Multiple sequence alignment - TraesCS7B01G278400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G278400 chr7B 100.000 4936 0 0 1 4936 509570289 509565354 0.000000e+00 9116.0
1 TraesCS7B01G278400 chr7B 96.429 84 3 0 1922 2005 508189398 508189481 6.660000e-29 139.0
2 TraesCS7B01G278400 chr7A 88.434 2784 207 43 2221 4936 550302048 550299312 0.000000e+00 3251.0
3 TraesCS7B01G278400 chr7A 93.524 911 48 3 553 1463 550304034 550303135 0.000000e+00 1345.0
4 TraesCS7B01G278400 chr7A 90.431 418 32 5 1461 1873 550302868 550302454 1.210000e-150 544.0
5 TraesCS7B01G278400 chr7A 95.238 63 3 0 2007 2069 550302452 550302390 3.140000e-17 100.0
6 TraesCS7B01G278400 chr7A 84.375 96 7 7 450 539 550304175 550304082 2.450000e-13 87.9
7 TraesCS7B01G278400 chr7A 92.157 51 3 1 1871 1920 516148410 516148360 2.470000e-08 71.3
8 TraesCS7B01G278400 chr7D 89.344 1417 86 19 3574 4936 483921432 483920027 0.000000e+00 1720.0
9 TraesCS7B01G278400 chr7D 89.409 1388 100 21 2201 3577 483923104 483921753 0.000000e+00 1705.0
10 TraesCS7B01G278400 chr7D 94.481 1051 51 3 555 1600 483924566 483923518 0.000000e+00 1613.0
11 TraesCS7B01G278400 chr7D 93.064 173 8 1 1708 1876 483923442 483923270 2.950000e-62 250.0
12 TraesCS7B01G278400 chr7D 90.811 185 11 2 2013 2191 483923262 483923078 4.940000e-60 243.0
13 TraesCS7B01G278400 chr3D 82.927 205 31 4 1179 1381 442173333 442173535 1.090000e-41 182.0
14 TraesCS7B01G278400 chr3D 80.916 131 8 5 1879 2008 608466390 608466504 2.450000e-13 87.9
15 TraesCS7B01G278400 chr3B 82.439 205 32 4 1179 1381 579450896 579451098 5.080000e-40 176.0
16 TraesCS7B01G278400 chr3B 95.833 48 2 0 1873 1920 96842516 96842469 1.470000e-10 78.7
17 TraesCS7B01G278400 chr3A 81.951 205 33 4 1179 1381 583243125 583243327 2.360000e-38 171.0
18 TraesCS7B01G278400 chr5D 94.505 91 5 0 1922 2012 202429518 202429428 1.850000e-29 141.0
19 TraesCS7B01G278400 chr5D 91.765 85 7 0 1627 1711 28480034 28479950 8.680000e-23 119.0
20 TraesCS7B01G278400 chr5D 90.588 85 8 0 1627 1711 421531409 421531325 4.040000e-21 113.0
21 TraesCS7B01G278400 chr6A 96.429 84 3 0 1922 2005 457850385 457850468 6.660000e-29 139.0
22 TraesCS7B01G278400 chr4B 95.294 85 4 0 1922 2006 621424709 621424793 8.620000e-28 135.0
23 TraesCS7B01G278400 chr4B 83.824 136 15 5 1878 2008 535029757 535029624 6.710000e-24 122.0
24 TraesCS7B01G278400 chr4B 90.698 86 7 1 1627 1712 612214164 612214248 4.040000e-21 113.0
25 TraesCS7B01G278400 chr4B 95.556 45 2 0 1873 1917 356712624 356712668 6.850000e-09 73.1
26 TraesCS7B01G278400 chr1A 95.294 85 4 0 1922 2006 351606845 351606761 8.620000e-28 135.0
27 TraesCS7B01G278400 chr6B 91.000 100 5 4 1909 2005 200777227 200777325 1.110000e-26 132.0
28 TraesCS7B01G278400 chr6B 90.000 100 8 2 1911 2008 9058360 9058459 1.440000e-25 128.0
29 TraesCS7B01G278400 chr2B 93.023 86 6 0 1626 1711 247368537 247368622 5.190000e-25 126.0
30 TraesCS7B01G278400 chr5A 92.941 85 6 0 1627 1711 19105077 19104993 1.870000e-24 124.0
31 TraesCS7B01G278400 chr5A 86.250 80 6 5 1873 1950 688976186 688976262 1.140000e-11 82.4
32 TraesCS7B01G278400 chr5A 95.833 48 2 0 1874 1921 321667563 321667516 1.470000e-10 78.7
33 TraesCS7B01G278400 chr2A 85.366 123 13 3 1887 2005 727186548 727186669 6.710000e-24 122.0
34 TraesCS7B01G278400 chr2A 81.111 90 17 0 1289 1378 612835024 612834935 6.850000e-09 73.1
35 TraesCS7B01G278400 chr4A 90.805 87 8 0 1626 1712 570973515 570973601 3.120000e-22 117.0
36 TraesCS7B01G278400 chr1D 90.698 86 8 0 1627 1712 257002329 257002244 1.120000e-21 115.0
37 TraesCS7B01G278400 chr5B 90.588 85 8 0 1627 1711 20822245 20822329 4.040000e-21 113.0
38 TraesCS7B01G278400 chr5B 90.741 54 5 0 1867 1920 491863616 491863563 6.850000e-09 73.1
39 TraesCS7B01G278400 chr1B 81.443 97 18 0 1285 1381 615745056 615744960 4.100000e-11 80.5
40 TraesCS7B01G278400 chr1B 81.443 97 18 0 1285 1381 616132490 616132394 4.100000e-11 80.5
41 TraesCS7B01G278400 chr2D 81.111 90 17 0 1289 1378 471055944 471055855 6.850000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G278400 chr7B 509565354 509570289 4935 True 9116.00 9116 100.0000 1 4936 1 chr7B.!!$R1 4935
1 TraesCS7B01G278400 chr7A 550299312 550304175 4863 True 1065.58 3251 90.4004 450 4936 5 chr7A.!!$R2 4486
2 TraesCS7B01G278400 chr7D 483920027 483924566 4539 True 1106.20 1720 91.4218 555 4936 5 chr7D.!!$R1 4381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
780 818 0.178891 AAGCTTCCCTCCTCTCCACA 60.179 55.000 0.00 0.00 0.0 4.17 F
1463 1506 0.669932 AGTTTGCTCGCTCTGCTCTG 60.670 55.000 0.00 0.00 0.0 3.35 F
2651 3167 0.394938 TTCAGTTAGAAGGCCGCACA 59.605 50.000 0.00 0.00 0.0 4.57 F
3179 3695 1.270550 CCTTCATTCCAATATGCCGGC 59.729 52.381 22.73 22.73 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2314 0.035056 GTTGCTGGCATGTACTCCCT 60.035 55.000 0.00 0.0 0.00 4.20 R
3196 3712 1.210155 GTTGATGCGGGACACAAGC 59.790 57.895 0.00 0.0 0.00 4.01 R
3727 4575 0.036952 AGTGGCACAAGGATCTGACG 60.037 55.000 21.41 0.0 44.16 4.35 R
4051 4907 1.623311 TCGTCATTGTCCCAGATGTGT 59.377 47.619 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 8.951787 ATATGCATGTTTAACATTTTGCAGAT 57.048 26.923 23.10 21.45 42.56 2.90
124 125 7.579589 TGCATGTTTAACATTTTGCAGATAC 57.420 32.000 17.46 0.00 36.90 2.24
125 126 7.150640 TGCATGTTTAACATTTTGCAGATACA 58.849 30.769 17.46 0.00 36.90 2.29
126 127 7.818446 TGCATGTTTAACATTTTGCAGATACAT 59.182 29.630 17.46 0.00 36.90 2.29
127 128 8.111836 GCATGTTTAACATTTTGCAGATACATG 58.888 33.333 14.80 14.45 36.53 3.21
128 129 9.356433 CATGTTTAACATTTTGCAGATACATGA 57.644 29.630 7.97 0.00 40.74 3.07
130 131 9.926158 TGTTTAACATTTTGCAGATACATGATT 57.074 25.926 0.00 0.00 0.00 2.57
176 177 9.301897 ACTTTTCTATATCTATTTTCCCCATGC 57.698 33.333 0.00 0.00 0.00 4.06
177 178 9.300681 CTTTTCTATATCTATTTTCCCCATGCA 57.699 33.333 0.00 0.00 0.00 3.96
178 179 8.635765 TTTCTATATCTATTTTCCCCATGCAC 57.364 34.615 0.00 0.00 0.00 4.57
179 180 7.328404 TCTATATCTATTTTCCCCATGCACA 57.672 36.000 0.00 0.00 0.00 4.57
180 181 7.932134 TCTATATCTATTTTCCCCATGCACAT 58.068 34.615 0.00 0.00 0.00 3.21
181 182 8.393259 TCTATATCTATTTTCCCCATGCACATT 58.607 33.333 0.00 0.00 0.00 2.71
182 183 7.860649 ATATCTATTTTCCCCATGCACATTT 57.139 32.000 0.00 0.00 0.00 2.32
183 184 6.564557 ATCTATTTTCCCCATGCACATTTT 57.435 33.333 0.00 0.00 0.00 1.82
184 185 7.673641 ATCTATTTTCCCCATGCACATTTTA 57.326 32.000 0.00 0.00 0.00 1.52
185 186 7.673641 TCTATTTTCCCCATGCACATTTTAT 57.326 32.000 0.00 0.00 0.00 1.40
186 187 8.774546 TCTATTTTCCCCATGCACATTTTATA 57.225 30.769 0.00 0.00 0.00 0.98
187 188 9.206690 TCTATTTTCCCCATGCACATTTTATAA 57.793 29.630 0.00 0.00 0.00 0.98
190 191 9.697990 ATTTTCCCCATGCACATTTTATAATTT 57.302 25.926 0.00 0.00 0.00 1.82
191 192 9.525826 TTTTCCCCATGCACATTTTATAATTTT 57.474 25.926 0.00 0.00 0.00 1.82
192 193 9.525826 TTTCCCCATGCACATTTTATAATTTTT 57.474 25.926 0.00 0.00 0.00 1.94
193 194 8.503458 TCCCCATGCACATTTTATAATTTTTG 57.497 30.769 0.00 0.00 0.00 2.44
194 195 8.105829 TCCCCATGCACATTTTATAATTTTTGT 58.894 29.630 0.00 0.00 0.00 2.83
195 196 9.388506 CCCCATGCACATTTTATAATTTTTGTA 57.611 29.630 0.00 0.00 0.00 2.41
244 245 8.928270 ACACGTTTAACATTTACCAAAAATGA 57.072 26.923 15.35 0.00 39.36 2.57
245 246 9.367444 ACACGTTTAACATTTACCAAAAATGAA 57.633 25.926 15.35 2.92 39.36 2.57
291 292 9.982651 TTTTTGATGTTTAATTATTTCCGTGGA 57.017 25.926 0.00 0.00 0.00 4.02
529 532 3.494336 CGCGCTTCAGGAGGCAAG 61.494 66.667 5.56 0.00 32.40 4.01
530 533 2.359230 GCGCTTCAGGAGGCAAGT 60.359 61.111 0.00 0.00 32.40 3.16
531 534 2.394563 GCGCTTCAGGAGGCAAGTC 61.395 63.158 0.00 0.00 32.40 3.01
532 535 1.004560 CGCTTCAGGAGGCAAGTCA 60.005 57.895 4.26 0.00 32.40 3.41
533 536 1.018226 CGCTTCAGGAGGCAAGTCAG 61.018 60.000 4.26 0.00 32.40 3.51
534 537 1.304509 GCTTCAGGAGGCAAGTCAGC 61.305 60.000 0.00 0.00 33.19 4.26
544 547 2.268730 GCAAGTCAGCCATTTGTAGC 57.731 50.000 0.00 0.00 0.00 3.58
545 548 1.815003 GCAAGTCAGCCATTTGTAGCT 59.185 47.619 0.00 0.00 40.89 3.32
548 551 1.912043 AGTCAGCCATTTGTAGCTCCT 59.088 47.619 0.00 0.00 37.18 3.69
549 552 2.093235 AGTCAGCCATTTGTAGCTCCTC 60.093 50.000 0.00 0.00 37.18 3.71
550 553 1.908619 TCAGCCATTTGTAGCTCCTCA 59.091 47.619 0.00 0.00 37.18 3.86
551 554 2.093288 TCAGCCATTTGTAGCTCCTCAG 60.093 50.000 0.00 0.00 37.18 3.35
754 792 2.654404 GCACGCGGTAGATCGGTC 60.654 66.667 12.47 0.00 0.00 4.79
768 806 0.608640 TCGGTCTCTCCAAAGCTTCC 59.391 55.000 0.00 0.00 35.57 3.46
769 807 0.391793 CGGTCTCTCCAAAGCTTCCC 60.392 60.000 0.00 0.00 35.57 3.97
780 818 0.178891 AAGCTTCCCTCCTCTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
792 830 4.662961 TCCACAGTGAGCACCGCG 62.663 66.667 0.62 0.00 0.00 6.46
808 846 1.078759 CGCGCCCGATATCAATCTCC 61.079 60.000 0.00 0.00 36.29 3.71
812 850 2.492088 CGCCCGATATCAATCTCCTGTA 59.508 50.000 3.12 0.00 0.00 2.74
836 874 4.732355 GCTCCCTAGATTAGATTCGATCGC 60.732 50.000 11.09 0.00 0.00 4.58
907 950 2.159382 AGATTGGATTGGTTTCGCGTT 58.841 42.857 5.77 0.00 0.00 4.84
912 955 1.664874 GGATTGGTTTCGCGTTTGTCC 60.665 52.381 5.77 3.87 0.00 4.02
928 971 1.064463 TGTCCCTGATGCATTTCCTCC 60.064 52.381 0.00 0.00 0.00 4.30
937 980 3.228188 TGCATTTCCTCCACTCTGTTT 57.772 42.857 0.00 0.00 0.00 2.83
939 982 3.569701 TGCATTTCCTCCACTCTGTTTTC 59.430 43.478 0.00 0.00 0.00 2.29
942 985 2.550830 TCCTCCACTCTGTTTTCAGC 57.449 50.000 0.00 0.00 46.59 4.26
1013 1056 1.134371 GTCGAAGATGGAAGGGAAGGG 60.134 57.143 0.00 0.00 40.67 3.95
1056 1099 1.376553 GCTGAAGGAGGAGGTGCAC 60.377 63.158 8.80 8.80 0.00 4.57
1106 1149 3.102985 CAGCGACGACGAGGAGAT 58.897 61.111 12.29 0.00 42.66 2.75
1134 1177 2.279120 GACAGCGATGGCGAGGAG 60.279 66.667 5.32 0.00 46.35 3.69
1251 1294 3.984200 GACCTACGTGGAGGCGCAC 62.984 68.421 10.83 1.82 40.65 5.34
1269 1312 1.262640 ACGGCGAGGGTAACTGGAAT 61.263 55.000 16.62 0.00 0.00 3.01
1463 1506 0.669932 AGTTTGCTCGCTCTGCTCTG 60.670 55.000 0.00 0.00 0.00 3.35
1515 1827 5.816777 ACTTCATCTATTGCTCTTCTCTTGC 59.183 40.000 0.00 0.00 0.00 4.01
1534 1846 7.987458 TCTCTTGCTAGTTTAGATTGGTAATGG 59.013 37.037 0.00 0.00 0.00 3.16
1541 1853 6.924111 AGTTTAGATTGGTAATGGTTTGCTG 58.076 36.000 0.00 0.00 0.00 4.41
1542 1854 6.493458 AGTTTAGATTGGTAATGGTTTGCTGT 59.507 34.615 0.00 0.00 0.00 4.40
1553 1865 1.686052 GGTTTGCTGTGGTTGATTGGA 59.314 47.619 0.00 0.00 0.00 3.53
1604 1916 9.914834 AACAGTTTGCCTGGTTATATAGAATTA 57.085 29.630 0.00 0.00 38.15 1.40
1610 1922 8.771920 TGCCTGGTTATATAGAATTAATGTCG 57.228 34.615 0.00 0.00 0.00 4.35
1633 1945 6.492772 TCGTTTTCTCCTAATAGATACTCCCC 59.507 42.308 0.00 0.00 0.00 4.81
1635 1947 5.961399 TTCTCCTAATAGATACTCCCCCA 57.039 43.478 0.00 0.00 0.00 4.96
1640 1953 5.016031 TCCTAATAGATACTCCCCCAGTACC 59.984 48.000 0.00 0.00 40.60 3.34
1650 1963 6.262056 ACTCCCCCAGTACCAAAATATAAG 57.738 41.667 0.00 0.00 31.37 1.73
1664 1977 7.593644 ACCAAAATATAAGACGTTTTTGCAGTC 59.406 33.333 13.03 0.00 37.60 3.51
1683 1996 5.798910 CAGTCCAAATTGAACTGCAAAAAC 58.201 37.500 0.00 0.00 40.48 2.43
1686 1999 6.258507 AGTCCAAATTGAACTGCAAAAACATC 59.741 34.615 0.00 0.00 40.48 3.06
1705 2018 8.980481 AAACATCTTATATTTGGGTACAGAGG 57.020 34.615 0.00 0.00 0.00 3.69
1706 2019 7.691993 ACATCTTATATTTGGGTACAGAGGT 57.308 36.000 0.00 0.00 0.00 3.85
1721 2034 8.534496 GGGTACAGAGGTAGTAGTATTTTTGAA 58.466 37.037 0.00 0.00 0.00 2.69
1784 2101 1.695893 CTGAAGTGCCGGTATGTGCG 61.696 60.000 1.90 0.00 0.00 5.34
1864 2181 3.128349 GTTTGCTAACTCGTCCTTGACA 58.872 45.455 3.64 0.00 32.09 3.58
1885 2202 7.730364 GACATATGTCAAATATTCCCTTCGT 57.270 36.000 27.33 0.00 44.18 3.85
1886 2203 7.730364 ACATATGTCAAATATTCCCTTCGTC 57.270 36.000 1.41 0.00 0.00 4.20
1887 2204 6.710744 ACATATGTCAAATATTCCCTTCGTCC 59.289 38.462 1.41 0.00 0.00 4.79
1888 2205 3.881220 TGTCAAATATTCCCTTCGTCCC 58.119 45.455 0.00 0.00 0.00 4.46
1889 2206 3.264706 TGTCAAATATTCCCTTCGTCCCA 59.735 43.478 0.00 0.00 0.00 4.37
1890 2207 4.263550 TGTCAAATATTCCCTTCGTCCCAA 60.264 41.667 0.00 0.00 0.00 4.12
1891 2208 4.703093 GTCAAATATTCCCTTCGTCCCAAA 59.297 41.667 0.00 0.00 0.00 3.28
1892 2209 5.184287 GTCAAATATTCCCTTCGTCCCAAAA 59.816 40.000 0.00 0.00 0.00 2.44
1893 2210 5.955355 TCAAATATTCCCTTCGTCCCAAAAT 59.045 36.000 0.00 0.00 0.00 1.82
1894 2211 7.067737 GTCAAATATTCCCTTCGTCCCAAAATA 59.932 37.037 0.00 0.00 0.00 1.40
1895 2212 7.616150 TCAAATATTCCCTTCGTCCCAAAATAA 59.384 33.333 0.00 0.00 0.00 1.40
1896 2213 7.582667 AATATTCCCTTCGTCCCAAAATAAG 57.417 36.000 0.00 0.00 0.00 1.73
1897 2214 4.376225 TTCCCTTCGTCCCAAAATAAGT 57.624 40.909 0.00 0.00 0.00 2.24
1898 2215 3.681593 TCCCTTCGTCCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
1899 2216 3.073356 TCCCTTCGTCCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
1900 2217 3.439129 CCCTTCGTCCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
1901 2218 4.324267 CCTTCGTCCCAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
1902 2219 4.392138 CCTTCGTCCCAAAATAAGTGTCTC 59.608 45.833 0.00 0.00 0.00 3.36
1903 2220 4.610605 TCGTCCCAAAATAAGTGTCTCA 57.389 40.909 0.00 0.00 0.00 3.27
1904 2221 4.963373 TCGTCCCAAAATAAGTGTCTCAA 58.037 39.130 0.00 0.00 0.00 3.02
1905 2222 4.753107 TCGTCCCAAAATAAGTGTCTCAAC 59.247 41.667 0.00 0.00 0.00 3.18
1906 2223 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1907 2224 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1908 2225 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1909 2226 7.489160 GTCCCAAAATAAGTGTCTCAACTTTT 58.511 34.615 0.00 0.00 40.77 2.27
1910 2227 7.979537 GTCCCAAAATAAGTGTCTCAACTTTTT 59.020 33.333 0.00 0.00 40.77 1.94
1911 2228 9.191479 TCCCAAAATAAGTGTCTCAACTTTTTA 57.809 29.630 0.00 0.00 40.77 1.52
1912 2229 9.244799 CCCAAAATAAGTGTCTCAACTTTTTAC 57.755 33.333 0.00 0.00 40.77 2.01
1919 2236 8.803397 AAGTGTCTCAACTTTTTACTAACCTT 57.197 30.769 0.00 0.00 37.05 3.50
1920 2237 8.209917 AGTGTCTCAACTTTTTACTAACCTTG 57.790 34.615 0.00 0.00 0.00 3.61
1921 2238 6.910972 GTGTCTCAACTTTTTACTAACCTTGC 59.089 38.462 0.00 0.00 0.00 4.01
1922 2239 6.038936 TGTCTCAACTTTTTACTAACCTTGCC 59.961 38.462 0.00 0.00 0.00 4.52
1923 2240 6.038936 GTCTCAACTTTTTACTAACCTTGCCA 59.961 38.462 0.00 0.00 0.00 4.92
1924 2241 6.262273 TCTCAACTTTTTACTAACCTTGCCAG 59.738 38.462 0.00 0.00 0.00 4.85
1925 2242 6.123651 TCAACTTTTTACTAACCTTGCCAGA 58.876 36.000 0.00 0.00 0.00 3.86
1926 2243 6.603997 TCAACTTTTTACTAACCTTGCCAGAA 59.396 34.615 0.00 0.00 0.00 3.02
1927 2244 7.286775 TCAACTTTTTACTAACCTTGCCAGAAT 59.713 33.333 0.00 0.00 0.00 2.40
1928 2245 8.573035 CAACTTTTTACTAACCTTGCCAGAATA 58.427 33.333 0.00 0.00 0.00 1.75
1929 2246 8.700439 ACTTTTTACTAACCTTGCCAGAATAA 57.300 30.769 0.00 0.00 0.00 1.40
1930 2247 8.793592 ACTTTTTACTAACCTTGCCAGAATAAG 58.206 33.333 0.00 0.00 0.00 1.73
1931 2248 8.700439 TTTTTACTAACCTTGCCAGAATAAGT 57.300 30.769 0.00 0.00 0.00 2.24
1932 2249 7.681939 TTTACTAACCTTGCCAGAATAAGTG 57.318 36.000 0.00 0.00 0.00 3.16
1933 2250 5.242795 ACTAACCTTGCCAGAATAAGTGT 57.757 39.130 0.00 0.00 0.00 3.55
1934 2251 5.246307 ACTAACCTTGCCAGAATAAGTGTC 58.754 41.667 0.00 0.00 0.00 3.67
1935 2252 4.373156 AACCTTGCCAGAATAAGTGTCT 57.627 40.909 0.00 0.00 0.00 3.41
1936 2253 3.944087 ACCTTGCCAGAATAAGTGTCTC 58.056 45.455 0.00 0.00 0.00 3.36
1937 2254 3.327757 ACCTTGCCAGAATAAGTGTCTCA 59.672 43.478 0.00 0.00 0.00 3.27
1938 2255 4.202461 ACCTTGCCAGAATAAGTGTCTCAA 60.202 41.667 0.00 0.00 0.00 3.02
1939 2256 4.154918 CCTTGCCAGAATAAGTGTCTCAAC 59.845 45.833 0.00 0.00 0.00 3.18
1940 2257 4.623932 TGCCAGAATAAGTGTCTCAACT 57.376 40.909 0.00 0.00 0.00 3.16
1941 2258 4.973168 TGCCAGAATAAGTGTCTCAACTT 58.027 39.130 0.00 0.00 42.89 2.66
1942 2259 5.376625 TGCCAGAATAAGTGTCTCAACTTT 58.623 37.500 0.00 0.00 40.77 2.66
1943 2260 5.239306 TGCCAGAATAAGTGTCTCAACTTTG 59.761 40.000 0.00 0.00 40.77 2.77
1944 2261 5.239525 GCCAGAATAAGTGTCTCAACTTTGT 59.760 40.000 0.00 0.00 40.77 2.83
1945 2262 6.426937 GCCAGAATAAGTGTCTCAACTTTGTA 59.573 38.462 0.00 0.00 40.77 2.41
1946 2263 7.571428 GCCAGAATAAGTGTCTCAACTTTGTAC 60.571 40.741 0.00 0.00 40.77 2.90
1947 2264 7.657761 CCAGAATAAGTGTCTCAACTTTGTACT 59.342 37.037 0.00 0.00 40.77 2.73
1948 2265 9.692749 CAGAATAAGTGTCTCAACTTTGTACTA 57.307 33.333 0.00 0.00 40.77 1.82
1951 2268 8.828688 ATAAGTGTCTCAACTTTGTACTAACC 57.171 34.615 0.00 0.00 40.77 2.85
1952 2269 6.481434 AGTGTCTCAACTTTGTACTAACCT 57.519 37.500 0.00 0.00 0.00 3.50
1953 2270 6.885922 AGTGTCTCAACTTTGTACTAACCTT 58.114 36.000 0.00 0.00 0.00 3.50
1954 2271 8.015185 AGTGTCTCAACTTTGTACTAACCTTA 57.985 34.615 0.00 0.00 0.00 2.69
1955 2272 8.142551 AGTGTCTCAACTTTGTACTAACCTTAG 58.857 37.037 0.00 0.00 36.82 2.18
1956 2273 7.924947 GTGTCTCAACTTTGTACTAACCTTAGT 59.075 37.037 3.29 3.29 45.39 2.24
1957 2274 9.135189 TGTCTCAACTTTGTACTAACCTTAGTA 57.865 33.333 1.45 1.45 43.36 1.82
1981 2298 7.801716 ACAAAATTGTACTAAGCTTGAGACA 57.198 32.000 9.86 7.12 40.16 3.41
1982 2299 7.639945 ACAAAATTGTACTAAGCTTGAGACAC 58.360 34.615 9.86 7.18 40.16 3.67
1983 2300 7.499232 ACAAAATTGTACTAAGCTTGAGACACT 59.501 33.333 9.86 1.62 40.16 3.55
1984 2301 8.345565 CAAAATTGTACTAAGCTTGAGACACTT 58.654 33.333 9.86 7.57 0.00 3.16
1985 2302 9.555727 AAAATTGTACTAAGCTTGAGACACTTA 57.444 29.630 9.86 0.00 0.00 2.24
1986 2303 9.726438 AAATTGTACTAAGCTTGAGACACTTAT 57.274 29.630 9.86 0.00 0.00 1.73
1987 2304 9.726438 AATTGTACTAAGCTTGAGACACTTATT 57.274 29.630 9.86 4.54 0.00 1.40
1988 2305 9.726438 ATTGTACTAAGCTTGAGACACTTATTT 57.274 29.630 9.86 0.00 0.00 1.40
1989 2306 9.555727 TTGTACTAAGCTTGAGACACTTATTTT 57.444 29.630 9.86 0.00 0.00 1.82
1990 2307 8.988934 TGTACTAAGCTTGAGACACTTATTTTG 58.011 33.333 9.86 0.00 0.00 2.44
1991 2308 7.440523 ACTAAGCTTGAGACACTTATTTTGG 57.559 36.000 9.86 0.00 0.00 3.28
1992 2309 5.712152 AAGCTTGAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
1993 2310 4.985538 AGCTTGAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
1994 2311 5.574188 AGCTTGAGACACTTATTTTGGGAT 58.426 37.500 0.00 0.00 0.00 3.85
1995 2312 5.416952 AGCTTGAGACACTTATTTTGGGATG 59.583 40.000 0.00 0.00 0.00 3.51
1996 2313 5.393461 GCTTGAGACACTTATTTTGGGATGG 60.393 44.000 0.00 0.00 0.00 3.51
1997 2314 5.512942 TGAGACACTTATTTTGGGATGGA 57.487 39.130 0.00 0.00 0.00 3.41
1998 2315 5.500234 TGAGACACTTATTTTGGGATGGAG 58.500 41.667 0.00 0.00 0.00 3.86
1999 2316 4.860022 AGACACTTATTTTGGGATGGAGG 58.140 43.478 0.00 0.00 0.00 4.30
2000 2317 3.954258 GACACTTATTTTGGGATGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
2001 2318 3.596046 ACACTTATTTTGGGATGGAGGGA 59.404 43.478 0.00 0.00 0.00 4.20
2002 2319 4.210331 CACTTATTTTGGGATGGAGGGAG 58.790 47.826 0.00 0.00 0.00 4.30
2003 2320 3.858638 ACTTATTTTGGGATGGAGGGAGT 59.141 43.478 0.00 0.00 0.00 3.85
2004 2321 5.043762 ACTTATTTTGGGATGGAGGGAGTA 58.956 41.667 0.00 0.00 0.00 2.59
2005 2322 3.953542 ATTTTGGGATGGAGGGAGTAC 57.046 47.619 0.00 0.00 0.00 2.73
2009 2326 0.398318 GGGATGGAGGGAGTACATGC 59.602 60.000 0.00 0.00 32.96 4.06
2027 2344 9.184523 AGTACATGCCAGCAACTTTTATTTATA 57.815 29.630 0.00 0.00 0.00 0.98
2062 2379 1.285280 ATTGATGGAAGGGGTCGACA 58.715 50.000 18.91 0.00 0.00 4.35
2077 2394 3.545633 GTCGACAACACTTGCTGAATTC 58.454 45.455 11.55 0.00 0.00 2.17
2111 2433 9.189723 GTTTATATATACGACTCTTTGGGTGAC 57.810 37.037 0.00 0.00 0.00 3.67
2301 2815 5.692115 TTGGTGATCAACTAGCATTCCTA 57.308 39.130 12.94 0.00 0.00 2.94
2353 2867 8.141909 GGTTTTGCTTCTTATCAAGTAGGTTTT 58.858 33.333 0.00 0.00 0.00 2.43
2403 2917 5.068855 TGTCATTTGTCACCAACAATGATGT 59.931 36.000 1.30 0.00 46.94 3.06
2415 2929 8.991026 CACCAACAATGATGTCATATTTGTTTT 58.009 29.630 17.03 9.02 39.40 2.43
2476 2990 8.099537 ACATTGGCATACATTGTTTAATTTCCA 58.900 29.630 0.00 0.00 39.86 3.53
2535 3049 5.601662 TCCGAAATCAGAATATCCTGTCAC 58.398 41.667 0.00 0.00 35.71 3.67
2543 3057 5.105351 TCAGAATATCCTGTCACGACACATT 60.105 40.000 0.00 0.00 36.21 2.71
2651 3167 0.394938 TTCAGTTAGAAGGCCGCACA 59.605 50.000 0.00 0.00 0.00 4.57
2686 3202 8.887036 ATTAAGAATTTTTGGAACACCAGAAC 57.113 30.769 0.00 0.00 39.29 3.01
2696 3212 2.736670 ACACCAGAACAAAGAGGCTT 57.263 45.000 0.00 0.00 0.00 4.35
2714 3230 3.971245 CTTCAGAAAGCTGGTCTAGGT 57.029 47.619 0.02 0.00 42.53 3.08
2732 3248 6.763610 GTCTAGGTCTTTATCCAGATGGTTTG 59.236 42.308 0.00 0.00 36.34 2.93
2742 3258 2.614057 CCAGATGGTTTGTTATCTCGGC 59.386 50.000 0.00 0.00 31.53 5.54
2800 3316 2.281276 ACGTGGGAAGAAACGGCC 60.281 61.111 0.00 0.00 43.96 6.13
2801 3317 3.419759 CGTGGGAAGAAACGGCCG 61.420 66.667 26.86 26.86 36.17 6.13
2830 3346 1.815003 CTCACAGGGAAATGGTCTTGC 59.185 52.381 0.00 0.00 0.00 4.01
2951 3467 5.708230 TGACATTAATTACCCTTTGAAGCGT 59.292 36.000 0.00 0.00 0.00 5.07
2987 3503 3.568853 GCATAGTATCAGACTACGGTGGT 59.431 47.826 0.00 0.00 43.56 4.16
3029 3545 2.672098 TCTAATGAGACTGAGGAGGCC 58.328 52.381 0.00 0.00 0.00 5.19
3048 3564 4.225942 AGGCCTCTTACAATGATCTCAACA 59.774 41.667 0.00 0.00 0.00 3.33
3138 3654 4.417426 CCTATTTCTGGGAACATACCGT 57.583 45.455 0.00 0.00 41.51 4.83
3139 3655 4.127171 CCTATTTCTGGGAACATACCGTG 58.873 47.826 0.00 0.00 41.51 4.94
3179 3695 1.270550 CCTTCATTCCAATATGCCGGC 59.729 52.381 22.73 22.73 0.00 6.13
3196 3712 2.138320 CGGCTATGATACAAGCACCAG 58.862 52.381 0.00 0.00 40.61 4.00
3240 3759 4.654091 CCTGAACAGGTTGACAACATTT 57.346 40.909 19.58 8.98 43.61 2.32
3306 3825 4.058124 TCACTTCTCAAAACACTGATCCG 58.942 43.478 0.00 0.00 0.00 4.18
3307 3826 4.058124 CACTTCTCAAAACACTGATCCGA 58.942 43.478 0.00 0.00 0.00 4.55
3308 3827 4.692625 CACTTCTCAAAACACTGATCCGAT 59.307 41.667 0.00 0.00 0.00 4.18
3309 3828 4.692625 ACTTCTCAAAACACTGATCCGATG 59.307 41.667 0.00 0.00 0.00 3.84
3310 3829 4.535526 TCTCAAAACACTGATCCGATGA 57.464 40.909 0.00 0.00 0.00 2.92
3311 3830 4.893608 TCTCAAAACACTGATCCGATGAA 58.106 39.130 0.00 0.00 0.00 2.57
3312 3831 5.491070 TCTCAAAACACTGATCCGATGAAT 58.509 37.500 0.00 0.00 0.00 2.57
3348 3867 1.568597 CATGGATTTGGGGTCCCTACA 59.431 52.381 8.15 0.00 34.76 2.74
3385 3904 7.032377 GAGTTTGACTCAGAACTTCCATTTT 57.968 36.000 3.33 0.00 44.45 1.82
3388 3907 6.377327 TTGACTCAGAACTTCCATTTTCAC 57.623 37.500 0.00 0.00 0.00 3.18
3392 3911 5.829924 ACTCAGAACTTCCATTTTCACATGT 59.170 36.000 0.00 0.00 0.00 3.21
3398 3917 6.096673 ACTTCCATTTTCACATGTTTACCC 57.903 37.500 0.00 0.00 0.00 3.69
3401 3920 7.507616 ACTTCCATTTTCACATGTTTACCCTTA 59.492 33.333 0.00 0.00 0.00 2.69
3410 3929 5.529430 CACATGTTTACCCTTATATTCCGCA 59.471 40.000 0.00 0.00 0.00 5.69
3418 3937 4.202264 ACCCTTATATTCCGCACTCTTCAG 60.202 45.833 0.00 0.00 0.00 3.02
3453 3972 6.935208 ACAATACCCTTGAGTACAGTTCTTTC 59.065 38.462 0.00 0.00 0.00 2.62
3545 4065 9.793252 TCAGATACAACTTAACCTATCGTTAAC 57.207 33.333 0.00 0.00 41.10 2.01
3552 4072 2.634982 ACCTATCGTTAACGTTCGCA 57.365 45.000 25.98 8.31 40.80 5.10
3556 4076 4.500477 ACCTATCGTTAACGTTCGCATAAC 59.500 41.667 25.98 2.04 40.80 1.89
3562 4082 5.784625 TCGTTAACGTTCGCATAACATTTTC 59.215 36.000 25.98 0.00 40.80 2.29
3563 4083 5.001819 CGTTAACGTTCGCATAACATTTTCC 59.998 40.000 19.75 0.00 31.45 3.13
3568 4088 5.583061 ACGTTCGCATAACATTTTCCTGATA 59.417 36.000 0.46 0.00 0.00 2.15
3704 4552 5.119931 TGGACAACAAACATAATGCAGAC 57.880 39.130 0.00 0.00 0.00 3.51
3710 4558 8.915871 ACAACAAACATAATGCAGACATATTC 57.084 30.769 0.00 0.00 34.62 1.75
3713 4561 7.709947 ACAAACATAATGCAGACATATTCCAG 58.290 34.615 0.00 0.00 34.62 3.86
3743 4591 1.808411 TTTCGTCAGATCCTTGTGCC 58.192 50.000 0.00 0.00 0.00 5.01
3746 4594 0.036952 CGTCAGATCCTTGTGCCACT 60.037 55.000 0.00 0.00 0.00 4.00
3808 4656 3.259374 ACACACTCAGAGTATCAACCCAG 59.741 47.826 1.67 0.00 37.82 4.45
3840 4688 9.463443 GTCCACTTAATGCATTATTTTATGGAC 57.537 33.333 28.98 28.98 40.91 4.02
3858 4706 3.801050 TGGACATTTTTGCAATGACGTTG 59.199 39.130 0.00 2.84 40.90 4.10
3879 4727 3.015327 GCATTATCAGCCAGGGATGATC 58.985 50.000 21.26 4.95 46.68 2.92
3880 4728 3.560668 GCATTATCAGCCAGGGATGATCA 60.561 47.826 21.26 12.17 46.68 2.92
3881 4729 4.856509 CATTATCAGCCAGGGATGATCAT 58.143 43.478 21.26 13.88 46.68 2.45
3884 4732 1.697982 TCAGCCAGGGATGATCATCAG 59.302 52.381 31.49 21.42 39.54 2.90
3885 4733 1.697982 CAGCCAGGGATGATCATCAGA 59.302 52.381 31.49 0.00 39.54 3.27
3886 4734 1.698532 AGCCAGGGATGATCATCAGAC 59.301 52.381 31.49 21.92 39.54 3.51
3887 4735 1.698532 GCCAGGGATGATCATCAGACT 59.301 52.381 31.49 23.46 39.54 3.24
3888 4736 2.550423 GCCAGGGATGATCATCAGACTG 60.550 54.545 31.49 30.03 39.54 3.51
3910 4764 4.699735 TGTTTCCAGTAATGGCATACACAG 59.300 41.667 3.77 0.00 0.00 3.66
3917 4771 5.291858 CAGTAATGGCATACACAGTACACAG 59.708 44.000 0.00 0.00 40.66 3.66
3924 4778 2.691409 ACACAGTACACAGCACTTGT 57.309 45.000 0.00 0.00 41.94 3.16
3934 4788 4.005650 ACACAGCACTTGTCTGGATATTG 58.994 43.478 0.00 0.00 38.16 1.90
3936 4790 4.696877 CACAGCACTTGTCTGGATATTGAA 59.303 41.667 0.00 0.00 38.16 2.69
3938 4792 5.182001 ACAGCACTTGTCTGGATATTGAAAC 59.818 40.000 0.00 0.00 33.87 2.78
3960 4814 9.113876 GAAACGTAAGAACAAAATTCATAGTGG 57.886 33.333 0.00 0.00 43.62 4.00
3966 4820 8.409358 AAGAACAAAATTCATAGTGGCTACTT 57.591 30.769 8.46 0.00 38.36 2.24
4028 4884 5.722263 TCGTTATTTTAGGACAACGATGGA 58.278 37.500 4.46 0.00 45.42 3.41
4032 4888 7.480542 CGTTATTTTAGGACAACGATGGAAAAG 59.519 37.037 0.00 0.00 44.85 2.27
4051 4907 9.567776 TGGAAAAGATTAAACTCTACAACATCA 57.432 29.630 0.00 0.00 0.00 3.07
4052 4908 9.827411 GGAAAAGATTAAACTCTACAACATCAC 57.173 33.333 0.00 0.00 0.00 3.06
4083 4953 4.497507 GGACAATGACGACGATGATGACTA 60.498 45.833 0.00 0.00 0.00 2.59
4107 4977 5.423610 ACAGTTTATGCAGTCATAGTCTCCT 59.576 40.000 0.00 0.00 36.60 3.69
4117 4987 7.070447 TGCAGTCATAGTCTCCTGATTTTATCT 59.930 37.037 0.00 0.00 0.00 1.98
4119 4989 8.637099 CAGTCATAGTCTCCTGATTTTATCTCA 58.363 37.037 0.00 0.00 0.00 3.27
4141 5011 7.613022 TCTCAAGAACCATTATTTCTGAAGCAT 59.387 33.333 0.00 0.00 33.46 3.79
4210 5082 6.593268 TGTGAACACATTCCATTCATTCAT 57.407 33.333 3.39 0.00 36.21 2.57
4211 5083 7.700022 TGTGAACACATTCCATTCATTCATA 57.300 32.000 3.39 0.00 36.21 2.15
4212 5084 8.296211 TGTGAACACATTCCATTCATTCATAT 57.704 30.769 3.39 0.00 36.21 1.78
4213 5085 8.751242 TGTGAACACATTCCATTCATTCATATT 58.249 29.630 3.39 0.00 36.21 1.28
4214 5086 9.027129 GTGAACACATTCCATTCATTCATATTG 57.973 33.333 0.00 0.00 34.98 1.90
4268 5140 8.738645 ATTGAGATGTTCCTTAGTGTTAATCC 57.261 34.615 0.00 0.00 0.00 3.01
4272 5144 9.832445 GAGATGTTCCTTAGTGTTAATCCATTA 57.168 33.333 0.00 0.00 0.00 1.90
4281 5153 9.755064 CTTAGTGTTAATCCATTACTTTTGTCG 57.245 33.333 0.00 0.00 0.00 4.35
4312 5184 7.760131 ATTATGAAAATGAAACATGGCTTCG 57.240 32.000 0.00 0.00 0.00 3.79
4313 5185 3.316283 TGAAAATGAAACATGGCTTCGC 58.684 40.909 0.00 0.00 0.00 4.70
4383 5255 5.711506 TCAGCCATGAAATTTCTCTTTGCTA 59.288 36.000 18.64 0.00 30.61 3.49
4401 5273 4.793071 TGCTATGTTTTGTCATTGGAACG 58.207 39.130 0.00 0.00 0.00 3.95
4407 5279 3.804518 TTTGTCATTGGAACGATCACG 57.195 42.857 0.00 0.00 45.75 4.35
4433 5305 5.047660 GCCAAGATTTGTGGTTGTATGGTAA 60.048 40.000 0.00 0.00 38.50 2.85
4454 5326 9.952030 TGGTAATTTTAGTTACATGAGACATGA 57.048 29.630 16.86 0.57 36.51 3.07
4569 5452 9.764363 GATGATAATACTGTATGTTCAAGGTCA 57.236 33.333 13.61 5.95 0.00 4.02
4577 5460 5.294356 TGTATGTTCAAGGTCACAGTACAC 58.706 41.667 0.00 0.00 0.00 2.90
4580 5463 3.936453 TGTTCAAGGTCACAGTACACAAC 59.064 43.478 0.00 0.00 0.00 3.32
4621 5504 4.217118 CACTTTTGCCAACTTAGAGCTCAT 59.783 41.667 17.77 3.63 0.00 2.90
4863 5763 2.206635 GCTTCCTAGCAGGCTCTCA 58.793 57.895 0.00 0.00 46.95 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 8.951787 ATCTGCAAAATGTTAAACATGCATAT 57.048 26.923 0.00 0.00 39.81 1.78
98 99 9.299963 GTATCTGCAAAATGTTAAACATGCATA 57.700 29.630 0.00 0.00 39.81 3.14
99 100 7.818446 TGTATCTGCAAAATGTTAAACATGCAT 59.182 29.630 0.00 0.00 39.81 3.96
100 101 7.150640 TGTATCTGCAAAATGTTAAACATGCA 58.849 30.769 0.00 0.00 38.74 3.96
101 102 7.579589 TGTATCTGCAAAATGTTAAACATGC 57.420 32.000 0.00 0.00 37.97 4.06
102 103 9.356433 TCATGTATCTGCAAAATGTTAAACATG 57.644 29.630 11.70 11.70 37.97 3.21
104 105 9.926158 AATCATGTATCTGCAAAATGTTAAACA 57.074 25.926 0.00 0.00 0.00 2.83
150 151 9.301897 GCATGGGGAAAATAGATATAGAAAAGT 57.698 33.333 0.00 0.00 0.00 2.66
151 152 9.300681 TGCATGGGGAAAATAGATATAGAAAAG 57.699 33.333 0.00 0.00 0.00 2.27
152 153 9.077885 GTGCATGGGGAAAATAGATATAGAAAA 57.922 33.333 0.00 0.00 0.00 2.29
153 154 8.224025 TGTGCATGGGGAAAATAGATATAGAAA 58.776 33.333 0.00 0.00 0.00 2.52
154 155 7.754624 TGTGCATGGGGAAAATAGATATAGAA 58.245 34.615 0.00 0.00 0.00 2.10
155 156 7.328404 TGTGCATGGGGAAAATAGATATAGA 57.672 36.000 0.00 0.00 0.00 1.98
156 157 8.585471 AATGTGCATGGGGAAAATAGATATAG 57.415 34.615 0.00 0.00 0.00 1.31
157 158 8.954834 AAATGTGCATGGGGAAAATAGATATA 57.045 30.769 0.00 0.00 0.00 0.86
158 159 7.860649 AAATGTGCATGGGGAAAATAGATAT 57.139 32.000 0.00 0.00 0.00 1.63
159 160 7.673641 AAAATGTGCATGGGGAAAATAGATA 57.326 32.000 0.00 0.00 0.00 1.98
160 161 6.564557 AAAATGTGCATGGGGAAAATAGAT 57.435 33.333 0.00 0.00 0.00 1.98
161 162 7.673641 ATAAAATGTGCATGGGGAAAATAGA 57.326 32.000 0.00 0.00 0.00 1.98
164 165 9.697990 AAATTATAAAATGTGCATGGGGAAAAT 57.302 25.926 0.00 0.00 0.00 1.82
165 166 9.525826 AAAATTATAAAATGTGCATGGGGAAAA 57.474 25.926 0.00 0.00 0.00 2.29
166 167 9.525826 AAAAATTATAAAATGTGCATGGGGAAA 57.474 25.926 0.00 0.00 0.00 3.13
167 168 8.954350 CAAAAATTATAAAATGTGCATGGGGAA 58.046 29.630 0.00 0.00 0.00 3.97
168 169 8.105829 ACAAAAATTATAAAATGTGCATGGGGA 58.894 29.630 0.00 0.00 0.00 4.81
169 170 8.278729 ACAAAAATTATAAAATGTGCATGGGG 57.721 30.769 0.00 0.00 0.00 4.96
219 220 8.928270 TCATTTTTGGTAAATGTTAAACGTGT 57.072 26.923 9.33 0.00 38.44 4.49
265 266 9.982651 TCCACGGAAATAATTAAACATCAAAAA 57.017 25.926 0.00 0.00 0.00 1.94
471 472 4.744631 CCAAAAGCGCTTATTTTCACAGTT 59.255 37.500 25.33 6.83 0.00 3.16
473 474 3.674753 CCCAAAAGCGCTTATTTTCACAG 59.325 43.478 25.33 2.62 0.00 3.66
476 477 2.611722 GGCCCAAAAGCGCTTATTTTCA 60.612 45.455 25.33 0.00 0.00 2.69
482 483 3.059386 CCGGCCCAAAAGCGCTTA 61.059 61.111 25.33 0.00 0.00 3.09
513 516 2.359230 ACTTGCCTCCTGAAGCGC 60.359 61.111 0.00 0.00 0.00 5.92
527 530 2.307098 AGGAGCTACAAATGGCTGACTT 59.693 45.455 0.00 0.00 43.85 3.01
528 531 1.912043 AGGAGCTACAAATGGCTGACT 59.088 47.619 0.00 0.00 43.85 3.41
529 532 2.284190 GAGGAGCTACAAATGGCTGAC 58.716 52.381 0.00 0.00 43.85 3.51
530 533 1.908619 TGAGGAGCTACAAATGGCTGA 59.091 47.619 0.00 0.00 43.85 4.26
531 534 2.093288 TCTGAGGAGCTACAAATGGCTG 60.093 50.000 0.00 0.00 43.85 4.85
533 536 2.698855 TCTGAGGAGCTACAAATGGC 57.301 50.000 0.00 0.00 0.00 4.40
534 537 4.326826 TGTTTCTGAGGAGCTACAAATGG 58.673 43.478 0.00 0.00 0.00 3.16
536 539 6.479884 AGAATGTTTCTGAGGAGCTACAAAT 58.520 36.000 0.00 0.00 38.91 2.32
537 540 5.869579 AGAATGTTTCTGAGGAGCTACAAA 58.130 37.500 0.00 0.00 38.91 2.83
550 553 3.308046 GGGAGAAGAGGCAGAATGTTTCT 60.308 47.826 0.00 0.00 41.70 2.52
551 554 3.013219 GGGAGAAGAGGCAGAATGTTTC 58.987 50.000 0.00 0.00 39.31 2.78
565 603 1.936547 GAAATGTAGCGCTGGGAGAAG 59.063 52.381 22.90 0.00 0.00 2.85
570 608 1.154205 CCGAGAAATGTAGCGCTGGG 61.154 60.000 22.90 0.00 0.00 4.45
754 792 1.209261 GAGGAGGGAAGCTTTGGAGAG 59.791 57.143 0.00 0.00 0.00 3.20
768 806 0.902048 TGCTCACTGTGGAGAGGAGG 60.902 60.000 8.11 0.00 37.05 4.30
769 807 0.246086 GTGCTCACTGTGGAGAGGAG 59.754 60.000 8.11 0.00 37.05 3.69
792 830 3.677424 GCTACAGGAGATTGATATCGGGC 60.677 52.174 0.00 0.00 35.85 6.13
798 836 4.477536 AGGGAGCTACAGGAGATTGATA 57.522 45.455 0.00 0.00 0.00 2.15
808 846 5.941058 TCGAATCTAATCTAGGGAGCTACAG 59.059 44.000 0.00 0.00 0.00 2.74
812 850 4.638421 CGATCGAATCTAATCTAGGGAGCT 59.362 45.833 10.26 0.00 0.00 4.09
836 874 7.013083 TCCAACCAAAACCAATTCAATTCAATG 59.987 33.333 0.00 0.00 0.00 2.82
907 950 2.621407 GGAGGAAATGCATCAGGGACAA 60.621 50.000 0.00 0.00 0.00 3.18
912 955 2.092538 AGAGTGGAGGAAATGCATCAGG 60.093 50.000 0.00 0.00 0.00 3.86
928 971 3.499918 CCTACCAAGCTGAAAACAGAGTG 59.500 47.826 0.00 0.00 0.00 3.51
937 980 2.046314 GCGCCCTACCAAGCTGAA 60.046 61.111 0.00 0.00 0.00 3.02
995 1038 0.464554 GCCCTTCCCTTCCATCTTCG 60.465 60.000 0.00 0.00 0.00 3.79
1101 1144 0.452184 TGTCGTCAGCTTCGATCTCC 59.548 55.000 12.76 2.80 39.45 3.71
1116 1159 4.193334 TCCTCGCCATCGCTGTCG 62.193 66.667 0.00 0.00 35.26 4.35
1125 1168 2.364317 CCTTCCTCCTCCTCGCCA 60.364 66.667 0.00 0.00 0.00 5.69
1251 1294 0.529992 GATTCCAGTTACCCTCGCCG 60.530 60.000 0.00 0.00 0.00 6.46
1269 1312 2.283529 GGCGTTCCTCTGGACCTGA 61.284 63.158 0.64 0.64 0.00 3.86
1463 1506 3.497118 CCGATCGATCTAGAAGCATGTC 58.503 50.000 22.43 0.00 0.00 3.06
1515 1827 8.184192 CAGCAAACCATTACCAATCTAAACTAG 58.816 37.037 0.00 0.00 0.00 2.57
1534 1846 3.665745 ATCCAATCAACCACAGCAAAC 57.334 42.857 0.00 0.00 0.00 2.93
1541 1853 1.194218 CCCCCAATCCAATCAACCAC 58.806 55.000 0.00 0.00 0.00 4.16
1542 1854 1.088269 TCCCCCAATCCAATCAACCA 58.912 50.000 0.00 0.00 0.00 3.67
1553 1865 0.779997 AAGAGCAGTGTTCCCCCAAT 59.220 50.000 3.01 0.00 0.00 3.16
1604 1916 9.968870 GAGTATCTATTAGGAGAAAACGACATT 57.031 33.333 0.00 0.00 0.00 2.71
1610 1922 6.557633 TGGGGGAGTATCTATTAGGAGAAAAC 59.442 42.308 0.00 0.00 33.73 2.43
1629 1941 5.163280 CGTCTTATATTTTGGTACTGGGGGA 60.163 44.000 0.00 0.00 0.00 4.81
1633 1945 9.337091 CAAAAACGTCTTATATTTTGGTACTGG 57.663 33.333 11.33 0.00 38.47 4.00
1635 1947 8.569641 TGCAAAAACGTCTTATATTTTGGTACT 58.430 29.630 17.78 0.00 41.02 2.73
1640 1953 7.593273 TGGACTGCAAAAACGTCTTATATTTTG 59.407 33.333 13.82 13.82 42.66 2.44
1650 1963 4.109050 TCAATTTGGACTGCAAAAACGTC 58.891 39.130 0.00 0.00 0.00 4.34
1664 1977 6.607735 AGATGTTTTTGCAGTTCAATTTGG 57.392 33.333 0.00 0.00 34.12 3.28
1683 1996 8.871125 ACTACCTCTGTACCCAAATATAAGATG 58.129 37.037 0.00 0.00 0.00 2.90
1686 1999 9.364653 ACTACTACCTCTGTACCCAAATATAAG 57.635 37.037 0.00 0.00 0.00 1.73
1695 2008 8.071177 TCAAAAATACTACTACCTCTGTACCC 57.929 38.462 0.00 0.00 0.00 3.69
1721 2034 0.667184 CGGCAGCCGCAAAATTTCTT 60.667 50.000 23.64 0.00 41.17 2.52
1784 2101 3.251729 ACACAATCGCATGGATTAGCATC 59.748 43.478 8.52 0.00 43.52 3.91
1864 2181 6.183361 TGGGACGAAGGGAATATTTGACATAT 60.183 38.462 0.00 0.00 0.00 1.78
1876 2193 4.076394 CACTTATTTTGGGACGAAGGGAA 58.924 43.478 0.00 0.00 0.00 3.97
1877 2194 3.073356 ACACTTATTTTGGGACGAAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
1878 2195 3.418047 ACACTTATTTTGGGACGAAGGG 58.582 45.455 0.00 0.00 0.00 3.95
1879 2196 4.324267 AGACACTTATTTTGGGACGAAGG 58.676 43.478 0.00 0.00 0.00 3.46
1880 2197 4.994852 TGAGACACTTATTTTGGGACGAAG 59.005 41.667 0.00 0.00 0.00 3.79
1881 2198 4.963373 TGAGACACTTATTTTGGGACGAA 58.037 39.130 0.00 0.00 0.00 3.85
1882 2199 4.610605 TGAGACACTTATTTTGGGACGA 57.389 40.909 0.00 0.00 0.00 4.20
1883 2200 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
1884 2201 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1885 2202 7.654022 AAAAGTTGAGACACTTATTTTGGGA 57.346 32.000 0.00 0.00 35.87 4.37
1886 2203 9.244799 GTAAAAAGTTGAGACACTTATTTTGGG 57.755 33.333 0.00 0.00 35.87 4.12
1893 2210 9.895138 AAGGTTAGTAAAAAGTTGAGACACTTA 57.105 29.630 0.00 0.00 35.87 2.24
1894 2211 8.674607 CAAGGTTAGTAAAAAGTTGAGACACTT 58.325 33.333 0.00 0.00 38.74 3.16
1895 2212 7.201705 GCAAGGTTAGTAAAAAGTTGAGACACT 60.202 37.037 0.00 0.00 0.00 3.55
1896 2213 6.910972 GCAAGGTTAGTAAAAAGTTGAGACAC 59.089 38.462 0.00 0.00 0.00 3.67
1897 2214 6.038936 GGCAAGGTTAGTAAAAAGTTGAGACA 59.961 38.462 0.00 0.00 0.00 3.41
1898 2215 6.038936 TGGCAAGGTTAGTAAAAAGTTGAGAC 59.961 38.462 0.00 0.00 0.00 3.36
1899 2216 6.123651 TGGCAAGGTTAGTAAAAAGTTGAGA 58.876 36.000 0.00 0.00 0.00 3.27
1900 2217 6.262273 TCTGGCAAGGTTAGTAAAAAGTTGAG 59.738 38.462 0.00 0.00 0.00 3.02
1901 2218 6.123651 TCTGGCAAGGTTAGTAAAAAGTTGA 58.876 36.000 0.00 0.00 0.00 3.18
1902 2219 6.385649 TCTGGCAAGGTTAGTAAAAAGTTG 57.614 37.500 0.00 0.00 0.00 3.16
1903 2220 7.597288 ATTCTGGCAAGGTTAGTAAAAAGTT 57.403 32.000 0.00 0.00 0.00 2.66
1904 2221 8.700439 TTATTCTGGCAAGGTTAGTAAAAAGT 57.300 30.769 0.00 0.00 0.00 2.66
1905 2222 8.793592 ACTTATTCTGGCAAGGTTAGTAAAAAG 58.206 33.333 0.00 0.00 0.00 2.27
1906 2223 8.573035 CACTTATTCTGGCAAGGTTAGTAAAAA 58.427 33.333 0.00 0.00 0.00 1.94
1907 2224 7.722285 ACACTTATTCTGGCAAGGTTAGTAAAA 59.278 33.333 0.00 0.00 0.00 1.52
1908 2225 7.228590 ACACTTATTCTGGCAAGGTTAGTAAA 58.771 34.615 0.00 0.00 0.00 2.01
1909 2226 6.775708 ACACTTATTCTGGCAAGGTTAGTAA 58.224 36.000 0.00 0.00 0.00 2.24
1910 2227 6.212791 AGACACTTATTCTGGCAAGGTTAGTA 59.787 38.462 0.00 0.00 0.00 1.82
1911 2228 5.013183 AGACACTTATTCTGGCAAGGTTAGT 59.987 40.000 0.00 0.00 0.00 2.24
1912 2229 5.491982 AGACACTTATTCTGGCAAGGTTAG 58.508 41.667 0.00 0.00 0.00 2.34
1913 2230 5.012664 TGAGACACTTATTCTGGCAAGGTTA 59.987 40.000 0.00 0.00 0.00 2.85
1914 2231 4.202461 TGAGACACTTATTCTGGCAAGGTT 60.202 41.667 0.00 0.00 0.00 3.50
1915 2232 3.327757 TGAGACACTTATTCTGGCAAGGT 59.672 43.478 0.00 0.00 0.00 3.50
1916 2233 3.942829 TGAGACACTTATTCTGGCAAGG 58.057 45.455 0.00 0.00 0.00 3.61
1917 2234 4.999950 AGTTGAGACACTTATTCTGGCAAG 59.000 41.667 0.00 0.00 0.00 4.01
1918 2235 4.973168 AGTTGAGACACTTATTCTGGCAA 58.027 39.130 0.00 0.00 0.00 4.52
1919 2236 4.623932 AGTTGAGACACTTATTCTGGCA 57.376 40.909 0.00 0.00 0.00 4.92
1920 2237 5.239525 ACAAAGTTGAGACACTTATTCTGGC 59.760 40.000 0.00 0.00 35.87 4.85
1921 2238 6.867662 ACAAAGTTGAGACACTTATTCTGG 57.132 37.500 0.00 0.00 35.87 3.86
1922 2239 8.594881 AGTACAAAGTTGAGACACTTATTCTG 57.405 34.615 0.00 0.00 35.87 3.02
1925 2242 9.269453 GGTTAGTACAAAGTTGAGACACTTATT 57.731 33.333 0.00 0.00 35.87 1.40
1926 2243 8.648693 AGGTTAGTACAAAGTTGAGACACTTAT 58.351 33.333 0.00 0.00 35.87 1.73
1927 2244 8.015185 AGGTTAGTACAAAGTTGAGACACTTA 57.985 34.615 0.00 0.00 35.87 2.24
1928 2245 6.885922 AGGTTAGTACAAAGTTGAGACACTT 58.114 36.000 0.00 0.00 38.74 3.16
1929 2246 6.481434 AGGTTAGTACAAAGTTGAGACACT 57.519 37.500 0.00 0.00 0.00 3.55
1930 2247 7.924947 ACTAAGGTTAGTACAAAGTTGAGACAC 59.075 37.037 0.32 0.00 41.92 3.67
1931 2248 8.015185 ACTAAGGTTAGTACAAAGTTGAGACA 57.985 34.615 0.32 0.00 41.92 3.41
1956 2273 8.770828 GTGTCTCAAGCTTAGTACAATTTTGTA 58.229 33.333 0.00 0.00 42.35 2.41
1957 2274 7.499232 AGTGTCTCAAGCTTAGTACAATTTTGT 59.501 33.333 0.00 1.08 44.86 2.83
1958 2275 7.865707 AGTGTCTCAAGCTTAGTACAATTTTG 58.134 34.615 0.00 0.00 0.00 2.44
1959 2276 8.451908 AAGTGTCTCAAGCTTAGTACAATTTT 57.548 30.769 0.00 0.00 0.00 1.82
1960 2277 9.726438 ATAAGTGTCTCAAGCTTAGTACAATTT 57.274 29.630 18.67 13.34 0.00 1.82
1961 2278 9.726438 AATAAGTGTCTCAAGCTTAGTACAATT 57.274 29.630 17.97 17.97 0.00 2.32
1962 2279 9.726438 AAATAAGTGTCTCAAGCTTAGTACAAT 57.274 29.630 0.00 0.00 0.00 2.71
1963 2280 9.555727 AAAATAAGTGTCTCAAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
1964 2281 8.988934 CAAAATAAGTGTCTCAAGCTTAGTACA 58.011 33.333 0.00 0.36 0.00 2.90
1965 2282 8.443937 CCAAAATAAGTGTCTCAAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
1966 2283 7.606456 CCCAAAATAAGTGTCTCAAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
1967 2284 6.431234 CCCAAAATAAGTGTCTCAAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
1968 2285 6.655003 TCCCAAAATAAGTGTCTCAAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
1969 2286 6.539173 TCCCAAAATAAGTGTCTCAAGCTTA 58.461 36.000 0.00 0.00 0.00 3.09
1970 2287 5.385198 TCCCAAAATAAGTGTCTCAAGCTT 58.615 37.500 0.00 0.00 0.00 3.74
1971 2288 4.985538 TCCCAAAATAAGTGTCTCAAGCT 58.014 39.130 0.00 0.00 0.00 3.74
1972 2289 5.393461 CCATCCCAAAATAAGTGTCTCAAGC 60.393 44.000 0.00 0.00 0.00 4.01
1973 2290 5.945784 TCCATCCCAAAATAAGTGTCTCAAG 59.054 40.000 0.00 0.00 0.00 3.02
1974 2291 5.886609 TCCATCCCAAAATAAGTGTCTCAA 58.113 37.500 0.00 0.00 0.00 3.02
1975 2292 5.500234 CTCCATCCCAAAATAAGTGTCTCA 58.500 41.667 0.00 0.00 0.00 3.27
1976 2293 4.884164 CCTCCATCCCAAAATAAGTGTCTC 59.116 45.833 0.00 0.00 0.00 3.36
1977 2294 4.325344 CCCTCCATCCCAAAATAAGTGTCT 60.325 45.833 0.00 0.00 0.00 3.41
1978 2295 3.954258 CCCTCCATCCCAAAATAAGTGTC 59.046 47.826 0.00 0.00 0.00 3.67
1979 2296 3.596046 TCCCTCCATCCCAAAATAAGTGT 59.404 43.478 0.00 0.00 0.00 3.55
1980 2297 4.210331 CTCCCTCCATCCCAAAATAAGTG 58.790 47.826 0.00 0.00 0.00 3.16
1981 2298 3.858638 ACTCCCTCCATCCCAAAATAAGT 59.141 43.478 0.00 0.00 0.00 2.24
1982 2299 4.526438 ACTCCCTCCATCCCAAAATAAG 57.474 45.455 0.00 0.00 0.00 1.73
1983 2300 4.791334 TGTACTCCCTCCATCCCAAAATAA 59.209 41.667 0.00 0.00 0.00 1.40
1984 2301 4.376223 TGTACTCCCTCCATCCCAAAATA 58.624 43.478 0.00 0.00 0.00 1.40
1985 2302 3.197983 TGTACTCCCTCCATCCCAAAAT 58.802 45.455 0.00 0.00 0.00 1.82
1986 2303 2.638325 TGTACTCCCTCCATCCCAAAA 58.362 47.619 0.00 0.00 0.00 2.44
1987 2304 2.352561 TGTACTCCCTCCATCCCAAA 57.647 50.000 0.00 0.00 0.00 3.28
1988 2305 2.126882 CATGTACTCCCTCCATCCCAA 58.873 52.381 0.00 0.00 0.00 4.12
1989 2306 1.806496 CATGTACTCCCTCCATCCCA 58.194 55.000 0.00 0.00 0.00 4.37
1990 2307 0.398318 GCATGTACTCCCTCCATCCC 59.602 60.000 0.00 0.00 0.00 3.85
1991 2308 0.398318 GGCATGTACTCCCTCCATCC 59.602 60.000 0.00 0.00 0.00 3.51
1992 2309 1.071385 CTGGCATGTACTCCCTCCATC 59.929 57.143 0.00 0.00 0.00 3.51
1993 2310 1.135094 CTGGCATGTACTCCCTCCAT 58.865 55.000 0.00 0.00 0.00 3.41
1994 2311 1.626356 GCTGGCATGTACTCCCTCCA 61.626 60.000 0.00 0.00 0.00 3.86
1995 2312 1.147153 GCTGGCATGTACTCCCTCC 59.853 63.158 0.00 0.00 0.00 4.30
1996 2313 0.253044 TTGCTGGCATGTACTCCCTC 59.747 55.000 0.00 0.00 0.00 4.30
1997 2314 0.035056 GTTGCTGGCATGTACTCCCT 60.035 55.000 0.00 0.00 0.00 4.20
1998 2315 0.035056 AGTTGCTGGCATGTACTCCC 60.035 55.000 0.00 0.00 0.00 4.30
1999 2316 1.826385 AAGTTGCTGGCATGTACTCC 58.174 50.000 0.00 0.00 0.00 3.85
2000 2317 3.923017 AAAAGTTGCTGGCATGTACTC 57.077 42.857 0.00 0.00 0.00 2.59
2001 2318 5.982890 AATAAAAGTTGCTGGCATGTACT 57.017 34.783 0.00 0.00 0.00 2.73
2002 2319 9.450807 CTATAAATAAAAGTTGCTGGCATGTAC 57.549 33.333 0.00 0.00 0.00 2.90
2003 2320 8.134895 GCTATAAATAAAAGTTGCTGGCATGTA 58.865 33.333 0.00 0.00 0.00 2.29
2004 2321 6.980397 GCTATAAATAAAAGTTGCTGGCATGT 59.020 34.615 0.00 0.00 0.00 3.21
2005 2322 6.421801 GGCTATAAATAAAAGTTGCTGGCATG 59.578 38.462 0.00 0.00 0.00 4.06
2009 2326 8.345565 CAGTAGGCTATAAATAAAAGTTGCTGG 58.654 37.037 0.00 0.00 0.00 4.85
2027 2344 4.285517 CCATCAATATCCTCACAGTAGGCT 59.714 45.833 0.00 0.00 36.51 4.58
2062 2379 7.944729 ACCTAATATGAATTCAGCAAGTGTT 57.055 32.000 14.54 4.01 0.00 3.32
2096 2418 2.135933 GAACTGTCACCCAAAGAGTCG 58.864 52.381 0.00 0.00 0.00 4.18
2289 2803 8.814038 AATTCACATCTTTTAGGAATGCTAGT 57.186 30.769 0.00 0.00 0.00 2.57
2353 2867 4.430007 CACGTGACTTAGCTATAGGCAAA 58.570 43.478 10.90 0.00 44.79 3.68
2364 2878 4.668576 AATGACAATGCACGTGACTTAG 57.331 40.909 22.23 6.82 0.00 2.18
2367 2881 2.618241 ACAAATGACAATGCACGTGACT 59.382 40.909 22.23 1.38 0.00 3.41
2372 2886 2.287487 TGGTGACAAATGACAATGCACG 60.287 45.455 0.00 0.00 37.44 5.34
2450 2964 8.099537 TGGAAATTAAACAATGTATGCCAATGT 58.900 29.630 0.00 0.00 38.87 2.71
2451 2965 8.489990 TGGAAATTAAACAATGTATGCCAATG 57.510 30.769 0.00 0.00 0.00 2.82
2452 2966 9.683870 AATGGAAATTAAACAATGTATGCCAAT 57.316 25.926 0.00 0.00 0.00 3.16
2506 3020 7.775093 ACAGGATATTCTGATTTCGGAAATTGA 59.225 33.333 18.36 14.30 43.66 2.57
2681 3197 5.105834 CTTTCTGAAGCCTCTTTGTTCTG 57.894 43.478 0.00 0.00 0.00 3.02
2696 3212 3.176924 AGACCTAGACCAGCTTTCTGA 57.823 47.619 5.04 0.00 42.95 3.27
2714 3230 7.710907 CGAGATAACAAACCATCTGGATAAAGA 59.289 37.037 2.55 0.00 38.94 2.52
2732 3248 2.288666 TGATTTGCCAGCCGAGATAAC 58.711 47.619 0.00 0.00 0.00 1.89
2742 3258 2.731572 ACCCATCTCTTGATTTGCCAG 58.268 47.619 0.00 0.00 0.00 4.85
2800 3316 3.319137 TTCCCTGTGAGAGTTCATTCG 57.681 47.619 0.00 0.00 35.39 3.34
2801 3317 4.397417 CCATTTCCCTGTGAGAGTTCATTC 59.603 45.833 0.00 0.00 35.39 2.67
2858 3374 5.584253 TGTCTGACTGCTTCTTATAGTCC 57.416 43.478 9.51 0.00 39.98 3.85
2867 3383 5.703130 AGTAAGGAAATTGTCTGACTGCTTC 59.297 40.000 9.51 8.22 0.00 3.86
2915 3431 8.912988 GGGTAATTAATGTCATTCATTGGAAGA 58.087 33.333 13.10 0.00 45.14 2.87
2951 3467 3.851458 ACTATGCCAGAAGATGCATGA 57.149 42.857 2.46 0.00 46.99 3.07
3131 3647 3.976169 CATTTTAATGGGCCACGGTATG 58.024 45.455 9.28 5.72 32.78 2.39
3196 3712 1.210155 GTTGATGCGGGACACAAGC 59.790 57.895 0.00 0.00 0.00 4.01
3274 3793 7.542130 AGTGTTTTGAGAAGTGAAACAAACATC 59.458 33.333 2.84 0.00 42.74 3.06
3275 3794 7.329226 CAGTGTTTTGAGAAGTGAAACAAACAT 59.671 33.333 2.84 0.00 42.74 2.71
3276 3795 6.640499 CAGTGTTTTGAGAAGTGAAACAAACA 59.360 34.615 2.84 0.00 42.74 2.83
3277 3796 6.861055 TCAGTGTTTTGAGAAGTGAAACAAAC 59.139 34.615 2.84 0.00 42.74 2.93
3281 3800 6.202226 GGATCAGTGTTTTGAGAAGTGAAAC 58.798 40.000 0.00 0.00 34.67 2.78
3306 3825 6.012658 TGTACCTGAACAAAAGCATTCATC 57.987 37.500 0.00 0.00 34.43 2.92
3307 3826 6.392354 CATGTACCTGAACAAAAGCATTCAT 58.608 36.000 0.00 0.00 34.43 2.57
3308 3827 5.278907 CCATGTACCTGAACAAAAGCATTCA 60.279 40.000 0.00 0.00 33.82 2.57
3309 3828 5.048083 TCCATGTACCTGAACAAAAGCATTC 60.048 40.000 0.00 0.00 32.02 2.67
3310 3829 4.832266 TCCATGTACCTGAACAAAAGCATT 59.168 37.500 0.00 0.00 32.02 3.56
3311 3830 4.406456 TCCATGTACCTGAACAAAAGCAT 58.594 39.130 0.00 0.00 32.02 3.79
3312 3831 3.826524 TCCATGTACCTGAACAAAAGCA 58.173 40.909 0.00 0.00 32.02 3.91
3348 3867 5.024785 AGTCAAACTCTCCTTCGAACTTT 57.975 39.130 0.00 0.00 0.00 2.66
3378 3897 9.707957 ATATAAGGGTAAACATGTGAAAATGGA 57.292 29.630 0.00 0.00 31.46 3.41
3385 3904 5.761234 GCGGAATATAAGGGTAAACATGTGA 59.239 40.000 0.00 0.00 0.00 3.58
3388 3907 5.763204 AGTGCGGAATATAAGGGTAAACATG 59.237 40.000 0.00 0.00 0.00 3.21
3392 3911 5.881923 AGAGTGCGGAATATAAGGGTAAA 57.118 39.130 0.00 0.00 0.00 2.01
3398 3917 5.837437 AGACTGAAGAGTGCGGAATATAAG 58.163 41.667 0.00 0.00 30.16 1.73
3401 3920 4.744795 AAGACTGAAGAGTGCGGAATAT 57.255 40.909 0.00 0.00 30.16 1.28
3410 3929 6.876257 GGTATTGTCATCAAAGACTGAAGAGT 59.124 38.462 0.00 0.00 37.67 3.24
3418 3937 5.940470 ACTCAAGGGTATTGTCATCAAAGAC 59.060 40.000 0.00 0.00 37.11 3.01
3453 3972 9.612620 GGTGATTTGTAAGTTCTAAGTTCATTG 57.387 33.333 0.00 0.00 0.00 2.82
3530 4050 4.480541 TGCGAACGTTAACGATAGGTTAA 58.519 39.130 33.06 8.78 46.19 2.01
3539 4059 5.001819 GGAAAATGTTATGCGAACGTTAACG 59.998 40.000 25.68 25.68 46.33 3.18
3540 4060 6.032042 CAGGAAAATGTTATGCGAACGTTAAC 59.968 38.462 0.00 1.98 0.00 2.01
3543 4063 4.214545 TCAGGAAAATGTTATGCGAACGTT 59.785 37.500 0.00 0.00 0.00 3.99
3545 4065 4.335082 TCAGGAAAATGTTATGCGAACG 57.665 40.909 0.00 0.00 0.00 3.95
3627 4472 7.584987 ACAAGTTAAGTTTGATCATACACTGC 58.415 34.615 17.09 6.10 0.00 4.40
3639 4484 6.367422 TCTGCAAAACCAACAAGTTAAGTTTG 59.633 34.615 11.61 10.10 32.24 2.93
3710 4558 8.507249 GGATCTGACGAAAAATATTTATCCTGG 58.493 37.037 12.25 0.00 29.40 4.45
3713 4561 9.884465 CAAGGATCTGACGAAAAATATTTATCC 57.116 33.333 11.83 11.83 30.97 2.59
3727 4575 0.036952 AGTGGCACAAGGATCTGACG 60.037 55.000 21.41 0.00 44.16 4.35
3728 4576 1.002430 TCAGTGGCACAAGGATCTGAC 59.998 52.381 21.41 0.00 44.16 3.51
3746 4594 2.279741 GTTGCTTCCGCTGATACATCA 58.720 47.619 0.00 0.00 36.97 3.07
3758 4606 7.662604 ATCTTCATTCAAAAATGTTGCTTCC 57.337 32.000 0.00 0.00 42.46 3.46
3808 4656 0.878416 TGCATTAAGTGGACCGTTGC 59.122 50.000 0.00 0.00 0.00 4.17
3848 4696 3.181498 TGGCTGATAATGCAACGTCATTG 60.181 43.478 11.59 0.00 41.69 2.82
3854 4702 0.664761 CCCTGGCTGATAATGCAACG 59.335 55.000 0.00 0.00 0.00 4.10
3858 4706 2.574006 TCATCCCTGGCTGATAATGC 57.426 50.000 0.00 0.00 0.00 3.56
3887 4735 4.657013 TGTGTATGCCATTACTGGAAACA 58.343 39.130 2.72 0.85 46.37 2.83
3888 4736 4.700213 ACTGTGTATGCCATTACTGGAAAC 59.300 41.667 2.72 0.00 46.37 2.78
3903 4757 4.039245 AGACAAGTGCTGTGTACTGTGTAT 59.961 41.667 0.00 0.00 38.84 2.29
3907 4761 2.483714 CCAGACAAGTGCTGTGTACTGT 60.484 50.000 0.00 0.00 38.84 3.55
3910 4764 2.526304 TCCAGACAAGTGCTGTGTAC 57.474 50.000 0.00 0.00 38.84 2.90
3917 4771 4.154195 ACGTTTCAATATCCAGACAAGTGC 59.846 41.667 0.00 0.00 0.00 4.40
3924 4778 8.610248 TTTGTTCTTACGTTTCAATATCCAGA 57.390 30.769 0.00 0.00 0.00 3.86
3934 4788 9.113876 CCACTATGAATTTTGTTCTTACGTTTC 57.886 33.333 0.00 0.00 0.00 2.78
3936 4790 7.040686 AGCCACTATGAATTTTGTTCTTACGTT 60.041 33.333 0.00 0.00 0.00 3.99
3938 4792 6.842163 AGCCACTATGAATTTTGTTCTTACG 58.158 36.000 0.00 0.00 0.00 3.18
4002 4856 5.937165 TCGTTGTCCTAAAATAACGATCG 57.063 39.130 14.88 14.88 46.59 3.69
4007 4861 8.508875 TCTTTTCCATCGTTGTCCTAAAATAAC 58.491 33.333 0.00 0.00 0.00 1.89
4010 4864 7.703058 ATCTTTTCCATCGTTGTCCTAAAAT 57.297 32.000 0.00 0.00 0.00 1.82
4019 4875 8.717821 TGTAGAGTTTAATCTTTTCCATCGTTG 58.282 33.333 0.00 0.00 0.00 4.10
4020 4876 8.842358 TGTAGAGTTTAATCTTTTCCATCGTT 57.158 30.769 0.00 0.00 0.00 3.85
4032 4888 9.155975 AGATGTGTGATGTTGTAGAGTTTAATC 57.844 33.333 0.00 0.00 0.00 1.75
4049 4905 2.612721 CGTCATTGTCCCAGATGTGTGA 60.613 50.000 0.00 0.00 0.00 3.58
4050 4906 1.733912 CGTCATTGTCCCAGATGTGTG 59.266 52.381 0.00 0.00 0.00 3.82
4051 4907 1.623311 TCGTCATTGTCCCAGATGTGT 59.377 47.619 0.00 0.00 0.00 3.72
4052 4908 2.002586 GTCGTCATTGTCCCAGATGTG 58.997 52.381 0.00 0.00 0.00 3.21
4083 4953 5.423610 AGGAGACTATGACTGCATAAACTGT 59.576 40.000 0.00 0.00 40.61 3.55
4117 4987 7.707624 ATGCTTCAGAAATAATGGTTCTTGA 57.292 32.000 0.00 0.00 32.96 3.02
4308 5180 5.592054 TGATAATACAGTTCAGAGGCGAAG 58.408 41.667 0.00 0.00 0.00 3.79
4310 5182 5.592104 TTGATAATACAGTTCAGAGGCGA 57.408 39.130 0.00 0.00 0.00 5.54
4312 5184 9.494271 TGATATTTGATAATACAGTTCAGAGGC 57.506 33.333 0.00 0.00 0.00 4.70
4362 5234 6.335777 ACATAGCAAAGAGAAATTTCATGGC 58.664 36.000 19.99 13.79 0.00 4.40
4383 5255 5.460646 GTGATCGTTCCAATGACAAAACAT 58.539 37.500 0.00 0.00 0.00 2.71
4401 5273 2.096496 CCACAAATCTTGGCTCGTGATC 59.904 50.000 0.00 0.00 34.12 2.92
4407 5279 4.380867 CCATACAACCACAAATCTTGGCTC 60.381 45.833 0.00 0.00 37.69 4.70
4546 5429 8.942338 TGTGACCTTGAACATACAGTATTATC 57.058 34.615 0.00 0.00 0.00 1.75
4577 5460 3.871006 TGTATATTTGGCGAGCTCAGTTG 59.129 43.478 15.40 0.00 0.00 3.16
4580 5463 3.722147 AGTGTATATTTGGCGAGCTCAG 58.278 45.455 15.40 7.85 0.00 3.35
4621 5504 8.699130 TGAGATTATAGATTGTCAAGAGCTCAA 58.301 33.333 17.77 1.31 0.00 3.02
4888 5788 6.916360 TCTCCACCTTTGATATTTTTGCTT 57.084 33.333 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.