Multiple sequence alignment - TraesCS7B01G279500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G279500 chr7B 100.000 5420 0 0 1 5420 512359156 512353737 0.000000e+00 10009.0
1 TraesCS7B01G279500 chr7A 91.977 5509 280 72 1 5420 553235003 553229568 0.000000e+00 7576.0
2 TraesCS7B01G279500 chr7D 91.120 4989 253 90 1 4897 484929608 484924718 0.000000e+00 6584.0
3 TraesCS7B01G279500 chr7D 83.547 547 44 21 4889 5420 484924355 484923840 2.290000e-128 470.0
4 TraesCS7B01G279500 chr1A 89.062 64 5 2 99 162 30285644 30285583 1.620000e-10 78.7
5 TraesCS7B01G279500 chr6B 83.333 78 11 2 2653 2729 278674128 278674052 2.710000e-08 71.3
6 TraesCS7B01G279500 chr6A 89.583 48 3 2 135 180 563740515 563740562 5.860000e-05 60.2
7 TraesCS7B01G279500 chr6A 100.000 28 0 0 573 600 278630368 278630395 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G279500 chr7B 512353737 512359156 5419 True 10009 10009 100.0000 1 5420 1 chr7B.!!$R1 5419
1 TraesCS7B01G279500 chr7A 553229568 553235003 5435 True 7576 7576 91.9770 1 5420 1 chr7A.!!$R1 5419
2 TraesCS7B01G279500 chr7D 484923840 484929608 5768 True 3527 6584 87.3335 1 5420 2 chr7D.!!$R1 5419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 110 0.106335 TTTTACGGCGTCCCTTGTGA 59.894 50.000 19.21 0.0 0.00 3.58 F
744 800 0.251077 CTGCTGTTCCTTTGCCTCCT 60.251 55.000 0.00 0.0 0.00 3.69 F
783 839 0.465705 GTTCTCCATGGCCGATCTCA 59.534 55.000 6.96 0.0 0.00 3.27 F
1435 1491 1.542915 CCGAGTTCTCCGTCCACTAAA 59.457 52.381 0.00 0.0 0.00 1.85 F
2045 2111 0.390340 TTTTTGTTTGCTGCCGTGCA 60.390 45.000 0.00 0.0 41.65 4.57 F
2902 2983 0.451783 CACCGATGCCCAGCTTTTAC 59.548 55.000 0.00 0.0 0.00 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1052 1108 1.250840 AAATTTCTGGCTCGCCCCAC 61.251 55.000 5.33 0.0 34.56 4.61 R
1597 1656 1.881973 CCGTTGCATCCTCATATTGGG 59.118 52.381 0.00 0.0 0.00 4.12 R
1974 2039 2.164219 TGAATGCAATCCTTTTCGGCTC 59.836 45.455 0.00 0.0 0.00 4.70 R
3286 3390 0.250295 CTCCCGGCTGTCTTTTGTGA 60.250 55.000 0.00 0.0 0.00 3.58 R
3543 3656 1.003118 GTTGGTCACCCATGTGCTAGA 59.997 52.381 0.00 0.0 41.49 2.43 R
4432 4558 0.108424 CAGCTTTCCGAGAGACTGGG 60.108 60.000 0.00 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 70 0.794473 GCAAATTCAGCCAAGCAAGC 59.206 50.000 0.00 0.00 0.00 4.01
69 74 1.624336 ATTCAGCCAAGCAAGCAGAA 58.376 45.000 3.62 3.62 39.61 3.02
70 75 0.956633 TTCAGCCAAGCAAGCAGAAG 59.043 50.000 0.00 0.00 31.71 2.85
72 77 0.892358 CAGCCAAGCAAGCAGAAGGA 60.892 55.000 0.00 0.00 0.00 3.36
73 78 0.608582 AGCCAAGCAAGCAGAAGGAG 60.609 55.000 0.00 0.00 0.00 3.69
74 79 0.607489 GCCAAGCAAGCAGAAGGAGA 60.607 55.000 0.00 0.00 0.00 3.71
75 80 1.954258 GCCAAGCAAGCAGAAGGAGAT 60.954 52.381 0.00 0.00 0.00 2.75
76 81 1.743958 CCAAGCAAGCAGAAGGAGATG 59.256 52.381 0.00 0.00 0.00 2.90
77 82 1.743958 CAAGCAAGCAGAAGGAGATGG 59.256 52.381 0.00 0.00 0.00 3.51
79 84 1.632409 AGCAAGCAGAAGGAGATGGAA 59.368 47.619 0.00 0.00 0.00 3.53
80 85 1.742268 GCAAGCAGAAGGAGATGGAAC 59.258 52.381 0.00 0.00 0.00 3.62
81 86 2.617532 GCAAGCAGAAGGAGATGGAACT 60.618 50.000 0.00 0.00 0.00 3.01
82 87 3.683802 CAAGCAGAAGGAGATGGAACTT 58.316 45.455 0.00 0.00 0.00 2.66
83 88 3.625649 AGCAGAAGGAGATGGAACTTC 57.374 47.619 0.00 0.00 40.59 3.01
86 91 4.042684 AGCAGAAGGAGATGGAACTTCTTT 59.957 41.667 3.62 0.00 46.32 2.52
105 110 0.106335 TTTTACGGCGTCCCTTGTGA 59.894 50.000 19.21 0.00 0.00 3.58
106 111 0.322322 TTTACGGCGTCCCTTGTGAT 59.678 50.000 19.21 0.00 0.00 3.06
108 113 1.252215 TACGGCGTCCCTTGTGATGA 61.252 55.000 19.21 0.00 0.00 2.92
112 117 0.521735 GCGTCCCTTGTGATGAAACC 59.478 55.000 0.00 0.00 0.00 3.27
115 120 2.031157 CGTCCCTTGTGATGAAACCAAC 60.031 50.000 0.00 0.00 0.00 3.77
122 127 3.570540 TGTGATGAAACCAACCCATCAA 58.429 40.909 0.00 0.00 45.41 2.57
127 132 4.664150 TGAAACCAACCCATCAAAGTTC 57.336 40.909 0.00 0.00 0.00 3.01
132 137 3.636764 ACCAACCCATCAAAGTTCAAGTC 59.363 43.478 0.00 0.00 0.00 3.01
133 138 3.636300 CCAACCCATCAAAGTTCAAGTCA 59.364 43.478 0.00 0.00 0.00 3.41
151 158 3.898123 AGTCATAGACTTGACACTGGTGT 59.102 43.478 6.04 6.04 46.81 4.16
219 229 3.526931 TGGGAGAAGATTCATGTCGAC 57.473 47.619 9.11 9.11 0.00 4.20
235 245 2.216046 TCGACTACGAGACACTTGTGT 58.784 47.619 6.06 6.06 43.81 3.72
267 281 6.196353 CGTCAATTAAATTTTATGTGGGCTCG 59.804 38.462 0.00 0.00 0.00 5.03
275 289 1.855295 TATGTGGGCTCGGTAACTCA 58.145 50.000 0.00 0.00 0.00 3.41
277 291 0.759959 TGTGGGCTCGGTAACTCAAA 59.240 50.000 0.00 0.00 0.00 2.69
278 292 1.349688 TGTGGGCTCGGTAACTCAAAT 59.650 47.619 0.00 0.00 0.00 2.32
279 293 1.737793 GTGGGCTCGGTAACTCAAATG 59.262 52.381 0.00 0.00 0.00 2.32
287 301 4.710324 TCGGTAACTCAAATGAGGTGTTT 58.290 39.130 11.18 0.87 43.02 2.83
294 308 6.391227 ACTCAAATGAGGTGTTTGTAAAGG 57.609 37.500 14.50 0.00 46.13 3.11
298 312 7.057894 TCAAATGAGGTGTTTGTAAAGGTAGT 58.942 34.615 0.00 0.00 37.70 2.73
304 318 4.637091 GGTGTTTGTAAAGGTAGTGTGTGT 59.363 41.667 0.00 0.00 0.00 3.72
305 319 5.124297 GGTGTTTGTAAAGGTAGTGTGTGTT 59.876 40.000 0.00 0.00 0.00 3.32
306 320 6.253013 GTGTTTGTAAAGGTAGTGTGTGTTC 58.747 40.000 0.00 0.00 0.00 3.18
307 321 6.093082 GTGTTTGTAAAGGTAGTGTGTGTTCT 59.907 38.462 0.00 0.00 0.00 3.01
310 324 8.333186 GTTTGTAAAGGTAGTGTGTGTTCTTAG 58.667 37.037 0.00 0.00 0.00 2.18
311 325 7.350744 TGTAAAGGTAGTGTGTGTTCTTAGA 57.649 36.000 0.00 0.00 0.00 2.10
312 326 7.431249 TGTAAAGGTAGTGTGTGTTCTTAGAG 58.569 38.462 0.00 0.00 0.00 2.43
317 338 2.368875 AGTGTGTGTTCTTAGAGGTGGG 59.631 50.000 0.00 0.00 0.00 4.61
336 357 1.134521 GGGAGTGTATGTGCCGATTGA 60.135 52.381 0.00 0.00 0.00 2.57
543 570 4.803908 CCGGCTTGCCCTCCTTCC 62.804 72.222 6.02 0.00 0.00 3.46
544 571 3.721706 CGGCTTGCCCTCCTTCCT 61.722 66.667 6.02 0.00 0.00 3.36
545 572 2.273776 GGCTTGCCCTCCTTCCTC 59.726 66.667 0.00 0.00 0.00 3.71
546 573 2.273776 GCTTGCCCTCCTTCCTCC 59.726 66.667 0.00 0.00 0.00 4.30
547 574 3.002371 CTTGCCCTCCTTCCTCCC 58.998 66.667 0.00 0.00 0.00 4.30
548 575 2.614013 TTGCCCTCCTTCCTCCCC 60.614 66.667 0.00 0.00 0.00 4.81
549 576 3.515383 TTGCCCTCCTTCCTCCCCA 62.515 63.158 0.00 0.00 0.00 4.96
550 577 3.093172 GCCCTCCTTCCTCCCCAG 61.093 72.222 0.00 0.00 0.00 4.45
551 578 3.093172 CCCTCCTTCCTCCCCAGC 61.093 72.222 0.00 0.00 0.00 4.85
552 579 2.285668 CCTCCTTCCTCCCCAGCA 60.286 66.667 0.00 0.00 0.00 4.41
553 580 2.373707 CCTCCTTCCTCCCCAGCAG 61.374 68.421 0.00 0.00 0.00 4.24
554 581 1.614824 CTCCTTCCTCCCCAGCAGT 60.615 63.158 0.00 0.00 0.00 4.40
715 771 1.383523 CTGGTAAGCAAAGCCCTAGC 58.616 55.000 0.00 0.00 40.32 3.42
718 774 0.727398 GTAAGCAAAGCCCTAGCACG 59.273 55.000 0.00 0.00 43.56 5.34
726 782 2.261671 CCCTAGCACGCGTTGACT 59.738 61.111 10.22 10.48 0.00 3.41
739 795 1.597937 CGTTGACTGCTGTTCCTTTGC 60.598 52.381 0.00 0.00 0.00 3.68
744 800 0.251077 CTGCTGTTCCTTTGCCTCCT 60.251 55.000 0.00 0.00 0.00 3.69
783 839 0.465705 GTTCTCCATGGCCGATCTCA 59.534 55.000 6.96 0.00 0.00 3.27
893 949 4.445545 CTTGCCGCGGCGAGTTTC 62.446 66.667 45.56 22.36 45.14 2.78
960 1016 5.596845 GCCTTTGTTGTTTCTGATAAACCA 58.403 37.500 0.00 0.00 0.00 3.67
1435 1491 1.542915 CCGAGTTCTCCGTCCACTAAA 59.457 52.381 0.00 0.00 0.00 1.85
1514 1570 6.371548 TGGTGATGCTGATGTTAAGAAAGTAC 59.628 38.462 0.00 0.00 0.00 2.73
1523 1579 9.530129 CTGATGTTAAGAAAGTACGTTCATTTC 57.470 33.333 21.18 9.76 33.97 2.17
1577 1636 7.389803 TGCATACACATTTTTATAGTGCTGT 57.610 32.000 0.00 0.00 36.76 4.40
1597 1656 5.556947 GCTGTAATGCAAAACTCTTTGTTGC 60.557 40.000 0.00 0.76 46.21 4.17
1679 1738 3.218453 TGTTTTGATTCAGAAGGCGGAA 58.782 40.909 0.00 0.00 32.86 4.30
1715 1774 3.173965 ACCAGTTGCTAAGGAGAGCTTA 58.826 45.455 0.00 0.00 43.27 3.09
1716 1775 3.055747 ACCAGTTGCTAAGGAGAGCTTAC 60.056 47.826 0.00 0.00 43.27 2.34
1719 1778 1.848652 TGCTAAGGAGAGCTTACCGT 58.151 50.000 0.00 0.00 43.27 4.83
1741 1800 5.324697 GTTCGAGGATTCAAAGTATGTTGC 58.675 41.667 0.00 0.00 0.00 4.17
1834 1896 3.632145 CCCAATTATGGTAGGTTGCACTC 59.368 47.826 0.00 0.00 46.01 3.51
1974 2039 3.126831 GTCTGATCCTCAAACTATGCGG 58.873 50.000 0.00 0.00 35.08 5.69
2021 2087 8.911918 TGCTTAGTGTCCTTTTATTTGTTAGA 57.088 30.769 0.00 0.00 0.00 2.10
2045 2111 0.390340 TTTTTGTTTGCTGCCGTGCA 60.390 45.000 0.00 0.00 41.65 4.57
2084 2150 6.199937 AGTGATTCTTGTTGCCATATTGAC 57.800 37.500 0.00 0.00 0.00 3.18
2130 2196 6.649155 TGCATCTATAAAACCTGAAGCACTA 58.351 36.000 0.00 0.00 29.99 2.74
2172 2238 4.327680 ACTGTCATCTTTAGCCTTTGGAC 58.672 43.478 0.00 0.00 0.00 4.02
2320 2400 7.065204 CACAAGTCTAGCTAATTCCTTTCCTTC 59.935 40.741 0.00 0.00 0.00 3.46
2325 2405 8.793592 GTCTAGCTAATTCCTTTCCTTCAAAAA 58.206 33.333 0.00 0.00 0.00 1.94
2433 2513 7.032598 TCAAATACAGGGAGAAGAGGAAAAT 57.967 36.000 0.00 0.00 0.00 1.82
2458 2538 3.746492 AGAAAGCATCTAACCAACGTGTC 59.254 43.478 0.00 0.00 36.32 3.67
2902 2983 0.451783 CACCGATGCCCAGCTTTTAC 59.548 55.000 0.00 0.00 0.00 2.01
2961 3042 2.286523 CCGTCTTGACCCCTGCTCT 61.287 63.158 0.00 0.00 0.00 4.09
2996 3078 4.509600 CCCTTCTATTCTGTCAAGCGAATC 59.490 45.833 0.00 0.00 32.53 2.52
3064 3146 4.497473 TTTGCAACCTGTATAACTGTGC 57.503 40.909 0.00 0.00 0.00 4.57
3071 3153 2.096496 CCTGTATAACTGTGCAAGCAGC 59.904 50.000 4.32 0.00 45.96 5.25
3201 3286 9.461312 ACTTGGATTACATAAGAATAACTTGCA 57.539 29.630 0.00 0.00 39.38 4.08
3269 3373 5.555017 CCTTGCTGGTAGCTTCATGTATAT 58.445 41.667 0.00 0.00 42.97 0.86
3345 3450 4.164204 GCTAATCAGGGAGAGGGTTAGAT 58.836 47.826 0.00 0.00 0.00 1.98
3359 3464 3.369576 GGGTTAGATGAAGTGGACAGGAC 60.370 52.174 0.00 0.00 0.00 3.85
3363 3468 4.744795 AGATGAAGTGGACAGGACATAC 57.255 45.455 0.00 0.00 0.00 2.39
3367 3480 3.006859 TGAAGTGGACAGGACATACACTG 59.993 47.826 0.00 0.00 41.15 3.66
3379 3492 6.377429 CAGGACATACACTGTAGTTCTTCCTA 59.623 42.308 0.00 0.00 38.54 2.94
3385 3498 9.570488 CATACACTGTAGTTCTTCCTACTTAAC 57.430 37.037 0.00 0.00 38.49 2.01
3502 3615 6.982852 TGAAGCTAAGGGTTATCTTATCTCG 58.017 40.000 0.00 0.00 32.93 4.04
3573 3686 1.234615 GGTGACCAACCCACATCACG 61.235 60.000 0.00 0.00 44.02 4.35
3652 3765 6.052405 TCTATTTGCAGCCAATTTTTCCAT 57.948 33.333 0.00 0.00 0.00 3.41
3711 3824 5.407407 ACTGTAGGTGATGGTTACTTCAG 57.593 43.478 0.00 0.00 32.18 3.02
3822 3937 3.548745 TCCATGTCTCTTGCCACTATG 57.451 47.619 0.00 0.00 0.00 2.23
3833 3948 6.426937 TCTCTTGCCACTATGTTTGAGTAAAC 59.573 38.462 0.00 0.00 45.04 2.01
3893 4010 0.865111 TTCGTGCAAGTTGACCATCG 59.135 50.000 7.16 3.49 0.00 3.84
3941 4058 5.009854 ACAGTGTTTGAAAAATGGACCAG 57.990 39.130 0.00 0.00 0.00 4.00
3943 4060 5.046663 ACAGTGTTTGAAAAATGGACCAGTT 60.047 36.000 0.16 0.16 0.00 3.16
3974 4091 3.697542 GGTACACAGGTGGTTCAAGTTTT 59.302 43.478 4.24 0.00 34.19 2.43
3983 4100 4.583073 GGTGGTTCAAGTTTTCTACCATGT 59.417 41.667 0.00 0.00 38.06 3.21
4219 4337 4.785453 GGGCCTCCCAGAACAGCG 62.785 72.222 0.84 0.00 44.65 5.18
4225 4343 2.032528 CCCAGAACAGCGCCAAGA 59.967 61.111 2.29 0.00 0.00 3.02
4226 4344 2.328099 CCCAGAACAGCGCCAAGAC 61.328 63.158 2.29 0.00 0.00 3.01
4227 4345 1.597854 CCAGAACAGCGCCAAGACA 60.598 57.895 2.29 0.00 0.00 3.41
4356 4474 4.410492 AGAAATTAGCAAGTCAACTGCG 57.590 40.909 0.00 0.00 0.00 5.18
4411 4535 1.448540 CCAGACGACCATGTGCTCC 60.449 63.158 0.00 0.00 0.00 4.70
4431 4557 2.092211 CCACGCATAGAAAACAGTCGAC 59.908 50.000 7.70 7.70 0.00 4.20
4432 4558 2.092211 CACGCATAGAAAACAGTCGACC 59.908 50.000 13.01 0.00 0.00 4.79
4440 4566 0.680061 AAACAGTCGACCCCAGTCTC 59.320 55.000 13.01 0.00 41.16 3.36
4475 4601 1.048160 TCATGCCTCAGCGTCCCATA 61.048 55.000 0.00 0.00 44.31 2.74
4501 4627 7.151308 TCTGCATTTTTGTTATTTGGGTAGTG 58.849 34.615 0.00 0.00 0.00 2.74
4507 4633 9.758651 ATTTTTGTTATTTGGGTAGTGAACTTC 57.241 29.630 0.00 0.00 0.00 3.01
4539 4665 5.611796 TCATGTGCTTGAATTAGTGTGAC 57.388 39.130 0.00 0.00 0.00 3.67
4679 4805 3.836562 ACTACCTTGTATTTCCAGGTCGT 59.163 43.478 0.00 0.00 34.38 4.34
4703 4829 2.872337 CTTCTTTTCCCCGCATGCGC 62.872 60.000 34.00 0.00 38.24 6.09
4711 4837 3.880846 CCGCATGCGCTTTCCCTC 61.881 66.667 34.00 0.00 38.24 4.30
4825 4952 0.035881 CTTCTGCTGAACTGCTGGGA 59.964 55.000 1.33 2.36 33.58 4.37
4835 4962 0.110486 ACTGCTGGGACAATCGGTTT 59.890 50.000 0.00 0.00 38.70 3.27
4841 4968 0.676736 GGGACAATCGGTTTTGGCAA 59.323 50.000 0.00 0.00 36.27 4.52
4884 5011 5.694910 GGTACATACACTACATACACCATGC 59.305 44.000 0.00 0.00 38.29 4.06
4932 5430 3.676049 GCACAGCAAAACCTTATTAGGCC 60.676 47.826 0.00 0.00 46.22 5.19
4979 5482 1.206371 TCCTACCAACCTTAGAAGCGC 59.794 52.381 0.00 0.00 0.00 5.92
4994 5515 1.669115 GCGCACTGCTCTTTCCAGA 60.669 57.895 0.30 0.00 41.73 3.86
4995 5516 1.023513 GCGCACTGCTCTTTCCAGAT 61.024 55.000 0.30 0.00 41.73 2.90
4996 5517 1.446907 CGCACTGCTCTTTCCAGATT 58.553 50.000 0.00 0.00 34.47 2.40
4997 5518 1.396301 CGCACTGCTCTTTCCAGATTC 59.604 52.381 0.00 0.00 34.47 2.52
4998 5519 2.430465 GCACTGCTCTTTCCAGATTCA 58.570 47.619 0.00 0.00 34.47 2.57
4999 5520 3.015327 GCACTGCTCTTTCCAGATTCAT 58.985 45.455 0.00 0.00 34.47 2.57
5000 5521 3.442977 GCACTGCTCTTTCCAGATTCATT 59.557 43.478 0.00 0.00 34.47 2.57
5001 5522 4.082354 GCACTGCTCTTTCCAGATTCATTT 60.082 41.667 0.00 0.00 34.47 2.32
5002 5523 5.566230 GCACTGCTCTTTCCAGATTCATTTT 60.566 40.000 0.00 0.00 34.47 1.82
5003 5524 5.862323 CACTGCTCTTTCCAGATTCATTTTG 59.138 40.000 0.00 0.00 34.47 2.44
5004 5525 4.813027 TGCTCTTTCCAGATTCATTTTGC 58.187 39.130 0.00 0.00 0.00 3.68
5005 5526 4.281435 TGCTCTTTCCAGATTCATTTTGCA 59.719 37.500 0.00 0.00 0.00 4.08
5006 5527 4.624452 GCTCTTTCCAGATTCATTTTGCAC 59.376 41.667 0.00 0.00 0.00 4.57
5007 5528 5.775686 CTCTTTCCAGATTCATTTTGCACA 58.224 37.500 0.00 0.00 0.00 4.57
5008 5529 5.531634 TCTTTCCAGATTCATTTTGCACAC 58.468 37.500 0.00 0.00 0.00 3.82
5009 5530 5.302568 TCTTTCCAGATTCATTTTGCACACT 59.697 36.000 0.00 0.00 0.00 3.55
5010 5531 6.489700 TCTTTCCAGATTCATTTTGCACACTA 59.510 34.615 0.00 0.00 0.00 2.74
5011 5532 5.627499 TCCAGATTCATTTTGCACACTAC 57.373 39.130 0.00 0.00 0.00 2.73
5012 5533 5.069318 TCCAGATTCATTTTGCACACTACA 58.931 37.500 0.00 0.00 0.00 2.74
5013 5534 5.711506 TCCAGATTCATTTTGCACACTACAT 59.288 36.000 0.00 0.00 0.00 2.29
5014 5535 6.883756 TCCAGATTCATTTTGCACACTACATA 59.116 34.615 0.00 0.00 0.00 2.29
5015 5536 7.557358 TCCAGATTCATTTTGCACACTACATAT 59.443 33.333 0.00 0.00 0.00 1.78
5016 5537 8.192774 CCAGATTCATTTTGCACACTACATATT 58.807 33.333 0.00 0.00 0.00 1.28
5036 5557 7.340999 ACATATTTAGCCGGACTTGGTTTATTT 59.659 33.333 5.05 0.00 0.00 1.40
5044 5565 6.623549 GCCGGACTTGGTTTATTTAGTTTACC 60.624 42.308 5.05 0.00 0.00 2.85
5051 5575 6.007703 TGGTTTATTTAGTTTACCAGCTGCT 58.992 36.000 8.66 0.00 34.13 4.24
5158 5682 3.568538 CAGATGCAGTTTGTTTACTGGC 58.431 45.455 5.97 0.00 44.50 4.85
5366 5891 0.323629 ATGCCAAGCAAGCAAGCAAT 59.676 45.000 7.55 0.00 44.83 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 2.083774 CTTGGCTGAATTTGCTACGGA 58.916 47.619 4.75 0.00 0.00 4.69
43 45 3.248266 CTTGCTTGGCTGAATTTGCTAC 58.752 45.455 4.75 0.00 0.00 3.58
45 47 1.607251 GCTTGCTTGGCTGAATTTGCT 60.607 47.619 4.75 0.00 0.00 3.91
49 51 1.624336 TCTGCTTGCTTGGCTGAATT 58.376 45.000 0.00 0.00 35.37 2.17
65 70 6.890979 AAAAAGAAGTTCCATCTCCTTCTG 57.109 37.500 0.00 0.00 43.01 3.02
86 91 0.106335 TCACAAGGGACGCCGTAAAA 59.894 50.000 0.00 0.00 0.00 1.52
90 95 2.047274 CATCACAAGGGACGCCGT 60.047 61.111 0.00 0.00 0.00 5.68
97 102 1.618343 GGGTTGGTTTCATCACAAGGG 59.382 52.381 0.00 0.00 0.00 3.95
98 103 2.315176 TGGGTTGGTTTCATCACAAGG 58.685 47.619 0.00 0.00 0.00 3.61
102 107 4.039124 ACTTTGATGGGTTGGTTTCATCAC 59.961 41.667 4.93 0.00 44.47 3.06
105 110 4.653341 TGAACTTTGATGGGTTGGTTTCAT 59.347 37.500 0.00 0.00 0.00 2.57
106 111 4.026744 TGAACTTTGATGGGTTGGTTTCA 58.973 39.130 0.00 0.00 0.00 2.69
108 113 4.469586 ACTTGAACTTTGATGGGTTGGTTT 59.530 37.500 0.00 0.00 0.00 3.27
112 117 4.916983 TGACTTGAACTTTGATGGGTTG 57.083 40.909 0.00 0.00 0.00 3.77
115 120 6.176183 AGTCTATGACTTGAACTTTGATGGG 58.824 40.000 0.00 0.00 40.28 4.00
132 137 4.319766 GCAAACACCAGTGTCAAGTCTATG 60.320 45.833 3.49 0.00 44.13 2.23
133 138 3.815401 GCAAACACCAGTGTCAAGTCTAT 59.185 43.478 3.49 0.00 44.13 1.98
180 188 8.378172 TCTCCCATTTAACGAACATCATTATC 57.622 34.615 0.00 0.00 0.00 1.75
182 190 8.044309 TCTTCTCCCATTTAACGAACATCATTA 58.956 33.333 0.00 0.00 0.00 1.90
183 191 6.884295 TCTTCTCCCATTTAACGAACATCATT 59.116 34.615 0.00 0.00 0.00 2.57
198 206 3.708631 AGTCGACATGAATCTTCTCCCAT 59.291 43.478 19.50 0.00 0.00 4.00
219 229 3.966154 AGTCAACACAAGTGTCTCGTAG 58.034 45.455 6.28 0.00 44.13 3.51
251 265 4.595986 AGTTACCGAGCCCACATAAAATT 58.404 39.130 0.00 0.00 0.00 1.82
254 268 2.568062 TGAGTTACCGAGCCCACATAAA 59.432 45.455 0.00 0.00 0.00 1.40
257 271 0.981183 TTGAGTTACCGAGCCCACAT 59.019 50.000 0.00 0.00 0.00 3.21
260 274 1.626321 TCATTTGAGTTACCGAGCCCA 59.374 47.619 0.00 0.00 0.00 5.36
261 275 2.280628 CTCATTTGAGTTACCGAGCCC 58.719 52.381 0.00 0.00 37.40 5.19
267 281 5.767816 ACAAACACCTCATTTGAGTTACC 57.232 39.130 6.81 0.00 39.01 2.85
275 289 6.831868 ACACTACCTTTACAAACACCTCATTT 59.168 34.615 0.00 0.00 0.00 2.32
277 291 5.763204 CACACTACCTTTACAAACACCTCAT 59.237 40.000 0.00 0.00 0.00 2.90
278 292 5.120399 CACACTACCTTTACAAACACCTCA 58.880 41.667 0.00 0.00 0.00 3.86
279 293 5.007332 CACACACTACCTTTACAAACACCTC 59.993 44.000 0.00 0.00 0.00 3.85
287 301 7.350744 TCTAAGAACACACACTACCTTTACA 57.649 36.000 0.00 0.00 0.00 2.41
294 308 4.557205 CCACCTCTAAGAACACACACTAC 58.443 47.826 0.00 0.00 0.00 2.73
298 312 1.697432 CCCCACCTCTAAGAACACACA 59.303 52.381 0.00 0.00 0.00 3.72
304 318 2.715763 ACACTCCCCACCTCTAAGAA 57.284 50.000 0.00 0.00 0.00 2.52
305 319 3.012502 ACATACACTCCCCACCTCTAAGA 59.987 47.826 0.00 0.00 0.00 2.10
306 320 3.133003 CACATACACTCCCCACCTCTAAG 59.867 52.174 0.00 0.00 0.00 2.18
307 321 3.104512 CACATACACTCCCCACCTCTAA 58.895 50.000 0.00 0.00 0.00 2.10
310 324 0.107654 GCACATACACTCCCCACCTC 60.108 60.000 0.00 0.00 0.00 3.85
311 325 1.562672 GGCACATACACTCCCCACCT 61.563 60.000 0.00 0.00 0.00 4.00
312 326 1.077716 GGCACATACACTCCCCACC 60.078 63.158 0.00 0.00 0.00 4.61
317 338 2.309528 TCAATCGGCACATACACTCC 57.690 50.000 0.00 0.00 0.00 3.85
541 568 2.039624 GGAGACTGCTGGGGAGGA 59.960 66.667 0.00 0.00 0.00 3.71
543 570 3.086600 GGGGAGACTGCTGGGGAG 61.087 72.222 0.00 0.00 0.00 4.30
544 571 3.931631 CTGGGGAGACTGCTGGGGA 62.932 68.421 0.00 0.00 0.00 4.81
545 572 3.406200 CTGGGGAGACTGCTGGGG 61.406 72.222 0.00 0.00 0.00 4.96
546 573 2.608988 ACTGGGGAGACTGCTGGG 60.609 66.667 0.00 0.00 0.00 4.45
547 574 1.611851 AGACTGGGGAGACTGCTGG 60.612 63.158 0.00 0.00 0.00 4.85
548 575 1.612395 GGAGACTGGGGAGACTGCTG 61.612 65.000 0.00 0.00 0.00 4.41
549 576 1.305718 GGAGACTGGGGAGACTGCT 60.306 63.158 0.00 0.00 0.00 4.24
550 577 2.363172 GGGAGACTGGGGAGACTGC 61.363 68.421 0.00 0.00 0.00 4.40
551 578 1.687493 GGGGAGACTGGGGAGACTG 60.687 68.421 0.00 0.00 0.00 3.51
552 579 1.864559 AGGGGAGACTGGGGAGACT 60.865 63.158 0.00 0.00 0.00 3.24
553 580 1.382009 GAGGGGAGACTGGGGAGAC 60.382 68.421 0.00 0.00 0.00 3.36
554 581 2.997584 CGAGGGGAGACTGGGGAGA 61.998 68.421 0.00 0.00 0.00 3.71
715 771 1.083401 GAACAGCAGTCAACGCGTG 60.083 57.895 14.98 7.52 0.00 5.34
718 774 0.663153 AAAGGAACAGCAGTCAACGC 59.337 50.000 0.00 0.00 0.00 4.84
726 782 0.538057 CAGGAGGCAAAGGAACAGCA 60.538 55.000 0.00 0.00 0.00 4.41
739 795 0.041833 TCTGGGGAGAAGACAGGAGG 59.958 60.000 0.00 0.00 33.19 4.30
744 800 3.251484 ACAAAGATCTGGGGAGAAGACA 58.749 45.455 0.00 0.00 0.00 3.41
783 839 0.112412 AAACGGGATTGGGTTCAGCT 59.888 50.000 0.00 0.00 0.00 4.24
893 949 3.320541 ACCTTCTTAGCTCATCATCCTCG 59.679 47.826 0.00 0.00 0.00 4.63
960 1016 0.897863 AAGACTCTCGCCTGCTCAGT 60.898 55.000 0.00 0.00 0.00 3.41
1052 1108 1.250840 AAATTTCTGGCTCGCCCCAC 61.251 55.000 5.33 0.00 34.56 4.61
1083 1139 2.201921 ACTCTTCGCTGTCTGGACTA 57.798 50.000 2.38 0.00 0.00 2.59
1258 1314 6.407187 CCATCTATATGAGATCTCAGCAAGGG 60.407 46.154 28.26 18.87 43.52 3.95
1448 1504 6.438741 TCAACTAAATCTGGATCAGACACTCT 59.561 38.462 0.00 0.00 43.63 3.24
1514 1570 5.163652 GGGGAATGGAACTAAGAAATGAACG 60.164 44.000 0.00 0.00 0.00 3.95
1523 1579 6.998673 CCAAGTAATAGGGGAATGGAACTAAG 59.001 42.308 0.00 0.00 0.00 2.18
1577 1636 4.141846 TGGGCAACAAAGAGTTTTGCATTA 60.142 37.500 7.74 0.00 46.12 1.90
1597 1656 1.881973 CCGTTGCATCCTCATATTGGG 59.118 52.381 0.00 0.00 0.00 4.12
1679 1738 3.409026 ACTGGTCGAGAATTGCTCTTT 57.591 42.857 0.00 0.00 41.66 2.52
1715 1774 2.833631 ACTTTGAATCCTCGAACGGT 57.166 45.000 0.00 0.00 0.00 4.83
1716 1775 4.181578 ACATACTTTGAATCCTCGAACGG 58.818 43.478 0.00 0.00 0.00 4.44
1719 1778 5.245531 AGCAACATACTTTGAATCCTCGAA 58.754 37.500 0.00 0.00 0.00 3.71
1741 1800 5.890334 ACCATACACACAAGAACAAACAAG 58.110 37.500 0.00 0.00 0.00 3.16
1872 1936 3.270877 CTGTCCCAGCTGTACCATAAAC 58.729 50.000 13.81 0.00 0.00 2.01
1903 1967 6.944290 TCCTTACTAACTCACTTGTGCTACTA 59.056 38.462 0.00 0.00 0.00 1.82
1914 1978 9.459640 GAAAAACCATTTTCCTTACTAACTCAC 57.540 33.333 3.27 0.00 45.65 3.51
1974 2039 2.164219 TGAATGCAATCCTTTTCGGCTC 59.836 45.455 0.00 0.00 0.00 4.70
2021 2087 3.801594 CACGGCAGCAAACAAAAAGTAAT 59.198 39.130 0.00 0.00 0.00 1.89
2084 2150 5.565259 GCAAAATGTATTGAGACGACACTTG 59.435 40.000 0.00 0.00 31.84 3.16
2130 2196 6.418101 ACAGTATCCAATTGAGTATGCAGTT 58.582 36.000 7.12 0.00 0.00 3.16
2172 2238 8.038944 AGGAGAGAAAGTATATAGCTAGACTCG 58.961 40.741 0.00 0.00 28.11 4.18
2208 2274 6.763715 TGCATTTAGAGGGTGGTTATATCT 57.236 37.500 0.00 0.00 0.00 1.98
2333 2413 9.040939 GTAAGTAGTACAAGGGTTTACGAAAAA 57.959 33.333 2.52 0.00 32.45 1.94
2337 2417 6.010219 AGGTAAGTAGTACAAGGGTTTACGA 58.990 40.000 2.52 0.00 34.01 3.43
2433 2513 4.213270 CACGTTGGTTAGATGCTTTCTGAA 59.787 41.667 0.00 0.00 35.79 3.02
2778 2858 5.357257 AGCTAACACTATTACAATGGACCG 58.643 41.667 0.00 0.00 0.00 4.79
2902 2983 1.303643 GGGAGCTGGTGGTTCCTTG 60.304 63.158 0.00 0.00 43.65 3.61
2979 3061 6.091305 CAGTTCTTGATTCGCTTGACAGAATA 59.909 38.462 0.00 0.00 37.23 1.75
2996 3078 1.428448 TGCGACCGATTCAGTTCTTG 58.572 50.000 0.00 0.00 0.00 3.02
3064 3146 1.129998 CATTCAGGAGTTCGCTGCTTG 59.870 52.381 0.00 0.00 43.70 4.01
3071 3153 3.904136 AAGTTTGCATTCAGGAGTTCG 57.096 42.857 0.00 0.00 0.00 3.95
3200 3285 4.569943 AGGTGTAGTAAGTGCAGTCAATG 58.430 43.478 0.00 0.00 0.00 2.82
3201 3286 4.891992 AGGTGTAGTAAGTGCAGTCAAT 57.108 40.909 0.00 0.00 0.00 2.57
3202 3287 5.794726 TTAGGTGTAGTAAGTGCAGTCAA 57.205 39.130 0.00 0.00 0.00 3.18
3203 3288 5.794726 TTTAGGTGTAGTAAGTGCAGTCA 57.205 39.130 0.00 0.00 0.00 3.41
3204 3289 6.649557 ACAATTTAGGTGTAGTAAGTGCAGTC 59.350 38.462 0.00 0.00 0.00 3.51
3205 3290 6.426937 CACAATTTAGGTGTAGTAAGTGCAGT 59.573 38.462 0.00 0.00 0.00 4.40
3208 3293 7.611213 ATCACAATTTAGGTGTAGTAAGTGC 57.389 36.000 0.00 0.00 37.52 4.40
3269 3373 9.460019 TCTTTTGTGATTTACCATCATGACATA 57.540 29.630 0.00 0.00 0.00 2.29
3286 3390 0.250295 CTCCCGGCTGTCTTTTGTGA 60.250 55.000 0.00 0.00 0.00 3.58
3345 3450 3.006859 CAGTGTATGTCCTGTCCACTTCA 59.993 47.826 0.00 0.00 34.31 3.02
3359 3464 9.570488 GTTAAGTAGGAAGAACTACAGTGTATG 57.430 37.037 2.82 1.13 44.49 2.39
3363 3468 6.906659 TCGTTAAGTAGGAAGAACTACAGTG 58.093 40.000 6.20 0.00 44.49 3.66
3371 3484 9.095065 GCATCTATTTTCGTTAAGTAGGAAGAA 57.905 33.333 0.00 0.00 32.67 2.52
3372 3485 8.255206 TGCATCTATTTTCGTTAAGTAGGAAGA 58.745 33.333 0.00 0.00 32.67 2.87
3373 3486 8.328864 GTGCATCTATTTTCGTTAAGTAGGAAG 58.671 37.037 0.00 0.00 32.67 3.46
3374 3487 7.279313 GGTGCATCTATTTTCGTTAAGTAGGAA 59.721 37.037 0.00 0.00 29.57 3.36
3379 3492 6.128007 CCTTGGTGCATCTATTTTCGTTAAGT 60.128 38.462 0.00 0.00 0.00 2.24
3385 3498 4.019919 CACCTTGGTGCATCTATTTTCG 57.980 45.455 6.88 0.00 0.00 3.46
3536 3649 5.233988 GTCACCCATGTGCTAGAGATAATC 58.766 45.833 0.00 0.00 42.46 1.75
3543 3656 1.003118 GTTGGTCACCCATGTGCTAGA 59.997 52.381 0.00 0.00 41.49 2.43
3573 3686 3.063997 GCATAACCATGTGACAGCTGTAC 59.936 47.826 21.73 17.71 34.40 2.90
3652 3765 5.579511 GCTACAGAAAATAGTACTTTCGGCA 59.420 40.000 0.00 0.00 37.76 5.69
3711 3824 2.991250 TGGAATCTCCTAAACAGCTGC 58.009 47.619 15.27 0.00 37.46 5.25
3822 3937 6.967199 CAACTGAGTTTCAGGTTTACTCAAAC 59.033 38.462 10.53 0.00 42.87 2.93
3924 4041 6.735678 AAACAACTGGTCCATTTTTCAAAC 57.264 33.333 0.00 0.00 0.00 2.93
3928 4045 5.523552 CAGGAAAACAACTGGTCCATTTTTC 59.476 40.000 14.25 14.25 33.92 2.29
3956 4073 4.036380 GGTAGAAAACTTGAACCACCTGTG 59.964 45.833 0.00 0.00 0.00 3.66
3996 4113 4.314740 TTGACATGTTGCCAGGTAAAAC 57.685 40.909 0.00 0.00 35.36 2.43
4002 4119 6.201425 GCATTAATATTTGACATGTTGCCAGG 59.799 38.462 0.00 0.00 0.00 4.45
4005 4122 7.775397 AAGCATTAATATTTGACATGTTGCC 57.225 32.000 0.00 0.00 0.00 4.52
4015 4132 9.248291 GGACACACCAATAAGCATTAATATTTG 57.752 33.333 0.00 0.00 38.79 2.32
4016 4133 9.200817 AGGACACACCAATAAGCATTAATATTT 57.799 29.630 0.00 0.00 42.04 1.40
4017 4134 8.766994 AGGACACACCAATAAGCATTAATATT 57.233 30.769 0.00 0.00 42.04 1.28
4018 4135 9.507329 CTAGGACACACCAATAAGCATTAATAT 57.493 33.333 0.00 0.00 42.04 1.28
4019 4136 7.444183 GCTAGGACACACCAATAAGCATTAATA 59.556 37.037 0.00 0.00 42.04 0.98
4020 4137 6.263168 GCTAGGACACACCAATAAGCATTAAT 59.737 38.462 0.00 0.00 42.04 1.40
4021 4138 5.588648 GCTAGGACACACCAATAAGCATTAA 59.411 40.000 0.00 0.00 42.04 1.40
4022 4139 5.104527 AGCTAGGACACACCAATAAGCATTA 60.105 40.000 0.00 0.00 42.04 1.90
4212 4330 2.180131 CTGCTGTCTTGGCGCTGTTC 62.180 60.000 7.64 0.00 0.00 3.18
4219 4337 2.282040 AGGTGCTGCTGTCTTGGC 60.282 61.111 0.00 0.00 0.00 4.52
4380 4504 1.199327 TCGTCTGGAGTAACTTGAGCG 59.801 52.381 0.00 0.00 0.00 5.03
4411 4535 2.092211 GGTCGACTGTTTTCTATGCGTG 59.908 50.000 16.46 0.00 0.00 5.34
4431 4557 1.219393 GCTTTCCGAGAGACTGGGG 59.781 63.158 0.00 0.00 30.11 4.96
4432 4558 0.108424 CAGCTTTCCGAGAGACTGGG 60.108 60.000 0.00 0.00 0.00 4.45
4440 4566 2.538437 CATGACTCTCAGCTTTCCGAG 58.462 52.381 0.00 0.00 0.00 4.63
4475 4601 7.818930 CACTACCCAAATAACAAAAATGCAGAT 59.181 33.333 0.00 0.00 0.00 2.90
4501 4627 3.624861 CACATGATACCAGCCAGAAGTTC 59.375 47.826 0.00 0.00 0.00 3.01
4507 4633 1.674441 CAAGCACATGATACCAGCCAG 59.326 52.381 0.00 0.00 0.00 4.85
4539 4665 1.542915 CATGCTTCAAACTCCAGGTGG 59.457 52.381 0.00 0.00 0.00 4.61
4650 4776 6.936900 CCTGGAAATACAAGGTAGTCATATGG 59.063 42.308 2.13 0.00 0.00 2.74
4679 4805 0.762418 TGCGGGGAAAAGAAGTCTCA 59.238 50.000 0.00 0.00 0.00 3.27
4703 4829 3.251571 CGGTAAAGAAGACGAGGGAAAG 58.748 50.000 0.00 0.00 0.00 2.62
4711 4837 5.480281 CAAATTTTGCGGTAAAGAAGACG 57.520 39.130 0.00 0.00 0.00 4.18
4789 4916 4.462133 CAGAAGCAGATCCATCTTCCATT 58.538 43.478 12.73 0.00 37.51 3.16
4825 4952 4.038642 ACAGTAATTGCCAAAACCGATTGT 59.961 37.500 0.00 0.00 0.00 2.71
4835 4962 7.144661 CACTTGTGAATTACAGTAATTGCCAA 58.855 34.615 21.11 19.11 41.10 4.52
4884 5011 9.254133 CTTGTACATGTAGAATGTTCCTGATAG 57.746 37.037 15.13 0.00 33.76 2.08
4932 5430 5.104562 CAGCACTGCAGGATAAATATGTG 57.895 43.478 19.93 4.82 0.00 3.21
4979 5482 5.640189 AAATGAATCTGGAAAGAGCAGTG 57.360 39.130 0.00 0.00 0.00 3.66
4987 5508 5.534207 AGTGTGCAAAATGAATCTGGAAA 57.466 34.783 0.00 0.00 0.00 3.13
4988 5509 5.534278 TGTAGTGTGCAAAATGAATCTGGAA 59.466 36.000 0.00 0.00 0.00 3.53
4989 5510 5.069318 TGTAGTGTGCAAAATGAATCTGGA 58.931 37.500 0.00 0.00 0.00 3.86
4991 5512 9.577110 AAATATGTAGTGTGCAAAATGAATCTG 57.423 29.630 0.00 0.00 0.00 2.90
4994 5515 9.520204 GCTAAATATGTAGTGTGCAAAATGAAT 57.480 29.630 1.84 0.00 0.00 2.57
4995 5516 7.973388 GGCTAAATATGTAGTGTGCAAAATGAA 59.027 33.333 1.84 0.00 0.00 2.57
4996 5517 7.479980 GGCTAAATATGTAGTGTGCAAAATGA 58.520 34.615 1.84 0.00 0.00 2.57
4997 5518 6.414694 CGGCTAAATATGTAGTGTGCAAAATG 59.585 38.462 1.84 0.00 0.00 2.32
4998 5519 6.459573 CCGGCTAAATATGTAGTGTGCAAAAT 60.460 38.462 1.84 0.00 0.00 1.82
4999 5520 5.163703 CCGGCTAAATATGTAGTGTGCAAAA 60.164 40.000 1.84 0.00 0.00 2.44
5000 5521 4.334203 CCGGCTAAATATGTAGTGTGCAAA 59.666 41.667 1.84 0.00 0.00 3.68
5001 5522 3.874543 CCGGCTAAATATGTAGTGTGCAA 59.125 43.478 1.84 0.00 0.00 4.08
5002 5523 3.133183 TCCGGCTAAATATGTAGTGTGCA 59.867 43.478 0.00 0.00 0.00 4.57
5003 5524 3.493503 GTCCGGCTAAATATGTAGTGTGC 59.506 47.826 0.00 0.00 0.00 4.57
5004 5525 4.945246 AGTCCGGCTAAATATGTAGTGTG 58.055 43.478 0.00 0.00 0.00 3.82
5005 5526 5.357257 CAAGTCCGGCTAAATATGTAGTGT 58.643 41.667 0.00 0.00 0.00 3.55
5006 5527 4.750098 CCAAGTCCGGCTAAATATGTAGTG 59.250 45.833 0.00 0.00 0.00 2.74
5007 5528 4.407945 ACCAAGTCCGGCTAAATATGTAGT 59.592 41.667 0.00 0.00 0.00 2.73
5008 5529 4.957296 ACCAAGTCCGGCTAAATATGTAG 58.043 43.478 0.00 0.00 0.00 2.74
5009 5530 5.362105 AACCAAGTCCGGCTAAATATGTA 57.638 39.130 0.00 0.00 0.00 2.29
5010 5531 3.926058 ACCAAGTCCGGCTAAATATGT 57.074 42.857 0.00 0.00 0.00 2.29
5011 5532 6.877611 ATAAACCAAGTCCGGCTAAATATG 57.122 37.500 0.00 0.00 0.00 1.78
5012 5533 7.891498 AAATAAACCAAGTCCGGCTAAATAT 57.109 32.000 0.00 0.00 0.00 1.28
5013 5534 8.048514 ACTAAATAAACCAAGTCCGGCTAAATA 58.951 33.333 0.00 0.00 0.00 1.40
5014 5535 6.888088 ACTAAATAAACCAAGTCCGGCTAAAT 59.112 34.615 0.00 0.00 0.00 1.40
5015 5536 6.240145 ACTAAATAAACCAAGTCCGGCTAAA 58.760 36.000 0.00 0.00 0.00 1.85
5016 5537 5.807909 ACTAAATAAACCAAGTCCGGCTAA 58.192 37.500 0.00 0.00 0.00 3.09
5036 5557 0.606096 TCGCAGCAGCTGGTAAACTA 59.394 50.000 24.13 0.45 39.10 2.24
5093 5617 2.509336 CACGATCACGGTGGCCTC 60.509 66.667 8.50 0.00 44.46 4.70
5094 5618 4.082523 CCACGATCACGGTGGCCT 62.083 66.667 8.50 0.00 44.46 5.19
5097 5621 2.125147 ATGCCACGATCACGGTGG 60.125 61.111 12.50 12.50 44.46 4.61
5098 5622 1.695893 GACATGCCACGATCACGGTG 61.696 60.000 0.56 0.56 44.46 4.94
5099 5623 1.447838 GACATGCCACGATCACGGT 60.448 57.895 0.00 0.00 44.46 4.83
5100 5624 2.516589 CGACATGCCACGATCACGG 61.517 63.158 0.00 0.00 44.46 4.94
5101 5625 2.997869 CGACATGCCACGATCACG 59.002 61.111 0.00 0.00 45.75 4.35
5158 5682 3.919216 AGACGAAGAACCAATCTCACTG 58.081 45.455 0.00 0.00 37.42 3.66
5383 5908 2.166829 ACTGGTCAGTCAGTCAGCTAG 58.833 52.381 0.00 0.00 43.82 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.