Multiple sequence alignment - TraesCS7B01G278000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G278000 chr7B 100.000 8030 0 0 1 8030 508821153 508829182 0.000000e+00 14829.0
1 TraesCS7B01G278000 chr7D 96.130 3411 70 20 4630 8030 483278815 483282173 0.000000e+00 5511.0
2 TraesCS7B01G278000 chr7D 92.976 1979 70 24 665 2589 483274485 483276448 0.000000e+00 2820.0
3 TraesCS7B01G278000 chr7D 95.399 978 35 3 3658 4634 483277666 483278634 0.000000e+00 1548.0
4 TraesCS7B01G278000 chr7D 97.929 821 15 1 2845 3663 483276444 483277264 0.000000e+00 1421.0
5 TraesCS7B01G278000 chr7D 86.022 651 84 7 1 646 475139081 475138433 0.000000e+00 691.0
6 TraesCS7B01G278000 chr7D 91.026 156 11 2 3295 3449 436961795 436961948 2.940000e-49 207.0
7 TraesCS7B01G278000 chr7D 90.132 152 15 0 4172 4323 483278322 483278473 1.770000e-46 198.0
8 TraesCS7B01G278000 chr7D 87.791 172 14 5 3279 3449 404056800 404056965 2.290000e-45 195.0
9 TraesCS7B01G278000 chr7D 89.333 75 7 1 520 594 45182314 45182387 8.580000e-15 93.5
10 TraesCS7B01G278000 chr7A 96.680 2500 54 11 5493 7982 549717683 549720163 0.000000e+00 4130.0
11 TraesCS7B01G278000 chr7A 95.856 2027 76 6 3429 5452 549715522 549717543 0.000000e+00 3271.0
12 TraesCS7B01G278000 chr7A 93.021 1791 83 24 825 2589 549712872 549714646 0.000000e+00 2577.0
13 TraesCS7B01G278000 chr7A 95.719 584 11 7 2845 3427 549714642 549715212 0.000000e+00 928.0
14 TraesCS7B01G278000 chr7A 88.953 172 13 4 3279 3449 462978573 462978739 2.940000e-49 207.0
15 TraesCS7B01G278000 chr2B 96.450 676 22 2 1 675 65070634 65069960 0.000000e+00 1114.0
16 TraesCS7B01G278000 chr2B 92.565 269 19 1 2588 2856 120234317 120234050 1.260000e-102 385.0
17 TraesCS7B01G278000 chr2B 91.367 278 23 1 2574 2851 136438273 136438549 5.880000e-101 379.0
18 TraesCS7B01G278000 chr2B 87.719 171 14 6 3290 3456 141562163 141562330 8.220000e-45 193.0
19 TraesCS7B01G278000 chr4B 96.119 670 24 2 1 668 574056950 574057619 0.000000e+00 1092.0
20 TraesCS7B01G278000 chr4B 90.942 276 21 3 2577 2852 280930930 280930659 1.270000e-97 368.0
21 TraesCS7B01G278000 chr4B 95.833 168 5 2 514 679 99042199 99042366 3.690000e-68 270.0
22 TraesCS7B01G278000 chr4B 92.353 170 9 2 514 679 99050359 99050528 1.040000e-58 239.0
23 TraesCS7B01G278000 chr5D 95.846 674 24 3 1 670 517673123 517672450 0.000000e+00 1086.0
24 TraesCS7B01G278000 chr5D 93.611 360 20 1 315 671 495465152 495464793 1.190000e-147 534.0
25 TraesCS7B01G278000 chr5D 92.776 263 18 1 2587 2849 517961356 517961095 5.880000e-101 379.0
26 TraesCS7B01G278000 chr5D 86.416 346 37 8 317 659 383227052 383226714 3.540000e-98 370.0
27 TraesCS7B01G278000 chr5D 90.323 155 13 1 3295 3449 256749799 256749951 1.370000e-47 202.0
28 TraesCS7B01G278000 chr6A 95.082 671 31 2 1 670 98972896 98973565 0.000000e+00 1055.0
29 TraesCS7B01G278000 chr6A 94.222 675 37 2 1 674 480627869 480628542 0.000000e+00 1029.0
30 TraesCS7B01G278000 chr2A 94.799 673 32 3 1 670 45049912 45049240 0.000000e+00 1046.0
31 TraesCS7B01G278000 chr5B 95.404 631 27 2 42 670 13524198 13524828 0.000000e+00 1003.0
32 TraesCS7B01G278000 chr5A 93.563 668 40 3 5 670 584602078 584601412 0.000000e+00 992.0
33 TraesCS7B01G278000 chr5A 94.737 38 2 0 7968 8005 519856224 519856261 8.700000e-05 60.2
34 TraesCS7B01G278000 chr1B 95.038 524 26 0 137 660 74026878 74027401 0.000000e+00 824.0
35 TraesCS7B01G278000 chr1B 94.699 415 21 1 261 675 684111963 684111550 1.890000e-180 643.0
36 TraesCS7B01G278000 chr2D 95.402 435 17 2 243 675 608522940 608522507 0.000000e+00 689.0
37 TraesCS7B01G278000 chr2D 88.664 247 20 6 430 670 91198842 91199086 2.190000e-75 294.0
38 TraesCS7B01G278000 chr2D 89.091 165 13 4 3294 3456 88290054 88290215 4.910000e-47 200.0
39 TraesCS7B01G278000 chr4D 93.130 262 17 1 2588 2849 395403417 395403157 4.550000e-102 383.0
40 TraesCS7B01G278000 chr4D 88.194 144 13 3 488 628 108224932 108225074 1.390000e-37 169.0
41 TraesCS7B01G278000 chr3B 93.130 262 17 1 2588 2849 480376942 480377202 4.550000e-102 383.0
42 TraesCS7B01G278000 chr3B 91.209 273 23 1 2577 2849 653096149 653096420 3.540000e-98 370.0
43 TraesCS7B01G278000 chr6D 91.166 283 20 5 2571 2849 108674189 108673908 5.880000e-101 379.0
44 TraesCS7B01G278000 chr6D 91.971 274 14 3 2576 2849 107930424 107930159 2.120000e-100 377.0
45 TraesCS7B01G278000 chr6B 88.750 160 15 2 3295 3454 537553993 537553837 8.220000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G278000 chr7B 508821153 508829182 8029 False 14829.0 14829 100.0000 1 8030 1 chr7B.!!$F1 8029
1 TraesCS7B01G278000 chr7D 483274485 483282173 7688 False 2299.6 5511 94.5132 665 8030 5 chr7D.!!$F4 7365
2 TraesCS7B01G278000 chr7D 475138433 475139081 648 True 691.0 691 86.0220 1 646 1 chr7D.!!$R1 645
3 TraesCS7B01G278000 chr7A 549712872 549720163 7291 False 2726.5 4130 95.3190 825 7982 4 chr7A.!!$F2 7157
4 TraesCS7B01G278000 chr2B 65069960 65070634 674 True 1114.0 1114 96.4500 1 675 1 chr2B.!!$R1 674
5 TraesCS7B01G278000 chr4B 574056950 574057619 669 False 1092.0 1092 96.1190 1 668 1 chr4B.!!$F3 667
6 TraesCS7B01G278000 chr5D 517672450 517673123 673 True 1086.0 1086 95.8460 1 670 1 chr5D.!!$R3 669
7 TraesCS7B01G278000 chr6A 98972896 98973565 669 False 1055.0 1055 95.0820 1 670 1 chr6A.!!$F1 669
8 TraesCS7B01G278000 chr6A 480627869 480628542 673 False 1029.0 1029 94.2220 1 674 1 chr6A.!!$F2 673
9 TraesCS7B01G278000 chr2A 45049240 45049912 672 True 1046.0 1046 94.7990 1 670 1 chr2A.!!$R1 669
10 TraesCS7B01G278000 chr5B 13524198 13524828 630 False 1003.0 1003 95.4040 42 670 1 chr5B.!!$F1 628
11 TraesCS7B01G278000 chr5A 584601412 584602078 666 True 992.0 992 93.5630 5 670 1 chr5A.!!$R1 665
12 TraesCS7B01G278000 chr1B 74026878 74027401 523 False 824.0 824 95.0380 137 660 1 chr1B.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 832 0.038166 GACATGGGGAAAGGTCAGCA 59.962 55.000 0.00 0.00 0.00 4.41 F
1868 1933 0.033011 ATGGTGAGTCTCGGTAGGCT 60.033 55.000 0.00 0.00 41.57 4.58 F
2638 2712 0.030235 GGTTTCCGTGCAAGTCAACC 59.970 55.000 12.37 12.37 0.00 3.77 F
2797 2871 0.179094 TCGGTCAAACTTGCACTCGT 60.179 50.000 0.00 0.00 0.00 4.18 F
2798 2872 0.655733 CGGTCAAACTTGCACTCGTT 59.344 50.000 0.00 0.00 0.00 3.85 F
4492 5290 0.882042 GTATGTGGCTGGAGCATCGG 60.882 60.000 0.20 0.00 44.36 4.18 F
4880 5863 1.142465 CTACCTCCTGGAGCATGCAAT 59.858 52.381 21.98 0.00 34.45 3.56 F
5664 6748 1.308998 AAAAAGTGTGGGCTCTGTCG 58.691 50.000 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2619 2693 0.030235 GGTTGACTTGCACGGAAACC 59.970 55.000 11.74 11.74 0.00 3.27 R
2778 2852 0.179094 ACGAGTGCAAGTTTGACCGA 60.179 50.000 0.00 0.00 0.00 4.69 R
4473 5271 0.882042 CCGATGCTCCAGCCACATAC 60.882 60.000 0.00 0.00 41.18 2.39 R
4674 5657 0.046242 TTGGATCAGGGGGAGTGGAT 59.954 55.000 0.00 0.00 0.00 3.41 R
4950 5933 4.939439 ACCAATACAAGGATACGTTTGACC 59.061 41.667 4.77 0.00 46.39 4.02 R
5808 6893 0.095935 CAAATCGTGCAAGCTCCTCG 59.904 55.000 0.00 0.00 0.00 4.63 R
6285 7370 1.282875 GCGTTCAGAAGCACCAACC 59.717 57.895 0.00 0.00 0.00 3.77 R
7819 8922 2.284112 ACCGGGCGAGGTAAGGAA 60.284 61.111 6.32 0.00 43.89 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 196 2.369394 GGGTTGGGTCAAGCTCAATAG 58.631 52.381 9.25 0.00 40.13 1.73
222 227 1.216710 GACAGAGGAAGGTGGAGCG 59.783 63.158 0.00 0.00 0.00 5.03
223 228 1.534235 ACAGAGGAAGGTGGAGCGT 60.534 57.895 0.00 0.00 0.00 5.07
253 258 3.394674 TGGTTCTGCGTGATTGTCTTA 57.605 42.857 0.00 0.00 0.00 2.10
428 434 2.696707 TGGTTAAAGACAGAGACACGGT 59.303 45.455 0.00 0.00 0.00 4.83
493 499 4.525487 TGATGTCCCTTCGTACAACTAGTT 59.475 41.667 1.12 1.12 0.00 2.24
662 669 8.963725 TCCTTGATTAATACAAGTCTTACTCGA 58.036 33.333 18.28 0.00 41.88 4.04
741 750 0.319813 GGTGCCTTCGCTTTGCATTT 60.320 50.000 0.00 0.00 37.34 2.32
814 824 1.200519 CGTAGGAGGACATGGGGAAA 58.799 55.000 0.00 0.00 0.00 3.13
815 825 1.139058 CGTAGGAGGACATGGGGAAAG 59.861 57.143 0.00 0.00 0.00 2.62
816 826 1.490910 GTAGGAGGACATGGGGAAAGG 59.509 57.143 0.00 0.00 0.00 3.11
817 827 0.178831 AGGAGGACATGGGGAAAGGT 60.179 55.000 0.00 0.00 0.00 3.50
818 828 0.256177 GGAGGACATGGGGAAAGGTC 59.744 60.000 0.00 0.00 0.00 3.85
819 829 0.991920 GAGGACATGGGGAAAGGTCA 59.008 55.000 0.00 0.00 32.00 4.02
820 830 0.995024 AGGACATGGGGAAAGGTCAG 59.005 55.000 0.00 0.00 32.00 3.51
822 832 0.038166 GACATGGGGAAAGGTCAGCA 59.962 55.000 0.00 0.00 0.00 4.41
823 833 0.251341 ACATGGGGAAAGGTCAGCAC 60.251 55.000 0.00 0.00 0.00 4.40
824 834 1.002134 ATGGGGAAAGGTCAGCACG 60.002 57.895 0.00 0.00 0.00 5.34
825 835 2.359975 GGGGAAAGGTCAGCACGG 60.360 66.667 0.00 0.00 0.00 4.94
826 836 2.359975 GGGAAAGGTCAGCACGGG 60.360 66.667 0.00 0.00 0.00 5.28
827 837 2.430367 GGAAAGGTCAGCACGGGT 59.570 61.111 0.00 0.00 0.00 5.28
830 840 1.003718 AAAGGTCAGCACGGGTAGC 60.004 57.895 0.00 0.00 0.00 3.58
833 868 3.702048 GTCAGCACGGGTAGCCCA 61.702 66.667 5.12 0.00 45.83 5.36
917 953 0.386113 CTCTCCCTTCGATTCCGACC 59.614 60.000 0.00 0.00 45.50 4.79
1377 1428 0.833287 ACTTCAGGCGCTACATGGAT 59.167 50.000 7.64 0.00 0.00 3.41
1501 1559 0.912486 GTTGTAGCCTCACCCCTCAT 59.088 55.000 0.00 0.00 0.00 2.90
1525 1583 1.002257 TCTGTACCGCTACCGACCA 60.002 57.895 0.00 0.00 36.29 4.02
1536 1594 0.173935 TACCGACCACCGCAATACAG 59.826 55.000 0.00 0.00 36.84 2.74
1541 1599 1.447838 CCACCGCAATACAGTCGCT 60.448 57.895 0.00 0.00 0.00 4.93
1545 1603 1.141881 CGCAATACAGTCGCTCCCT 59.858 57.895 0.00 0.00 0.00 4.20
1546 1604 0.384309 CGCAATACAGTCGCTCCCTA 59.616 55.000 0.00 0.00 0.00 3.53
1547 1605 1.854227 GCAATACAGTCGCTCCCTAC 58.146 55.000 0.00 0.00 0.00 3.18
1548 1606 1.409427 GCAATACAGTCGCTCCCTACT 59.591 52.381 0.00 0.00 0.00 2.57
1554 1613 3.449227 TCGCTCCCTACTGTGCGG 61.449 66.667 9.15 1.01 45.39 5.69
1556 1615 2.663196 GCTCCCTACTGTGCGGTT 59.337 61.111 0.00 0.00 0.00 4.44
1568 1627 1.216122 GTGCGGTTACACGTTGGTTA 58.784 50.000 0.00 0.00 35.98 2.85
1637 1696 5.730550 AGTTTCCGTAGCATATTTCTGACA 58.269 37.500 0.00 0.00 0.00 3.58
1698 1760 1.269051 CGTTGGAGTGTTGCCCTTTTC 60.269 52.381 0.00 0.00 0.00 2.29
1712 1775 3.622704 GCCCTTTTCTCTTCTTAGGGGTC 60.623 52.174 7.54 0.00 44.71 4.46
1715 1778 4.287326 CCTTTTCTCTTCTTAGGGGTCTGT 59.713 45.833 0.00 0.00 0.00 3.41
1723 1786 3.791320 TCTTAGGGGTCTGTTCTGTGAT 58.209 45.455 0.00 0.00 0.00 3.06
1743 1806 6.703165 TGTGATCAGATGTATATCACTGTTGC 59.297 38.462 13.89 0.00 46.22 4.17
1761 1824 6.271857 ACTGTTGCCATATCTGGAGATTAGAT 59.728 38.462 0.32 0.00 46.37 1.98
1787 1852 6.701841 GTGTCCTTTGCGATTGAATAGATAGA 59.298 38.462 0.00 0.00 0.00 1.98
1796 1861 8.797438 TGCGATTGAATAGATAGAAGATACTGT 58.203 33.333 0.00 0.00 0.00 3.55
1842 1907 7.148641 ACTTCTAGTGAGTGTATGTCTGTTTG 58.851 38.462 1.58 0.00 0.00 2.93
1843 1908 6.025749 TCTAGTGAGTGTATGTCTGTTTGG 57.974 41.667 0.00 0.00 0.00 3.28
1868 1933 0.033011 ATGGTGAGTCTCGGTAGGCT 60.033 55.000 0.00 0.00 41.57 4.58
1884 1949 1.751563 GCTCTGAGGGCCATCTACC 59.248 63.158 19.75 0.59 0.00 3.18
1885 1950 0.762461 GCTCTGAGGGCCATCTACCT 60.762 60.000 19.75 0.00 40.54 3.08
1911 1976 3.583086 ACTGGCCTTATTGTAGTGTCTGT 59.417 43.478 3.32 0.00 0.00 3.41
1923 1990 0.104855 GTGTCTGTGCAGTGGAGACA 59.895 55.000 11.77 11.77 42.96 3.41
1972 2039 5.414144 TGTTTGGCAAAATACGAGATGATCA 59.586 36.000 15.29 0.00 0.00 2.92
1975 2042 4.035558 TGGCAAAATACGAGATGATCAAGC 59.964 41.667 0.00 0.00 0.00 4.01
2157 2228 0.165511 GACGAAAAGCAGCTGAGCAG 59.834 55.000 20.43 0.00 36.85 4.24
2171 2242 3.795826 GCTGAGCAGTAGTACCATAACCG 60.796 52.174 0.00 0.00 0.00 4.44
2175 2246 3.958798 AGCAGTAGTACCATAACCGTCAT 59.041 43.478 0.00 0.00 0.00 3.06
2177 2248 4.441079 GCAGTAGTACCATAACCGTCATGT 60.441 45.833 0.00 0.00 0.00 3.21
2192 2264 5.146460 CCGTCATGTTAAGTGTTCATGTTG 58.854 41.667 0.00 0.00 39.61 3.33
2356 2430 3.005791 GCTACAACAAAACTGGCCAGAAT 59.994 43.478 39.19 23.55 0.00 2.40
2386 2460 1.568597 CCAGTTGGGGTATTGGATCCA 59.431 52.381 11.44 11.44 32.34 3.41
2587 2661 6.767902 ACGGCAACACATTTCATCTATAGATT 59.232 34.615 12.75 0.00 31.21 2.40
2588 2662 7.931407 ACGGCAACACATTTCATCTATAGATTA 59.069 33.333 12.75 2.31 31.21 1.75
2589 2663 8.223769 CGGCAACACATTTCATCTATAGATTAC 58.776 37.037 12.75 0.00 31.21 1.89
2590 2664 9.277783 GGCAACACATTTCATCTATAGATTACT 57.722 33.333 12.75 0.00 31.21 2.24
2594 2668 9.386122 ACACATTTCATCTATAGATTACTCCCT 57.614 33.333 12.75 0.00 31.21 4.20
2595 2669 9.868277 CACATTTCATCTATAGATTACTCCCTC 57.132 37.037 12.75 0.00 31.21 4.30
2596 2670 9.041354 ACATTTCATCTATAGATTACTCCCTCC 57.959 37.037 12.75 0.00 31.21 4.30
2597 2671 7.704578 TTTCATCTATAGATTACTCCCTCCG 57.295 40.000 12.75 0.00 31.21 4.63
2598 2672 6.390048 TCATCTATAGATTACTCCCTCCGT 57.610 41.667 12.75 0.00 31.21 4.69
2599 2673 6.791371 TCATCTATAGATTACTCCCTCCGTT 58.209 40.000 12.75 0.00 31.21 4.44
2600 2674 6.885376 TCATCTATAGATTACTCCCTCCGTTC 59.115 42.308 12.75 0.00 31.21 3.95
2601 2675 5.568392 TCTATAGATTACTCCCTCCGTTCC 58.432 45.833 0.00 0.00 0.00 3.62
2602 2676 2.544844 AGATTACTCCCTCCGTTCCA 57.455 50.000 0.00 0.00 0.00 3.53
2603 2677 2.829023 AGATTACTCCCTCCGTTCCAA 58.171 47.619 0.00 0.00 0.00 3.53
2604 2678 3.178865 AGATTACTCCCTCCGTTCCAAA 58.821 45.455 0.00 0.00 0.00 3.28
2605 2679 3.585732 AGATTACTCCCTCCGTTCCAAAA 59.414 43.478 0.00 0.00 0.00 2.44
2606 2680 4.227527 AGATTACTCCCTCCGTTCCAAAAT 59.772 41.667 0.00 0.00 0.00 1.82
2607 2681 5.427481 AGATTACTCCCTCCGTTCCAAAATA 59.573 40.000 0.00 0.00 0.00 1.40
2608 2682 5.703730 TTACTCCCTCCGTTCCAAAATAT 57.296 39.130 0.00 0.00 0.00 1.28
2609 2683 6.811634 TTACTCCCTCCGTTCCAAAATATA 57.188 37.500 0.00 0.00 0.00 0.86
2610 2684 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
2611 2685 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
2612 2686 5.043737 TCCCTCCGTTCCAAAATATAAGG 57.956 43.478 0.00 0.00 0.00 2.69
2613 2687 4.475747 TCCCTCCGTTCCAAAATATAAGGT 59.524 41.667 0.00 0.00 0.00 3.50
2614 2688 4.578928 CCCTCCGTTCCAAAATATAAGGTG 59.421 45.833 0.00 0.00 0.00 4.00
2615 2689 5.190677 CCTCCGTTCCAAAATATAAGGTGT 58.809 41.667 0.00 0.00 0.00 4.16
2616 2690 6.350906 CCTCCGTTCCAAAATATAAGGTGTA 58.649 40.000 0.00 0.00 0.00 2.90
2617 2691 6.996282 CCTCCGTTCCAAAATATAAGGTGTAT 59.004 38.462 0.00 0.00 0.00 2.29
2618 2692 7.501225 CCTCCGTTCCAAAATATAAGGTGTATT 59.499 37.037 0.00 0.00 0.00 1.89
2619 2693 8.215926 TCCGTTCCAAAATATAAGGTGTATTG 57.784 34.615 0.00 0.00 0.00 1.90
2620 2694 7.283580 TCCGTTCCAAAATATAAGGTGTATTGG 59.716 37.037 0.00 0.00 37.71 3.16
2621 2695 7.067737 CCGTTCCAAAATATAAGGTGTATTGGT 59.932 37.037 0.00 0.00 37.63 3.67
2622 2696 8.463607 CGTTCCAAAATATAAGGTGTATTGGTT 58.536 33.333 0.00 0.00 37.63 3.67
2625 2699 8.973182 TCCAAAATATAAGGTGTATTGGTTTCC 58.027 33.333 0.00 0.00 37.63 3.13
2626 2700 7.918562 CCAAAATATAAGGTGTATTGGTTTCCG 59.081 37.037 0.00 0.00 33.00 4.30
2627 2701 8.463607 CAAAATATAAGGTGTATTGGTTTCCGT 58.536 33.333 0.00 0.00 0.00 4.69
2628 2702 7.562454 AATATAAGGTGTATTGGTTTCCGTG 57.438 36.000 0.00 0.00 0.00 4.94
2629 2703 1.530323 AGGTGTATTGGTTTCCGTGC 58.470 50.000 0.00 0.00 0.00 5.34
2630 2704 1.202830 AGGTGTATTGGTTTCCGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
2631 2705 1.609555 GGTGTATTGGTTTCCGTGCAA 59.390 47.619 0.00 0.00 0.00 4.08
2632 2706 2.351350 GGTGTATTGGTTTCCGTGCAAG 60.351 50.000 0.00 0.00 0.00 4.01
2633 2707 2.292292 GTGTATTGGTTTCCGTGCAAGT 59.708 45.455 0.00 0.00 0.00 3.16
2634 2708 2.550606 TGTATTGGTTTCCGTGCAAGTC 59.449 45.455 0.00 0.00 0.00 3.01
2635 2709 1.686355 ATTGGTTTCCGTGCAAGTCA 58.314 45.000 0.00 0.00 0.00 3.41
2636 2710 1.464734 TTGGTTTCCGTGCAAGTCAA 58.535 45.000 0.00 0.00 0.00 3.18
2637 2711 0.736053 TGGTTTCCGTGCAAGTCAAC 59.264 50.000 0.00 1.08 0.00 3.18
2638 2712 0.030235 GGTTTCCGTGCAAGTCAACC 59.970 55.000 12.37 12.37 0.00 3.77
2639 2713 0.736053 GTTTCCGTGCAAGTCAACCA 59.264 50.000 0.00 0.00 0.00 3.67
2640 2714 1.336755 GTTTCCGTGCAAGTCAACCAT 59.663 47.619 0.00 0.00 0.00 3.55
2641 2715 1.686355 TTCCGTGCAAGTCAACCATT 58.314 45.000 0.00 0.00 0.00 3.16
2642 2716 1.686355 TCCGTGCAAGTCAACCATTT 58.314 45.000 0.00 0.00 0.00 2.32
2643 2717 1.336440 TCCGTGCAAGTCAACCATTTG 59.664 47.619 0.00 0.00 0.00 2.32
2644 2718 1.336440 CCGTGCAAGTCAACCATTTGA 59.664 47.619 0.00 0.00 39.55 2.69
2645 2719 2.223688 CCGTGCAAGTCAACCATTTGAA 60.224 45.455 0.00 0.00 43.52 2.69
2646 2720 3.552684 CCGTGCAAGTCAACCATTTGAAT 60.553 43.478 0.00 0.00 43.52 2.57
2647 2721 3.426191 CGTGCAAGTCAACCATTTGAATG 59.574 43.478 0.00 0.00 43.52 2.67
2648 2722 4.370917 GTGCAAGTCAACCATTTGAATGT 58.629 39.130 0.00 0.00 43.52 2.71
2649 2723 4.810491 GTGCAAGTCAACCATTTGAATGTT 59.190 37.500 0.00 0.00 43.52 2.71
2650 2724 5.294060 GTGCAAGTCAACCATTTGAATGTTT 59.706 36.000 0.00 0.00 43.52 2.83
2651 2725 5.293814 TGCAAGTCAACCATTTGAATGTTTG 59.706 36.000 7.44 7.44 43.52 2.93
2652 2726 5.523188 GCAAGTCAACCATTTGAATGTTTGA 59.477 36.000 11.22 11.22 42.89 2.69
2655 2729 5.604758 TCAACCATTTGAATGTTTGACCA 57.395 34.783 11.22 0.00 41.11 4.02
2656 2730 5.982356 TCAACCATTTGAATGTTTGACCAA 58.018 33.333 11.22 0.00 41.11 3.67
2657 2731 6.047870 TCAACCATTTGAATGTTTGACCAAG 58.952 36.000 11.22 0.00 41.11 3.61
2658 2732 5.867903 ACCATTTGAATGTTTGACCAAGA 57.132 34.783 3.30 0.00 34.60 3.02
2659 2733 6.423776 ACCATTTGAATGTTTGACCAAGAT 57.576 33.333 3.30 0.00 34.60 2.40
2660 2734 6.829849 ACCATTTGAATGTTTGACCAAGATT 58.170 32.000 3.30 0.00 34.60 2.40
2661 2735 7.961351 ACCATTTGAATGTTTGACCAAGATTA 58.039 30.769 3.30 0.00 34.60 1.75
2662 2736 8.596293 ACCATTTGAATGTTTGACCAAGATTAT 58.404 29.630 3.30 0.00 34.60 1.28
2699 2773 9.845740 AACAACATATGCAATACCTAATAGACA 57.154 29.630 1.58 0.00 0.00 3.41
2700 2774 9.845740 ACAACATATGCAATACCTAATAGACAA 57.154 29.630 1.58 0.00 0.00 3.18
2726 2800 9.699410 AAATATGGAACTACTTTTCATGATGGA 57.301 29.630 0.00 0.00 0.00 3.41
2727 2801 9.872684 AATATGGAACTACTTTTCATGATGGAT 57.127 29.630 0.00 0.00 0.00 3.41
2728 2802 7.814264 ATGGAACTACTTTTCATGATGGATC 57.186 36.000 0.00 0.00 0.00 3.36
2729 2803 6.720309 TGGAACTACTTTTCATGATGGATCA 58.280 36.000 0.00 0.00 41.70 2.92
2730 2804 7.174413 TGGAACTACTTTTCATGATGGATCAA 58.826 34.615 0.00 0.00 40.69 2.57
2731 2805 7.669304 TGGAACTACTTTTCATGATGGATCAAA 59.331 33.333 0.00 0.00 40.69 2.69
2732 2806 8.689972 GGAACTACTTTTCATGATGGATCAAAT 58.310 33.333 0.00 0.00 40.69 2.32
2733 2807 9.512435 GAACTACTTTTCATGATGGATCAAATG 57.488 33.333 0.00 0.00 40.69 2.32
2734 2808 8.812513 ACTACTTTTCATGATGGATCAAATGA 57.187 30.769 0.00 0.00 40.69 2.57
2735 2809 9.417561 ACTACTTTTCATGATGGATCAAATGAT 57.582 29.630 0.00 0.00 40.69 2.45
2790 2864 8.455598 TTTTTCTAAAAACTCGGTCAAACTTG 57.544 30.769 0.00 0.00 33.29 3.16
2791 2865 5.164606 TCTAAAAACTCGGTCAAACTTGC 57.835 39.130 0.00 0.00 0.00 4.01
2792 2866 3.859411 AAAAACTCGGTCAAACTTGCA 57.141 38.095 0.00 0.00 0.00 4.08
2793 2867 2.844122 AAACTCGGTCAAACTTGCAC 57.156 45.000 0.00 0.00 0.00 4.57
2794 2868 2.038387 AACTCGGTCAAACTTGCACT 57.962 45.000 0.00 0.00 0.00 4.40
2795 2869 1.583054 ACTCGGTCAAACTTGCACTC 58.417 50.000 0.00 0.00 0.00 3.51
2796 2870 0.508641 CTCGGTCAAACTTGCACTCG 59.491 55.000 0.00 0.00 0.00 4.18
2797 2871 0.179094 TCGGTCAAACTTGCACTCGT 60.179 50.000 0.00 0.00 0.00 4.18
2798 2872 0.655733 CGGTCAAACTTGCACTCGTT 59.344 50.000 0.00 0.00 0.00 3.85
2799 2873 1.063469 CGGTCAAACTTGCACTCGTTT 59.937 47.619 0.00 0.00 33.92 3.60
2800 2874 2.450160 GGTCAAACTTGCACTCGTTTG 58.550 47.619 20.85 20.85 46.90 2.93
2806 2880 5.554822 AAACTTGCACTCGTTTGACTTAA 57.445 34.783 7.04 0.00 32.55 1.85
2807 2881 5.554822 AACTTGCACTCGTTTGACTTAAA 57.445 34.783 0.00 0.00 0.00 1.52
2808 2882 5.554822 ACTTGCACTCGTTTGACTTAAAA 57.445 34.783 0.00 0.00 0.00 1.52
2809 2883 5.945155 ACTTGCACTCGTTTGACTTAAAAA 58.055 33.333 0.00 0.00 0.00 1.94
3149 3223 5.633830 ATTTCACTGCACCTTATGTTGAG 57.366 39.130 0.00 0.00 0.00 3.02
3227 3303 6.349300 AGACTCAATTACATGGTGGTGTATC 58.651 40.000 0.00 0.00 34.76 2.24
3395 3471 4.053295 ACACAGTAAAACGCGTCTATGTT 58.947 39.130 14.44 0.00 0.00 2.71
3488 3872 6.764308 AACTTGCTGCATAATGTCAATAGT 57.236 33.333 1.84 0.00 0.00 2.12
3540 3924 7.880160 TTGGCTGTTTTATGCTATAGAACAT 57.120 32.000 3.21 1.00 30.73 2.71
3719 4510 8.837788 TCACATATTCAGTCACATGATATTCC 57.162 34.615 0.00 0.00 0.00 3.01
3775 4567 5.590530 TCATTTAAATAATTGCGTGGCCT 57.409 34.783 3.32 0.00 0.00 5.19
3804 4596 5.306937 TCCTCTCTTATCAAACAGTTCCACA 59.693 40.000 0.00 0.00 0.00 4.17
3892 4684 4.273480 GTGCATAATAATCCAGCACGAACT 59.727 41.667 0.00 0.00 44.84 3.01
3910 4702 7.208080 CACGAACTTATAGCTTATACTGGGTT 58.792 38.462 0.00 0.00 0.00 4.11
3926 4718 1.877443 GGGTTTGCATAATCGGCGTAT 59.123 47.619 6.85 0.00 0.00 3.06
3945 4737 5.452777 CGTATCATCTCATGCTTCGACTAA 58.547 41.667 0.00 0.00 0.00 2.24
3981 4773 2.028203 AGTTTGGTTGTGCCCAATATGC 60.028 45.455 0.00 0.00 43.77 3.14
3994 4786 4.111916 CCCAATATGCGGAACATGTTTTC 58.888 43.478 13.36 7.60 37.95 2.29
4133 4925 4.156008 GCCGAAAACTTGGACAGTTCATAT 59.844 41.667 0.00 0.00 45.77 1.78
4154 4952 4.510038 TCCGCTACCCTATCGTTTATTC 57.490 45.455 0.00 0.00 0.00 1.75
4155 4953 3.890756 TCCGCTACCCTATCGTTTATTCA 59.109 43.478 0.00 0.00 0.00 2.57
4156 4954 3.985925 CCGCTACCCTATCGTTTATTCAC 59.014 47.826 0.00 0.00 0.00 3.18
4157 4955 3.985925 CGCTACCCTATCGTTTATTCACC 59.014 47.826 0.00 0.00 0.00 4.02
4158 4956 4.261909 CGCTACCCTATCGTTTATTCACCT 60.262 45.833 0.00 0.00 0.00 4.00
4159 4957 5.608449 GCTACCCTATCGTTTATTCACCTT 58.392 41.667 0.00 0.00 0.00 3.50
4178 4976 4.144297 CCTTGATCTTCACCTTGTCCAAA 58.856 43.478 0.00 0.00 0.00 3.28
4203 5001 2.877300 GCAATCCTCTCCTGCTTGTTGA 60.877 50.000 0.00 0.00 33.20 3.18
4286 5084 4.577283 ACCTTGTTACTAAACGTTGCATGT 59.423 37.500 0.00 1.27 38.53 3.21
4473 5271 2.605338 CCAGATGCGTCAAAAACACTGG 60.605 50.000 8.99 0.00 37.81 4.00
4476 5274 4.072131 AGATGCGTCAAAAACACTGGTAT 58.928 39.130 8.99 0.00 0.00 2.73
4492 5290 0.882042 GTATGTGGCTGGAGCATCGG 60.882 60.000 0.20 0.00 44.36 4.18
4532 5330 4.849883 GGATACATATCAGCCGAGTATCG 58.150 47.826 0.00 0.00 45.82 2.92
4545 5343 3.067721 GAGTATCGCCCGATATAGCAC 57.932 52.381 12.83 3.53 39.04 4.40
4656 5639 2.975489 CAGCATGACCCTAGTTATCCCT 59.025 50.000 0.00 0.00 39.69 4.20
4657 5640 3.392616 CAGCATGACCCTAGTTATCCCTT 59.607 47.826 0.00 0.00 39.69 3.95
4662 5645 1.349067 CCCTAGTTATCCCTTCCCGG 58.651 60.000 0.00 0.00 0.00 5.73
4674 5657 3.566016 TTCCCGGTGCCCCCTTCTA 62.566 63.158 0.00 0.00 0.00 2.10
4880 5863 1.142465 CTACCTCCTGGAGCATGCAAT 59.858 52.381 21.98 0.00 34.45 3.56
5050 6033 4.494091 ACTGAAGCAATGTACAGCCTAT 57.506 40.909 0.33 0.00 34.25 2.57
5172 6155 3.489229 GCGAGTTAGCCAATGAATTTCCC 60.489 47.826 0.00 0.00 0.00 3.97
5664 6748 1.308998 AAAAAGTGTGGGCTCTGTCG 58.691 50.000 0.00 0.00 0.00 4.35
5683 6767 7.758495 TCTGTCGATATATTATGAAGCGCTAA 58.242 34.615 12.05 0.13 0.00 3.09
5684 6768 7.910683 TCTGTCGATATATTATGAAGCGCTAAG 59.089 37.037 12.05 0.00 0.00 2.18
5733 6817 7.674348 TCTCCTTGAACTCTGGTTATTTAGAGA 59.326 37.037 8.13 0.00 42.34 3.10
5808 6893 6.763135 TGTTTGCAGGTATAGAGATTGATGAC 59.237 38.462 0.00 0.00 0.00 3.06
6285 7370 3.621794 CAAAGGAGAAAACAAGAGTGCG 58.378 45.455 0.00 0.00 0.00 5.34
6387 7472 0.394565 AGACGAGGCTGCAGACTTTT 59.605 50.000 26.28 14.11 30.09 2.27
7113 8198 5.178623 TGACGACACATGAATTTACTGGTTC 59.821 40.000 0.00 0.00 0.00 3.62
7275 8360 8.617809 GTTCCTTCTTGTCAAGTTGTATTACAA 58.382 33.333 12.30 5.14 35.42 2.41
7364 8449 2.121786 CTGCTGCACACATTTGACAAC 58.878 47.619 0.00 0.00 0.00 3.32
7402 8487 5.263968 AGTACTTAGGATGTTGTGATCCG 57.736 43.478 0.00 0.00 45.93 4.18
7421 8506 3.199946 TCCGTAGCTCATTTCTTGGGAAT 59.800 43.478 0.00 0.00 0.00 3.01
7519 8604 9.099454 ACTTTCAATCTTGGTACTTCGATTATC 57.901 33.333 0.00 0.00 0.00 1.75
7569 8654 3.699038 GCACCAGGGAATATTGTTAGCAA 59.301 43.478 0.00 0.00 39.16 3.91
7644 8729 3.055819 TGTTAGAAGTGGCATGGACTCTC 60.056 47.826 0.00 0.00 0.00 3.20
7645 8730 1.949799 AGAAGTGGCATGGACTCTCT 58.050 50.000 0.00 0.00 0.00 3.10
7646 8731 1.830477 AGAAGTGGCATGGACTCTCTC 59.170 52.381 0.00 0.00 0.00 3.20
7648 8733 0.323816 AGTGGCATGGACTCTCTCGA 60.324 55.000 0.00 0.00 0.00 4.04
7650 8735 1.066858 GTGGCATGGACTCTCTCGAAA 60.067 52.381 0.00 0.00 0.00 3.46
7651 8736 1.623311 TGGCATGGACTCTCTCGAAAA 59.377 47.619 0.00 0.00 0.00 2.29
7652 8737 2.237143 TGGCATGGACTCTCTCGAAAAT 59.763 45.455 0.00 0.00 0.00 1.82
7653 8738 3.274288 GGCATGGACTCTCTCGAAAATT 58.726 45.455 0.00 0.00 0.00 1.82
7654 8739 3.311048 GGCATGGACTCTCTCGAAAATTC 59.689 47.826 0.00 0.00 0.00 2.17
7670 8755 5.164196 CGAAAATTCACAAGTTTGGCATACG 60.164 40.000 2.39 0.00 0.00 3.06
7789 8876 4.768583 TGTAGGTTTTGTACTCACGGTTT 58.231 39.130 0.00 0.00 0.00 3.27
7790 8877 4.810491 TGTAGGTTTTGTACTCACGGTTTC 59.190 41.667 0.00 0.00 0.00 2.78
7791 8878 3.876341 AGGTTTTGTACTCACGGTTTCA 58.124 40.909 0.00 0.00 0.00 2.69
7792 8879 3.624410 AGGTTTTGTACTCACGGTTTCAC 59.376 43.478 0.00 0.00 0.00 3.18
7793 8880 3.374678 GGTTTTGTACTCACGGTTTCACA 59.625 43.478 0.00 0.00 0.00 3.58
7794 8881 4.142643 GGTTTTGTACTCACGGTTTCACAA 60.143 41.667 0.00 0.00 0.00 3.33
7795 8882 5.392286 GTTTTGTACTCACGGTTTCACAAA 58.608 37.500 0.00 0.00 34.24 2.83
7796 8883 5.821516 TTTGTACTCACGGTTTCACAAAT 57.178 34.783 0.00 0.00 32.37 2.32
7797 8884 5.821516 TTGTACTCACGGTTTCACAAATT 57.178 34.783 0.00 0.00 0.00 1.82
7798 8885 5.821516 TGTACTCACGGTTTCACAAATTT 57.178 34.783 0.00 0.00 0.00 1.82
7799 8886 5.812652 TGTACTCACGGTTTCACAAATTTC 58.187 37.500 0.00 0.00 0.00 2.17
7800 8887 5.587043 TGTACTCACGGTTTCACAAATTTCT 59.413 36.000 0.00 0.00 0.00 2.52
7801 8888 6.762187 TGTACTCACGGTTTCACAAATTTCTA 59.238 34.615 0.00 0.00 0.00 2.10
7802 8889 6.056428 ACTCACGGTTTCACAAATTTCTAC 57.944 37.500 0.00 0.00 0.00 2.59
7803 8890 5.820947 ACTCACGGTTTCACAAATTTCTACT 59.179 36.000 0.00 0.00 0.00 2.57
7804 8891 6.055231 TCACGGTTTCACAAATTTCTACTG 57.945 37.500 0.00 0.00 0.00 2.74
7805 8892 5.587043 TCACGGTTTCACAAATTTCTACTGT 59.413 36.000 0.00 0.00 0.00 3.55
7806 8893 5.907391 CACGGTTTCACAAATTTCTACTGTC 59.093 40.000 0.00 0.00 0.00 3.51
7807 8894 5.008316 ACGGTTTCACAAATTTCTACTGTCC 59.992 40.000 0.00 0.00 0.00 4.02
7808 8895 5.238650 CGGTTTCACAAATTTCTACTGTCCT 59.761 40.000 0.00 0.00 0.00 3.85
7809 8896 6.425721 CGGTTTCACAAATTTCTACTGTCCTA 59.574 38.462 0.00 0.00 0.00 2.94
7810 8897 7.570691 CGGTTTCACAAATTTCTACTGTCCTAC 60.571 40.741 0.00 0.00 0.00 3.18
7819 8922 8.611051 AATTTCTACTGTCCTACTGTCCTATT 57.389 34.615 0.00 0.00 32.45 1.73
7881 8984 1.068055 CAGCAGGCTTTGGCTTTGTAG 60.068 52.381 0.00 0.00 38.56 2.74
7944 9050 4.055360 TCTGTCCCATATTAATTGTCGCG 58.945 43.478 0.00 0.00 0.00 5.87
7958 9064 0.372334 GTCGCGCAAACGGATGTATT 59.628 50.000 8.75 0.00 40.57 1.89
7982 9093 3.370978 ACATCCGTTTGAGCGACAATTAG 59.629 43.478 0.00 0.00 38.36 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.704572 GAGTCAAGGTAGCTGCACAAT 58.295 47.619 3.61 0.00 0.00 2.71
116 119 6.483640 GTCCTGACCTATTATTTCATGTGGTC 59.516 42.308 0.00 0.00 41.81 4.02
191 196 5.279910 CCTTCCTCTGTCCATAATCCATCTC 60.280 48.000 0.00 0.00 0.00 2.75
222 227 2.177950 CAGAACCATGCCTGCTCAC 58.822 57.895 0.00 0.00 0.00 3.51
223 228 4.728409 CAGAACCATGCCTGCTCA 57.272 55.556 0.00 0.00 0.00 4.26
428 434 4.103153 CCAAGGAGGCAAATATAGACCTGA 59.897 45.833 0.00 0.00 30.95 3.86
609 616 7.893302 TCCAGGGAATTACAATTCAGTTTACAT 59.107 33.333 14.80 0.00 45.10 2.29
676 683 9.900710 TTGTTTGAAAAAGCATATTACGTATGT 57.099 25.926 0.00 0.00 41.86 2.29
741 750 0.106708 AGTGCAAGAACCTGCTCGAA 59.893 50.000 0.00 0.00 43.07 3.71
792 802 1.062428 TCCCCATGTCCTCCTACGAAT 60.062 52.381 0.00 0.00 0.00 3.34
814 824 3.391382 GGCTACCCGTGCTGACCT 61.391 66.667 0.00 0.00 0.00 3.85
815 825 4.468689 GGGCTACCCGTGCTGACC 62.469 72.222 0.00 0.00 32.13 4.02
826 836 2.359088 CCCTACGGGTATGGGCTAC 58.641 63.158 0.00 0.00 38.25 3.58
827 837 4.959349 CCCTACGGGTATGGGCTA 57.041 61.111 0.00 0.00 38.25 3.93
830 840 1.052124 TTCAGCCCTACGGGTATGGG 61.052 60.000 0.21 8.26 46.51 4.00
833 868 2.134092 GCTTCAGCCCTACGGGTAT 58.866 57.895 0.21 0.00 46.51 2.73
850 885 3.747976 GGGAATGCACGTGTGGGC 61.748 66.667 18.38 2.58 0.00 5.36
917 953 3.788227 TGGGGAATGGAATAGAATCGG 57.212 47.619 0.00 0.00 0.00 4.18
1104 1155 4.666397 TTACGCACCGGCTCGCAA 62.666 61.111 14.79 6.67 38.10 4.85
1169 1220 4.465446 CCTCCCGCTCCTCCTCCA 62.465 72.222 0.00 0.00 0.00 3.86
1501 1559 1.750399 GTAGCGGTACAGACGGGGA 60.750 63.158 19.43 0.00 0.00 4.81
1525 1583 1.153628 GGAGCGACTGTATTGCGGT 60.154 57.895 0.00 0.00 43.34 5.68
1541 1599 0.604578 GTGTAACCGCACAGTAGGGA 59.395 55.000 0.00 0.00 39.07 4.20
1545 1603 1.489574 CAACGTGTAACCGCACAGTA 58.510 50.000 0.00 0.00 39.19 2.74
1546 1604 1.155424 CCAACGTGTAACCGCACAGT 61.155 55.000 0.00 0.00 39.19 3.55
1547 1605 1.155424 ACCAACGTGTAACCGCACAG 61.155 55.000 0.00 0.00 39.19 3.66
1548 1606 0.743701 AACCAACGTGTAACCGCACA 60.744 50.000 0.00 0.00 39.19 4.57
1554 1613 2.032636 GCCACTGTAACCAACGTGTAAC 60.033 50.000 0.00 0.00 33.53 2.50
1556 1615 1.138464 TGCCACTGTAACCAACGTGTA 59.862 47.619 0.00 0.00 33.53 2.90
1568 1627 9.060347 CATAATTTATAGTTCAGATGCCACTGT 57.940 33.333 7.04 0.00 38.79 3.55
1637 1696 1.688197 CCAAGCATCCAACAACAACCT 59.312 47.619 0.00 0.00 0.00 3.50
1698 1760 3.835395 ACAGAACAGACCCCTAAGAAGAG 59.165 47.826 0.00 0.00 0.00 2.85
1723 1786 5.612725 TGGCAACAGTGATATACATCTGA 57.387 39.130 0.00 0.00 46.17 3.27
1743 1806 6.440010 AGGACACATCTAATCTCCAGATATGG 59.560 42.308 0.00 0.00 32.36 2.74
1761 1824 4.574892 TCTATTCAATCGCAAAGGACACA 58.425 39.130 0.00 0.00 0.00 3.72
1787 1852 9.832445 ATTGAACATAATCGGTAACAGTATCTT 57.168 29.630 0.00 0.00 0.00 2.40
1796 1861 7.822334 AGAAGTGTGATTGAACATAATCGGTAA 59.178 33.333 0.00 0.00 39.39 2.85
1801 1866 9.371136 TCACTAGAAGTGTGATTGAACATAATC 57.629 33.333 6.93 0.00 46.03 1.75
1842 1907 1.134965 CCGAGACTCACCATTCTGTCC 60.135 57.143 2.82 0.00 0.00 4.02
1843 1908 1.546476 ACCGAGACTCACCATTCTGTC 59.454 52.381 2.82 0.00 0.00 3.51
1868 1933 2.144450 TCTAGGTAGATGGCCCTCAGA 58.856 52.381 10.92 1.07 32.08 3.27
1878 1943 5.905913 ACAATAAGGCCAGTTCTAGGTAGAT 59.094 40.000 5.01 0.00 31.40 1.98
1879 1944 5.278061 ACAATAAGGCCAGTTCTAGGTAGA 58.722 41.667 5.01 0.00 0.00 2.59
1880 1945 5.615925 ACAATAAGGCCAGTTCTAGGTAG 57.384 43.478 5.01 0.00 0.00 3.18
1881 1946 6.097839 CACTACAATAAGGCCAGTTCTAGGTA 59.902 42.308 5.01 0.00 0.00 3.08
1882 1947 5.030820 ACTACAATAAGGCCAGTTCTAGGT 58.969 41.667 5.01 0.00 0.00 3.08
1883 1948 5.104900 ACACTACAATAAGGCCAGTTCTAGG 60.105 44.000 5.01 0.00 0.00 3.02
1884 1949 5.978814 ACACTACAATAAGGCCAGTTCTAG 58.021 41.667 5.01 0.66 0.00 2.43
1885 1950 5.720041 AGACACTACAATAAGGCCAGTTCTA 59.280 40.000 5.01 0.00 0.00 2.10
1923 1990 2.210644 AGGTACCTCCTAGAGCTCAGT 58.789 52.381 17.77 5.71 46.10 3.41
1949 2016 5.879237 TGATCATCTCGTATTTTGCCAAAC 58.121 37.500 0.00 0.00 0.00 2.93
2157 2228 7.221452 CACTTAACATGACGGTTATGGTACTAC 59.779 40.741 16.08 0.00 34.48 2.73
2171 2242 6.312399 TCCAACATGAACACTTAACATGAC 57.688 37.500 12.24 0.00 42.41 3.06
2175 2246 4.582240 TGCATCCAACATGAACACTTAACA 59.418 37.500 0.00 0.00 0.00 2.41
2177 2248 4.582240 TGTGCATCCAACATGAACACTTAA 59.418 37.500 0.00 0.00 32.89 1.85
2192 2264 1.039233 CCATCCCCAACTGTGCATCC 61.039 60.000 0.00 0.00 0.00 3.51
2318 2390 1.798813 GTAGCTTGACAAACCGAGGTG 59.201 52.381 0.00 0.00 31.36 4.00
2587 2661 6.183361 CCTTATATTTTGGAACGGAGGGAGTA 60.183 42.308 0.00 0.00 0.00 2.59
2588 2662 5.397559 CCTTATATTTTGGAACGGAGGGAGT 60.398 44.000 0.00 0.00 0.00 3.85
2589 2663 5.063880 CCTTATATTTTGGAACGGAGGGAG 58.936 45.833 0.00 0.00 0.00 4.30
2590 2664 4.475747 ACCTTATATTTTGGAACGGAGGGA 59.524 41.667 0.00 0.00 0.00 4.20
2591 2665 4.578928 CACCTTATATTTTGGAACGGAGGG 59.421 45.833 0.00 0.00 0.00 4.30
2592 2666 5.190677 ACACCTTATATTTTGGAACGGAGG 58.809 41.667 0.00 0.00 0.00 4.30
2593 2667 8.342634 CAATACACCTTATATTTTGGAACGGAG 58.657 37.037 0.00 0.00 0.00 4.63
2594 2668 7.283580 CCAATACACCTTATATTTTGGAACGGA 59.716 37.037 0.00 0.00 35.29 4.69
2595 2669 7.067737 ACCAATACACCTTATATTTTGGAACGG 59.932 37.037 5.84 0.00 36.49 4.44
2596 2670 7.992008 ACCAATACACCTTATATTTTGGAACG 58.008 34.615 5.84 0.00 36.49 3.95
2599 2673 8.973182 GGAAACCAATACACCTTATATTTTGGA 58.027 33.333 5.84 0.00 36.49 3.53
2600 2674 7.918562 CGGAAACCAATACACCTTATATTTTGG 59.081 37.037 0.00 0.00 38.43 3.28
2601 2675 8.463607 ACGGAAACCAATACACCTTATATTTTG 58.536 33.333 0.00 0.00 0.00 2.44
2602 2676 8.463607 CACGGAAACCAATACACCTTATATTTT 58.536 33.333 0.00 0.00 0.00 1.82
2603 2677 7.415877 GCACGGAAACCAATACACCTTATATTT 60.416 37.037 0.00 0.00 0.00 1.40
2604 2678 6.038936 GCACGGAAACCAATACACCTTATATT 59.961 38.462 0.00 0.00 0.00 1.28
2605 2679 5.529800 GCACGGAAACCAATACACCTTATAT 59.470 40.000 0.00 0.00 0.00 0.86
2606 2680 4.877251 GCACGGAAACCAATACACCTTATA 59.123 41.667 0.00 0.00 0.00 0.98
2607 2681 3.692593 GCACGGAAACCAATACACCTTAT 59.307 43.478 0.00 0.00 0.00 1.73
2608 2682 3.075884 GCACGGAAACCAATACACCTTA 58.924 45.455 0.00 0.00 0.00 2.69
2609 2683 1.883926 GCACGGAAACCAATACACCTT 59.116 47.619 0.00 0.00 0.00 3.50
2610 2684 1.202830 TGCACGGAAACCAATACACCT 60.203 47.619 0.00 0.00 0.00 4.00
2611 2685 1.240256 TGCACGGAAACCAATACACC 58.760 50.000 0.00 0.00 0.00 4.16
2612 2686 2.292292 ACTTGCACGGAAACCAATACAC 59.708 45.455 0.00 0.00 0.00 2.90
2613 2687 2.550606 GACTTGCACGGAAACCAATACA 59.449 45.455 0.00 0.00 0.00 2.29
2614 2688 2.550606 TGACTTGCACGGAAACCAATAC 59.449 45.455 0.00 0.00 0.00 1.89
2615 2689 2.852449 TGACTTGCACGGAAACCAATA 58.148 42.857 0.00 0.00 0.00 1.90
2616 2690 1.686355 TGACTTGCACGGAAACCAAT 58.314 45.000 0.00 0.00 0.00 3.16
2617 2691 1.133407 GTTGACTTGCACGGAAACCAA 59.867 47.619 0.00 0.00 0.00 3.67
2618 2692 0.736053 GTTGACTTGCACGGAAACCA 59.264 50.000 0.00 0.00 0.00 3.67
2619 2693 0.030235 GGTTGACTTGCACGGAAACC 59.970 55.000 11.74 11.74 0.00 3.27
2620 2694 0.736053 TGGTTGACTTGCACGGAAAC 59.264 50.000 0.00 0.00 0.00 2.78
2621 2695 1.686355 ATGGTTGACTTGCACGGAAA 58.314 45.000 0.00 0.00 0.00 3.13
2622 2696 1.686355 AATGGTTGACTTGCACGGAA 58.314 45.000 0.00 0.00 0.00 4.30
2623 2697 1.336440 CAAATGGTTGACTTGCACGGA 59.664 47.619 0.00 0.00 36.83 4.69
2624 2698 1.336440 TCAAATGGTTGACTTGCACGG 59.664 47.619 0.00 0.00 38.88 4.94
2625 2699 2.772568 TCAAATGGTTGACTTGCACG 57.227 45.000 0.00 0.00 38.88 5.34
2626 2700 4.370917 ACATTCAAATGGTTGACTTGCAC 58.629 39.130 7.58 0.00 43.52 4.57
2627 2701 4.669206 ACATTCAAATGGTTGACTTGCA 57.331 36.364 7.58 0.00 43.52 4.08
2628 2702 5.989551 AAACATTCAAATGGTTGACTTGC 57.010 34.783 5.24 0.00 44.21 4.01
2635 2709 6.232581 TCTTGGTCAAACATTCAAATGGTT 57.767 33.333 7.58 4.05 46.69 3.67
2636 2710 5.867903 TCTTGGTCAAACATTCAAATGGT 57.132 34.783 7.58 0.00 40.70 3.55
2673 2747 9.845740 TGTCTATTAGGTATTGCATATGTTGTT 57.154 29.630 4.29 0.00 0.00 2.83
2674 2748 9.845740 TTGTCTATTAGGTATTGCATATGTTGT 57.154 29.630 4.29 0.00 0.00 3.32
2700 2774 9.699410 TCCATCATGAAAAGTAGTTCCATATTT 57.301 29.630 0.00 0.00 0.00 1.40
2701 2775 9.872684 ATCCATCATGAAAAGTAGTTCCATATT 57.127 29.630 0.00 0.00 0.00 1.28
2702 2776 9.512588 GATCCATCATGAAAAGTAGTTCCATAT 57.487 33.333 0.00 0.00 0.00 1.78
2703 2777 8.493607 TGATCCATCATGAAAAGTAGTTCCATA 58.506 33.333 0.00 0.00 0.00 2.74
2704 2778 7.348815 TGATCCATCATGAAAAGTAGTTCCAT 58.651 34.615 0.00 0.00 0.00 3.41
2705 2779 6.720309 TGATCCATCATGAAAAGTAGTTCCA 58.280 36.000 0.00 0.00 0.00 3.53
2706 2780 7.630242 TTGATCCATCATGAAAAGTAGTTCC 57.370 36.000 0.00 0.00 36.56 3.62
2707 2781 9.512435 CATTTGATCCATCATGAAAAGTAGTTC 57.488 33.333 0.00 0.00 36.56 3.01
2708 2782 9.246670 TCATTTGATCCATCATGAAAAGTAGTT 57.753 29.630 0.00 0.00 36.56 2.24
2709 2783 8.812513 TCATTTGATCCATCATGAAAAGTAGT 57.187 30.769 0.00 0.00 36.56 2.73
2764 2838 9.083080 CAAGTTTGACCGAGTTTTTAGAAAAAT 57.917 29.630 3.64 0.00 39.75 1.82
2765 2839 7.062488 GCAAGTTTGACCGAGTTTTTAGAAAAA 59.938 33.333 0.00 0.00 35.67 1.94
2766 2840 6.528774 GCAAGTTTGACCGAGTTTTTAGAAAA 59.471 34.615 0.00 0.00 0.00 2.29
2767 2841 6.031471 GCAAGTTTGACCGAGTTTTTAGAAA 58.969 36.000 0.00 0.00 0.00 2.52
2768 2842 5.124138 TGCAAGTTTGACCGAGTTTTTAGAA 59.876 36.000 0.00 0.00 0.00 2.10
2769 2843 4.636648 TGCAAGTTTGACCGAGTTTTTAGA 59.363 37.500 0.00 0.00 0.00 2.10
2770 2844 4.733405 GTGCAAGTTTGACCGAGTTTTTAG 59.267 41.667 0.00 0.00 0.00 1.85
2771 2845 4.396790 AGTGCAAGTTTGACCGAGTTTTTA 59.603 37.500 0.00 0.00 0.00 1.52
2772 2846 3.192633 AGTGCAAGTTTGACCGAGTTTTT 59.807 39.130 0.00 0.00 0.00 1.94
2773 2847 2.752903 AGTGCAAGTTTGACCGAGTTTT 59.247 40.909 0.00 0.00 0.00 2.43
2774 2848 2.354821 GAGTGCAAGTTTGACCGAGTTT 59.645 45.455 0.00 0.00 0.00 2.66
2775 2849 1.940613 GAGTGCAAGTTTGACCGAGTT 59.059 47.619 0.00 0.00 0.00 3.01
2776 2850 1.583054 GAGTGCAAGTTTGACCGAGT 58.417 50.000 0.00 0.00 0.00 4.18
2777 2851 0.508641 CGAGTGCAAGTTTGACCGAG 59.491 55.000 0.00 0.00 0.00 4.63
2778 2852 0.179094 ACGAGTGCAAGTTTGACCGA 60.179 50.000 0.00 0.00 0.00 4.69
2779 2853 0.655733 AACGAGTGCAAGTTTGACCG 59.344 50.000 0.00 0.00 0.00 4.79
2780 2854 2.844122 AAACGAGTGCAAGTTTGACC 57.156 45.000 13.25 0.00 38.90 4.02
2784 2858 5.554822 TTAAGTCAAACGAGTGCAAGTTT 57.445 34.783 9.52 9.52 40.74 2.66
2785 2859 5.554822 TTTAAGTCAAACGAGTGCAAGTT 57.445 34.783 0.00 0.00 0.00 2.66
2786 2860 5.554822 TTTTAAGTCAAACGAGTGCAAGT 57.445 34.783 0.00 0.00 0.00 3.16
2824 2898 5.742063 ACTCCCTCCGTTCCTTTATTTAAG 58.258 41.667 0.00 0.00 0.00 1.85
2825 2899 5.767277 ACTCCCTCCGTTCCTTTATTTAA 57.233 39.130 0.00 0.00 0.00 1.52
2826 2900 6.872585 TTACTCCCTCCGTTCCTTTATTTA 57.127 37.500 0.00 0.00 0.00 1.40
2827 2901 5.767277 TTACTCCCTCCGTTCCTTTATTT 57.233 39.130 0.00 0.00 0.00 1.40
2828 2902 5.970501 ATTACTCCCTCCGTTCCTTTATT 57.029 39.130 0.00 0.00 0.00 1.40
2829 2903 5.970501 AATTACTCCCTCCGTTCCTTTAT 57.029 39.130 0.00 0.00 0.00 1.40
2830 2904 5.493809 CAAATTACTCCCTCCGTTCCTTTA 58.506 41.667 0.00 0.00 0.00 1.85
2831 2905 4.332828 CAAATTACTCCCTCCGTTCCTTT 58.667 43.478 0.00 0.00 0.00 3.11
2832 2906 3.872630 GCAAATTACTCCCTCCGTTCCTT 60.873 47.826 0.00 0.00 0.00 3.36
2833 2907 2.355818 GCAAATTACTCCCTCCGTTCCT 60.356 50.000 0.00 0.00 0.00 3.36
2834 2908 2.014857 GCAAATTACTCCCTCCGTTCC 58.985 52.381 0.00 0.00 0.00 3.62
2835 2909 2.706890 TGCAAATTACTCCCTCCGTTC 58.293 47.619 0.00 0.00 0.00 3.95
2836 2910 2.817844 GTTGCAAATTACTCCCTCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
2837 2911 2.433436 GTTGCAAATTACTCCCTCCGT 58.567 47.619 0.00 0.00 0.00 4.69
2838 2912 1.396996 CGTTGCAAATTACTCCCTCCG 59.603 52.381 0.00 0.00 0.00 4.63
2839 2913 1.743394 CCGTTGCAAATTACTCCCTCC 59.257 52.381 0.00 0.00 0.00 4.30
2840 2914 2.433436 ACCGTTGCAAATTACTCCCTC 58.567 47.619 0.00 0.00 0.00 4.30
2841 2915 2.579410 ACCGTTGCAAATTACTCCCT 57.421 45.000 0.00 0.00 0.00 4.20
2842 2916 2.554893 TGAACCGTTGCAAATTACTCCC 59.445 45.455 0.00 0.00 0.00 4.30
2843 2917 3.907894 TGAACCGTTGCAAATTACTCC 57.092 42.857 0.00 0.00 0.00 3.85
2844 2918 6.375377 TGTTATGAACCGTTGCAAATTACTC 58.625 36.000 0.00 0.00 0.00 2.59
2845 2919 6.320494 TGTTATGAACCGTTGCAAATTACT 57.680 33.333 0.00 0.00 0.00 2.24
2846 2920 8.742188 CATATGTTATGAACCGTTGCAAATTAC 58.258 33.333 0.00 0.00 0.00 1.89
3227 3303 7.218204 GCACAATTATTTTACTGGAAAGCTACG 59.782 37.037 0.00 0.00 0.00 3.51
3540 3924 6.765036 TGAAAGCATTGGCAAAATTTCAGTAA 59.235 30.769 22.91 9.57 44.61 2.24
3614 3998 6.520792 TTCAACTCGTTTAGAAAGTAGTGC 57.479 37.500 0.00 0.00 0.00 4.40
3768 4560 2.990066 AGAGAGGATTTAAGGCCACG 57.010 50.000 5.01 0.00 0.00 4.94
3775 4567 9.449719 GGAACTGTTTGATAAGAGAGGATTTAA 57.550 33.333 0.00 0.00 0.00 1.52
3804 4596 8.715088 GTGTTCATAGTCGTTTTTAGTGGTAAT 58.285 33.333 0.00 0.00 0.00 1.89
3910 4702 3.925379 AGATGATACGCCGATTATGCAA 58.075 40.909 0.00 0.00 0.00 4.08
3926 4718 8.576442 TGTATATTTAGTCGAAGCATGAGATGA 58.424 33.333 0.00 0.00 0.00 2.92
3969 4761 1.032014 ATGTTCCGCATATTGGGCAC 58.968 50.000 0.00 0.00 35.74 5.01
3981 4773 4.829064 TCAGGAAAGAAAACATGTTCCG 57.171 40.909 12.39 4.80 43.60 4.30
4133 4925 3.890756 TGAATAAACGATAGGGTAGCGGA 59.109 43.478 0.00 0.00 42.70 5.54
4154 4952 3.077359 GGACAAGGTGAAGATCAAGGTG 58.923 50.000 0.00 0.00 0.00 4.00
4155 4953 2.711009 TGGACAAGGTGAAGATCAAGGT 59.289 45.455 0.00 0.00 0.00 3.50
4156 4954 3.423539 TGGACAAGGTGAAGATCAAGG 57.576 47.619 0.00 0.00 0.00 3.61
4157 4955 4.217118 CCTTTGGACAAGGTGAAGATCAAG 59.783 45.833 0.00 0.00 32.78 3.02
4158 4956 4.141274 TCCTTTGGACAAGGTGAAGATCAA 60.141 41.667 0.00 0.00 38.55 2.57
4159 4957 3.394274 TCCTTTGGACAAGGTGAAGATCA 59.606 43.478 0.00 0.00 38.55 2.92
4203 5001 3.260475 TGGCTGTCGTACTAATTGCAT 57.740 42.857 0.00 0.00 0.00 3.96
4286 5084 5.237127 CGCATCTGATTTTAGTTGCCTATGA 59.763 40.000 0.00 0.00 39.21 2.15
4392 5190 5.249393 AGGTATATAATCTTGGGACTGCCTG 59.751 44.000 0.00 0.00 0.00 4.85
4473 5271 0.882042 CCGATGCTCCAGCCACATAC 60.882 60.000 0.00 0.00 41.18 2.39
4476 5274 2.315781 GATCCGATGCTCCAGCCACA 62.316 60.000 0.00 0.00 41.18 4.17
4492 5290 5.989168 TGTATCCAACATGTCAATACGGATC 59.011 40.000 0.00 0.00 33.86 3.36
4532 5330 3.040147 TGCTTTAGTGCTATATCGGGC 57.960 47.619 0.00 0.00 0.00 6.13
4662 5645 0.470341 GAGTGGATAGAAGGGGGCAC 59.530 60.000 0.00 0.00 0.00 5.01
4674 5657 0.046242 TTGGATCAGGGGGAGTGGAT 59.954 55.000 0.00 0.00 0.00 3.41
4950 5933 4.939439 ACCAATACAAGGATACGTTTGACC 59.061 41.667 4.77 0.00 46.39 4.02
5050 6033 1.067416 AACGTCTGAGCACGCTTCA 59.933 52.632 0.00 0.00 43.93 3.02
5172 6155 8.733458 TCATTTCAGTATCAAGGAATTCACTTG 58.267 33.333 21.39 21.39 45.08 3.16
5284 6267 9.178758 ACCATTTTAACCTATTTCTCTAGCAAG 57.821 33.333 0.00 0.00 0.00 4.01
5285 6268 9.528489 AACCATTTTAACCTATTTCTCTAGCAA 57.472 29.630 0.00 0.00 0.00 3.91
5444 6429 1.457346 CCAAAGCATGGGAGTCTGAC 58.543 55.000 0.00 0.00 46.27 3.51
5603 6687 7.334671 GGTAACCTAATAAGATAGCAATGAGGC 59.665 40.741 0.00 0.00 0.00 4.70
5664 6748 5.332656 GCGGCTTAGCGCTTCATAATATATC 60.333 44.000 18.68 0.00 39.13 1.63
5683 6767 2.403252 AGCAAACTATGTTAGCGGCT 57.597 45.000 7.98 7.98 0.00 5.52
5684 6768 2.477863 CCAAGCAAACTATGTTAGCGGC 60.478 50.000 0.00 0.00 0.00 6.53
5685 6769 3.006940 TCCAAGCAAACTATGTTAGCGG 58.993 45.455 0.00 0.00 0.00 5.52
5686 6770 4.572389 AGATCCAAGCAAACTATGTTAGCG 59.428 41.667 0.00 0.00 0.00 4.26
5687 6771 5.008118 GGAGATCCAAGCAAACTATGTTAGC 59.992 44.000 0.00 0.00 35.64 3.09
5688 6772 6.352516 AGGAGATCCAAGCAAACTATGTTAG 58.647 40.000 0.92 0.00 38.89 2.34
5689 6773 6.313519 AGGAGATCCAAGCAAACTATGTTA 57.686 37.500 0.92 0.00 38.89 2.41
5690 6774 5.184892 AGGAGATCCAAGCAAACTATGTT 57.815 39.130 0.92 0.00 38.89 2.71
5808 6893 0.095935 CAAATCGTGCAAGCTCCTCG 59.904 55.000 0.00 0.00 0.00 4.63
6024 7109 3.515286 CCAGCAATGCCTCCTGCG 61.515 66.667 0.00 0.00 45.60 5.18
6285 7370 1.282875 GCGTTCAGAAGCACCAACC 59.717 57.895 0.00 0.00 0.00 3.77
6387 7472 7.195818 AGGAACTTTACCACTCTCGCAAGAA 62.196 44.000 0.00 0.00 42.44 2.52
6432 7517 5.014966 AGGCCCTTCATGCTTCAATATATCT 59.985 40.000 0.00 0.00 0.00 1.98
6654 7739 7.362802 AGAGGACCAGGTTCTACATTATTAC 57.637 40.000 0.00 0.00 0.00 1.89
6918 8003 7.929941 GATTCCTTTGTAGAATCCAGAAACT 57.070 36.000 2.72 0.00 42.45 2.66
7275 8360 6.440965 GGGGCCTATGAAGTATAACTGATAGT 59.559 42.308 0.84 0.00 0.00 2.12
7569 8654 5.010922 ACATTATCAAACTGTGCACAATGGT 59.989 36.000 21.98 17.66 0.00 3.55
7644 8729 4.358851 TGCCAAACTTGTGAATTTTCGAG 58.641 39.130 0.00 0.00 0.00 4.04
7645 8730 4.377839 TGCCAAACTTGTGAATTTTCGA 57.622 36.364 0.00 0.00 0.00 3.71
7646 8731 5.164196 CGTATGCCAAACTTGTGAATTTTCG 60.164 40.000 0.00 0.00 0.00 3.46
7648 8733 5.461737 CACGTATGCCAAACTTGTGAATTTT 59.538 36.000 0.00 0.00 0.00 1.82
7650 8735 4.277174 TCACGTATGCCAAACTTGTGAATT 59.723 37.500 0.00 0.00 32.48 2.17
7651 8736 3.818210 TCACGTATGCCAAACTTGTGAAT 59.182 39.130 0.00 0.00 32.48 2.57
7652 8737 3.002862 GTCACGTATGCCAAACTTGTGAA 59.997 43.478 0.00 0.00 36.72 3.18
7653 8738 2.546368 GTCACGTATGCCAAACTTGTGA 59.454 45.455 0.00 0.00 32.93 3.58
7654 8739 2.289274 TGTCACGTATGCCAAACTTGTG 59.711 45.455 0.00 0.00 0.00 3.33
7748 8835 7.889469 ACCTACAGTATTCGTAAAGAAACAGA 58.111 34.615 0.00 0.00 42.91 3.41
7789 8876 7.062749 ACAGTAGGACAGTAGAAATTTGTGA 57.937 36.000 0.00 0.00 0.00 3.58
7790 8877 6.369065 GGACAGTAGGACAGTAGAAATTTGTG 59.631 42.308 0.00 0.00 0.00 3.33
7791 8878 6.270231 AGGACAGTAGGACAGTAGAAATTTGT 59.730 38.462 0.00 0.00 0.00 2.83
7792 8879 6.702329 AGGACAGTAGGACAGTAGAAATTTG 58.298 40.000 0.00 0.00 0.00 2.32
7793 8880 6.936968 AGGACAGTAGGACAGTAGAAATTT 57.063 37.500 0.00 0.00 0.00 1.82
7794 8881 8.611051 AATAGGACAGTAGGACAGTAGAAATT 57.389 34.615 0.00 0.00 0.00 1.82
7795 8882 8.611051 AAATAGGACAGTAGGACAGTAGAAAT 57.389 34.615 0.00 0.00 0.00 2.17
7796 8883 7.123847 GGAAATAGGACAGTAGGACAGTAGAAA 59.876 40.741 0.00 0.00 0.00 2.52
7797 8884 6.606395 GGAAATAGGACAGTAGGACAGTAGAA 59.394 42.308 0.00 0.00 0.00 2.10
7798 8885 6.068971 AGGAAATAGGACAGTAGGACAGTAGA 60.069 42.308 0.00 0.00 0.00 2.59
7799 8886 6.130569 AGGAAATAGGACAGTAGGACAGTAG 58.869 44.000 0.00 0.00 0.00 2.57
7800 8887 6.088541 AGGAAATAGGACAGTAGGACAGTA 57.911 41.667 0.00 0.00 0.00 2.74
7801 8888 4.949121 AGGAAATAGGACAGTAGGACAGT 58.051 43.478 0.00 0.00 0.00 3.55
7802 8889 5.941555 AAGGAAATAGGACAGTAGGACAG 57.058 43.478 0.00 0.00 0.00 3.51
7803 8890 5.659971 GGTAAGGAAATAGGACAGTAGGACA 59.340 44.000 0.00 0.00 0.00 4.02
7804 8891 5.898397 AGGTAAGGAAATAGGACAGTAGGAC 59.102 44.000 0.00 0.00 0.00 3.85
7805 8892 6.101274 AGGTAAGGAAATAGGACAGTAGGA 57.899 41.667 0.00 0.00 0.00 2.94
7806 8893 5.009811 CGAGGTAAGGAAATAGGACAGTAGG 59.990 48.000 0.00 0.00 0.00 3.18
7807 8894 5.507650 GCGAGGTAAGGAAATAGGACAGTAG 60.508 48.000 0.00 0.00 0.00 2.57
7808 8895 4.340381 GCGAGGTAAGGAAATAGGACAGTA 59.660 45.833 0.00 0.00 0.00 2.74
7809 8896 3.132467 GCGAGGTAAGGAAATAGGACAGT 59.868 47.826 0.00 0.00 0.00 3.55
7810 8897 3.492829 GGCGAGGTAAGGAAATAGGACAG 60.493 52.174 0.00 0.00 0.00 3.51
7819 8922 2.284112 ACCGGGCGAGGTAAGGAA 60.284 61.111 6.32 0.00 43.89 3.36
7899 9004 4.101741 AGGGAGAAGCACTTATATGGTCAC 59.898 45.833 0.00 0.00 0.00 3.67
7958 9064 2.442212 TGTCGCTCAAACGGATGTAA 57.558 45.000 0.00 0.00 0.00 2.41
7982 9093 1.133544 AGTACTCCCTCCGTCCCATAC 60.134 57.143 0.00 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.