 57.757 29.630 0.00 0.00 0.00 1.73
3507 3805 2.084546 GTCAATAAGGACGGCAAGCTT 58.915 47.619 0.00 0.00 0.00 3.74
3755 4056 2.549778 GGCTGATCCCTCTGTAATCTGC 60.550 54.545 0.00 0.00 41.14 4.26
3760 4061 4.471025 TGATCCCTCTGTAATCTGCTCAAA 59.529 41.667 0.00 0.00 0.00 2.69
3781 4082 7.811282 TCAAACACCATGGACCTATATAACAT 58.189 34.615 21.47 0.00 0.00 2.71
3787 4088 6.495872 ACCATGGACCTATATAACATGTACGT 59.504 38.462 21.47 0.00 37.74 3.57
3788 4089 7.033791 CCATGGACCTATATAACATGTACGTC 58.966 42.308 5.56 0.00 37.74 4.34
3808 4109 1.486310 CTCCCTGCCTAACAGCATACA 59.514 52.381 0.00 0.00 45.78 2.29
3954 4257 1.399440 CACATCATTCCCTTCACGCAG 59.601 52.381 0.00 0.00 0.00 5.18
3974 4282 4.318404 GCAGTGCTTAGCTTATTCGCTTAG 60.318 45.833 8.18 0.00 41.30 2.18
4061 4369 2.964123 CGCAAATCACACGTGTAAACTG 59.036 45.455 22.90 16.76 0.00 3.16
4304 4613 2.185004 TTTTTGAGGGGAAGAGAGCG 57.815 50.000 0.00 0.00 0.00 5.03
4305 4614 0.324943 TTTTGAGGGGAAGAGAGCGG 59.675 55.000 0.00 0.00 0.00 5.52
4306 4615 0.544357 TTTGAGGGGAAGAGAGCGGA 60.544 55.000 0.00 0.00 0.00 5.54
4307 4616 0.325671 TTGAGGGGAAGAGAGCGGAT 60.326 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
331 332 2.224402 GCTCATGTGGTATCTCCCCTTC 60.224 54.545 0.00 0.00 34.77 3.46
364 365 7.578955 GCCTAAACTGAGTACCTTGAGATTGTA 60.579 40.741 0.00 0.00 0.00 2.41
385 386 4.072131 CCTGAAAGCTTGTTGTAGCCTAA 58.928 43.478 0.00 0.00 42.20 2.69
438 439 4.631377 CCGATGTGCAGAAACTTCAGATTA 59.369 41.667 0.00 0.00 0.00 1.75
445 446 2.948979 TGTTTCCGATGTGCAGAAACTT 59.051 40.909 21.85 0.00 0.00 2.66
459 460 3.334691 TCCTGTTAGCTCATTGTTTCCG 58.665 45.455 0.00 0.00 0.00 4.30
520 521 7.608308 ATTGATTTGAACTTAGAGAGAGTGC 57.392 36.000 0.00 0.00 0.00 4.40
546 547 4.223923 ACTGAACTTGGGATAGAACCAGAG 59.776 45.833 0.00 0.00 39.57 3.35
582 583 4.013050 GCAGAATAAGAAAGGCCAGTTCT 58.987 43.478 14.34 14.34 36.90 3.01
663 664 6.039717 TCAGGTCATTATTTGCTAATCCAAGC 59.960 38.462 0.00 0.00 43.08 4.01
668 669 6.767902 TCCTGTCAGGTCATTATTTGCTAATC 59.232 38.462 18.65 0.00 36.53 1.75
678 679 3.181451 GGATGCATCCTGTCAGGTCATTA 60.181 47.826 34.20 0.00 43.73 1.90
730 731 6.155221 TGGTTGTGCTGAAGATCTATAGAAGT 59.845 38.462 6.52 0.00 0.00 3.01
804 805 2.827800 TGAAGGACAGAGCAAGACTG 57.172 50.000 0.00 0.00 40.68 3.51
806 807 4.393371 GGTTATTGAAGGACAGAGCAAGAC 59.607 45.833 0.00 0.00 0.00 3.01
812 813 6.734104 CTGAAAGGTTATTGAAGGACAGAG 57.266 41.667 0.00 0.00 0.00 3.35
984 1005 6.043012 TGTTTCCCATGTCAAATGGAAAAGAT 59.957 34.615 11.66 0.00 45.59 2.40
1040 1061 9.750125 GAATAGGACCATGGAATTTATTTTCAC 57.250 33.333 21.47 2.22 0.00 3.18
1044 1065 7.730332 GGAGGAATAGGACCATGGAATTTATTT 59.270 37.037 21.47 2.81 0.00 1.40
1048 1069 4.140924 GGGAGGAATAGGACCATGGAATTT 60.141 45.833 21.47 4.31 0.00 1.82
1080 1101 7.779326 TCAATCATTTGAACCATAGAGGCATTA 59.221 33.333 0.00 0.00 38.90 1.90
1093 1114 5.034554 TGAACGAGCTCAATCATTTGAAC 57.965 39.130 15.40 0.00 41.22 3.18
1105 1126 4.142227 TGTTAGGGAGTTATGAACGAGCTC 60.142 45.833 2.73 2.73 36.23 4.09
1142 1163 1.355381 TCATGTGACTTCCCAGGCAAT 59.645 47.619 0.00 0.00 41.00 3.56
1149 1170 1.280421 AGGCTCTTCATGTGACTTCCC 59.720 52.381 0.00 0.00 0.00 3.97
1154 1175 1.731720 GGACAGGCTCTTCATGTGAC 58.268 55.000 0.00 0.00 40.16 3.67
1159 1180 4.443034 GGTTAATACGGACAGGCTCTTCAT 60.443 45.833 0.00 0.00 0.00 2.57
1168 1189 2.132762 GGCGATGGTTAATACGGACAG 58.867 52.381 0.00 0.00 0.00 3.51
1185 1206 1.401905 GCTTGAATCTGGTTTAGGGCG 59.598 52.381 0.00 0.00 0.00 6.13
1189 1210 5.437289 TGTGTTGCTTGAATCTGGTTTAG 57.563 39.130 0.00 0.00 0.00 1.85
1190 1211 5.592282 TCTTGTGTTGCTTGAATCTGGTTTA 59.408 36.000 0.00 0.00 0.00 2.01
1197 1218 3.248266 GGCATCTTGTGTTGCTTGAATC 58.752 45.455 0.00 0.00 38.54 2.52
1234 1255 8.408601 CAAATTACTACAATTGCTTAGGCTGAT 58.591 33.333 5.05 0.00 39.59 2.90
1264 1285 6.835488 AGCATGTTATCACCTAAATCCAACAT 59.165 34.615 0.00 0.00 35.99 2.71
1328 1349 9.535878 CTTCCATGTTAAGGTACTCTAGATTTC 57.464 37.037 0.00 0.00 38.49 2.17
1341 1362 6.949352 ATGCTGTTATCTTCCATGTTAAGG 57.051 37.500 5.49 0.00 0.00 2.69
1417 1438 8.322091 ACCCTCTAAATGATTACCATATAGCAC 58.678 37.037 0.00 0.00 34.45 4.40
1419 1440 9.819267 GTACCCTCTAAATGATTACCATATAGC 57.181 37.037 0.00 0.00 34.45 2.97
1455 1476 2.899256 CCCCTTCATTTTGCCAAGAGAA 59.101 45.455 0.00 0.00 0.00 2.87
1515 1536 2.807108 GCCGAATGTTGGAGGGATAGAC 60.807 54.545 0.00 0.00 0.00 2.59
1518 1539 1.208706 TGCCGAATGTTGGAGGGATA 58.791 50.000 0.00 0.00 0.00 2.59
1833 1854 6.882656 AGATACATTCAGATACTGCAGTGTT 58.117 36.000 29.57 16.42 0.00 3.32
1876 1897 6.585416 TCTTCTCGATTGATGATGGAATTGA 58.415 36.000 0.00 0.00 0.00 2.57
1897 1918 4.801164 AGCATCAATAGGGCTTTCATCTT 58.199 39.130 0.00 0.00 33.21 2.40
1980 2001 4.090761 TGAGAGATTCAAACCAGCAAGT 57.909 40.909 0.00 0.00 31.34 3.16
2031 2052 1.612463 GCATTGCTGAAGATCCCATCC 59.388 52.381 0.16 0.00 0.00 3.51
2064 2085 4.209538 CATCATTTCCCATAACTGAGGCA 58.790 43.478 0.00 0.00 0.00 4.75
2241 2264 3.798878 GCTTGTTTGCTTTCAGTTTCCTC 59.201 43.478 0.00 0.00 0.00 3.71
2247 2270 3.924144 TGTTTGCTTGTTTGCTTTCAGT 58.076 36.364 0.00 0.00 0.00 3.41
2248 2271 4.567558 TGATGTTTGCTTGTTTGCTTTCAG 59.432 37.500 0.00 0.00 0.00 3.02
2368 2391 2.047061 TGTTCCCTTGTACACTGAGCT 58.953 47.619 0.00 0.00 0.00 4.09
2397 2420 3.550437 ATCACTACCTGCTGGTCATTC 57.450 47.619 19.71 0.00 44.78 2.67
2648 2671 3.921021 CAGTCTCACACGGAAATGTAGTC 59.079 47.826 0.00 0.00 0.00 2.59
2656 2679 0.969149 ATCTGCAGTCTCACACGGAA 59.031 50.000 14.67 0.00 0.00 4.30
2680 2703 6.828502 TTCGAGTGATAATGCTACATCAAC 57.171 37.500 0.00 0.00 33.15 3.18
2828 2851 3.748568 CCAACTAGTTGTTTCCTCTGAGC 59.251 47.826 29.05 0.00 38.85 4.26
2836 2859 4.846779 TTGATGCCCAACTAGTTGTTTC 57.153 40.909 29.05 20.19 38.85 2.78
2839 2862 4.012374 CTCATTGATGCCCAACTAGTTGT 58.988 43.478 29.05 14.38 38.85 3.32
3008 3101 5.385198 AGCAAACTGAAATGGAGAGGTTAA 58.615 37.500 0.00 0.00 0.00 2.01
3015 3108 4.778534 ATGTGAGCAAACTGAAATGGAG 57.221 40.909 0.00 0.00 0.00 3.86
3082 3365 3.066760 CGTAGCTGTAGACATCACCATGA 59.933 47.826 0.00 0.00 33.72 3.07
3373 3656 0.768221 ACTCTTTCAGAGCACCCCCA 60.768 55.000 0.42 0.00 46.12 4.96
3507 3805 2.241941 TGCTGGAGCCTATTGAAATGGA 59.758 45.455 0.00 0.00 41.18 3.41
3557 3856 8.087750 ACAACAAATATTCCACCAAACACATAG 58.912 33.333 0.00 0.00 0.00 2.23
3567 3866 5.040635 CGGCAATACAACAAATATTCCACC 58.959 41.667 0.00 0.00 0.00 4.61
3718 4019 0.755698 AGCCGGTATGATCCTCACGT 60.756 55.000 1.90 0.00 0.00 4.49
3742 4043 3.686726 GGTGTTTGAGCAGATTACAGAGG 59.313 47.826 0.00 0.00 0.00 3.69
3755 4056 7.279615 TGTTATATAGGTCCATGGTGTTTGAG 58.720 38.462 12.58 0.00 0.00 3.02
3760 4061 6.763715 ACATGTTATATAGGTCCATGGTGT 57.236 37.500 12.58 0.45 37.74 4.16
3781 4082 1.180029 GTTAGGCAGGGAGACGTACA 58.820 55.000 0.00 0.00 0.00 2.90
3787 4088 1.762957 GTATGCTGTTAGGCAGGGAGA 59.237 52.381 0.00 0.00 45.75 3.71
3788 4089 1.486310 TGTATGCTGTTAGGCAGGGAG 59.514 52.381 0.00 0.00 45.75 4.30
3808 4109 3.946242 AAAAAGTGGGGCTGGAAGT 57.054 47.368 0.00 0.00 35.30 3.01
4004 4312 3.534721 GGGAAGAAGAACCCAGTCG 57.465 57.895 0.00 0.00 44.96 4.18
4061 4369 1.069204 TCCATCTCAGCGATTAGTGCC 59.931 52.381 0.00 0.00 0.00 5.01
4285 4594 1.271379 CCGCTCTCTTCCCCTCAAAAA 60.271 52.381 0.00 0.00 0.00 1.94
4286 4595 0.324943 CCGCTCTCTTCCCCTCAAAA 59.675 55.000 0.00 0.00 0.00 2.44
4287 4596 0.544357 TCCGCTCTCTTCCCCTCAAA 60.544 55.000 0.00 0.00 0.00 2.69
4288 4597 0.325671 ATCCGCTCTCTTCCCCTCAA 60.326 55.000 0.00 0.00 0.00 3.02
4289 4598 1.045350 CATCCGCTCTCTTCCCCTCA 61.045 60.000 0.00 0.00 0.00 3.86
4290 4599 1.045911 ACATCCGCTCTCTTCCCCTC 61.046 60.000 0.00 0.00 0.00 4.30
4291 4600 0.261991 TACATCCGCTCTCTTCCCCT 59.738 55.000 0.00 0.00 0.00 4.79
4292 4601 1.343069 ATACATCCGCTCTCTTCCCC 58.657 55.000 0.00 0.00 0.00 4.81
4293 4602 2.094442 GCTATACATCCGCTCTCTTCCC 60.094 54.545 0.00 0.00 0.00 3.97
4294 4603 2.558795 TGCTATACATCCGCTCTCTTCC 59.441 50.000 0.00 0.00 0.00 3.46
4295 4604 3.366883 CCTGCTATACATCCGCTCTCTTC 60.367 52.174 0.00 0.00 0.00 2.87
4296 4605 2.560542 CCTGCTATACATCCGCTCTCTT 59.439 50.000 0.00 0.00 0.00 2.85
4297 4606 2.166829 CCTGCTATACATCCGCTCTCT 58.833 52.381 0.00 0.00 0.00 3.10
4298 4607 1.403514 GCCTGCTATACATCCGCTCTC 60.404 57.143 0.00 0.00 0.00 3.20
4299 4608 0.605589 GCCTGCTATACATCCGCTCT 59.394 55.000 0.00 0.00 0.00 4.09
4300 4609 0.605589 AGCCTGCTATACATCCGCTC 59.394 55.000 0.00 0.00 0.00 5.03
4301 4610 0.605589 GAGCCTGCTATACATCCGCT 59.394 55.000 0.00 0.00 0.00 5.52
4302 4611 0.734253 CGAGCCTGCTATACATCCGC 60.734 60.000 0.00 0.00 0.00 5.54
4303 4612 0.598562 ACGAGCCTGCTATACATCCG 59.401 55.000 0.00 0.00 0.00 4.18
4304 4613 1.937108 GCACGAGCCTGCTATACATCC 60.937 57.143 0.00 0.00 34.06 3.51
4305 4614 1.000283 AGCACGAGCCTGCTATACATC 60.000 52.381 0.00 0.00 46.03 3.06
4306 4615 1.043816 AGCACGAGCCTGCTATACAT 58.956 50.000 0.00 0.00 46.03 2.29
4307 4616 2.504920 AGCACGAGCCTGCTATACA 58.495 52.632 0.00 0.00 46.03 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.