Multiple sequence alignment - TraesCS7B01G279400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G279400 chr7B 100.000 3434 0 0 1 3434 512351815 512355248 0.000000e+00 6342.0
1 TraesCS7B01G279400 chr7B 94.479 326 17 1 1 325 640720682 640720357 5.120000e-138 501.0
2 TraesCS7B01G279400 chr7A 90.366 2844 137 56 636 3434 553228299 553231050 0.000000e+00 3607.0
3 TraesCS7B01G279400 chr7D 87.001 1854 110 68 636 2454 484922598 484924355 0.000000e+00 1967.0
4 TraesCS7B01G279400 chr7D 92.339 992 53 12 2446 3434 484924718 484925689 0.000000e+00 1389.0
5 TraesCS7B01G279400 chr7D 92.285 337 23 2 1 334 101410880 101411216 3.100000e-130 475.0
6 TraesCS7B01G279400 chr7D 85.496 131 10 4 373 494 484922465 484922595 1.000000e-25 128.0
7 TraesCS7B01G279400 chr3D 95.385 325 14 1 1 324 380180221 380179897 1.830000e-142 516.0
8 TraesCS7B01G279400 chr3D 93.578 327 19 2 1 325 31420384 31420058 1.430000e-133 486.0
9 TraesCS7B01G279400 chr5B 94.225 329 17 2 1 328 356369510 356369183 5.120000e-138 501.0
10 TraesCS7B01G279400 chr4B 93.884 327 17 3 1 325 504044555 504044880 1.110000e-134 490.0
11 TraesCS7B01G279400 chr1B 93.827 324 19 1 3 325 437539639 437539316 1.430000e-133 486.0
12 TraesCS7B01G279400 chr6B 93.293 328 20 2 1 327 636575545 636575219 1.850000e-132 483.0
13 TraesCS7B01G279400 chrUn 93.252 326 21 1 1 325 331003660 331003985 2.400000e-131 479.0
14 TraesCS7B01G279400 chr5A 91.525 118 10 0 518 635 548682163 548682280 2.740000e-36 163.0
15 TraesCS7B01G279400 chr3A 90.435 115 11 0 518 632 424055646 424055532 5.940000e-33 152.0
16 TraesCS7B01G279400 chr1D 75.330 227 48 6 1722 1944 279234756 279234534 6.060000e-18 102.0
17 TraesCS7B01G279400 chr1A 72.149 377 81 21 1722 2082 351475681 351475313 3.650000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G279400 chr7B 512351815 512355248 3433 False 6342.000000 6342 100.000000 1 3434 1 chr7B.!!$F1 3433
1 TraesCS7B01G279400 chr7A 553228299 553231050 2751 False 3607.000000 3607 90.366000 636 3434 1 chr7A.!!$F1 2798
2 TraesCS7B01G279400 chr7D 484922465 484925689 3224 False 1161.333333 1967 88.278667 373 3434 3 chr7D.!!$F2 3061

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 575 0.031585 TCGCAGCAAGTAGTTGACGT 59.968 50.0 14.64 0.0 35.46 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 2972 0.035881 CTTCTGCTGAACTGCTGGGA 59.964 55.0 1.33 2.36 33.58 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.978373 GACATCGTAGTCGTGCGG 58.022 61.111 0.00 0.00 38.33 5.69
21 22 1.585521 GACATCGTAGTCGTGCGGG 60.586 63.158 0.00 0.00 38.33 6.13
22 23 2.278596 CATCGTAGTCGTGCGGGG 60.279 66.667 0.00 0.00 38.33 5.73
23 24 3.524606 ATCGTAGTCGTGCGGGGG 61.525 66.667 0.00 0.00 38.33 5.40
25 26 4.789075 CGTAGTCGTGCGGGGGTG 62.789 72.222 0.00 0.00 0.00 4.61
26 27 3.688159 GTAGTCGTGCGGGGGTGT 61.688 66.667 0.00 0.00 0.00 4.16
27 28 3.376078 TAGTCGTGCGGGGGTGTC 61.376 66.667 0.00 0.00 0.00 3.67
31 32 4.619227 CGTGCGGGGGTGTCAGTT 62.619 66.667 0.00 0.00 0.00 3.16
32 33 2.668550 GTGCGGGGGTGTCAGTTC 60.669 66.667 0.00 0.00 0.00 3.01
33 34 2.847234 TGCGGGGGTGTCAGTTCT 60.847 61.111 0.00 0.00 0.00 3.01
34 35 2.358737 GCGGGGGTGTCAGTTCTG 60.359 66.667 0.00 0.00 0.00 3.02
35 36 2.347490 CGGGGGTGTCAGTTCTGG 59.653 66.667 0.00 0.00 0.00 3.86
36 37 2.214216 CGGGGGTGTCAGTTCTGGA 61.214 63.158 0.00 0.00 0.00 3.86
37 38 1.679898 GGGGGTGTCAGTTCTGGAG 59.320 63.158 0.00 0.00 0.00 3.86
38 39 1.128188 GGGGGTGTCAGTTCTGGAGT 61.128 60.000 0.00 0.00 0.00 3.85
39 40 0.765510 GGGGTGTCAGTTCTGGAGTT 59.234 55.000 0.00 0.00 0.00 3.01
40 41 1.270893 GGGGTGTCAGTTCTGGAGTTC 60.271 57.143 0.00 0.00 0.00 3.01
41 42 1.605712 GGGTGTCAGTTCTGGAGTTCG 60.606 57.143 0.00 0.00 0.00 3.95
42 43 1.340248 GGTGTCAGTTCTGGAGTTCGA 59.660 52.381 0.00 0.00 0.00 3.71
43 44 2.028930 GGTGTCAGTTCTGGAGTTCGAT 60.029 50.000 0.00 0.00 0.00 3.59
44 45 2.989840 GTGTCAGTTCTGGAGTTCGATG 59.010 50.000 0.00 0.00 0.00 3.84
45 46 2.029020 TGTCAGTTCTGGAGTTCGATGG 60.029 50.000 0.00 0.00 0.00 3.51
46 47 1.066858 TCAGTTCTGGAGTTCGATGGC 60.067 52.381 0.00 0.00 0.00 4.40
47 48 0.108615 AGTTCTGGAGTTCGATGGCG 60.109 55.000 0.00 0.00 39.35 5.69
48 49 0.389948 GTTCTGGAGTTCGATGGCGT 60.390 55.000 0.00 0.00 38.98 5.68
49 50 0.389817 TTCTGGAGTTCGATGGCGTG 60.390 55.000 0.00 0.00 38.98 5.34
50 51 1.079819 CTGGAGTTCGATGGCGTGT 60.080 57.895 0.00 0.00 38.98 4.49
51 52 1.078759 CTGGAGTTCGATGGCGTGTC 61.079 60.000 0.00 0.00 38.98 3.67
52 53 1.810030 GGAGTTCGATGGCGTGTCC 60.810 63.158 0.00 0.00 38.98 4.02
53 54 2.126071 AGTTCGATGGCGTGTCCG 60.126 61.111 0.00 0.00 38.98 4.79
54 55 3.186047 GTTCGATGGCGTGTCCGG 61.186 66.667 0.00 0.00 38.98 5.14
55 56 4.444838 TTCGATGGCGTGTCCGGG 62.445 66.667 0.00 0.00 38.98 5.73
58 59 4.832608 GATGGCGTGTCCGGGGAC 62.833 72.222 10.95 10.95 44.77 4.46
71 72 4.265056 GGGACACGTTGCCCTGGT 62.265 66.667 13.95 0.00 41.31 4.00
72 73 2.668550 GGACACGTTGCCCTGGTC 60.669 66.667 0.00 0.00 0.00 4.02
73 74 2.426023 GACACGTTGCCCTGGTCT 59.574 61.111 0.00 0.00 0.00 3.85
74 75 1.961277 GACACGTTGCCCTGGTCTG 60.961 63.158 0.00 0.00 0.00 3.51
75 76 2.377628 GACACGTTGCCCTGGTCTGA 62.378 60.000 0.00 0.00 0.00 3.27
76 77 1.003355 CACGTTGCCCTGGTCTGAT 60.003 57.895 0.00 0.00 0.00 2.90
77 78 0.606401 CACGTTGCCCTGGTCTGATT 60.606 55.000 0.00 0.00 0.00 2.57
78 79 0.321653 ACGTTGCCCTGGTCTGATTC 60.322 55.000 0.00 0.00 0.00 2.52
79 80 0.036010 CGTTGCCCTGGTCTGATTCT 60.036 55.000 0.00 0.00 0.00 2.40
80 81 1.611673 CGTTGCCCTGGTCTGATTCTT 60.612 52.381 0.00 0.00 0.00 2.52
81 82 2.519013 GTTGCCCTGGTCTGATTCTTT 58.481 47.619 0.00 0.00 0.00 2.52
82 83 2.489722 GTTGCCCTGGTCTGATTCTTTC 59.510 50.000 0.00 0.00 0.00 2.62
83 84 1.704628 TGCCCTGGTCTGATTCTTTCA 59.295 47.619 0.00 0.00 0.00 2.69
84 85 2.108075 TGCCCTGGTCTGATTCTTTCAA 59.892 45.455 0.00 0.00 32.78 2.69
85 86 2.489722 GCCCTGGTCTGATTCTTTCAAC 59.510 50.000 0.00 0.00 32.78 3.18
86 87 2.744202 CCCTGGTCTGATTCTTTCAACG 59.256 50.000 0.00 0.00 32.78 4.10
87 88 2.744202 CCTGGTCTGATTCTTTCAACGG 59.256 50.000 0.00 0.00 32.78 4.44
88 89 2.151202 TGGTCTGATTCTTTCAACGGC 58.849 47.619 0.00 0.00 32.78 5.68
89 90 2.151202 GGTCTGATTCTTTCAACGGCA 58.849 47.619 0.00 0.00 32.78 5.69
90 91 2.552315 GGTCTGATTCTTTCAACGGCAA 59.448 45.455 0.00 0.00 32.78 4.52
91 92 3.191371 GGTCTGATTCTTTCAACGGCAAT 59.809 43.478 0.00 0.00 32.78 3.56
92 93 4.161333 GTCTGATTCTTTCAACGGCAATG 58.839 43.478 0.00 0.00 32.78 2.82
93 94 3.191162 TCTGATTCTTTCAACGGCAATGG 59.809 43.478 0.00 0.00 32.78 3.16
94 95 2.890311 TGATTCTTTCAACGGCAATGGT 59.110 40.909 0.00 0.00 0.00 3.55
95 96 3.320541 TGATTCTTTCAACGGCAATGGTT 59.679 39.130 0.00 0.00 0.00 3.67
96 97 3.810310 TTCTTTCAACGGCAATGGTTT 57.190 38.095 0.00 0.00 0.00 3.27
97 98 3.810310 TCTTTCAACGGCAATGGTTTT 57.190 38.095 0.00 0.00 0.00 2.43
98 99 3.452474 TCTTTCAACGGCAATGGTTTTG 58.548 40.909 0.00 0.00 0.00 2.44
99 100 1.576356 TTCAACGGCAATGGTTTTGC 58.424 45.000 1.76 1.76 44.22 3.68
100 101 0.749649 TCAACGGCAATGGTTTTGCT 59.250 45.000 9.86 0.00 44.36 3.91
101 102 1.137872 TCAACGGCAATGGTTTTGCTT 59.862 42.857 9.86 0.00 44.36 3.91
102 103 1.526464 CAACGGCAATGGTTTTGCTTC 59.474 47.619 9.86 0.00 44.36 3.86
103 104 0.749649 ACGGCAATGGTTTTGCTTCA 59.250 45.000 9.86 0.00 44.36 3.02
104 105 1.269726 ACGGCAATGGTTTTGCTTCAG 60.270 47.619 9.86 3.21 44.36 3.02
105 106 1.799544 GGCAATGGTTTTGCTTCAGG 58.200 50.000 9.86 0.00 44.36 3.86
106 107 1.150827 GCAATGGTTTTGCTTCAGGC 58.849 50.000 3.18 0.00 41.87 4.85
118 119 3.288809 GCTTCAGGCAAACTACTTTGG 57.711 47.619 0.00 0.00 37.78 3.28
119 120 2.884639 GCTTCAGGCAAACTACTTTGGA 59.115 45.455 0.00 0.00 37.78 3.53
120 121 3.057946 GCTTCAGGCAAACTACTTTGGAG 60.058 47.826 0.00 0.00 37.78 3.86
121 122 3.140325 TCAGGCAAACTACTTTGGAGG 57.860 47.619 0.00 0.00 37.78 4.30
122 123 2.441750 TCAGGCAAACTACTTTGGAGGT 59.558 45.455 0.00 0.00 37.78 3.85
123 124 2.814336 CAGGCAAACTACTTTGGAGGTC 59.186 50.000 0.00 0.00 37.78 3.85
124 125 2.160205 GGCAAACTACTTTGGAGGTCC 58.840 52.381 0.00 0.00 37.78 4.46
125 126 1.804748 GCAAACTACTTTGGAGGTCCG 59.195 52.381 0.00 0.00 37.78 4.79
126 127 2.809299 GCAAACTACTTTGGAGGTCCGT 60.809 50.000 0.00 0.00 37.78 4.69
127 128 3.555586 GCAAACTACTTTGGAGGTCCGTA 60.556 47.826 0.00 0.00 37.78 4.02
128 129 4.634199 CAAACTACTTTGGAGGTCCGTAA 58.366 43.478 0.00 0.00 39.43 3.18
129 130 4.961438 AACTACTTTGGAGGTCCGTAAA 57.039 40.909 0.00 0.00 39.43 2.01
130 131 4.532314 ACTACTTTGGAGGTCCGTAAAG 57.468 45.455 11.59 11.59 39.43 1.85
131 132 2.180432 ACTTTGGAGGTCCGTAAAGC 57.820 50.000 12.57 0.00 39.43 3.51
132 133 1.697982 ACTTTGGAGGTCCGTAAAGCT 59.302 47.619 12.57 0.00 39.43 3.74
133 134 2.076863 CTTTGGAGGTCCGTAAAGCTG 58.923 52.381 0.00 0.00 39.43 4.24
134 135 0.321298 TTGGAGGTCCGTAAAGCTGC 60.321 55.000 0.00 0.00 39.43 5.25
135 136 1.192146 TGGAGGTCCGTAAAGCTGCT 61.192 55.000 0.00 0.00 39.43 4.24
136 137 0.741221 GGAGGTCCGTAAAGCTGCTG 60.741 60.000 1.35 0.00 32.97 4.41
137 138 0.246635 GAGGTCCGTAAAGCTGCTGA 59.753 55.000 1.35 0.00 0.00 4.26
138 139 0.905357 AGGTCCGTAAAGCTGCTGAT 59.095 50.000 1.35 0.00 0.00 2.90
139 140 1.134670 AGGTCCGTAAAGCTGCTGATC 60.135 52.381 1.35 0.00 0.00 2.92
140 141 1.405526 GGTCCGTAAAGCTGCTGATCA 60.406 52.381 1.35 0.00 0.00 2.92
141 142 1.929836 GTCCGTAAAGCTGCTGATCAG 59.070 52.381 18.84 18.84 45.62 2.90
150 151 3.640231 GCTGATCAGCGATGGAGC 58.360 61.111 30.64 7.76 45.29 4.70
151 152 1.960250 GCTGATCAGCGATGGAGCC 60.960 63.158 30.64 3.71 45.29 4.70
152 153 1.664017 CTGATCAGCGATGGAGCCG 60.664 63.158 10.38 0.00 38.01 5.52
159 160 3.257561 CGATGGAGCCGCGTCAAG 61.258 66.667 4.92 0.00 0.00 3.02
160 161 3.567797 GATGGAGCCGCGTCAAGC 61.568 66.667 4.92 0.00 43.95 4.01
161 162 4.087892 ATGGAGCCGCGTCAAGCT 62.088 61.111 7.32 7.32 45.59 3.74
168 169 4.717629 CGCGTCAAGCTCGGGTGA 62.718 66.667 0.00 0.00 45.59 4.02
169 170 2.357034 GCGTCAAGCTCGGGTGAA 60.357 61.111 0.00 0.00 44.04 3.18
170 171 2.383527 GCGTCAAGCTCGGGTGAAG 61.384 63.158 0.00 0.00 44.04 3.02
171 172 1.289066 CGTCAAGCTCGGGTGAAGA 59.711 57.895 0.00 0.00 0.00 2.87
172 173 0.734253 CGTCAAGCTCGGGTGAAGAG 60.734 60.000 0.00 0.00 38.68 2.85
173 174 0.390472 GTCAAGCTCGGGTGAAGAGG 60.390 60.000 0.00 0.00 36.31 3.69
174 175 0.832135 TCAAGCTCGGGTGAAGAGGT 60.832 55.000 0.00 0.00 46.91 3.85
175 176 0.671781 CAAGCTCGGGTGAAGAGGTG 60.672 60.000 0.00 0.00 44.55 4.00
176 177 0.832135 AAGCTCGGGTGAAGAGGTGA 60.832 55.000 0.00 0.00 44.55 4.02
177 178 0.616111 AGCTCGGGTGAAGAGGTGAT 60.616 55.000 0.00 0.00 43.78 3.06
178 179 0.179097 GCTCGGGTGAAGAGGTGATC 60.179 60.000 0.00 0.00 36.31 2.92
179 180 1.479709 CTCGGGTGAAGAGGTGATCT 58.520 55.000 0.00 0.00 41.27 2.75
180 181 1.135915 CTCGGGTGAAGAGGTGATCTG 59.864 57.143 0.00 0.00 38.67 2.90
181 182 0.898320 CGGGTGAAGAGGTGATCTGT 59.102 55.000 0.00 0.00 38.67 3.41
182 183 1.134965 CGGGTGAAGAGGTGATCTGTC 60.135 57.143 0.00 0.00 38.67 3.51
183 184 2.183679 GGGTGAAGAGGTGATCTGTCT 58.816 52.381 0.00 0.00 38.67 3.41
184 185 2.167487 GGGTGAAGAGGTGATCTGTCTC 59.833 54.545 0.00 0.00 38.67 3.36
185 186 2.167487 GGTGAAGAGGTGATCTGTCTCC 59.833 54.545 0.00 0.00 38.67 3.71
187 188 3.513515 GTGAAGAGGTGATCTGTCTCCTT 59.486 47.826 0.00 0.00 45.81 3.36
188 189 4.020662 GTGAAGAGGTGATCTGTCTCCTTT 60.021 45.833 0.00 0.00 45.81 3.11
189 190 4.221703 TGAAGAGGTGATCTGTCTCCTTTC 59.778 45.833 0.00 7.20 45.81 2.62
190 191 3.784178 AGAGGTGATCTGTCTCCTTTCA 58.216 45.455 0.00 0.00 45.81 2.69
191 192 3.513515 AGAGGTGATCTGTCTCCTTTCAC 59.486 47.826 0.00 0.00 45.81 3.18
192 193 3.513515 GAGGTGATCTGTCTCCTTTCACT 59.486 47.826 0.00 0.00 45.81 3.41
193 194 3.906846 AGGTGATCTGTCTCCTTTCACTT 59.093 43.478 0.00 0.00 43.96 3.16
194 195 5.087323 AGGTGATCTGTCTCCTTTCACTTA 58.913 41.667 0.00 0.00 43.96 2.24
195 196 5.186797 AGGTGATCTGTCTCCTTTCACTTAG 59.813 44.000 0.00 0.00 43.96 2.18
196 197 5.046950 GGTGATCTGTCTCCTTTCACTTAGT 60.047 44.000 0.00 0.00 37.45 2.24
197 198 5.866633 GTGATCTGTCTCCTTTCACTTAGTG 59.133 44.000 5.94 5.94 35.09 2.74
198 199 4.873746 TCTGTCTCCTTTCACTTAGTGG 57.126 45.455 12.79 0.00 33.87 4.00
199 200 4.480115 TCTGTCTCCTTTCACTTAGTGGA 58.520 43.478 12.79 0.00 33.87 4.02
200 201 4.524714 TCTGTCTCCTTTCACTTAGTGGAG 59.475 45.833 12.79 10.89 44.00 3.86
203 204 4.090090 TCTCCTTTCACTTAGTGGAGAGG 58.910 47.826 12.79 15.57 45.61 3.69
204 205 3.173965 TCCTTTCACTTAGTGGAGAGGG 58.826 50.000 20.58 13.93 33.87 4.30
205 206 2.355209 CCTTTCACTTAGTGGAGAGGGC 60.355 54.545 12.79 0.00 33.87 5.19
206 207 1.276622 TTCACTTAGTGGAGAGGGCC 58.723 55.000 12.79 0.00 33.87 5.80
207 208 0.116342 TCACTTAGTGGAGAGGGCCA 59.884 55.000 12.79 0.00 33.87 5.36
208 209 0.984230 CACTTAGTGGAGAGGGCCAA 59.016 55.000 6.18 0.00 40.20 4.52
209 210 1.065854 CACTTAGTGGAGAGGGCCAAG 60.066 57.143 6.18 0.00 40.20 3.61
210 211 0.107459 CTTAGTGGAGAGGGCCAAGC 60.107 60.000 6.18 0.00 40.20 4.01
211 212 1.899437 TTAGTGGAGAGGGCCAAGCG 61.899 60.000 6.18 0.00 40.20 4.68
250 251 7.644986 GGATTATCCTATCTTTTCAGTCACG 57.355 40.000 3.59 0.00 32.53 4.35
251 252 7.210873 GGATTATCCTATCTTTTCAGTCACGT 58.789 38.462 3.59 0.00 32.53 4.49
252 253 8.358148 GGATTATCCTATCTTTTCAGTCACGTA 58.642 37.037 3.59 0.00 32.53 3.57
253 254 9.745880 GATTATCCTATCTTTTCAGTCACGTAA 57.254 33.333 0.00 0.00 0.00 3.18
257 258 9.915629 ATCCTATCTTTTCAGTCACGTAATATC 57.084 33.333 0.00 0.00 0.00 1.63
258 259 8.074370 TCCTATCTTTTCAGTCACGTAATATCG 58.926 37.037 0.00 0.00 0.00 2.92
259 260 8.074370 CCTATCTTTTCAGTCACGTAATATCGA 58.926 37.037 0.00 0.00 34.70 3.59
260 261 9.613957 CTATCTTTTCAGTCACGTAATATCGAT 57.386 33.333 2.16 2.16 34.70 3.59
261 262 7.679659 TCTTTTCAGTCACGTAATATCGATG 57.320 36.000 8.54 0.00 34.70 3.84
262 263 7.255569 TCTTTTCAGTCACGTAATATCGATGT 58.744 34.615 8.54 0.00 34.70 3.06
263 264 7.758076 TCTTTTCAGTCACGTAATATCGATGTT 59.242 33.333 12.28 12.28 34.70 2.71
264 265 7.821595 TTTCAGTCACGTAATATCGATGTTT 57.178 32.000 12.87 6.68 34.70 2.83
265 266 8.914328 TTTCAGTCACGTAATATCGATGTTTA 57.086 30.769 12.87 5.72 34.70 2.01
266 267 8.914328 TTCAGTCACGTAATATCGATGTTTAA 57.086 30.769 12.87 0.00 34.70 1.52
267 268 8.914328 TCAGTCACGTAATATCGATGTTTAAA 57.086 30.769 12.87 0.00 34.70 1.52
268 269 9.524106 TCAGTCACGTAATATCGATGTTTAAAT 57.476 29.630 12.87 0.00 34.70 1.40
269 270 9.567917 CAGTCACGTAATATCGATGTTTAAATG 57.432 33.333 12.87 9.48 34.70 2.32
270 271 8.761497 AGTCACGTAATATCGATGTTTAAATGG 58.239 33.333 12.87 0.00 34.70 3.16
271 272 7.529519 GTCACGTAATATCGATGTTTAAATGGC 59.470 37.037 12.87 7.75 34.70 4.40
272 273 7.439955 TCACGTAATATCGATGTTTAAATGGCT 59.560 33.333 12.87 0.00 34.70 4.75
273 274 8.067784 CACGTAATATCGATGTTTAAATGGCTT 58.932 33.333 12.87 0.00 34.70 4.35
274 275 8.067784 ACGTAATATCGATGTTTAAATGGCTTG 58.932 33.333 12.87 0.00 34.70 4.01
275 276 8.067784 CGTAATATCGATGTTTAAATGGCTTGT 58.932 33.333 12.87 0.00 0.00 3.16
278 279 9.730420 AATATCGATGTTTAAATGGCTTGTAAC 57.270 29.630 8.54 0.00 0.00 2.50
279 280 6.811253 TCGATGTTTAAATGGCTTGTAACT 57.189 33.333 0.00 0.00 0.00 2.24
280 281 6.607689 TCGATGTTTAAATGGCTTGTAACTG 58.392 36.000 0.00 0.00 0.00 3.16
281 282 6.428465 TCGATGTTTAAATGGCTTGTAACTGA 59.572 34.615 0.00 0.00 0.00 3.41
282 283 7.041030 TCGATGTTTAAATGGCTTGTAACTGAA 60.041 33.333 0.00 0.00 0.00 3.02
283 284 7.754924 CGATGTTTAAATGGCTTGTAACTGAAT 59.245 33.333 0.00 0.00 0.00 2.57
284 285 8.986477 ATGTTTAAATGGCTTGTAACTGAATC 57.014 30.769 0.00 0.00 0.00 2.52
285 286 8.177119 TGTTTAAATGGCTTGTAACTGAATCT 57.823 30.769 0.00 0.00 0.00 2.40
286 287 8.637986 TGTTTAAATGGCTTGTAACTGAATCTT 58.362 29.630 0.00 0.00 0.00 2.40
287 288 9.476202 GTTTAAATGGCTTGTAACTGAATCTTT 57.524 29.630 0.00 0.00 0.00 2.52
291 292 7.944729 ATGGCTTGTAACTGAATCTTTATGT 57.055 32.000 0.00 0.00 0.00 2.29
292 293 7.759489 TGGCTTGTAACTGAATCTTTATGTT 57.241 32.000 0.00 0.00 0.00 2.71
293 294 8.856153 TGGCTTGTAACTGAATCTTTATGTTA 57.144 30.769 0.00 0.00 0.00 2.41
294 295 9.461312 TGGCTTGTAACTGAATCTTTATGTTAT 57.539 29.630 0.00 0.00 0.00 1.89
362 363 5.668558 GGACAATTCCATACAACGGTATC 57.331 43.478 0.00 0.00 42.30 2.24
363 364 5.365619 GGACAATTCCATACAACGGTATCT 58.634 41.667 0.00 0.00 42.30 1.98
364 365 5.236478 GGACAATTCCATACAACGGTATCTG 59.764 44.000 0.00 0.00 42.30 2.90
365 366 5.123227 ACAATTCCATACAACGGTATCTGG 58.877 41.667 0.00 0.00 38.14 3.86
366 367 2.902705 TCCATACAACGGTATCTGGC 57.097 50.000 0.00 0.00 38.14 4.85
367 368 2.394632 TCCATACAACGGTATCTGGCT 58.605 47.619 0.00 0.00 38.14 4.75
368 369 2.102420 TCCATACAACGGTATCTGGCTG 59.898 50.000 0.00 0.00 38.14 4.85
369 370 2.483876 CATACAACGGTATCTGGCTGG 58.516 52.381 0.00 0.00 38.14 4.85
370 371 0.177141 TACAACGGTATCTGGCTGGC 59.823 55.000 0.00 0.00 0.00 4.85
371 372 2.173669 CAACGGTATCTGGCTGGCG 61.174 63.158 0.00 0.00 0.00 5.69
414 415 4.429212 CGGCACCATCGTCCGTCA 62.429 66.667 0.00 0.00 38.47 4.35
425 435 4.050934 TCCGTCACTCGCACGCAT 62.051 61.111 0.00 0.00 35.87 4.73
428 438 3.490759 GTCACTCGCACGCATGGG 61.491 66.667 8.44 8.44 40.10 4.00
442 452 2.032634 ATGGGTACGCAACTGCACG 61.033 57.895 17.26 0.00 42.21 5.34
470 480 3.009115 GGCTGCCCCTACACTCCA 61.009 66.667 7.66 0.00 0.00 3.86
482 492 4.518249 CCTACACTCCAAGGGAAGATTTC 58.482 47.826 0.00 0.00 0.00 2.17
494 504 1.305930 AAGATTTCGCGCCCCAGAAC 61.306 55.000 0.00 0.00 0.00 3.01
495 505 2.750237 ATTTCGCGCCCCAGAACC 60.750 61.111 0.00 0.00 0.00 3.62
496 506 3.268103 ATTTCGCGCCCCAGAACCT 62.268 57.895 0.00 0.00 0.00 3.50
497 507 2.764637 ATTTCGCGCCCCAGAACCTT 62.765 55.000 0.00 0.00 0.00 3.50
498 508 2.969300 TTTCGCGCCCCAGAACCTTT 62.969 55.000 0.00 0.00 0.00 3.11
499 509 3.737172 CGCGCCCCAGAACCTTTG 61.737 66.667 0.00 0.00 0.00 2.77
500 510 3.373565 GCGCCCCAGAACCTTTGG 61.374 66.667 0.00 0.00 35.41 3.28
501 511 2.434331 CGCCCCAGAACCTTTGGA 59.566 61.111 0.00 0.00 37.96 3.53
502 512 1.000896 CGCCCCAGAACCTTTGGAT 60.001 57.895 0.00 0.00 37.96 3.41
503 513 0.611896 CGCCCCAGAACCTTTGGATT 60.612 55.000 0.00 0.00 37.96 3.01
504 514 0.897621 GCCCCAGAACCTTTGGATTG 59.102 55.000 0.00 0.00 37.96 2.67
505 515 1.560505 CCCCAGAACCTTTGGATTGG 58.439 55.000 0.00 0.00 37.96 3.16
506 516 1.077005 CCCCAGAACCTTTGGATTGGA 59.923 52.381 0.00 0.00 37.96 3.53
507 517 2.292455 CCCCAGAACCTTTGGATTGGAT 60.292 50.000 0.00 0.00 37.96 3.41
508 518 3.026694 CCCAGAACCTTTGGATTGGATC 58.973 50.000 0.00 0.00 37.96 3.36
509 519 3.309410 CCCAGAACCTTTGGATTGGATCT 60.309 47.826 0.00 0.00 37.96 2.75
510 520 4.347607 CCAGAACCTTTGGATTGGATCTT 58.652 43.478 0.00 0.00 37.96 2.40
511 521 4.400567 CCAGAACCTTTGGATTGGATCTTC 59.599 45.833 0.00 0.00 37.96 2.87
512 522 4.400567 CAGAACCTTTGGATTGGATCTTCC 59.599 45.833 0.00 0.00 33.98 3.46
513 523 3.388552 ACCTTTGGATTGGATCTTCCC 57.611 47.619 0.00 0.00 35.03 3.97
514 524 2.929043 ACCTTTGGATTGGATCTTCCCT 59.071 45.455 0.00 0.00 35.03 4.20
515 525 3.337909 ACCTTTGGATTGGATCTTCCCTT 59.662 43.478 0.00 0.00 35.03 3.95
516 526 3.703052 CCTTTGGATTGGATCTTCCCTTG 59.297 47.826 0.00 0.00 35.03 3.61
517 527 2.442236 TGGATTGGATCTTCCCTTGC 57.558 50.000 0.00 0.00 35.03 4.01
518 528 1.063717 TGGATTGGATCTTCCCTTGCC 60.064 52.381 0.00 0.00 35.03 4.52
519 529 1.312815 GATTGGATCTTCCCTTGCCG 58.687 55.000 0.00 0.00 35.03 5.69
520 530 0.106519 ATTGGATCTTCCCTTGCCGG 60.107 55.000 0.00 0.00 35.03 6.13
530 540 3.726517 CTTGCCGGGTGCGAAGTG 61.727 66.667 2.18 0.00 45.60 3.16
542 552 2.342648 GAAGTGGGTCGCCTTCGT 59.657 61.111 3.53 0.00 36.96 3.85
543 553 1.301479 GAAGTGGGTCGCCTTCGTT 60.301 57.895 3.53 0.00 36.96 3.85
544 554 1.566018 GAAGTGGGTCGCCTTCGTTG 61.566 60.000 3.53 0.00 36.96 4.10
545 555 2.280592 GTGGGTCGCCTTCGTTGT 60.281 61.111 0.00 0.00 36.96 3.32
546 556 1.890510 GTGGGTCGCCTTCGTTGTT 60.891 57.895 0.00 0.00 36.96 2.83
547 557 1.595929 TGGGTCGCCTTCGTTGTTC 60.596 57.895 0.00 0.00 36.96 3.18
548 558 2.664436 GGGTCGCCTTCGTTGTTCG 61.664 63.158 0.00 0.00 41.41 3.95
549 559 2.170273 GTCGCCTTCGTTGTTCGC 59.830 61.111 0.00 0.00 39.67 4.70
550 560 2.279584 TCGCCTTCGTTGTTCGCA 60.280 55.556 0.00 0.00 39.67 5.10
551 561 2.170985 CGCCTTCGTTGTTCGCAG 59.829 61.111 0.00 0.00 39.67 5.18
552 562 2.127232 GCCTTCGTTGTTCGCAGC 60.127 61.111 0.00 0.00 39.67 5.25
553 563 2.892334 GCCTTCGTTGTTCGCAGCA 61.892 57.895 0.00 0.00 39.67 4.41
554 564 1.646540 CCTTCGTTGTTCGCAGCAA 59.353 52.632 0.00 0.00 39.67 3.91
555 565 0.384725 CCTTCGTTGTTCGCAGCAAG 60.385 55.000 0.00 0.00 39.67 4.01
556 566 0.304705 CTTCGTTGTTCGCAGCAAGT 59.695 50.000 0.00 0.00 39.67 3.16
557 567 1.525197 CTTCGTTGTTCGCAGCAAGTA 59.475 47.619 0.00 0.00 39.67 2.24
558 568 1.136690 TCGTTGTTCGCAGCAAGTAG 58.863 50.000 0.00 0.00 39.67 2.57
559 569 0.859232 CGTTGTTCGCAGCAAGTAGT 59.141 50.000 0.00 0.00 0.00 2.73
560 570 1.260561 CGTTGTTCGCAGCAAGTAGTT 59.739 47.619 0.00 0.00 0.00 2.24
561 571 2.639751 GTTGTTCGCAGCAAGTAGTTG 58.360 47.619 5.89 5.89 36.67 3.16
562 572 2.232756 TGTTCGCAGCAAGTAGTTGA 57.767 45.000 14.64 0.00 35.46 3.18
563 573 1.864711 TGTTCGCAGCAAGTAGTTGAC 59.135 47.619 14.64 5.65 35.46 3.18
564 574 1.136611 GTTCGCAGCAAGTAGTTGACG 60.137 52.381 14.64 13.13 35.46 4.35
565 575 0.031585 TCGCAGCAAGTAGTTGACGT 59.968 50.000 14.64 0.00 35.46 4.34
566 576 0.859232 CGCAGCAAGTAGTTGACGTT 59.141 50.000 14.64 0.00 35.46 3.99
567 577 1.397190 CGCAGCAAGTAGTTGACGTTG 60.397 52.381 14.64 7.20 35.46 4.10
568 578 1.597663 GCAGCAAGTAGTTGACGTTGT 59.402 47.619 14.64 0.00 35.46 3.32
569 579 2.031683 GCAGCAAGTAGTTGACGTTGTT 59.968 45.455 14.64 0.00 35.46 2.83
570 580 3.246699 GCAGCAAGTAGTTGACGTTGTTA 59.753 43.478 14.64 0.00 35.46 2.41
571 581 4.084013 GCAGCAAGTAGTTGACGTTGTTAT 60.084 41.667 14.64 0.00 35.46 1.89
572 582 5.119588 GCAGCAAGTAGTTGACGTTGTTATA 59.880 40.000 14.64 0.00 35.46 0.98
573 583 6.183360 GCAGCAAGTAGTTGACGTTGTTATAT 60.183 38.462 14.64 0.00 35.46 0.86
574 584 7.173419 CAGCAAGTAGTTGACGTTGTTATATG 58.827 38.462 14.64 0.00 35.46 1.78
575 585 6.872020 AGCAAGTAGTTGACGTTGTTATATGT 59.128 34.615 14.64 0.00 35.46 2.29
576 586 7.063074 AGCAAGTAGTTGACGTTGTTATATGTC 59.937 37.037 14.64 0.00 35.46 3.06
577 587 7.063074 GCAAGTAGTTGACGTTGTTATATGTCT 59.937 37.037 14.64 0.00 35.46 3.41
578 588 8.922676 CAAGTAGTTGACGTTGTTATATGTCTT 58.077 33.333 4.11 0.00 35.46 3.01
625 635 1.632422 ACGTAATTTGCGTACCCTCG 58.368 50.000 10.88 0.00 41.06 4.63
626 636 1.202114 ACGTAATTTGCGTACCCTCGA 59.798 47.619 10.88 0.00 41.06 4.04
627 637 2.261345 CGTAATTTGCGTACCCTCGAA 58.739 47.619 0.00 0.00 0.00 3.71
628 638 2.667481 CGTAATTTGCGTACCCTCGAAA 59.333 45.455 0.00 0.00 0.00 3.46
629 639 3.123284 CGTAATTTGCGTACCCTCGAAAA 59.877 43.478 0.00 0.00 41.60 2.29
630 640 4.377226 CGTAATTTGCGTACCCTCGAAAAA 60.377 41.667 0.00 0.00 40.89 1.94
749 759 3.752339 CCCCGCAAAGCCAAGCTC 61.752 66.667 0.00 0.00 38.25 4.09
750 760 2.985282 CCCGCAAAGCCAAGCTCA 60.985 61.111 0.00 0.00 38.25 4.26
753 763 1.731969 CGCAAAGCCAAGCTCAAGC 60.732 57.895 0.00 0.00 38.25 4.01
764 774 4.379243 CTCAAGCTGGCCGGACGT 62.379 66.667 18.31 1.73 0.00 4.34
918 935 1.969200 GACCCTTCCTTCCTACCCGC 61.969 65.000 0.00 0.00 0.00 6.13
919 936 2.743179 CCCTTCCTTCCTACCCGCC 61.743 68.421 0.00 0.00 0.00 6.13
1026 1044 4.578913 CGTTCATCACGTGCCTCT 57.421 55.556 11.67 0.00 44.49 3.69
1084 1102 4.662961 TGCCCGCAGTGTCAGTCG 62.663 66.667 0.00 0.00 0.00 4.18
1104 1130 3.166630 GAGTGACGCGACGCACTC 61.167 66.667 29.71 29.71 45.25 3.51
1148 1196 6.223120 GCCTGAGATATTTTTCTCTCTCTCC 58.777 44.000 3.41 0.00 42.22 3.71
1426 1480 1.374252 GTCCGCTTTGCTCGAGGAA 60.374 57.895 16.06 16.06 32.09 3.36
1553 1610 3.706373 GGGACGAGGAGGCTGCAA 61.706 66.667 9.23 0.00 0.00 4.08
1554 1611 2.435059 GGACGAGGAGGCTGCAAC 60.435 66.667 9.23 0.74 0.00 4.17
1555 1612 2.435059 GACGAGGAGGCTGCAACC 60.435 66.667 9.23 0.00 0.00 3.77
1556 1613 4.379243 ACGAGGAGGCTGCAACCG 62.379 66.667 9.23 11.03 33.69 4.44
1558 1615 4.021925 GAGGAGGCTGCAACCGGT 62.022 66.667 9.23 0.00 33.69 5.28
1733 1790 4.636435 CCAACCCGGGCAACTCGT 62.636 66.667 24.08 0.00 0.00 4.18
1803 1860 1.822613 CGAGGGCGCAGGAGTACTA 60.823 63.158 10.83 0.00 0.00 1.82
1911 1968 4.463597 CGCCGACGCTTACTACAA 57.536 55.556 0.00 0.00 0.00 2.41
1958 2015 2.166829 ACTGGTCAGTCAGTCAGCTAG 58.833 52.381 0.00 0.00 43.82 3.42
2003 2060 1.525718 TTGCTTGGCATGCGTGACAT 61.526 50.000 16.96 0.00 44.52 3.06
2009 2066 1.612950 TGGCATGCGTGACATTTTCTT 59.387 42.857 11.40 0.00 38.84 2.52
2183 2241 3.919216 AGACGAAGAACCAATCTCACTG 58.081 45.455 0.00 0.00 37.42 3.66
2240 2299 2.997869 CGACATGCCACGATCACG 59.002 61.111 0.00 0.00 45.75 4.35
2242 2301 1.447838 GACATGCCACGATCACGGT 60.448 57.895 0.00 0.00 44.46 4.83
2248 2307 2.509336 CACGATCACGGTGGCCTC 60.509 66.667 8.50 0.00 44.46 4.70
2305 2367 0.606096 TCGCAGCAGCTGGTAAACTA 59.394 50.000 24.13 0.45 39.10 2.24
2325 2387 5.807909 ACTAAATAAACCAAGTCCGGCTAA 58.192 37.500 0.00 0.00 0.00 3.09
2326 2388 6.240145 ACTAAATAAACCAAGTCCGGCTAAA 58.760 36.000 0.00 0.00 0.00 1.85
2328 2390 8.048514 ACTAAATAAACCAAGTCCGGCTAAATA 58.951 33.333 0.00 0.00 0.00 1.40
2332 2394 5.362105 AACCAAGTCCGGCTAAATATGTA 57.638 39.130 0.00 0.00 0.00 2.29
2333 2395 4.957296 ACCAAGTCCGGCTAAATATGTAG 58.043 43.478 0.00 0.00 0.00 2.74
2334 2396 4.407945 ACCAAGTCCGGCTAAATATGTAGT 59.592 41.667 0.00 0.00 0.00 2.73
2335 2397 4.750098 CCAAGTCCGGCTAAATATGTAGTG 59.250 45.833 0.00 0.00 0.00 2.74
2336 2398 5.357257 CAAGTCCGGCTAAATATGTAGTGT 58.643 41.667 0.00 0.00 0.00 3.55
2337 2399 4.945246 AGTCCGGCTAAATATGTAGTGTG 58.055 43.478 0.00 0.00 0.00 3.82
2338 2400 3.493503 GTCCGGCTAAATATGTAGTGTGC 59.506 47.826 0.00 0.00 0.00 4.57
2339 2401 3.133183 TCCGGCTAAATATGTAGTGTGCA 59.867 43.478 0.00 0.00 0.00 4.57
2340 2402 3.874543 CCGGCTAAATATGTAGTGTGCAA 59.125 43.478 1.84 0.00 0.00 4.08
2341 2403 4.334203 CCGGCTAAATATGTAGTGTGCAAA 59.666 41.667 1.84 0.00 0.00 3.68
2342 2404 5.163703 CCGGCTAAATATGTAGTGTGCAAAA 60.164 40.000 1.84 0.00 0.00 2.44
2343 2405 6.459573 CCGGCTAAATATGTAGTGTGCAAAAT 60.460 38.462 1.84 0.00 0.00 1.82
2344 2406 6.414694 CGGCTAAATATGTAGTGTGCAAAATG 59.585 38.462 1.84 0.00 0.00 2.32
2345 2407 7.479980 GGCTAAATATGTAGTGTGCAAAATGA 58.520 34.615 1.84 0.00 0.00 2.57
2346 2408 7.973388 GGCTAAATATGTAGTGTGCAAAATGAA 59.027 33.333 1.84 0.00 0.00 2.57
2347 2409 9.520204 GCTAAATATGTAGTGTGCAAAATGAAT 57.480 29.630 1.84 0.00 0.00 2.57
2350 2412 9.577110 AAATATGTAGTGTGCAAAATGAATCTG 57.423 29.630 0.00 0.00 0.00 2.90
2351 2413 5.375417 TGTAGTGTGCAAAATGAATCTGG 57.625 39.130 0.00 0.00 0.00 3.86
2352 2414 5.069318 TGTAGTGTGCAAAATGAATCTGGA 58.931 37.500 0.00 0.00 0.00 3.86
2353 2415 5.534278 TGTAGTGTGCAAAATGAATCTGGAA 59.466 36.000 0.00 0.00 0.00 3.53
2354 2416 5.534207 AGTGTGCAAAATGAATCTGGAAA 57.466 34.783 0.00 0.00 0.00 3.13
2409 2494 5.104562 CAGCACTGCAGGATAAATATGTG 57.895 43.478 19.93 4.82 0.00 3.21
2457 2913 9.254133 CTTGTACATGTAGAATGTTCCTGATAG 57.746 37.037 15.13 0.00 33.76 2.08
2506 2962 7.144661 CACTTGTGAATTACAGTAATTGCCAA 58.855 34.615 21.11 19.11 41.10 4.52
2516 2972 4.038642 ACAGTAATTGCCAAAACCGATTGT 59.961 37.500 0.00 0.00 0.00 2.71
2552 3008 4.462133 CAGAAGCAGATCCATCTTCCATT 58.538 43.478 12.73 0.00 37.51 3.16
2630 3087 5.480281 CAAATTTTGCGGTAAAGAAGACG 57.520 39.130 0.00 0.00 0.00 4.18
2638 3095 3.251571 CGGTAAAGAAGACGAGGGAAAG 58.748 50.000 0.00 0.00 0.00 2.62
2662 3119 0.762418 TGCGGGGAAAAGAAGTCTCA 59.238 50.000 0.00 0.00 0.00 3.27
2691 3148 6.936900 CCTGGAAATACAAGGTAGTCATATGG 59.063 42.308 2.13 0.00 0.00 2.74
2802 3259 1.542915 CATGCTTCAAACTCCAGGTGG 59.457 52.381 0.00 0.00 0.00 4.61
2834 3291 1.674441 CAAGCACATGATACCAGCCAG 59.326 52.381 0.00 0.00 0.00 4.85
2840 3297 3.624861 CACATGATACCAGCCAGAAGTTC 59.375 47.826 0.00 0.00 0.00 3.01
2866 3323 7.818930 CACTACCCAAATAACAAAAATGCAGAT 59.181 33.333 0.00 0.00 0.00 2.90
2901 3358 2.538437 CATGACTCTCAGCTTTCCGAG 58.462 52.381 0.00 0.00 0.00 4.63
2909 3366 0.108424 CAGCTTTCCGAGAGACTGGG 60.108 60.000 0.00 0.00 0.00 4.45
2910 3367 1.219393 GCTTTCCGAGAGACTGGGG 59.781 63.158 0.00 0.00 30.11 4.96
2930 3389 2.092211 GGTCGACTGTTTTCTATGCGTG 59.908 50.000 16.46 0.00 0.00 5.34
2961 3420 1.199327 TCGTCTGGAGTAACTTGAGCG 59.801 52.381 0.00 0.00 0.00 5.03
3122 3587 2.282040 AGGTGCTGCTGTCTTGGC 60.282 61.111 0.00 0.00 0.00 4.52
3129 3594 2.180131 CTGCTGTCTTGGCGCTGTTC 62.180 60.000 7.64 0.00 0.00 3.18
3320 3786 5.588648 GCTAGGACACACCAATAAGCATTAA 59.411 40.000 0.00 0.00 42.04 1.40
3321 3787 6.263168 GCTAGGACACACCAATAAGCATTAAT 59.737 38.462 0.00 0.00 42.04 1.40
3322 3788 7.444183 GCTAGGACACACCAATAAGCATTAATA 59.556 37.037 0.00 0.00 42.04 0.98
3323 3789 9.507329 CTAGGACACACCAATAAGCATTAATAT 57.493 33.333 0.00 0.00 42.04 1.28
3324 3790 8.766994 AGGACACACCAATAAGCATTAATATT 57.233 30.769 0.00 0.00 42.04 1.28
3325 3791 9.200817 AGGACACACCAATAAGCATTAATATTT 57.799 29.630 0.00 0.00 42.04 1.40
3326 3792 9.248291 GGACACACCAATAAGCATTAATATTTG 57.752 33.333 0.00 0.00 38.79 2.32
3336 3802 7.775397 AAGCATTAATATTTGACATGTTGCC 57.225 32.000 0.00 0.00 0.00 4.52
3339 3805 6.201425 GCATTAATATTTGACATGTTGCCAGG 59.799 38.462 0.00 0.00 0.00 4.45
3345 3811 4.314740 TTGACATGTTGCCAGGTAAAAC 57.685 40.909 0.00 0.00 35.36 2.43
3385 3851 4.036380 GGTAGAAAACTTGAACCACCTGTG 59.964 45.833 0.00 0.00 0.00 3.66
3413 3879 5.523552 CAGGAAAACAACTGGTCCATTTTTC 59.476 40.000 14.25 14.25 33.92 2.29
3417 3883 6.735678 AAACAACTGGTCCATTTTTCAAAC 57.264 33.333 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.585521 CCCGCACGACTACGATGTC 60.586 63.158 0.00 0.00 42.66 3.06
4 5 2.488355 CCCGCACGACTACGATGT 59.512 61.111 0.00 0.00 42.66 3.06
5 6 2.278596 CCCCGCACGACTACGATG 60.279 66.667 0.00 0.00 42.66 3.84
6 7 3.524606 CCCCCGCACGACTACGAT 61.525 66.667 0.00 0.00 42.66 3.73
8 9 4.789075 CACCCCCGCACGACTACG 62.789 72.222 0.00 0.00 45.75 3.51
9 10 3.637926 GACACCCCCGCACGACTAC 62.638 68.421 0.00 0.00 0.00 2.73
10 11 3.376078 GACACCCCCGCACGACTA 61.376 66.667 0.00 0.00 0.00 2.59
14 15 4.619227 AACTGACACCCCCGCACG 62.619 66.667 0.00 0.00 0.00 5.34
15 16 2.668550 GAACTGACACCCCCGCAC 60.669 66.667 0.00 0.00 0.00 5.34
16 17 2.847234 AGAACTGACACCCCCGCA 60.847 61.111 0.00 0.00 0.00 5.69
17 18 2.358737 CAGAACTGACACCCCCGC 60.359 66.667 0.00 0.00 0.00 6.13
18 19 2.172483 CTCCAGAACTGACACCCCCG 62.172 65.000 3.19 0.00 0.00 5.73
19 20 1.128188 ACTCCAGAACTGACACCCCC 61.128 60.000 3.19 0.00 0.00 5.40
20 21 0.765510 AACTCCAGAACTGACACCCC 59.234 55.000 3.19 0.00 0.00 4.95
21 22 1.605712 CGAACTCCAGAACTGACACCC 60.606 57.143 3.19 0.00 0.00 4.61
22 23 1.340248 TCGAACTCCAGAACTGACACC 59.660 52.381 3.19 0.00 0.00 4.16
23 24 2.795175 TCGAACTCCAGAACTGACAC 57.205 50.000 3.19 0.00 0.00 3.67
24 25 2.029020 CCATCGAACTCCAGAACTGACA 60.029 50.000 3.19 0.00 0.00 3.58
25 26 2.611518 CCATCGAACTCCAGAACTGAC 58.388 52.381 3.19 0.00 0.00 3.51
26 27 1.066858 GCCATCGAACTCCAGAACTGA 60.067 52.381 3.19 0.00 0.00 3.41
27 28 1.363744 GCCATCGAACTCCAGAACTG 58.636 55.000 0.00 0.00 0.00 3.16
28 29 0.108615 CGCCATCGAACTCCAGAACT 60.109 55.000 0.00 0.00 38.10 3.01
29 30 0.389948 ACGCCATCGAACTCCAGAAC 60.390 55.000 0.00 0.00 39.41 3.01
30 31 0.389817 CACGCCATCGAACTCCAGAA 60.390 55.000 0.00 0.00 39.41 3.02
31 32 1.215382 CACGCCATCGAACTCCAGA 59.785 57.895 0.00 0.00 39.41 3.86
32 33 1.078759 GACACGCCATCGAACTCCAG 61.079 60.000 0.00 0.00 39.41 3.86
33 34 1.080093 GACACGCCATCGAACTCCA 60.080 57.895 0.00 0.00 39.41 3.86
34 35 1.810030 GGACACGCCATCGAACTCC 60.810 63.158 0.00 0.00 39.41 3.85
35 36 2.158959 CGGACACGCCATCGAACTC 61.159 63.158 0.00 0.00 39.41 3.01
36 37 2.126071 CGGACACGCCATCGAACT 60.126 61.111 0.00 0.00 39.41 3.01
37 38 3.186047 CCGGACACGCCATCGAAC 61.186 66.667 0.00 0.00 39.22 3.95
38 39 4.444838 CCCGGACACGCCATCGAA 62.445 66.667 0.73 0.00 39.22 3.71
41 42 4.832608 GTCCCCGGACACGCCATC 62.833 72.222 0.73 0.00 44.02 3.51
54 55 4.265056 ACCAGGGCAACGTGTCCC 62.265 66.667 15.56 15.56 45.08 4.46
59 60 0.321653 GAATCAGACCAGGGCAACGT 60.322 55.000 0.00 0.00 37.60 3.99
60 61 0.036010 AGAATCAGACCAGGGCAACG 60.036 55.000 0.00 0.00 37.60 4.10
61 62 2.206576 AAGAATCAGACCAGGGCAAC 57.793 50.000 0.00 0.00 0.00 4.17
62 63 2.108075 TGAAAGAATCAGACCAGGGCAA 59.892 45.455 0.00 0.00 33.04 4.52
63 64 1.704628 TGAAAGAATCAGACCAGGGCA 59.295 47.619 0.00 0.00 33.04 5.36
64 65 2.489722 GTTGAAAGAATCAGACCAGGGC 59.510 50.000 0.00 0.00 39.77 5.19
65 66 2.744202 CGTTGAAAGAATCAGACCAGGG 59.256 50.000 0.00 0.00 39.77 4.45
66 67 2.744202 CCGTTGAAAGAATCAGACCAGG 59.256 50.000 0.00 0.00 39.77 4.45
67 68 2.160417 GCCGTTGAAAGAATCAGACCAG 59.840 50.000 0.00 0.00 39.77 4.00
68 69 2.151202 GCCGTTGAAAGAATCAGACCA 58.849 47.619 0.00 0.00 39.77 4.02
69 70 2.151202 TGCCGTTGAAAGAATCAGACC 58.849 47.619 0.00 0.00 39.77 3.85
70 71 3.896648 TTGCCGTTGAAAGAATCAGAC 57.103 42.857 0.00 0.00 39.77 3.51
71 72 3.191162 CCATTGCCGTTGAAAGAATCAGA 59.809 43.478 0.00 0.00 39.77 3.27
72 73 3.057315 ACCATTGCCGTTGAAAGAATCAG 60.057 43.478 0.00 0.00 39.77 2.90
73 74 2.890311 ACCATTGCCGTTGAAAGAATCA 59.110 40.909 0.00 0.00 35.85 2.57
74 75 3.575965 ACCATTGCCGTTGAAAGAATC 57.424 42.857 0.00 0.00 0.00 2.52
75 76 4.335400 AAACCATTGCCGTTGAAAGAAT 57.665 36.364 0.00 0.00 0.00 2.40
76 77 3.810310 AAACCATTGCCGTTGAAAGAA 57.190 38.095 0.00 0.00 0.00 2.52
77 78 3.452474 CAAAACCATTGCCGTTGAAAGA 58.548 40.909 0.00 0.00 0.00 2.52
78 79 2.032979 GCAAAACCATTGCCGTTGAAAG 60.033 45.455 1.80 0.00 39.38 2.62
79 80 1.936547 GCAAAACCATTGCCGTTGAAA 59.063 42.857 1.80 0.00 39.38 2.69
80 81 1.137872 AGCAAAACCATTGCCGTTGAA 59.862 42.857 9.37 0.00 45.98 2.69
81 82 0.749649 AGCAAAACCATTGCCGTTGA 59.250 45.000 9.37 0.00 45.98 3.18
82 83 1.526464 GAAGCAAAACCATTGCCGTTG 59.474 47.619 9.37 0.00 45.98 4.10
83 84 1.137872 TGAAGCAAAACCATTGCCGTT 59.862 42.857 9.37 0.00 45.98 4.44
84 85 0.749649 TGAAGCAAAACCATTGCCGT 59.250 45.000 9.37 0.00 45.98 5.68
85 86 1.421382 CTGAAGCAAAACCATTGCCG 58.579 50.000 9.37 0.00 45.98 5.69
86 87 1.799544 CCTGAAGCAAAACCATTGCC 58.200 50.000 9.37 0.00 45.98 4.52
87 88 1.150827 GCCTGAAGCAAAACCATTGC 58.849 50.000 5.06 5.06 45.22 3.56
98 99 2.884639 TCCAAAGTAGTTTGCCTGAAGC 59.115 45.455 16.26 0.00 41.64 3.86
99 100 3.503748 CCTCCAAAGTAGTTTGCCTGAAG 59.496 47.826 16.26 8.40 41.64 3.02
100 101 3.117663 ACCTCCAAAGTAGTTTGCCTGAA 60.118 43.478 16.26 0.40 41.64 3.02
101 102 2.441750 ACCTCCAAAGTAGTTTGCCTGA 59.558 45.455 16.26 8.45 41.64 3.86
102 103 2.814336 GACCTCCAAAGTAGTTTGCCTG 59.186 50.000 16.26 9.19 41.64 4.85
103 104 2.224793 GGACCTCCAAAGTAGTTTGCCT 60.225 50.000 16.26 0.00 41.64 4.75
104 105 2.160205 GGACCTCCAAAGTAGTTTGCC 58.840 52.381 16.26 8.74 41.64 4.52
105 106 1.804748 CGGACCTCCAAAGTAGTTTGC 59.195 52.381 16.26 3.76 41.64 3.68
106 107 3.121738 ACGGACCTCCAAAGTAGTTTG 57.878 47.619 14.97 14.97 42.49 2.93
107 108 4.961438 TTACGGACCTCCAAAGTAGTTT 57.039 40.909 0.00 0.00 35.14 2.66
108 109 4.801914 GCTTTACGGACCTCCAAAGTAGTT 60.802 45.833 9.66 0.00 33.78 2.24
109 110 3.306571 GCTTTACGGACCTCCAAAGTAGT 60.307 47.826 9.66 0.00 33.78 2.73
110 111 3.056035 AGCTTTACGGACCTCCAAAGTAG 60.056 47.826 9.66 0.00 33.78 2.57
111 112 2.901839 AGCTTTACGGACCTCCAAAGTA 59.098 45.455 9.66 0.00 33.78 2.24
112 113 1.697982 AGCTTTACGGACCTCCAAAGT 59.302 47.619 9.66 0.00 33.78 2.66
113 114 2.076863 CAGCTTTACGGACCTCCAAAG 58.923 52.381 0.00 5.42 34.15 2.77
114 115 1.880646 GCAGCTTTACGGACCTCCAAA 60.881 52.381 0.00 0.00 35.14 3.28
115 116 0.321298 GCAGCTTTACGGACCTCCAA 60.321 55.000 0.00 0.00 35.14 3.53
116 117 1.192146 AGCAGCTTTACGGACCTCCA 61.192 55.000 0.00 0.00 35.14 3.86
117 118 0.741221 CAGCAGCTTTACGGACCTCC 60.741 60.000 0.00 0.00 0.00 4.30
118 119 0.246635 TCAGCAGCTTTACGGACCTC 59.753 55.000 0.00 0.00 0.00 3.85
119 120 0.905357 ATCAGCAGCTTTACGGACCT 59.095 50.000 0.00 0.00 0.00 3.85
120 121 1.291132 GATCAGCAGCTTTACGGACC 58.709 55.000 0.00 0.00 0.00 4.46
121 122 1.929836 CTGATCAGCAGCTTTACGGAC 59.070 52.381 10.38 0.00 37.90 4.79
122 123 2.299993 CTGATCAGCAGCTTTACGGA 57.700 50.000 10.38 0.00 37.90 4.69
134 135 1.664017 CGGCTCCATCGCTGATCAG 60.664 63.158 18.84 18.84 38.57 2.90
135 136 2.418777 CGGCTCCATCGCTGATCA 59.581 61.111 0.00 0.00 38.57 2.92
142 143 3.257561 CTTGACGCGGCTCCATCG 61.258 66.667 15.80 0.00 0.00 3.84
143 144 3.567797 GCTTGACGCGGCTCCATC 61.568 66.667 15.80 0.00 0.00 3.51
144 145 4.087892 AGCTTGACGCGGCTCCAT 62.088 61.111 15.80 0.00 45.59 3.41
145 146 4.742201 GAGCTTGACGCGGCTCCA 62.742 66.667 15.80 0.34 46.32 3.86
151 152 4.717629 TCACCCGAGCTTGACGCG 62.718 66.667 3.53 3.53 45.59 6.01
152 153 2.357034 TTCACCCGAGCTTGACGC 60.357 61.111 1.22 0.00 39.57 5.19
153 154 0.734253 CTCTTCACCCGAGCTTGACG 60.734 60.000 1.22 0.00 0.00 4.35
154 155 0.390472 CCTCTTCACCCGAGCTTGAC 60.390 60.000 1.22 0.00 0.00 3.18
155 156 0.832135 ACCTCTTCACCCGAGCTTGA 60.832 55.000 1.22 0.00 0.00 3.02
156 157 0.671781 CACCTCTTCACCCGAGCTTG 60.672 60.000 0.00 0.00 0.00 4.01
157 158 0.832135 TCACCTCTTCACCCGAGCTT 60.832 55.000 0.00 0.00 0.00 3.74
158 159 0.616111 ATCACCTCTTCACCCGAGCT 60.616 55.000 0.00 0.00 0.00 4.09
159 160 0.179097 GATCACCTCTTCACCCGAGC 60.179 60.000 0.00 0.00 0.00 5.03
160 161 1.135915 CAGATCACCTCTTCACCCGAG 59.864 57.143 0.00 0.00 29.16 4.63
161 162 1.186200 CAGATCACCTCTTCACCCGA 58.814 55.000 0.00 0.00 29.16 5.14
162 163 0.898320 ACAGATCACCTCTTCACCCG 59.102 55.000 0.00 0.00 29.16 5.28
163 164 2.167487 GAGACAGATCACCTCTTCACCC 59.833 54.545 0.00 0.00 29.16 4.61
164 165 2.167487 GGAGACAGATCACCTCTTCACC 59.833 54.545 0.00 0.00 33.05 4.02
165 166 3.096092 AGGAGACAGATCACCTCTTCAC 58.904 50.000 0.00 0.00 41.73 3.18
166 167 3.464720 AGGAGACAGATCACCTCTTCA 57.535 47.619 0.00 0.00 41.73 3.02
167 168 4.221703 TGAAAGGAGACAGATCACCTCTTC 59.778 45.833 0.00 0.00 44.45 2.87
168 169 4.020662 GTGAAAGGAGACAGATCACCTCTT 60.021 45.833 0.00 0.00 44.45 2.85
169 170 3.513515 GTGAAAGGAGACAGATCACCTCT 59.486 47.826 0.00 0.00 44.45 3.69
170 171 3.513515 AGTGAAAGGAGACAGATCACCTC 59.486 47.826 0.00 0.00 44.45 3.85
171 172 3.515562 AGTGAAAGGAGACAGATCACCT 58.484 45.455 0.00 0.00 46.94 4.00
172 173 3.971245 AGTGAAAGGAGACAGATCACC 57.029 47.619 0.00 0.00 39.06 4.02
173 174 5.866633 CACTAAGTGAAAGGAGACAGATCAC 59.133 44.000 0.00 0.00 38.76 3.06
174 175 5.047021 CCACTAAGTGAAAGGAGACAGATCA 60.047 44.000 0.00 0.00 35.23 2.92
175 176 5.186021 TCCACTAAGTGAAAGGAGACAGATC 59.814 44.000 0.00 0.00 35.23 2.75
176 177 5.087323 TCCACTAAGTGAAAGGAGACAGAT 58.913 41.667 0.00 0.00 35.23 2.90
177 178 4.480115 TCCACTAAGTGAAAGGAGACAGA 58.520 43.478 0.00 0.00 35.23 3.41
178 179 4.815269 CTCCACTAAGTGAAAGGAGACAG 58.185 47.826 0.00 0.00 46.89 3.51
179 180 4.873746 CTCCACTAAGTGAAAGGAGACA 57.126 45.455 0.00 0.00 46.89 3.41
182 183 3.196685 CCCTCTCCACTAAGTGAAAGGAG 59.803 52.174 0.00 0.00 45.64 3.69
183 184 3.173965 CCCTCTCCACTAAGTGAAAGGA 58.826 50.000 0.00 0.00 35.23 3.36
184 185 2.355209 GCCCTCTCCACTAAGTGAAAGG 60.355 54.545 0.00 0.00 35.23 3.11
185 186 2.355209 GGCCCTCTCCACTAAGTGAAAG 60.355 54.545 0.00 0.00 35.23 2.62
186 187 1.628846 GGCCCTCTCCACTAAGTGAAA 59.371 52.381 0.00 0.00 35.23 2.69
187 188 1.276622 GGCCCTCTCCACTAAGTGAA 58.723 55.000 0.00 0.00 35.23 3.18
188 189 0.116342 TGGCCCTCTCCACTAAGTGA 59.884 55.000 0.00 0.00 35.23 3.41
189 190 0.984230 TTGGCCCTCTCCACTAAGTG 59.016 55.000 0.00 0.00 35.50 3.16
190 191 1.280457 CTTGGCCCTCTCCACTAAGT 58.720 55.000 0.00 0.00 35.50 2.24
191 192 0.107459 GCTTGGCCCTCTCCACTAAG 60.107 60.000 0.00 0.00 35.50 2.18
192 193 1.899437 CGCTTGGCCCTCTCCACTAA 61.899 60.000 0.00 0.00 35.50 2.24
193 194 2.359169 CGCTTGGCCCTCTCCACTA 61.359 63.158 0.00 0.00 35.50 2.74
194 195 3.710722 CGCTTGGCCCTCTCCACT 61.711 66.667 0.00 0.00 35.50 4.00
226 227 7.210873 ACGTGACTGAAAAGATAGGATAATCC 58.789 38.462 0.00 0.00 36.58 3.01
227 228 9.745880 TTACGTGACTGAAAAGATAGGATAATC 57.254 33.333 0.00 0.00 0.00 1.75
231 232 9.915629 GATATTACGTGACTGAAAAGATAGGAT 57.084 33.333 0.00 0.00 0.00 3.24
232 233 8.074370 CGATATTACGTGACTGAAAAGATAGGA 58.926 37.037 0.00 0.00 0.00 2.94
233 234 8.074370 TCGATATTACGTGACTGAAAAGATAGG 58.926 37.037 0.00 0.00 34.70 2.57
234 235 9.613957 ATCGATATTACGTGACTGAAAAGATAG 57.386 33.333 0.00 0.00 34.70 2.08
235 236 9.394477 CATCGATATTACGTGACTGAAAAGATA 57.606 33.333 0.00 0.00 34.70 1.98
236 237 7.921214 ACATCGATATTACGTGACTGAAAAGAT 59.079 33.333 0.00 0.00 34.70 2.40
237 238 7.255569 ACATCGATATTACGTGACTGAAAAGA 58.744 34.615 0.00 0.00 34.70 2.52
238 239 7.451281 ACATCGATATTACGTGACTGAAAAG 57.549 36.000 0.00 0.00 34.70 2.27
239 240 7.821595 AACATCGATATTACGTGACTGAAAA 57.178 32.000 0.00 0.00 34.70 2.29
240 241 7.821595 AAACATCGATATTACGTGACTGAAA 57.178 32.000 0.00 0.00 34.70 2.69
241 242 8.914328 TTAAACATCGATATTACGTGACTGAA 57.086 30.769 0.00 0.00 34.70 3.02
242 243 8.914328 TTTAAACATCGATATTACGTGACTGA 57.086 30.769 0.00 0.00 34.70 3.41
243 244 9.567917 CATTTAAACATCGATATTACGTGACTG 57.432 33.333 0.00 0.00 34.70 3.51
244 245 8.761497 CCATTTAAACATCGATATTACGTGACT 58.239 33.333 0.00 0.00 34.70 3.41
245 246 7.529519 GCCATTTAAACATCGATATTACGTGAC 59.470 37.037 0.00 0.00 34.70 3.67
246 247 7.439955 AGCCATTTAAACATCGATATTACGTGA 59.560 33.333 0.00 0.00 34.70 4.35
247 248 7.572759 AGCCATTTAAACATCGATATTACGTG 58.427 34.615 0.00 3.04 34.70 4.49
248 249 7.724305 AGCCATTTAAACATCGATATTACGT 57.276 32.000 0.00 0.00 34.70 3.57
249 250 8.067784 ACAAGCCATTTAAACATCGATATTACG 58.932 33.333 0.00 0.00 0.00 3.18
252 253 9.730420 GTTACAAGCCATTTAAACATCGATATT 57.270 29.630 0.00 0.00 0.00 1.28
253 254 9.120538 AGTTACAAGCCATTTAAACATCGATAT 57.879 29.630 0.00 0.00 0.00 1.63
254 255 8.394877 CAGTTACAAGCCATTTAAACATCGATA 58.605 33.333 0.00 0.00 0.00 2.92
255 256 7.120579 TCAGTTACAAGCCATTTAAACATCGAT 59.879 33.333 0.00 0.00 0.00 3.59
256 257 6.428465 TCAGTTACAAGCCATTTAAACATCGA 59.572 34.615 0.00 0.00 0.00 3.59
257 258 6.607689 TCAGTTACAAGCCATTTAAACATCG 58.392 36.000 0.00 0.00 0.00 3.84
258 259 8.986477 ATTCAGTTACAAGCCATTTAAACATC 57.014 30.769 0.00 0.00 0.00 3.06
259 260 8.806146 AGATTCAGTTACAAGCCATTTAAACAT 58.194 29.630 0.00 0.00 0.00 2.71
260 261 8.177119 AGATTCAGTTACAAGCCATTTAAACA 57.823 30.769 0.00 0.00 0.00 2.83
261 262 9.476202 AAAGATTCAGTTACAAGCCATTTAAAC 57.524 29.630 0.00 0.00 0.00 2.01
265 266 8.806146 ACATAAAGATTCAGTTACAAGCCATTT 58.194 29.630 0.00 0.00 0.00 2.32
266 267 8.353423 ACATAAAGATTCAGTTACAAGCCATT 57.647 30.769 0.00 0.00 0.00 3.16
267 268 7.944729 ACATAAAGATTCAGTTACAAGCCAT 57.055 32.000 0.00 0.00 0.00 4.40
268 269 7.759489 AACATAAAGATTCAGTTACAAGCCA 57.241 32.000 0.00 0.00 0.00 4.75
340 341 5.236478 CAGATACCGTTGTATGGAATTGTCC 59.764 44.000 0.00 0.00 45.21 4.02
341 342 5.236478 CCAGATACCGTTGTATGGAATTGTC 59.764 44.000 0.00 0.00 37.80 3.18
342 343 5.123227 CCAGATACCGTTGTATGGAATTGT 58.877 41.667 0.00 0.00 37.80 2.71
343 344 4.024048 GCCAGATACCGTTGTATGGAATTG 60.024 45.833 0.00 0.00 37.80 2.32
344 345 4.134563 GCCAGATACCGTTGTATGGAATT 58.865 43.478 0.00 0.00 37.80 2.17
345 346 3.391296 AGCCAGATACCGTTGTATGGAAT 59.609 43.478 0.00 0.00 37.80 3.01
346 347 2.769663 AGCCAGATACCGTTGTATGGAA 59.230 45.455 0.00 0.00 37.80 3.53
347 348 2.102420 CAGCCAGATACCGTTGTATGGA 59.898 50.000 0.00 0.00 37.80 3.41
348 349 2.483876 CAGCCAGATACCGTTGTATGG 58.516 52.381 0.00 0.00 37.80 2.74
349 350 2.483876 CCAGCCAGATACCGTTGTATG 58.516 52.381 0.00 0.00 37.80 2.39
350 351 1.202651 GCCAGCCAGATACCGTTGTAT 60.203 52.381 0.00 0.00 40.41 2.29
351 352 0.177141 GCCAGCCAGATACCGTTGTA 59.823 55.000 0.00 0.00 0.00 2.41
352 353 1.078426 GCCAGCCAGATACCGTTGT 60.078 57.895 0.00 0.00 0.00 3.32
353 354 2.173669 CGCCAGCCAGATACCGTTG 61.174 63.158 0.00 0.00 0.00 4.10
354 355 1.324740 TACGCCAGCCAGATACCGTT 61.325 55.000 0.00 0.00 0.00 4.44
355 356 1.735376 CTACGCCAGCCAGATACCGT 61.735 60.000 0.00 0.00 0.00 4.83
356 357 1.007271 CTACGCCAGCCAGATACCG 60.007 63.158 0.00 0.00 0.00 4.02
357 358 1.000496 GTACTACGCCAGCCAGATACC 60.000 57.143 0.00 0.00 0.00 2.73
358 359 1.679680 TGTACTACGCCAGCCAGATAC 59.320 52.381 0.00 0.00 0.00 2.24
359 360 1.679680 GTGTACTACGCCAGCCAGATA 59.320 52.381 0.00 0.00 0.00 1.98
360 361 0.460311 GTGTACTACGCCAGCCAGAT 59.540 55.000 0.00 0.00 0.00 2.90
361 362 1.888018 GTGTACTACGCCAGCCAGA 59.112 57.895 0.00 0.00 0.00 3.86
362 363 1.516386 CGTGTACTACGCCAGCCAG 60.516 63.158 5.20 0.00 46.92 4.85
363 364 2.569657 CGTGTACTACGCCAGCCA 59.430 61.111 5.20 0.00 46.92 4.75
371 372 1.081892 TGCGTCTCTCCGTGTACTAC 58.918 55.000 0.00 0.00 0.00 2.73
403 404 2.178273 TGCGAGTGACGGACGATG 59.822 61.111 0.00 0.00 42.83 3.84
408 409 4.050934 ATGCGTGCGAGTGACGGA 62.051 61.111 0.00 0.00 41.57 4.69
409 410 3.842126 CATGCGTGCGAGTGACGG 61.842 66.667 0.00 0.00 42.83 4.79
411 412 2.829043 TACCCATGCGTGCGAGTGAC 62.829 60.000 0.00 0.00 0.00 3.67
412 413 2.641277 TACCCATGCGTGCGAGTGA 61.641 57.895 0.00 0.00 0.00 3.41
413 414 2.125713 TACCCATGCGTGCGAGTG 60.126 61.111 0.00 0.00 0.00 3.51
414 415 2.125673 GTACCCATGCGTGCGAGT 60.126 61.111 0.00 0.02 0.00 4.18
425 435 2.663520 CGTGCAGTTGCGTACCCA 60.664 61.111 0.00 0.00 45.83 4.51
428 438 2.664436 GGGTCGTGCAGTTGCGTAC 61.664 63.158 0.00 0.00 45.83 3.67
454 464 1.078143 CTTGGAGTGTAGGGGCAGC 60.078 63.158 0.00 0.00 0.00 5.25
456 466 1.923395 CCCTTGGAGTGTAGGGGCA 60.923 63.158 0.00 0.00 46.21 5.36
470 480 1.749258 GGGCGCGAAATCTTCCCTT 60.749 57.895 12.10 0.00 34.19 3.95
482 492 3.737172 CAAAGGTTCTGGGGCGCG 61.737 66.667 0.00 0.00 0.00 6.86
494 504 3.677156 AGGGAAGATCCAATCCAAAGG 57.323 47.619 10.86 0.00 38.64 3.11
495 505 3.131755 GCAAGGGAAGATCCAATCCAAAG 59.868 47.826 10.86 2.71 38.64 2.77
496 506 3.099141 GCAAGGGAAGATCCAATCCAAA 58.901 45.455 10.86 0.00 38.64 3.28
497 507 2.624029 GGCAAGGGAAGATCCAATCCAA 60.624 50.000 10.86 0.00 38.64 3.53
498 508 1.063717 GGCAAGGGAAGATCCAATCCA 60.064 52.381 10.86 0.00 38.64 3.41
499 509 1.697284 GGCAAGGGAAGATCCAATCC 58.303 55.000 0.00 1.98 38.64 3.01
500 510 1.312815 CGGCAAGGGAAGATCCAATC 58.687 55.000 0.00 0.00 38.64 2.67
501 511 0.106519 CCGGCAAGGGAAGATCCAAT 60.107 55.000 0.00 0.00 38.64 3.16
502 512 1.302949 CCGGCAAGGGAAGATCCAA 59.697 57.895 0.00 0.00 38.64 3.53
503 513 2.998097 CCGGCAAGGGAAGATCCA 59.002 61.111 0.00 0.00 38.64 3.41
513 523 3.726517 CACTTCGCACCCGGCAAG 61.727 66.667 0.00 0.00 45.17 4.01
525 535 1.301479 AACGAAGGCGACCCACTTC 60.301 57.895 0.00 0.00 41.64 3.01
526 536 1.597027 CAACGAAGGCGACCCACTT 60.597 57.895 0.00 0.00 41.64 3.16
527 537 2.030562 CAACGAAGGCGACCCACT 59.969 61.111 0.00 0.00 41.64 4.00
528 538 1.838568 GAACAACGAAGGCGACCCAC 61.839 60.000 0.00 0.00 41.64 4.61
529 539 1.595929 GAACAACGAAGGCGACCCA 60.596 57.895 0.00 0.00 41.64 4.51
530 540 2.664436 CGAACAACGAAGGCGACCC 61.664 63.158 0.00 0.00 45.77 4.46
531 541 2.851104 CGAACAACGAAGGCGACC 59.149 61.111 0.00 0.00 45.77 4.79
532 542 2.170273 GCGAACAACGAAGGCGAC 59.830 61.111 0.00 0.00 45.77 5.19
533 543 2.279584 TGCGAACAACGAAGGCGA 60.280 55.556 0.00 0.00 45.77 5.54
534 544 2.170985 CTGCGAACAACGAAGGCG 59.829 61.111 0.00 0.00 43.40 5.52
535 545 2.127232 GCTGCGAACAACGAAGGC 60.127 61.111 0.00 0.00 46.85 4.35
536 546 0.384725 CTTGCTGCGAACAACGAAGG 60.385 55.000 0.00 0.00 46.85 3.46
538 548 1.525197 CTACTTGCTGCGAACAACGAA 59.475 47.619 0.00 0.00 45.77 3.85
539 549 1.136690 CTACTTGCTGCGAACAACGA 58.863 50.000 0.00 0.00 45.77 3.85
540 550 0.859232 ACTACTTGCTGCGAACAACG 59.141 50.000 0.00 0.00 45.66 4.10
541 551 2.286833 TCAACTACTTGCTGCGAACAAC 59.713 45.455 0.00 0.00 0.00 3.32
542 552 2.286833 GTCAACTACTTGCTGCGAACAA 59.713 45.455 0.00 0.00 0.00 2.83
543 553 1.864711 GTCAACTACTTGCTGCGAACA 59.135 47.619 0.00 0.00 0.00 3.18
544 554 1.136611 CGTCAACTACTTGCTGCGAAC 60.137 52.381 0.00 0.00 0.00 3.95
545 555 1.136690 CGTCAACTACTTGCTGCGAA 58.863 50.000 0.00 0.00 0.00 4.70
546 556 0.031585 ACGTCAACTACTTGCTGCGA 59.968 50.000 0.00 0.00 0.00 5.10
547 557 0.859232 AACGTCAACTACTTGCTGCG 59.141 50.000 0.00 0.00 0.00 5.18
548 558 1.597663 ACAACGTCAACTACTTGCTGC 59.402 47.619 0.00 0.00 0.00 5.25
549 559 3.944422 AACAACGTCAACTACTTGCTG 57.056 42.857 0.00 0.00 0.00 4.41
550 560 6.872020 ACATATAACAACGTCAACTACTTGCT 59.128 34.615 0.00 0.00 0.00 3.91
551 561 7.057149 ACATATAACAACGTCAACTACTTGC 57.943 36.000 0.00 0.00 0.00 4.01
552 562 8.462143 AGACATATAACAACGTCAACTACTTG 57.538 34.615 0.00 0.00 0.00 3.16
583 593 8.028938 ACGTACCGTAGCTTTATAGAAGAAAAA 58.971 33.333 0.00 0.00 38.73 1.94
584 594 7.538575 ACGTACCGTAGCTTTATAGAAGAAAA 58.461 34.615 0.00 0.00 38.73 2.29
585 595 7.088589 ACGTACCGTAGCTTTATAGAAGAAA 57.911 36.000 0.00 0.00 38.73 2.52
586 596 6.683974 ACGTACCGTAGCTTTATAGAAGAA 57.316 37.500 0.00 0.00 38.73 2.52
587 597 7.786178 TTACGTACCGTAGCTTTATAGAAGA 57.214 36.000 0.00 0.00 43.21 2.87
588 598 9.455847 AAATTACGTACCGTAGCTTTATAGAAG 57.544 33.333 0.00 0.00 43.21 2.85
589 599 9.236691 CAAATTACGTACCGTAGCTTTATAGAA 57.763 33.333 0.00 0.00 43.21 2.10
590 600 7.379529 GCAAATTACGTACCGTAGCTTTATAGA 59.620 37.037 0.00 0.00 43.21 1.98
591 601 7.496584 GCAAATTACGTACCGTAGCTTTATAG 58.503 38.462 0.00 0.00 43.21 1.31
592 602 6.142161 CGCAAATTACGTACCGTAGCTTTATA 59.858 38.462 0.00 0.00 43.21 0.98
593 603 5.051508 CGCAAATTACGTACCGTAGCTTTAT 60.052 40.000 0.00 0.00 43.21 1.40
594 604 4.265085 CGCAAATTACGTACCGTAGCTTTA 59.735 41.667 0.00 0.00 43.21 1.85
595 605 3.061161 CGCAAATTACGTACCGTAGCTTT 59.939 43.478 0.00 0.10 43.21 3.51
596 606 2.599973 CGCAAATTACGTACCGTAGCTT 59.400 45.455 0.00 0.00 43.21 3.74
597 607 2.187707 CGCAAATTACGTACCGTAGCT 58.812 47.619 0.00 0.00 43.21 3.32
598 608 1.919918 ACGCAAATTACGTACCGTAGC 59.080 47.619 4.75 0.00 43.21 3.58
605 615 2.421775 TCGAGGGTACGCAAATTACGTA 59.578 45.455 12.95 9.00 44.55 3.57
607 617 1.912001 TCGAGGGTACGCAAATTACG 58.088 50.000 12.95 7.74 0.00 3.18
608 618 4.666928 TTTTCGAGGGTACGCAAATTAC 57.333 40.909 12.95 0.00 0.00 1.89
631 641 3.430453 TCATCGGCAAGGGAAGATTTTT 58.570 40.909 0.00 0.00 0.00 1.94
632 642 3.085952 TCATCGGCAAGGGAAGATTTT 57.914 42.857 0.00 0.00 0.00 1.82
633 643 2.806945 TCATCGGCAAGGGAAGATTT 57.193 45.000 0.00 0.00 0.00 2.17
634 644 4.137543 GTTATCATCGGCAAGGGAAGATT 58.862 43.478 0.00 0.00 0.00 2.40
755 765 2.234913 ATTACTGTGGACGTCCGGCC 62.235 60.000 28.70 19.06 45.60 6.13
758 768 1.082117 GCCATTACTGTGGACGTCCG 61.082 60.000 28.70 17.41 42.02 4.79
764 774 1.302949 GGGCAGCCATTACTGTGGA 59.697 57.895 15.19 0.00 42.02 4.02
767 777 0.322816 CTGTGGGCAGCCATTACTGT 60.323 55.000 15.19 0.00 39.96 3.55
768 778 0.035152 TCTGTGGGCAGCCATTACTG 60.035 55.000 15.19 12.65 42.29 2.74
769 779 0.035056 GTCTGTGGGCAGCCATTACT 60.035 55.000 15.19 0.00 42.29 2.24
979 997 4.803426 GCCTCGACTGGGCGTGAG 62.803 72.222 0.00 0.00 40.19 3.51
1034 1052 2.542595 CGAATATATAAATCCGGCGGCC 59.457 50.000 23.83 9.54 0.00 6.13
1037 1055 2.347292 GCGCGAATATATAAATCCGGCG 60.347 50.000 12.10 0.00 0.00 6.46
1038 1056 2.347292 CGCGCGAATATATAAATCCGGC 60.347 50.000 28.94 0.00 0.00 6.13
1039 1057 2.347292 GCGCGCGAATATATAAATCCGG 60.347 50.000 37.18 0.00 0.00 5.14
1041 1059 2.605818 TGGCGCGCGAATATATAAATCC 59.394 45.455 37.18 20.46 0.00 3.01
1043 1061 2.030457 GCTGGCGCGCGAATATATAAAT 59.970 45.455 37.18 0.00 0.00 1.40
1044 1062 1.392168 GCTGGCGCGCGAATATATAAA 59.608 47.619 37.18 5.80 0.00 1.40
1045 1063 0.996462 GCTGGCGCGCGAATATATAA 59.004 50.000 37.18 7.48 0.00 0.98
1084 1102 4.994201 TGCGTCGCGTCACTCACC 62.994 66.667 13.38 0.00 0.00 4.02
1104 1130 4.373116 ACTGGCAGTGTACGGGCG 62.373 66.667 21.37 0.00 39.31 6.13
1161 1209 1.830408 CTACCCTCTCCCTCTGCCG 60.830 68.421 0.00 0.00 0.00 5.69
1164 1212 0.466555 CGGTCTACCCTCTCCCTCTG 60.467 65.000 0.00 0.00 0.00 3.35
1165 1213 1.924352 CGGTCTACCCTCTCCCTCT 59.076 63.158 0.00 0.00 0.00 3.69
1166 1214 1.829096 GCGGTCTACCCTCTCCCTC 60.829 68.421 0.00 0.00 0.00 4.30
1167 1215 2.279408 GCGGTCTACCCTCTCCCT 59.721 66.667 0.00 0.00 0.00 4.20
1255 1303 1.596934 CACTACATGGTCCACCGCT 59.403 57.895 0.00 0.00 39.43 5.52
1337 1391 4.036804 GGACAATGCGCGGCACAA 62.037 61.111 8.83 0.00 43.04 3.33
1393 1447 4.539881 GACGCGGACGAGCTCCTC 62.540 72.222 12.47 6.13 43.93 3.71
1406 1460 3.843240 CTCGAGCAAAGCGGACGC 61.843 66.667 8.91 8.91 42.33 5.19
1407 1461 3.181967 CCTCGAGCAAAGCGGACG 61.182 66.667 6.99 0.00 0.00 4.79
1408 1462 1.355066 CTTCCTCGAGCAAAGCGGAC 61.355 60.000 6.99 0.00 0.00 4.79
1414 1468 3.794690 CTCGTCTTCCTCGAGCAAA 57.205 52.632 6.99 2.50 45.77 3.68
1426 1480 4.742649 TGCGCCTCCTCCTCGTCT 62.743 66.667 4.18 0.00 0.00 4.18
1536 1593 3.706373 TTGCAGCCTCCTCGTCCC 61.706 66.667 0.00 0.00 0.00 4.46
1537 1594 2.435059 GTTGCAGCCTCCTCGTCC 60.435 66.667 0.00 0.00 0.00 4.79
1538 1595 2.435059 GGTTGCAGCCTCCTCGTC 60.435 66.667 13.08 0.00 0.00 4.20
1639 1696 4.753662 CCGTCCCCGTCTCCTCCA 62.754 72.222 0.00 0.00 0.00 3.86
1733 1790 2.349755 GTAGTTCCCCAGCGGCAA 59.650 61.111 1.45 0.00 0.00 4.52
1975 2032 0.323629 ATGCCAAGCAAGCAAGCAAT 59.676 45.000 7.55 0.00 44.83 3.56
2003 2060 4.114794 GCAAGAGAAGCAAAGCAAGAAAA 58.885 39.130 0.00 0.00 0.00 2.29
2009 2066 0.313043 GCTGCAAGAGAAGCAAAGCA 59.687 50.000 0.00 0.00 46.44 3.91
2183 2241 3.568538 CAGATGCAGTTTGTTTACTGGC 58.431 45.455 5.97 0.00 44.50 4.85
2290 2349 6.007703 TGGTTTATTTAGTTTACCAGCTGCT 58.992 36.000 8.66 0.00 34.13 4.24
2297 2356 6.623549 GCCGGACTTGGTTTATTTAGTTTACC 60.624 42.308 5.05 0.00 0.00 2.85
2305 2367 7.340999 ACATATTTAGCCGGACTTGGTTTATTT 59.659 33.333 5.05 0.00 0.00 1.40
2325 2387 8.192774 CCAGATTCATTTTGCACACTACATATT 58.807 33.333 0.00 0.00 0.00 1.28
2326 2388 7.557358 TCCAGATTCATTTTGCACACTACATAT 59.443 33.333 0.00 0.00 0.00 1.78
2328 2390 5.711506 TCCAGATTCATTTTGCACACTACAT 59.288 36.000 0.00 0.00 0.00 2.29
2332 2394 5.302568 TCTTTCCAGATTCATTTTGCACACT 59.697 36.000 0.00 0.00 0.00 3.55
2333 2395 5.531634 TCTTTCCAGATTCATTTTGCACAC 58.468 37.500 0.00 0.00 0.00 3.82
2334 2396 5.775686 CTCTTTCCAGATTCATTTTGCACA 58.224 37.500 0.00 0.00 0.00 4.57
2335 2397 4.624452 GCTCTTTCCAGATTCATTTTGCAC 59.376 41.667 0.00 0.00 0.00 4.57
2336 2398 4.281435 TGCTCTTTCCAGATTCATTTTGCA 59.719 37.500 0.00 0.00 0.00 4.08
2337 2399 4.813027 TGCTCTTTCCAGATTCATTTTGC 58.187 39.130 0.00 0.00 0.00 3.68
2338 2400 5.862323 CACTGCTCTTTCCAGATTCATTTTG 59.138 40.000 0.00 0.00 34.47 2.44
2339 2401 5.566230 GCACTGCTCTTTCCAGATTCATTTT 60.566 40.000 0.00 0.00 34.47 1.82
2340 2402 4.082354 GCACTGCTCTTTCCAGATTCATTT 60.082 41.667 0.00 0.00 34.47 2.32
2341 2403 3.442977 GCACTGCTCTTTCCAGATTCATT 59.557 43.478 0.00 0.00 34.47 2.57
2342 2404 3.015327 GCACTGCTCTTTCCAGATTCAT 58.985 45.455 0.00 0.00 34.47 2.57
2343 2405 2.430465 GCACTGCTCTTTCCAGATTCA 58.570 47.619 0.00 0.00 34.47 2.57
2344 2406 1.396301 CGCACTGCTCTTTCCAGATTC 59.604 52.381 0.00 0.00 34.47 2.52
2345 2407 1.446907 CGCACTGCTCTTTCCAGATT 58.553 50.000 0.00 0.00 34.47 2.40
2346 2408 1.023513 GCGCACTGCTCTTTCCAGAT 61.024 55.000 0.30 0.00 41.73 2.90
2347 2409 1.669115 GCGCACTGCTCTTTCCAGA 60.669 57.895 0.30 0.00 41.73 3.86
2348 2410 2.866028 GCGCACTGCTCTTTCCAG 59.134 61.111 0.30 0.00 41.73 3.86
2409 2494 3.676049 GCACAGCAAAACCTTATTAGGCC 60.676 47.826 0.00 0.00 46.22 5.19
2457 2913 5.694910 GGTACATACACTACATACACCATGC 59.305 44.000 0.00 0.00 38.29 4.06
2500 2956 0.676736 GGGACAATCGGTTTTGGCAA 59.323 50.000 0.00 0.00 36.27 4.52
2506 2962 0.110486 ACTGCTGGGACAATCGGTTT 59.890 50.000 0.00 0.00 38.70 3.27
2516 2972 0.035881 CTTCTGCTGAACTGCTGGGA 59.964 55.000 1.33 2.36 33.58 4.37
2630 3087 3.880846 CCGCATGCGCTTTCCCTC 61.881 66.667 34.00 0.00 38.24 4.30
2638 3095 2.872337 CTTCTTTTCCCCGCATGCGC 62.872 60.000 34.00 0.00 38.24 6.09
2662 3119 3.836562 ACTACCTTGTATTTCCAGGTCGT 59.163 43.478 0.00 0.00 34.38 4.34
2802 3259 5.611796 TCATGTGCTTGAATTAGTGTGAC 57.388 39.130 0.00 0.00 0.00 3.67
2834 3291 9.758651 ATTTTTGTTATTTGGGTAGTGAACTTC 57.241 29.630 0.00 0.00 0.00 3.01
2840 3297 7.151308 TCTGCATTTTTGTTATTTGGGTAGTG 58.849 34.615 0.00 0.00 0.00 2.74
2866 3323 1.048160 TCATGCCTCAGCGTCCCATA 61.048 55.000 0.00 0.00 44.31 2.74
2901 3358 0.680061 AAACAGTCGACCCCAGTCTC 59.320 55.000 13.01 0.00 41.16 3.36
2909 3366 2.092211 CACGCATAGAAAACAGTCGACC 59.908 50.000 13.01 0.00 0.00 4.79
2910 3367 2.092211 CCACGCATAGAAAACAGTCGAC 59.908 50.000 7.70 7.70 0.00 4.20
2930 3389 1.448540 CCAGACGACCATGTGCTCC 60.449 63.158 0.00 0.00 0.00 4.70
2985 3444 4.410492 AGAAATTAGCAAGTCAACTGCG 57.590 40.909 0.00 0.00 0.00 5.18
3114 3579 1.597854 CCAGAACAGCGCCAAGACA 60.598 57.895 2.29 0.00 0.00 3.41
3115 3580 2.328099 CCCAGAACAGCGCCAAGAC 61.328 63.158 2.29 0.00 0.00 3.01
3116 3581 2.032528 CCCAGAACAGCGCCAAGA 59.967 61.111 2.29 0.00 0.00 3.02
3122 3587 4.785453 GGGCCTCCCAGAACAGCG 62.785 72.222 0.84 0.00 44.65 5.18
3358 3824 4.583073 GGTGGTTCAAGTTTTCTACCATGT 59.417 41.667 0.00 0.00 38.06 3.21
3367 3833 3.697542 GGTACACAGGTGGTTCAAGTTTT 59.302 43.478 4.24 0.00 34.19 2.43
3398 3864 5.046663 ACAGTGTTTGAAAAATGGACCAGTT 60.047 36.000 0.16 0.16 0.00 3.16
3400 3866 5.009854 ACAGTGTTTGAAAAATGGACCAG 57.990 39.130 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.