Multiple sequence alignment - TraesCS7B01G276600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G276600 chr7B 100.000 6973 0 0 1 6973 506020470 506027442 0.000000e+00 12877
1 TraesCS7B01G276600 chr7D 93.962 4124 144 44 318 4402 480049784 480053841 0.000000e+00 6139
2 TraesCS7B01G276600 chr7D 93.466 1913 52 23 4481 6359 480053837 480055710 0.000000e+00 2772
3 TraesCS7B01G276600 chr7D 87.170 265 10 9 6718 6971 480056399 480056650 5.330000e-71 279
4 TraesCS7B01G276600 chr7D 93.750 96 4 1 4396 4491 59988566 59988473 7.290000e-30 143
5 TraesCS7B01G276600 chr7A 92.674 2771 161 25 1647 4403 514827730 514824988 0.000000e+00 3954
6 TraesCS7B01G276600 chr7A 80.931 1311 111 59 376 1595 514829438 514828176 0.000000e+00 907
7 TraesCS7B01G276600 chr7A 87.696 764 78 6 5086 5837 514823535 514822776 0.000000e+00 876
8 TraesCS7B01G276600 chr7A 92.456 623 32 9 4482 5089 514824992 514824370 0.000000e+00 876
9 TraesCS7B01G276600 chr7A 84.444 450 37 20 5875 6313 514822770 514822343 5.030000e-111 412
10 TraesCS7B01G276600 chr7A 93.478 92 6 0 4391 4482 589447695 589447786 3.390000e-28 137
11 TraesCS7B01G276600 chr7A 84.354 147 10 3 6840 6973 514819606 514819460 1.580000e-26 132
12 TraesCS7B01G276600 chr1B 94.637 317 17 0 2 318 625466162 625466478 6.280000e-135 492
13 TraesCS7B01G276600 chr1B 93.750 96 6 0 4396 4491 525678722 525678817 2.030000e-30 145
14 TraesCS7B01G276600 chr2B 92.476 319 23 1 2 320 240298709 240299026 8.240000e-124 455
15 TraesCS7B01G276600 chr2A 91.925 322 25 1 2 322 166851748 166851427 3.840000e-122 449
16 TraesCS7B01G276600 chr2A 91.262 103 8 1 4391 4493 88119762 88119661 9.430000e-29 139
17 TraesCS7B01G276600 chr5B 91.250 320 28 0 2 321 612009968 612009649 2.990000e-118 436
18 TraesCS7B01G276600 chr5B 92.708 96 7 0 4388 4483 520899559 520899464 9.430000e-29 139
19 TraesCS7B01G276600 chr1D 91.250 320 28 0 2 321 469095981 469095662 2.990000e-118 436
20 TraesCS7B01G276600 chr6B 91.223 319 28 0 2 320 458011695 458012013 1.070000e-117 435
21 TraesCS7B01G276600 chr5D 91.223 319 28 0 2 320 431561665 431561983 1.070000e-117 435
22 TraesCS7B01G276600 chr5D 86.940 268 33 2 6375 6641 434422889 434422623 4.090000e-77 300
23 TraesCS7B01G276600 chr5D 90.476 105 9 1 4398 4502 277238935 277239038 3.390000e-28 137
24 TraesCS7B01G276600 chr3B 91.223 319 26 2 2 320 400302813 400302497 3.860000e-117 433
25 TraesCS7B01G276600 chr3B 88.550 262 28 2 6375 6634 77005271 77005532 4.060000e-82 316
26 TraesCS7B01G276600 chr3B 88.506 261 28 2 6375 6634 738505648 738505907 1.460000e-81 315
27 TraesCS7B01G276600 chr3D 91.167 317 28 0 2 318 420047847 420048163 1.390000e-116 431
28 TraesCS7B01G276600 chr5A 88.168 262 30 1 6374 6634 371024725 371024464 1.890000e-80 311
29 TraesCS7B01G276600 chr5A 88.168 262 28 3 6375 6634 566367238 566366978 6.790000e-80 309
30 TraesCS7B01G276600 chr5A 92.079 101 6 2 4392 4492 673184605 673184703 2.620000e-29 141
31 TraesCS7B01G276600 chr2D 87.547 265 31 2 6372 6634 76002726 76002990 8.790000e-79 305
32 TraesCS7B01G276600 chr4A 87.313 268 30 4 6375 6639 491446534 491446800 3.160000e-78 303
33 TraesCS7B01G276600 chr4A 87.938 257 29 2 6379 6634 219185627 219185372 1.140000e-77 302
34 TraesCS7B01G276600 chr4A 88.496 113 9 4 4390 4502 584048474 584048366 4.390000e-27 134
35 TraesCS7B01G276600 chr3A 86.842 266 33 2 6374 6638 70655300 70655036 5.290000e-76 296
36 TraesCS7B01G276600 chr4B 93.750 96 4 1 4396 4491 668489915 668489822 7.290000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G276600 chr7B 506020470 506027442 6972 False 12877.000000 12877 100.000000 1 6973 1 chr7B.!!$F1 6972
1 TraesCS7B01G276600 chr7D 480049784 480056650 6866 False 3063.333333 6139 91.532667 318 6971 3 chr7D.!!$F1 6653
2 TraesCS7B01G276600 chr7A 514819460 514829438 9978 True 1192.833333 3954 87.092500 376 6973 6 chr7A.!!$R1 6597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.036105 ATGAGACATGAACGCTGGCA 60.036 50.0 0.00 0.00 0.00 4.92 F
138 139 0.036105 TGAGACATGAACGCTGGCAT 60.036 50.0 0.00 0.00 0.00 4.40 F
140 141 0.036105 AGACATGAACGCTGGCATGA 60.036 50.0 13.99 0.00 43.43 3.07 F
978 1061 0.038310 CAAAGGGGTGGAGGAAGGAC 59.962 60.0 0.00 0.00 0.00 3.85 F
987 1070 0.249676 GGAGGAAGGACCCGTTTCTC 59.750 60.0 0.00 0.00 40.05 2.87 F
1937 2459 0.396435 GCCTTGGTTTTTCCCTTGGG 59.604 55.0 0.00 0.00 34.77 4.12 F
3249 3782 0.464554 GATTCTACCACCAGGCTGCC 60.465 60.0 11.65 11.65 39.06 4.85 F
3818 4351 0.304705 AGCGAAACAGACAGCAAACG 59.695 50.0 0.00 0.00 0.00 3.60 F
5460 6855 0.616964 TGGTCAGCAGAGCCTGATCT 60.617 55.0 5.81 0.00 42.24 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1428 1540 0.033601 AGTGTCACCACCAAGGCAAA 60.034 50.000 0.00 0.00 42.88 3.68 R
1751 2273 0.881118 CAAAACATGAGGGTCGTGGG 59.119 55.000 0.00 0.00 37.70 4.61 R
1930 2452 2.247358 ACTGCAAATTACACCCAAGGG 58.753 47.619 2.91 2.91 42.03 3.95 R
2150 2674 0.099436 GCACCAATGACATCGCCTTC 59.901 55.000 0.00 0.00 0.00 3.46 R
2577 3110 1.344114 GCCTCCCTGACATCATCTCTC 59.656 57.143 0.00 0.00 0.00 3.20 R
3408 3941 0.172803 GCTGCTGCAAGGAAGGATTG 59.827 55.000 11.11 0.00 39.41 2.67 R
4284 4817 5.882557 CCAGTAATCACCAGGATATATTGGC 59.117 44.000 3.70 0.00 38.03 4.52 R
5691 7094 1.068541 GGGAGTTGTTTCCGCATTGAC 60.069 52.381 0.00 0.00 38.17 3.18 R
6704 8796 0.031857 TGTTTTGCATGAAGGCGTGG 59.968 50.000 0.00 0.00 36.28 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.937278 TTTTTGTGTGCTGGCATGTG 58.063 45.000 0.00 0.00 0.00 3.21
33 34 0.822811 TTTTGTGTGCTGGCATGTGT 59.177 45.000 0.00 0.00 0.00 3.72
34 35 0.102663 TTTGTGTGCTGGCATGTGTG 59.897 50.000 0.00 0.00 0.00 3.82
69 70 2.177531 GCGCCAGCATGAACTGTG 59.822 61.111 0.00 0.00 44.35 3.66
70 71 2.872557 CGCCAGCATGAACTGTGG 59.127 61.111 0.00 0.00 39.69 4.17
71 72 1.968017 CGCCAGCATGAACTGTGGT 60.968 57.895 0.00 0.00 39.69 4.16
72 73 1.582968 GCCAGCATGAACTGTGGTG 59.417 57.895 0.00 0.00 42.92 4.17
73 74 1.582968 CCAGCATGAACTGTGGTGC 59.417 57.895 0.00 4.70 42.18 5.01
75 76 0.956633 CAGCATGAACTGTGGTGCTT 59.043 50.000 10.81 0.00 44.92 3.91
76 77 1.338973 CAGCATGAACTGTGGTGCTTT 59.661 47.619 10.81 0.00 44.92 3.51
77 78 1.610522 AGCATGAACTGTGGTGCTTTC 59.389 47.619 0.00 0.00 44.92 2.62
78 79 1.610522 GCATGAACTGTGGTGCTTTCT 59.389 47.619 0.00 0.00 34.85 2.52
79 80 2.813754 GCATGAACTGTGGTGCTTTCTA 59.186 45.455 0.00 0.00 34.85 2.10
80 81 3.253188 GCATGAACTGTGGTGCTTTCTAA 59.747 43.478 0.00 0.00 34.85 2.10
81 82 4.614535 GCATGAACTGTGGTGCTTTCTAAG 60.615 45.833 0.00 0.00 34.85 2.18
82 83 3.476552 TGAACTGTGGTGCTTTCTAAGG 58.523 45.455 0.00 0.00 0.00 2.69
83 84 1.897560 ACTGTGGTGCTTTCTAAGGC 58.102 50.000 0.00 0.00 0.00 4.35
84 85 1.168714 CTGTGGTGCTTTCTAAGGCC 58.831 55.000 0.00 0.00 0.00 5.19
85 86 0.605319 TGTGGTGCTTTCTAAGGCCG 60.605 55.000 0.00 0.00 0.00 6.13
86 87 1.002624 TGGTGCTTTCTAAGGCCGG 60.003 57.895 0.00 0.00 0.00 6.13
87 88 1.002502 GGTGCTTTCTAAGGCCGGT 60.003 57.895 1.90 0.00 0.00 5.28
88 89 0.251073 GGTGCTTTCTAAGGCCGGTA 59.749 55.000 1.90 0.00 0.00 4.02
89 90 1.134189 GGTGCTTTCTAAGGCCGGTAT 60.134 52.381 1.90 0.00 0.00 2.73
90 91 2.640184 GTGCTTTCTAAGGCCGGTATT 58.360 47.619 1.90 0.16 0.00 1.89
91 92 2.354821 GTGCTTTCTAAGGCCGGTATTG 59.645 50.000 1.90 0.00 0.00 1.90
92 93 2.026636 TGCTTTCTAAGGCCGGTATTGT 60.027 45.455 1.90 0.00 0.00 2.71
93 94 3.198200 TGCTTTCTAAGGCCGGTATTGTA 59.802 43.478 1.90 0.00 0.00 2.41
94 95 4.141574 TGCTTTCTAAGGCCGGTATTGTAT 60.142 41.667 1.90 0.00 0.00 2.29
95 96 4.213482 GCTTTCTAAGGCCGGTATTGTATG 59.787 45.833 1.90 0.00 0.00 2.39
96 97 3.396260 TCTAAGGCCGGTATTGTATGC 57.604 47.619 1.90 0.00 0.00 3.14
97 98 2.038033 TCTAAGGCCGGTATTGTATGCC 59.962 50.000 1.90 0.00 42.48 4.40
102 103 2.943653 GGTATTGTATGCCGGCGC 59.056 61.111 23.90 15.15 0.00 6.53
103 104 1.597027 GGTATTGTATGCCGGCGCT 60.597 57.895 23.90 14.61 35.36 5.92
104 105 1.569493 GTATTGTATGCCGGCGCTG 59.431 57.895 23.90 9.96 35.36 5.18
105 106 1.596752 TATTGTATGCCGGCGCTGG 60.597 57.895 31.57 31.57 35.36 4.85
122 123 3.896133 GCATGGTGCCGGCATGAG 61.896 66.667 35.23 22.88 37.42 2.90
123 124 2.124612 CATGGTGCCGGCATGAGA 60.125 61.111 35.23 17.09 0.00 3.27
124 125 2.124570 ATGGTGCCGGCATGAGAC 60.125 61.111 35.23 19.50 0.00 3.36
125 126 2.970379 ATGGTGCCGGCATGAGACA 61.970 57.895 35.23 24.88 0.00 3.41
126 127 2.124570 GGTGCCGGCATGAGACAT 60.125 61.111 35.23 0.00 0.00 3.06
127 128 2.475466 GGTGCCGGCATGAGACATG 61.475 63.158 35.23 7.29 0.00 3.21
128 129 1.450134 GTGCCGGCATGAGACATGA 60.450 57.895 35.23 0.86 0.00 3.07
129 130 1.026182 GTGCCGGCATGAGACATGAA 61.026 55.000 35.23 0.19 0.00 2.57
130 131 1.026182 TGCCGGCATGAGACATGAAC 61.026 55.000 29.03 6.41 0.00 3.18
131 132 2.009108 CCGGCATGAGACATGAACG 58.991 57.895 14.65 15.54 0.00 3.95
132 133 1.349627 CGGCATGAGACATGAACGC 59.650 57.895 14.65 0.00 0.00 4.84
133 134 1.086067 CGGCATGAGACATGAACGCT 61.086 55.000 14.65 0.00 0.00 5.07
134 135 0.376152 GGCATGAGACATGAACGCTG 59.624 55.000 14.65 0.00 0.00 5.18
135 136 0.376152 GCATGAGACATGAACGCTGG 59.624 55.000 14.65 0.00 0.00 4.85
136 137 0.376152 CATGAGACATGAACGCTGGC 59.624 55.000 0.00 0.00 0.00 4.85
137 138 0.036105 ATGAGACATGAACGCTGGCA 60.036 50.000 0.00 0.00 0.00 4.92
138 139 0.036105 TGAGACATGAACGCTGGCAT 60.036 50.000 0.00 0.00 0.00 4.40
139 140 0.376152 GAGACATGAACGCTGGCATG 59.624 55.000 0.00 0.00 45.56 4.06
140 141 0.036105 AGACATGAACGCTGGCATGA 60.036 50.000 13.99 0.00 43.43 3.07
141 142 1.019673 GACATGAACGCTGGCATGAT 58.980 50.000 13.99 2.16 43.43 2.45
142 143 1.003116 GACATGAACGCTGGCATGATC 60.003 52.381 13.99 0.00 43.43 2.92
143 144 0.041576 CATGAACGCTGGCATGATCG 60.042 55.000 0.00 0.00 43.43 3.69
144 145 0.179076 ATGAACGCTGGCATGATCGA 60.179 50.000 0.00 0.00 0.00 3.59
145 146 1.083806 TGAACGCTGGCATGATCGAC 61.084 55.000 0.00 0.00 0.00 4.20
146 147 1.766143 GAACGCTGGCATGATCGACC 61.766 60.000 0.00 0.00 0.00 4.79
147 148 3.333189 CGCTGGCATGATCGACCG 61.333 66.667 0.00 0.00 0.00 4.79
148 149 3.643978 GCTGGCATGATCGACCGC 61.644 66.667 0.00 0.00 0.00 5.68
149 150 3.333189 CTGGCATGATCGACCGCG 61.333 66.667 0.00 0.00 39.35 6.46
150 151 4.889856 TGGCATGATCGACCGCGG 62.890 66.667 26.86 26.86 38.28 6.46
156 157 4.832608 GATCGACCGCGGGCCTTT 62.833 66.667 31.76 13.07 38.28 3.11
157 158 4.404098 ATCGACCGCGGGCCTTTT 62.404 61.111 31.76 6.78 38.28 2.27
158 159 3.912745 ATCGACCGCGGGCCTTTTT 62.913 57.895 31.76 5.85 38.28 1.94
197 198 4.929198 CATGAAATGGATCGGCGC 57.071 55.556 0.00 0.00 41.79 6.53
198 199 1.082561 CATGAAATGGATCGGCGCG 60.083 57.895 0.00 0.00 41.79 6.86
199 200 1.523711 ATGAAATGGATCGGCGCGT 60.524 52.632 8.43 0.00 0.00 6.01
200 201 1.095228 ATGAAATGGATCGGCGCGTT 61.095 50.000 8.43 0.00 0.00 4.84
201 202 1.297598 GAAATGGATCGGCGCGTTG 60.298 57.895 8.43 0.00 0.00 4.10
202 203 2.646799 GAAATGGATCGGCGCGTTGG 62.647 60.000 8.43 0.00 0.00 3.77
220 221 2.049618 GCGCATTGCCGACCAAAA 60.050 55.556 0.30 0.00 36.92 2.44
221 222 1.445926 GCGCATTGCCGACCAAAAT 60.446 52.632 0.30 0.00 36.92 1.82
222 223 0.179150 GCGCATTGCCGACCAAAATA 60.179 50.000 0.30 0.00 36.92 1.40
223 224 1.544686 CGCATTGCCGACCAAAATAC 58.455 50.000 2.41 0.00 36.92 1.89
224 225 1.135546 CGCATTGCCGACCAAAATACA 60.136 47.619 2.41 0.00 36.92 2.29
225 226 2.669670 CGCATTGCCGACCAAAATACAA 60.670 45.455 2.41 0.00 36.92 2.41
226 227 3.321497 GCATTGCCGACCAAAATACAAA 58.679 40.909 0.00 0.00 36.92 2.83
227 228 3.743396 GCATTGCCGACCAAAATACAAAA 59.257 39.130 0.00 0.00 36.92 2.44
228 229 4.376920 GCATTGCCGACCAAAATACAAAAC 60.377 41.667 0.00 0.00 36.92 2.43
229 230 4.657436 TTGCCGACCAAAATACAAAACT 57.343 36.364 0.00 0.00 0.00 2.66
230 231 3.971150 TGCCGACCAAAATACAAAACTG 58.029 40.909 0.00 0.00 0.00 3.16
231 232 3.632604 TGCCGACCAAAATACAAAACTGA 59.367 39.130 0.00 0.00 0.00 3.41
232 233 4.098044 TGCCGACCAAAATACAAAACTGAA 59.902 37.500 0.00 0.00 0.00 3.02
233 234 4.443063 GCCGACCAAAATACAAAACTGAAC 59.557 41.667 0.00 0.00 0.00 3.18
234 235 5.583495 CCGACCAAAATACAAAACTGAACA 58.417 37.500 0.00 0.00 0.00 3.18
235 236 5.685511 CCGACCAAAATACAAAACTGAACAG 59.314 40.000 0.00 0.00 0.00 3.16
236 237 6.459024 CCGACCAAAATACAAAACTGAACAGA 60.459 38.462 8.87 0.00 0.00 3.41
237 238 6.413818 CGACCAAAATACAAAACTGAACAGAC 59.586 38.462 8.87 0.00 0.00 3.51
238 239 6.262601 ACCAAAATACAAAACTGAACAGACG 58.737 36.000 8.87 0.00 0.00 4.18
239 240 5.685511 CCAAAATACAAAACTGAACAGACGG 59.314 40.000 8.87 0.00 0.00 4.79
240 241 4.483476 AATACAAAACTGAACAGACGGC 57.517 40.909 8.87 0.00 0.00 5.68
241 242 0.655733 ACAAAACTGAACAGACGGCG 59.344 50.000 4.80 4.80 0.00 6.46
242 243 0.041312 CAAAACTGAACAGACGGCGG 60.041 55.000 13.24 0.00 0.00 6.13
243 244 0.179067 AAAACTGAACAGACGGCGGA 60.179 50.000 13.24 0.00 0.00 5.54
244 245 0.878961 AAACTGAACAGACGGCGGAC 60.879 55.000 13.24 4.88 0.00 4.79
271 272 2.113910 CGACCCAAACGGACAAAAAG 57.886 50.000 0.00 0.00 34.64 2.27
272 273 1.847818 GACCCAAACGGACAAAAAGC 58.152 50.000 0.00 0.00 34.64 3.51
273 274 0.101579 ACCCAAACGGACAAAAAGCG 59.898 50.000 0.00 0.00 34.64 4.68
274 275 0.596341 CCCAAACGGACAAAAAGCGG 60.596 55.000 0.00 0.00 0.00 5.52
275 276 0.382515 CCAAACGGACAAAAAGCGGA 59.617 50.000 0.00 0.00 0.00 5.54
276 277 1.472990 CAAACGGACAAAAAGCGGAC 58.527 50.000 0.00 0.00 0.00 4.79
277 278 1.096416 AAACGGACAAAAAGCGGACA 58.904 45.000 0.00 0.00 0.00 4.02
278 279 1.096416 AACGGACAAAAAGCGGACAA 58.904 45.000 0.00 0.00 0.00 3.18
279 280 1.096416 ACGGACAAAAAGCGGACAAA 58.904 45.000 0.00 0.00 0.00 2.83
280 281 1.679153 ACGGACAAAAAGCGGACAAAT 59.321 42.857 0.00 0.00 0.00 2.32
281 282 2.050691 CGGACAAAAAGCGGACAAATG 58.949 47.619 0.00 0.00 0.00 2.32
282 283 1.792367 GGACAAAAAGCGGACAAATGC 59.208 47.619 0.00 0.00 0.00 3.56
283 284 1.451651 GACAAAAAGCGGACAAATGCG 59.548 47.619 0.00 0.00 43.57 4.73
289 290 3.118454 CGGACAAATGCGCCGTCT 61.118 61.111 4.18 0.00 40.17 4.18
290 291 2.480555 GGACAAATGCGCCGTCTG 59.519 61.111 4.18 0.00 0.00 3.51
291 292 2.202349 GACAAATGCGCCGTCTGC 60.202 61.111 4.18 0.00 0.00 4.26
292 293 2.669569 ACAAATGCGCCGTCTGCT 60.670 55.556 4.18 0.00 38.05 4.24
293 294 2.187599 GACAAATGCGCCGTCTGCTT 62.188 55.000 4.18 0.00 38.05 3.91
294 295 1.798725 CAAATGCGCCGTCTGCTTG 60.799 57.895 4.18 0.00 38.05 4.01
295 296 2.981560 AAATGCGCCGTCTGCTTGG 61.982 57.895 4.18 0.00 38.05 3.61
313 314 3.739077 GGTCGCCCCATTGAAATTG 57.261 52.632 0.00 0.00 0.00 2.32
314 315 0.460109 GGTCGCCCCATTGAAATTGC 60.460 55.000 0.00 0.00 0.00 3.56
315 316 0.532115 GTCGCCCCATTGAAATTGCT 59.468 50.000 0.00 0.00 0.00 3.91
316 317 0.817013 TCGCCCCATTGAAATTGCTC 59.183 50.000 0.00 0.00 0.00 4.26
356 357 3.050275 GTGGTTGAGCGGCTCACC 61.050 66.667 30.89 29.77 40.46 4.02
379 380 2.859165 TCTCGGGCACATTTCTTTCT 57.141 45.000 0.00 0.00 0.00 2.52
381 382 4.280436 TCTCGGGCACATTTCTTTCTTA 57.720 40.909 0.00 0.00 0.00 2.10
384 385 2.159572 CGGGCACATTTCTTTCTTACGG 60.160 50.000 0.00 0.00 0.00 4.02
385 386 3.078837 GGGCACATTTCTTTCTTACGGA 58.921 45.455 0.00 0.00 0.00 4.69
507 527 1.081376 CGTCGGAGAGTGCGAAAGT 60.081 57.895 0.00 0.00 42.99 2.66
668 724 0.909610 TCCCTCTCCGCACTTCCATT 60.910 55.000 0.00 0.00 0.00 3.16
678 734 1.202348 GCACTTCCATTTTTCCTCCCG 59.798 52.381 0.00 0.00 0.00 5.14
721 777 1.481363 CCCTTTCTCCTCTACCGTTCC 59.519 57.143 0.00 0.00 0.00 3.62
724 780 0.682209 TTCTCCTCTACCGTTCCCCG 60.682 60.000 0.00 0.00 0.00 5.73
727 783 3.846430 CTCTACCGTTCCCCGCCC 61.846 72.222 0.00 0.00 34.38 6.13
742 798 3.391382 CCCGAAGCCTTCCTCCGT 61.391 66.667 0.00 0.00 0.00 4.69
743 799 2.663196 CCGAAGCCTTCCTCCGTT 59.337 61.111 0.00 0.00 0.00 4.44
781 841 1.603236 CTTCTCCTGCTCCGTCTGCT 61.603 60.000 0.00 0.00 0.00 4.24
853 922 1.822581 GCGGTGTTTGTCTGTTTGTC 58.177 50.000 0.00 0.00 0.00 3.18
854 923 1.400494 GCGGTGTTTGTCTGTTTGTCT 59.600 47.619 0.00 0.00 0.00 3.41
855 924 2.791158 GCGGTGTTTGTCTGTTTGTCTG 60.791 50.000 0.00 0.00 0.00 3.51
856 925 2.418628 CGGTGTTTGTCTGTTTGTCTGT 59.581 45.455 0.00 0.00 0.00 3.41
857 926 3.485216 CGGTGTTTGTCTGTTTGTCTGTC 60.485 47.826 0.00 0.00 0.00 3.51
858 927 3.689649 GGTGTTTGTCTGTTTGTCTGTCT 59.310 43.478 0.00 0.00 0.00 3.41
859 928 4.437390 GGTGTTTGTCTGTTTGTCTGTCTG 60.437 45.833 0.00 0.00 0.00 3.51
860 929 4.154195 GTGTTTGTCTGTTTGTCTGTCTGT 59.846 41.667 0.00 0.00 0.00 3.41
864 933 0.041839 CTGTTTGTCTGTCTGTGCGC 60.042 55.000 0.00 0.00 0.00 6.09
900 973 2.358737 CCTTGGTGTCTGTCGGGC 60.359 66.667 0.00 0.00 0.00 6.13
958 1031 2.123640 GGGAGACCGAGGAGGAGG 60.124 72.222 0.00 0.00 45.00 4.30
959 1032 2.835895 GGAGACCGAGGAGGAGGC 60.836 72.222 0.00 0.00 45.00 4.70
960 1033 2.043852 GAGACCGAGGAGGAGGCA 60.044 66.667 0.00 0.00 45.00 4.75
961 1034 1.682684 GAGACCGAGGAGGAGGCAA 60.683 63.158 0.00 0.00 45.00 4.52
962 1035 1.229209 AGACCGAGGAGGAGGCAAA 60.229 57.895 0.00 0.00 45.00 3.68
963 1036 1.219393 GACCGAGGAGGAGGCAAAG 59.781 63.158 0.00 0.00 45.00 2.77
967 1040 1.925972 GAGGAGGAGGCAAAGGGGT 60.926 63.158 0.00 0.00 0.00 4.95
978 1061 0.038310 CAAAGGGGTGGAGGAAGGAC 59.962 60.000 0.00 0.00 0.00 3.85
987 1070 0.249676 GGAGGAAGGACCCGTTTCTC 59.750 60.000 0.00 0.00 40.05 2.87
1122 1205 1.372087 CCGCCTACTCCGTCTACGTT 61.372 60.000 0.00 0.00 37.74 3.99
1131 1214 3.484547 GTCTACGTTTGCGGCGGG 61.485 66.667 9.78 0.00 43.45 6.13
1169 1252 3.071206 TGCGCACCTCTCCTCCTC 61.071 66.667 5.66 0.00 0.00 3.71
1277 1370 0.804989 GTCGGATTTCCAGGCTGTTG 59.195 55.000 14.43 0.00 35.14 3.33
1279 1372 1.202879 TCGGATTTCCAGGCTGTTGTT 60.203 47.619 14.43 0.00 35.14 2.83
1281 1374 2.351738 CGGATTTCCAGGCTGTTGTTTC 60.352 50.000 14.43 3.69 35.14 2.78
1338 1436 6.605194 GCCTTGGATATTCCTCTTTCTTTTCT 59.395 38.462 0.00 0.00 37.46 2.52
1380 1478 4.962362 GGTGGAGTGGGGAATTGATTAATT 59.038 41.667 0.00 0.00 39.16 1.40
1382 1480 6.265422 GGTGGAGTGGGGAATTGATTAATTAG 59.735 42.308 0.00 0.00 36.66 1.73
1387 1485 6.547510 AGTGGGGAATTGATTAATTAGCACTC 59.452 38.462 0.00 0.00 36.66 3.51
1389 1487 5.833131 GGGGAATTGATTAATTAGCACTCCA 59.167 40.000 0.00 0.00 36.66 3.86
1390 1488 6.239036 GGGGAATTGATTAATTAGCACTCCAC 60.239 42.308 0.00 9.78 36.66 4.02
1392 1490 6.377327 AATTGATTAATTAGCACTCCACGG 57.623 37.500 0.00 0.00 34.81 4.94
1428 1540 6.370442 CAGTCAATCCATGCATTTTTGTCATT 59.630 34.615 0.00 0.00 0.00 2.57
1477 1594 3.873952 GCTGCGAGGAATAGTTTGATTCT 59.126 43.478 0.00 0.00 36.30 2.40
1640 1783 6.916360 AGGTTCATTTTCATTTCAGGCTAA 57.084 33.333 0.00 0.00 0.00 3.09
1652 2172 4.783560 TTCAGGCTAATTTACCCTACCC 57.216 45.455 0.00 0.00 0.00 3.69
1696 2216 6.560253 TTTAGCCTTCAAATGTCTGAGTTC 57.440 37.500 0.00 0.00 0.00 3.01
1745 2267 5.124617 CACCTTCTTTCTTAGAAAGGATGCC 59.875 44.000 27.89 0.00 42.19 4.40
1747 2269 5.124617 CCTTCTTTCTTAGAAAGGATGCCAC 59.875 44.000 27.89 0.00 42.19 5.01
1748 2270 4.253685 TCTTTCTTAGAAAGGATGCCACG 58.746 43.478 27.89 6.66 0.00 4.94
1749 2271 3.973206 TTCTTAGAAAGGATGCCACGA 57.027 42.857 0.00 0.00 0.00 4.35
1750 2272 3.526931 TCTTAGAAAGGATGCCACGAG 57.473 47.619 0.00 0.00 0.00 4.18
1751 2273 1.936547 CTTAGAAAGGATGCCACGAGC 59.063 52.381 0.00 0.00 44.14 5.03
1762 2284 4.436998 CACGAGCCCACGACCCTC 62.437 72.222 0.00 0.00 37.03 4.30
1793 2315 2.044793 TGGAGGACCAGGTCTCATTT 57.955 50.000 19.57 0.55 41.77 2.32
1794 2316 2.348472 TGGAGGACCAGGTCTCATTTT 58.652 47.619 19.57 0.00 41.77 1.82
1795 2317 2.040278 TGGAGGACCAGGTCTCATTTTG 59.960 50.000 19.57 0.00 41.77 2.44
1796 2318 2.087646 GAGGACCAGGTCTCATTTTGC 58.912 52.381 19.57 0.00 32.47 3.68
1810 2332 3.940221 TCATTTTGCTTGCTTGCTGTTTT 59.060 34.783 3.47 0.00 0.00 2.43
1930 2452 3.005472 GGTGTAGGAAGCCTTGGTTTTTC 59.995 47.826 0.00 0.00 34.61 2.29
1937 2459 0.396435 GCCTTGGTTTTTCCCTTGGG 59.604 55.000 0.00 0.00 34.77 4.12
1947 2469 4.344359 TTTTCCCTTGGGTGTAATTTGC 57.656 40.909 5.51 0.00 0.00 3.68
1994 2516 6.403309 GGAAGAAGATACGTTGATTTTGACCC 60.403 42.308 0.00 0.00 0.00 4.46
1995 2517 4.630069 AGAAGATACGTTGATTTTGACCCG 59.370 41.667 0.00 0.00 0.00 5.28
1997 2519 1.880271 TACGTTGATTTTGACCCGCA 58.120 45.000 0.00 0.00 0.00 5.69
2061 2584 9.961265 TTTTATATCCAACGTATACTCTGTCTG 57.039 33.333 0.56 0.00 0.00 3.51
2062 2585 3.777465 TCCAACGTATACTCTGTCTGC 57.223 47.619 0.56 0.00 0.00 4.26
2063 2586 3.086282 TCCAACGTATACTCTGTCTGCA 58.914 45.455 0.56 0.00 0.00 4.41
2064 2587 3.128764 TCCAACGTATACTCTGTCTGCAG 59.871 47.826 7.63 7.63 43.87 4.41
2065 2588 2.853731 ACGTATACTCTGTCTGCAGC 57.146 50.000 9.47 4.92 42.29 5.25
2071 2594 1.742140 CTCTGTCTGCAGCCTGCTG 60.742 63.158 18.96 17.71 45.31 4.41
2220 2745 5.163774 GCACATCCTTCTGAGATCTTTGTTC 60.164 44.000 0.00 0.00 0.00 3.18
2221 2746 6.171921 CACATCCTTCTGAGATCTTTGTTCT 58.828 40.000 0.00 0.00 0.00 3.01
2223 2748 7.174599 CACATCCTTCTGAGATCTTTGTTCTTT 59.825 37.037 0.00 0.00 0.00 2.52
2224 2749 8.378565 ACATCCTTCTGAGATCTTTGTTCTTTA 58.621 33.333 0.00 0.00 0.00 1.85
2226 2751 9.972106 ATCCTTCTGAGATCTTTGTTCTTTATT 57.028 29.630 0.00 0.00 0.00 1.40
2291 2821 4.389374 ACGCCCAATTAATCTCTACCATG 58.611 43.478 0.00 0.00 0.00 3.66
2346 2879 2.227388 ACTCTCCTGAAATTTTGCAGCG 59.773 45.455 0.00 0.00 0.00 5.18
2539 3072 3.675225 CAGCCGTGATAATAGTCGGATTG 59.325 47.826 6.63 0.75 44.86 2.67
2559 3092 1.943507 GCAAGAGAGACAAGCACCTCC 60.944 57.143 0.00 0.00 0.00 4.30
2576 3109 2.808543 CCTCCAGTGTCAAAGCTAACAC 59.191 50.000 15.51 15.51 44.83 3.32
2691 3224 5.741011 GACATAAGGTCAAGGTCACCAATA 58.259 41.667 0.00 0.00 46.19 1.90
2713 3246 1.259609 CAGTGTTCCACCCAATGCAT 58.740 50.000 0.00 0.00 34.49 3.96
2714 3247 1.067425 CAGTGTTCCACCCAATGCATG 60.067 52.381 0.00 0.00 34.49 4.06
2715 3248 0.968405 GTGTTCCACCCAATGCATGT 59.032 50.000 0.00 0.00 0.00 3.21
2956 3489 5.528690 GCAGATGCCTCAAGTTCATACAATA 59.471 40.000 0.00 0.00 34.31 1.90
2957 3490 6.038603 GCAGATGCCTCAAGTTCATACAATAA 59.961 38.462 0.00 0.00 34.31 1.40
2958 3491 7.255381 GCAGATGCCTCAAGTTCATACAATAAT 60.255 37.037 0.00 0.00 34.31 1.28
3231 3764 1.118965 TCTCTTGCCACCACGAAGGA 61.119 55.000 5.70 0.00 41.22 3.36
3249 3782 0.464554 GATTCTACCACCAGGCTGCC 60.465 60.000 11.65 11.65 39.06 4.85
3408 3941 3.073274 AGGTACAATTCAAGAGGTGCC 57.927 47.619 0.00 0.00 36.43 5.01
3537 4070 3.181475 GCTATGAAGTACTGCAGCTACCA 60.181 47.826 15.27 9.99 0.00 3.25
3650 4183 2.499197 TGTATCAGAACTTGCGCCAAA 58.501 42.857 4.18 0.00 0.00 3.28
3818 4351 0.304705 AGCGAAACAGACAGCAAACG 59.695 50.000 0.00 0.00 0.00 3.60
4045 4578 7.279536 ACTCAATCAAAGATGTATGTGTAGCAG 59.720 37.037 0.00 0.00 0.00 4.24
4047 4580 7.278646 TCAATCAAAGATGTATGTGTAGCAGAC 59.721 37.037 0.00 0.00 39.59 3.51
4093 4626 6.237942 CGAGTTTGATGATCCTGATTACACAC 60.238 42.308 0.00 0.00 0.00 3.82
4284 4817 1.145819 GGCTGAGAAGCTAGCTGGG 59.854 63.158 20.16 8.03 39.80 4.45
4407 4940 8.959705 AACCTAGAAAATAAATACTTCCTCCG 57.040 34.615 0.00 0.00 0.00 4.63
4408 4941 8.087303 ACCTAGAAAATAAATACTTCCTCCGT 57.913 34.615 0.00 0.00 0.00 4.69
4409 4942 9.205513 ACCTAGAAAATAAATACTTCCTCCGTA 57.794 33.333 0.00 0.00 0.00 4.02
4413 4946 9.955102 AGAAAATAAATACTTCCTCCGTAAACT 57.045 29.630 0.00 0.00 0.00 2.66
4424 4957 8.358895 ACTTCCTCCGTAAACTAATATAAGAGC 58.641 37.037 0.00 0.00 0.00 4.09
4425 4958 7.828508 TCCTCCGTAAACTAATATAAGAGCA 57.171 36.000 0.00 0.00 0.00 4.26
4426 4959 8.418597 TCCTCCGTAAACTAATATAAGAGCAT 57.581 34.615 0.00 0.00 0.00 3.79
4427 4960 8.867097 TCCTCCGTAAACTAATATAAGAGCATT 58.133 33.333 0.00 0.00 0.00 3.56
4428 4961 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
4477 5010 9.727627 AACGTTCTTATATTAGTTTACGGAGAG 57.272 33.333 0.00 0.00 32.54 3.20
4478 5011 9.113838 ACGTTCTTATATTAGTTTACGGAGAGA 57.886 33.333 13.71 0.00 32.54 3.10
4479 5012 9.596677 CGTTCTTATATTAGTTTACGGAGAGAG 57.403 37.037 0.00 0.00 0.00 3.20
4496 5029 8.800332 ACGGAGAGAGTACTTTAGTTAATTTGA 58.200 33.333 0.00 0.00 0.00 2.69
4676 5214 4.461405 CAATTCAGTATTCTGCATAGCGC 58.539 43.478 0.00 0.00 41.10 5.92
5107 6497 4.130118 CCTATAATCTTGCTGTGACACCC 58.870 47.826 2.45 0.00 0.00 4.61
5108 6498 4.141620 CCTATAATCTTGCTGTGACACCCT 60.142 45.833 2.45 0.00 0.00 4.34
5267 6662 2.486203 CCGTGCTTAGTATTGTTTGCCA 59.514 45.455 0.00 0.00 0.00 4.92
5324 6719 2.995939 TGAAGTCACGCTAGAATTGCAG 59.004 45.455 0.00 0.00 0.00 4.41
5374 6769 6.844696 TTTGCTTCTTAATATAGTGCTCGG 57.155 37.500 0.00 0.00 0.00 4.63
5402 6797 3.064931 ACCAGTAGCAGCGTTTAGAAAC 58.935 45.455 0.00 0.00 35.59 2.78
5460 6855 0.616964 TGGTCAGCAGAGCCTGATCT 60.617 55.000 5.81 0.00 42.24 2.75
5466 6861 3.261643 TCAGCAGAGCCTGATCTTTACAA 59.738 43.478 6.40 0.00 36.96 2.41
5526 6922 2.533266 TTCAGACAGCCTGTTCTCAC 57.467 50.000 0.00 0.00 43.38 3.51
5532 6928 1.013005 CAGCCTGTTCTCACGAGCTG 61.013 60.000 0.00 0.00 42.18 4.24
5541 6937 2.004733 TCTCACGAGCTGCATTGATTG 58.995 47.619 1.02 0.00 0.00 2.67
5600 7003 8.701908 AAGTTATGATTGCTCATATCACCATT 57.298 30.769 6.74 0.00 42.51 3.16
5618 7021 3.139565 GGGTGATCCCGACTAGGC 58.860 66.667 0.00 0.00 44.74 3.93
5632 7035 6.042781 TCCCGACTAGGCAGTATATTGAAATT 59.957 38.462 0.00 0.00 39.21 1.82
5691 7094 2.412870 TCAAACTAGCATGTGTCGTGG 58.587 47.619 0.00 0.00 0.00 4.94
5986 7407 0.106894 GGGTAAGCTCGGGGATGAAG 59.893 60.000 0.00 0.00 0.00 3.02
5987 7408 1.120530 GGTAAGCTCGGGGATGAAGA 58.879 55.000 0.00 0.00 0.00 2.87
5988 7409 1.485066 GGTAAGCTCGGGGATGAAGAA 59.515 52.381 0.00 0.00 0.00 2.52
6035 7456 8.591114 AGAACATGGAGATTTGAAGATCAATT 57.409 30.769 0.00 0.00 36.11 2.32
6037 7458 7.713734 ACATGGAGATTTGAAGATCAATTGT 57.286 32.000 5.13 0.00 36.11 2.71
6040 7461 5.105635 TGGAGATTTGAAGATCAATTGTGGC 60.106 40.000 5.13 0.00 36.11 5.01
6041 7462 5.105635 GGAGATTTGAAGATCAATTGTGGCA 60.106 40.000 5.13 0.00 36.11 4.92
6044 7465 4.771590 TTGAAGATCAATTGTGGCAGTC 57.228 40.909 5.13 0.00 30.26 3.51
6320 7750 2.027192 TCGTGAAAATGAGGGGAAGGAG 60.027 50.000 0.00 0.00 0.00 3.69
6325 7755 0.915364 AATGAGGGGAAGGAGACTGC 59.085 55.000 0.00 0.00 42.68 4.40
6330 7760 1.194781 GGGGAAGGAGACTGCACTGA 61.195 60.000 0.00 0.00 40.46 3.41
6380 8472 5.975410 GTGTCATCACTGCTTATACTTCC 57.025 43.478 0.00 0.00 40.98 3.46
6381 8473 5.665459 GTGTCATCACTGCTTATACTTCCT 58.335 41.667 0.00 0.00 40.98 3.36
6382 8474 5.751028 GTGTCATCACTGCTTATACTTCCTC 59.249 44.000 0.00 0.00 40.98 3.71
6383 8475 5.163405 TGTCATCACTGCTTATACTTCCTCC 60.163 44.000 0.00 0.00 0.00 4.30
6384 8476 5.069781 GTCATCACTGCTTATACTTCCTCCT 59.930 44.000 0.00 0.00 0.00 3.69
6385 8477 5.069648 TCATCACTGCTTATACTTCCTCCTG 59.930 44.000 0.00 0.00 0.00 3.86
6386 8478 4.353777 TCACTGCTTATACTTCCTCCTGT 58.646 43.478 0.00 0.00 0.00 4.00
6387 8479 4.402793 TCACTGCTTATACTTCCTCCTGTC 59.597 45.833 0.00 0.00 0.00 3.51
6388 8480 3.707102 ACTGCTTATACTTCCTCCTGTCC 59.293 47.826 0.00 0.00 0.00 4.02
6389 8481 3.964031 CTGCTTATACTTCCTCCTGTCCT 59.036 47.826 0.00 0.00 0.00 3.85
6390 8482 4.362677 TGCTTATACTTCCTCCTGTCCTT 58.637 43.478 0.00 0.00 0.00 3.36
6391 8483 4.783227 TGCTTATACTTCCTCCTGTCCTTT 59.217 41.667 0.00 0.00 0.00 3.11
6392 8484 5.250774 TGCTTATACTTCCTCCTGTCCTTTT 59.749 40.000 0.00 0.00 0.00 2.27
6393 8485 6.181190 GCTTATACTTCCTCCTGTCCTTTTT 58.819 40.000 0.00 0.00 0.00 1.94
6394 8486 7.037873 TGCTTATACTTCCTCCTGTCCTTTTTA 60.038 37.037 0.00 0.00 0.00 1.52
6395 8487 7.280428 GCTTATACTTCCTCCTGTCCTTTTTAC 59.720 40.741 0.00 0.00 0.00 2.01
6396 8488 6.954352 ATACTTCCTCCTGTCCTTTTTACT 57.046 37.500 0.00 0.00 0.00 2.24
6397 8489 5.230323 ACTTCCTCCTGTCCTTTTTACTC 57.770 43.478 0.00 0.00 0.00 2.59
6398 8490 4.041815 ACTTCCTCCTGTCCTTTTTACTCC 59.958 45.833 0.00 0.00 0.00 3.85
6399 8491 2.565834 TCCTCCTGTCCTTTTTACTCCG 59.434 50.000 0.00 0.00 0.00 4.63
6400 8492 2.565834 CCTCCTGTCCTTTTTACTCCGA 59.434 50.000 0.00 0.00 0.00 4.55
6401 8493 3.368531 CCTCCTGTCCTTTTTACTCCGAG 60.369 52.174 0.00 0.00 0.00 4.63
6402 8494 3.236896 TCCTGTCCTTTTTACTCCGAGT 58.763 45.455 6.25 6.25 0.00 4.18
6403 8495 4.410099 TCCTGTCCTTTTTACTCCGAGTA 58.590 43.478 4.01 4.01 0.00 2.59
6404 8496 5.021458 TCCTGTCCTTTTTACTCCGAGTAT 58.979 41.667 9.10 0.00 29.64 2.12
6405 8497 5.482878 TCCTGTCCTTTTTACTCCGAGTATT 59.517 40.000 9.10 0.00 29.64 1.89
6406 8498 6.664816 TCCTGTCCTTTTTACTCCGAGTATTA 59.335 38.462 9.10 0.00 29.64 0.98
6407 8499 6.979238 CCTGTCCTTTTTACTCCGAGTATTAG 59.021 42.308 9.10 7.00 29.64 1.73
6408 8500 7.147949 CCTGTCCTTTTTACTCCGAGTATTAGA 60.148 40.741 9.10 0.78 29.64 2.10
6409 8501 8.302515 TGTCCTTTTTACTCCGAGTATTAGAT 57.697 34.615 9.10 0.00 29.64 1.98
6410 8502 8.755977 TGTCCTTTTTACTCCGAGTATTAGATT 58.244 33.333 9.10 0.00 29.64 2.40
6411 8503 9.597170 GTCCTTTTTACTCCGAGTATTAGATTT 57.403 33.333 9.10 0.00 29.64 2.17
6412 8504 9.595823 TCCTTTTTACTCCGAGTATTAGATTTG 57.404 33.333 9.10 0.00 29.64 2.32
6413 8505 8.336080 CCTTTTTACTCCGAGTATTAGATTTGC 58.664 37.037 9.10 0.00 29.64 3.68
6414 8506 8.780846 TTTTTACTCCGAGTATTAGATTTGCA 57.219 30.769 9.10 0.00 29.64 4.08
6415 8507 8.958119 TTTTACTCCGAGTATTAGATTTGCAT 57.042 30.769 9.10 0.00 29.64 3.96
6416 8508 8.589335 TTTACTCCGAGTATTAGATTTGCATC 57.411 34.615 9.10 0.00 29.64 3.91
6417 8509 6.161855 ACTCCGAGTATTAGATTTGCATCA 57.838 37.500 0.00 0.00 0.00 3.07
6418 8510 6.582636 ACTCCGAGTATTAGATTTGCATCAA 58.417 36.000 0.00 0.00 0.00 2.57
6419 8511 6.703607 ACTCCGAGTATTAGATTTGCATCAAG 59.296 38.462 0.00 0.00 0.00 3.02
6420 8512 6.582636 TCCGAGTATTAGATTTGCATCAAGT 58.417 36.000 0.00 0.00 0.00 3.16
6421 8513 6.701841 TCCGAGTATTAGATTTGCATCAAGTC 59.298 38.462 0.00 0.00 31.63 3.01
6422 8514 6.479990 CCGAGTATTAGATTTGCATCAAGTCA 59.520 38.462 0.00 0.00 33.48 3.41
6423 8515 7.011389 CCGAGTATTAGATTTGCATCAAGTCAA 59.989 37.037 0.00 0.00 33.48 3.18
6424 8516 8.390354 CGAGTATTAGATTTGCATCAAGTCAAA 58.610 33.333 0.00 0.00 33.48 2.69
6425 8517 9.495754 GAGTATTAGATTTGCATCAAGTCAAAC 57.504 33.333 0.00 0.00 35.34 2.93
6426 8518 9.236006 AGTATTAGATTTGCATCAAGTCAAACT 57.764 29.630 0.00 0.00 35.34 2.66
6427 8519 9.846248 GTATTAGATTTGCATCAAGTCAAACTT 57.154 29.630 0.00 0.00 39.39 2.66
6429 8521 8.578308 TTAGATTTGCATCAAGTCAAACTTTG 57.422 30.769 0.00 0.00 36.03 2.77
6430 8522 5.464389 AGATTTGCATCAAGTCAAACTTTGC 59.536 36.000 8.76 8.76 40.51 3.68
6431 8523 3.797451 TGCATCAAGTCAAACTTTGCA 57.203 38.095 12.71 12.71 44.77 4.08
6432 8524 4.120792 TGCATCAAGTCAAACTTTGCAA 57.879 36.364 13.84 0.00 44.31 4.08
6433 8525 4.502016 TGCATCAAGTCAAACTTTGCAAA 58.498 34.783 12.14 12.14 44.31 3.68
6434 8526 4.567558 TGCATCAAGTCAAACTTTGCAAAG 59.432 37.500 32.53 32.53 44.31 2.77
6533 8625 9.970395 TGATGAATCTAACAATATTGATTTGGC 57.030 29.630 22.16 6.26 30.41 4.52
6534 8626 9.970395 GATGAATCTAACAATATTGATTTGGCA 57.030 29.630 22.16 11.10 30.41 4.92
6544 8636 9.669887 ACAATATTGATTTGGCATTGTAAATGT 57.330 25.926 22.16 0.00 37.89 2.71
6547 8639 9.887629 ATATTGATTTGGCATTGTAAATGTTGA 57.112 25.926 0.00 0.00 0.00 3.18
6548 8640 8.795842 ATTGATTTGGCATTGTAAATGTTGAT 57.204 26.923 0.00 0.00 0.00 2.57
6549 8641 9.887629 ATTGATTTGGCATTGTAAATGTTGATA 57.112 25.926 0.00 0.00 0.00 2.15
6550 8642 9.716531 TTGATTTGGCATTGTAAATGTTGATAA 57.283 25.926 0.00 0.00 0.00 1.75
6551 8643 9.887629 TGATTTGGCATTGTAAATGTTGATAAT 57.112 25.926 0.00 0.00 0.00 1.28
6585 8677 7.992754 AAGTTTGATCAAAGTAGAGATGCTT 57.007 32.000 25.11 16.04 33.87 3.91
6586 8678 7.992754 AGTTTGATCAAAGTAGAGATGCTTT 57.007 32.000 23.95 0.00 35.55 3.51
6595 8687 7.710676 AAAGTAGAGATGCTTTGACTCTAGA 57.289 36.000 0.00 0.00 41.73 2.43
6596 8688 6.693315 AGTAGAGATGCTTTGACTCTAGAC 57.307 41.667 0.00 0.00 41.73 2.59
6597 8689 6.184068 AGTAGAGATGCTTTGACTCTAGACA 58.816 40.000 0.00 0.00 41.73 3.41
6598 8690 5.991933 AGAGATGCTTTGACTCTAGACAA 57.008 39.130 0.00 0.00 38.91 3.18
6599 8691 6.352016 AGAGATGCTTTGACTCTAGACAAA 57.648 37.500 7.93 7.93 38.91 2.83
6600 8692 6.763355 AGAGATGCTTTGACTCTAGACAAAA 58.237 36.000 9.16 1.31 38.68 2.44
6601 8693 6.648725 AGAGATGCTTTGACTCTAGACAAAAC 59.351 38.462 9.16 6.25 38.68 2.43
6602 8694 6.529220 AGATGCTTTGACTCTAGACAAAACT 58.471 36.000 9.16 5.12 38.68 2.66
6603 8695 6.995091 AGATGCTTTGACTCTAGACAAAACTT 59.005 34.615 9.16 4.47 38.68 2.66
6604 8696 8.150945 AGATGCTTTGACTCTAGACAAAACTTA 58.849 33.333 9.16 0.00 38.68 2.24
6605 8697 8.854614 ATGCTTTGACTCTAGACAAAACTTAT 57.145 30.769 9.16 1.45 38.68 1.73
6606 8698 9.944376 ATGCTTTGACTCTAGACAAAACTTATA 57.056 29.630 9.16 0.00 38.68 0.98
6607 8699 9.204570 TGCTTTGACTCTAGACAAAACTTATAC 57.795 33.333 9.16 0.00 38.68 1.47
6608 8700 8.373992 GCTTTGACTCTAGACAAAACTTATACG 58.626 37.037 9.16 0.00 38.68 3.06
6609 8701 7.807687 TTGACTCTAGACAAAACTTATACGC 57.192 36.000 0.00 0.00 0.00 4.42
6610 8702 6.916440 TGACTCTAGACAAAACTTATACGCA 58.084 36.000 0.00 0.00 0.00 5.24
6611 8703 7.027760 TGACTCTAGACAAAACTTATACGCAG 58.972 38.462 0.00 0.00 0.00 5.18
6612 8704 7.094506 TGACTCTAGACAAAACTTATACGCAGA 60.095 37.037 0.00 0.00 0.00 4.26
6613 8705 7.028361 ACTCTAGACAAAACTTATACGCAGAC 58.972 38.462 0.00 0.00 0.00 3.51
6614 8706 6.916440 TCTAGACAAAACTTATACGCAGACA 58.084 36.000 0.00 0.00 0.00 3.41
6615 8707 7.372714 TCTAGACAAAACTTATACGCAGACAA 58.627 34.615 0.00 0.00 0.00 3.18
6616 8708 6.854496 AGACAAAACTTATACGCAGACAAA 57.146 33.333 0.00 0.00 0.00 2.83
6617 8709 7.254227 AGACAAAACTTATACGCAGACAAAA 57.746 32.000 0.00 0.00 0.00 2.44
6618 8710 7.699566 AGACAAAACTTATACGCAGACAAAAA 58.300 30.769 0.00 0.00 0.00 1.94
6619 8711 8.349983 AGACAAAACTTATACGCAGACAAAAAT 58.650 29.630 0.00 0.00 0.00 1.82
6620 8712 8.280909 ACAAAACTTATACGCAGACAAAAATG 57.719 30.769 0.00 0.00 0.00 2.32
6621 8713 8.132362 ACAAAACTTATACGCAGACAAAAATGA 58.868 29.630 0.00 0.00 0.00 2.57
6622 8714 8.417176 CAAAACTTATACGCAGACAAAAATGAC 58.583 33.333 0.00 0.00 0.00 3.06
6623 8715 5.854157 ACTTATACGCAGACAAAAATGACG 58.146 37.500 0.00 0.00 0.00 4.35
6624 8716 3.740044 ATACGCAGACAAAAATGACGG 57.260 42.857 0.00 0.00 0.00 4.79
6625 8717 0.591170 ACGCAGACAAAAATGACGGG 59.409 50.000 0.00 0.00 0.00 5.28
6626 8718 0.871722 CGCAGACAAAAATGACGGGA 59.128 50.000 0.00 0.00 0.00 5.14
6627 8719 1.135972 CGCAGACAAAAATGACGGGAG 60.136 52.381 0.00 0.00 0.00 4.30
6628 8720 1.200020 GCAGACAAAAATGACGGGAGG 59.800 52.381 0.00 0.00 0.00 4.30
6629 8721 2.778299 CAGACAAAAATGACGGGAGGA 58.222 47.619 0.00 0.00 0.00 3.71
6630 8722 3.146066 CAGACAAAAATGACGGGAGGAA 58.854 45.455 0.00 0.00 0.00 3.36
6631 8723 3.189287 CAGACAAAAATGACGGGAGGAAG 59.811 47.826 0.00 0.00 0.00 3.46
6657 8749 0.329261 TGCCAATCAAGAGACCAGGG 59.671 55.000 0.00 0.00 0.00 4.45
6658 8750 0.394899 GCCAATCAAGAGACCAGGGG 60.395 60.000 0.00 0.00 0.00 4.79
6670 8762 2.672651 CAGGGGCGTGCACATGAA 60.673 61.111 18.64 0.00 32.21 2.57
6672 8764 3.747976 GGGGCGTGCACATGAACC 61.748 66.667 18.64 10.38 0.00 3.62
6673 8765 3.747976 GGGCGTGCACATGAACCC 61.748 66.667 18.64 14.55 0.00 4.11
6675 8767 2.560119 GGCGTGCACATGAACCCAA 61.560 57.895 18.64 0.00 0.00 4.12
6678 8770 0.667993 CGTGCACATGAACCCAAGTT 59.332 50.000 18.64 0.00 39.54 2.66
6692 8784 6.405278 AACCCAAGTTCTGTTAATTTCAGG 57.595 37.500 9.41 0.00 34.15 3.86
6693 8785 5.701224 ACCCAAGTTCTGTTAATTTCAGGA 58.299 37.500 9.41 0.38 34.15 3.86
6694 8786 6.314917 ACCCAAGTTCTGTTAATTTCAGGAT 58.685 36.000 9.41 0.00 34.15 3.24
6695 8787 7.466804 ACCCAAGTTCTGTTAATTTCAGGATA 58.533 34.615 9.41 0.00 34.15 2.59
6696 8788 8.116026 ACCCAAGTTCTGTTAATTTCAGGATAT 58.884 33.333 9.41 0.00 34.15 1.63
6697 8789 8.971073 CCCAAGTTCTGTTAATTTCAGGATATT 58.029 33.333 9.41 0.00 34.15 1.28
6704 8796 8.966868 TCTGTTAATTTCAGGATATTTTGGTCC 58.033 33.333 9.41 0.00 34.15 4.46
6705 8797 8.073467 TGTTAATTTCAGGATATTTTGGTCCC 57.927 34.615 0.00 0.00 35.00 4.46
6706 8798 7.676043 TGTTAATTTCAGGATATTTTGGTCCCA 59.324 33.333 0.00 0.00 35.00 4.37
6707 8799 6.544928 AATTTCAGGATATTTTGGTCCCAC 57.455 37.500 0.00 0.00 35.00 4.61
6789 11384 3.129287 CACACTTTCAGAAAGCTTGGTGT 59.871 43.478 21.00 15.30 42.27 4.16
6830 11425 7.685481 TGAAGTCTGGAGAGGTAGATAGATAG 58.315 42.308 0.00 0.00 0.00 2.08
6831 11426 7.514473 TGAAGTCTGGAGAGGTAGATAGATAGA 59.486 40.741 0.00 0.00 0.00 1.98
6832 11427 8.463055 AAGTCTGGAGAGGTAGATAGATAGAT 57.537 38.462 0.00 0.00 0.00 1.98
6833 11428 9.569074 AAGTCTGGAGAGGTAGATAGATAGATA 57.431 37.037 0.00 0.00 0.00 1.98
6856 11451 2.966516 CCTACCTAGGACCTGAACCATC 59.033 54.545 17.98 0.00 46.63 3.51
6888 11484 3.746949 GACGCCCTCCCTGATGCAG 62.747 68.421 0.00 0.00 0.00 4.41
6905 11503 2.170187 TGCAGGAAAAAGCATGGTGTTT 59.830 40.909 12.83 12.83 35.51 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.206610 ACACATGCCAGCACACAAAAA 59.793 42.857 0.00 0.00 0.00 1.94
14 15 0.822811 ACACATGCCAGCACACAAAA 59.177 45.000 0.00 0.00 0.00 2.44
15 16 0.102663 CACACATGCCAGCACACAAA 59.897 50.000 0.00 0.00 0.00 2.83
16 17 1.734748 CACACATGCCAGCACACAA 59.265 52.632 0.00 0.00 0.00 3.33
17 18 2.847754 GCACACATGCCAGCACACA 61.848 57.895 0.00 0.00 46.97 3.72
18 19 2.049802 GCACACATGCCAGCACAC 60.050 61.111 0.00 0.00 46.97 3.82
52 53 2.177531 CACAGTTCATGCTGGCGC 59.822 61.111 0.00 0.00 40.59 6.53
53 54 1.968017 ACCACAGTTCATGCTGGCG 60.968 57.895 5.48 0.00 40.59 5.69
54 55 1.582968 CACCACAGTTCATGCTGGC 59.417 57.895 5.48 0.00 40.59 4.85
55 56 0.892358 AGCACCACAGTTCATGCTGG 60.892 55.000 5.48 0.00 46.42 4.85
56 57 2.637521 AGCACCACAGTTCATGCTG 58.362 52.632 2.71 0.00 46.42 4.41
58 59 1.610522 AGAAAGCACCACAGTTCATGC 59.389 47.619 0.00 0.00 38.39 4.06
59 60 4.083110 CCTTAGAAAGCACCACAGTTCATG 60.083 45.833 0.00 0.00 0.00 3.07
60 61 4.074970 CCTTAGAAAGCACCACAGTTCAT 58.925 43.478 0.00 0.00 0.00 2.57
61 62 3.476552 CCTTAGAAAGCACCACAGTTCA 58.523 45.455 0.00 0.00 0.00 3.18
62 63 2.226674 GCCTTAGAAAGCACCACAGTTC 59.773 50.000 0.00 0.00 0.00 3.01
63 64 2.230660 GCCTTAGAAAGCACCACAGTT 58.769 47.619 0.00 0.00 0.00 3.16
64 65 1.545651 GGCCTTAGAAAGCACCACAGT 60.546 52.381 0.00 0.00 0.00 3.55
65 66 1.168714 GGCCTTAGAAAGCACCACAG 58.831 55.000 0.00 0.00 0.00 3.66
66 67 0.605319 CGGCCTTAGAAAGCACCACA 60.605 55.000 0.00 0.00 0.00 4.17
67 68 1.305930 CCGGCCTTAGAAAGCACCAC 61.306 60.000 0.00 0.00 0.00 4.16
68 69 1.002624 CCGGCCTTAGAAAGCACCA 60.003 57.895 0.00 0.00 0.00 4.17
69 70 0.251073 TACCGGCCTTAGAAAGCACC 59.749 55.000 0.00 0.00 0.00 5.01
70 71 2.327200 ATACCGGCCTTAGAAAGCAC 57.673 50.000 0.00 0.00 0.00 4.40
71 72 2.026636 ACAATACCGGCCTTAGAAAGCA 60.027 45.455 0.00 0.00 0.00 3.91
72 73 2.640184 ACAATACCGGCCTTAGAAAGC 58.360 47.619 0.00 0.00 0.00 3.51
73 74 4.213482 GCATACAATACCGGCCTTAGAAAG 59.787 45.833 0.00 0.00 0.00 2.62
74 75 4.131596 GCATACAATACCGGCCTTAGAAA 58.868 43.478 0.00 0.00 0.00 2.52
75 76 3.495453 GGCATACAATACCGGCCTTAGAA 60.495 47.826 0.00 0.00 41.39 2.10
76 77 2.038033 GGCATACAATACCGGCCTTAGA 59.962 50.000 0.00 0.00 41.39 2.10
77 78 2.423577 GGCATACAATACCGGCCTTAG 58.576 52.381 0.00 0.00 41.39 2.18
78 79 1.270412 CGGCATACAATACCGGCCTTA 60.270 52.381 0.00 0.00 43.23 2.69
79 80 0.534203 CGGCATACAATACCGGCCTT 60.534 55.000 0.00 0.00 43.23 4.35
80 81 1.070786 CGGCATACAATACCGGCCT 59.929 57.895 0.00 0.00 43.23 5.19
81 82 3.650369 CGGCATACAATACCGGCC 58.350 61.111 0.00 0.00 43.23 6.13
84 85 2.950172 GCGCCGGCATACAATACCG 61.950 63.158 28.98 6.77 46.50 4.02
85 86 1.597027 AGCGCCGGCATACAATACC 60.597 57.895 28.98 2.17 43.41 2.73
86 87 1.569493 CAGCGCCGGCATACAATAC 59.431 57.895 28.98 4.42 43.41 1.89
87 88 1.596752 CCAGCGCCGGCATACAATA 60.597 57.895 28.98 0.00 43.41 1.90
88 89 2.901840 CCAGCGCCGGCATACAAT 60.902 61.111 28.98 1.24 43.41 2.71
105 106 3.896133 CTCATGCCGGCACCATGC 61.896 66.667 35.50 0.00 44.08 4.06
106 107 2.124612 TCTCATGCCGGCACCATG 60.125 61.111 35.50 26.75 41.03 3.66
107 108 2.124570 GTCTCATGCCGGCACCAT 60.125 61.111 35.50 14.65 0.00 3.55
108 109 2.970379 ATGTCTCATGCCGGCACCA 61.970 57.895 35.50 22.60 0.00 4.17
109 110 2.124570 ATGTCTCATGCCGGCACC 60.125 61.111 35.50 17.52 0.00 5.01
110 111 1.026182 TTCATGTCTCATGCCGGCAC 61.026 55.000 35.50 19.90 0.00 5.01
111 112 1.026182 GTTCATGTCTCATGCCGGCA 61.026 55.000 34.80 34.80 0.00 5.69
112 113 1.723870 GTTCATGTCTCATGCCGGC 59.276 57.895 22.73 22.73 0.00 6.13
113 114 2.009108 CGTTCATGTCTCATGCCGG 58.991 57.895 0.00 0.00 0.00 6.13
114 115 1.086067 AGCGTTCATGTCTCATGCCG 61.086 55.000 13.14 13.14 0.00 5.69
115 116 0.376152 CAGCGTTCATGTCTCATGCC 59.624 55.000 5.03 0.00 0.00 4.40
116 117 0.376152 CCAGCGTTCATGTCTCATGC 59.624 55.000 5.03 0.00 0.00 4.06
117 118 0.376152 GCCAGCGTTCATGTCTCATG 59.624 55.000 3.65 3.65 0.00 3.07
118 119 0.036105 TGCCAGCGTTCATGTCTCAT 60.036 50.000 0.00 0.00 0.00 2.90
119 120 0.036105 ATGCCAGCGTTCATGTCTCA 60.036 50.000 0.00 0.00 0.00 3.27
120 121 0.376152 CATGCCAGCGTTCATGTCTC 59.624 55.000 0.00 0.00 36.30 3.36
121 122 0.036105 TCATGCCAGCGTTCATGTCT 60.036 50.000 12.47 0.00 40.54 3.41
122 123 1.003116 GATCATGCCAGCGTTCATGTC 60.003 52.381 12.47 7.79 40.54 3.06
123 124 1.019673 GATCATGCCAGCGTTCATGT 58.980 50.000 12.47 3.77 40.54 3.21
124 125 0.041576 CGATCATGCCAGCGTTCATG 60.042 55.000 8.25 8.25 40.92 3.07
125 126 0.179076 TCGATCATGCCAGCGTTCAT 60.179 50.000 0.00 0.00 0.00 2.57
126 127 1.083806 GTCGATCATGCCAGCGTTCA 61.084 55.000 0.00 0.00 0.00 3.18
127 128 1.638467 GTCGATCATGCCAGCGTTC 59.362 57.895 0.00 0.00 0.00 3.95
128 129 1.815421 GGTCGATCATGCCAGCGTT 60.815 57.895 0.00 0.00 0.00 4.84
129 130 2.202932 GGTCGATCATGCCAGCGT 60.203 61.111 0.00 0.00 0.00 5.07
130 131 3.333189 CGGTCGATCATGCCAGCG 61.333 66.667 0.00 0.00 0.00 5.18
131 132 3.643978 GCGGTCGATCATGCCAGC 61.644 66.667 0.00 0.00 0.00 4.85
132 133 3.333189 CGCGGTCGATCATGCCAG 61.333 66.667 0.00 0.00 38.10 4.85
133 134 4.889856 CCGCGGTCGATCATGCCA 62.890 66.667 19.50 0.00 38.10 4.92
139 140 4.832608 AAAGGCCCGCGGTCGATC 62.833 66.667 26.12 8.32 38.10 3.69
140 141 3.912745 AAAAAGGCCCGCGGTCGAT 62.913 57.895 26.12 4.46 38.10 3.59
141 142 4.629523 AAAAAGGCCCGCGGTCGA 62.630 61.111 26.12 0.00 38.10 4.20
163 164 8.920665 CCATTTCATGTTCGCATTTAACTTTTA 58.079 29.630 0.00 0.00 35.23 1.52
164 165 7.655328 TCCATTTCATGTTCGCATTTAACTTTT 59.345 29.630 0.00 0.00 35.23 2.27
165 166 7.151308 TCCATTTCATGTTCGCATTTAACTTT 58.849 30.769 0.00 0.00 35.23 2.66
166 167 6.686630 TCCATTTCATGTTCGCATTTAACTT 58.313 32.000 0.00 0.00 35.23 2.66
167 168 6.266168 TCCATTTCATGTTCGCATTTAACT 57.734 33.333 0.00 0.00 35.23 2.24
168 169 6.075415 CGATCCATTTCATGTTCGCATTTAAC 60.075 38.462 0.00 0.00 35.23 2.01
169 170 5.970612 CGATCCATTTCATGTTCGCATTTAA 59.029 36.000 0.00 0.00 35.23 1.52
170 171 5.505489 CCGATCCATTTCATGTTCGCATTTA 60.505 40.000 0.00 0.00 35.23 1.40
171 172 4.353737 CGATCCATTTCATGTTCGCATTT 58.646 39.130 0.00 0.00 35.23 2.32
172 173 3.243168 CCGATCCATTTCATGTTCGCATT 60.243 43.478 0.00 0.00 35.23 3.56
173 174 2.291465 CCGATCCATTTCATGTTCGCAT 59.709 45.455 0.00 0.00 38.60 4.73
174 175 1.670295 CCGATCCATTTCATGTTCGCA 59.330 47.619 0.00 0.00 34.59 5.10
175 176 1.597937 GCCGATCCATTTCATGTTCGC 60.598 52.381 0.00 0.00 34.59 4.70
176 177 1.333169 CGCCGATCCATTTCATGTTCG 60.333 52.381 0.00 0.00 35.24 3.95
177 178 1.597937 GCGCCGATCCATTTCATGTTC 60.598 52.381 0.00 0.00 0.00 3.18
178 179 0.381801 GCGCCGATCCATTTCATGTT 59.618 50.000 0.00 0.00 0.00 2.71
179 180 1.775039 CGCGCCGATCCATTTCATGT 61.775 55.000 0.00 0.00 0.00 3.21
180 181 1.082561 CGCGCCGATCCATTTCATG 60.083 57.895 0.00 0.00 0.00 3.07
181 182 1.095228 AACGCGCCGATCCATTTCAT 61.095 50.000 5.73 0.00 0.00 2.57
182 183 1.743623 AACGCGCCGATCCATTTCA 60.744 52.632 5.73 0.00 0.00 2.69
183 184 1.297598 CAACGCGCCGATCCATTTC 60.298 57.895 5.73 0.00 0.00 2.17
184 185 2.760159 CCAACGCGCCGATCCATTT 61.760 57.895 5.73 0.00 0.00 2.32
185 186 3.202001 CCAACGCGCCGATCCATT 61.202 61.111 5.73 0.00 0.00 3.16
203 204 0.179150 TATTTTGGTCGGCAATGCGC 60.179 50.000 0.00 0.00 41.28 6.09
204 205 1.135546 TGTATTTTGGTCGGCAATGCG 60.136 47.619 0.00 0.00 0.00 4.73
205 206 2.645730 TGTATTTTGGTCGGCAATGC 57.354 45.000 0.00 0.00 0.00 3.56
206 207 4.987912 AGTTTTGTATTTTGGTCGGCAATG 59.012 37.500 0.00 0.00 0.00 2.82
207 208 4.987912 CAGTTTTGTATTTTGGTCGGCAAT 59.012 37.500 0.00 0.00 0.00 3.56
208 209 4.098044 TCAGTTTTGTATTTTGGTCGGCAA 59.902 37.500 0.00 0.00 0.00 4.52
209 210 3.632604 TCAGTTTTGTATTTTGGTCGGCA 59.367 39.130 0.00 0.00 0.00 5.69
210 211 4.231718 TCAGTTTTGTATTTTGGTCGGC 57.768 40.909 0.00 0.00 0.00 5.54
211 212 5.583495 TGTTCAGTTTTGTATTTTGGTCGG 58.417 37.500 0.00 0.00 0.00 4.79
212 213 6.413818 GTCTGTTCAGTTTTGTATTTTGGTCG 59.586 38.462 0.00 0.00 0.00 4.79
213 214 6.413818 CGTCTGTTCAGTTTTGTATTTTGGTC 59.586 38.462 0.00 0.00 0.00 4.02
214 215 6.262601 CGTCTGTTCAGTTTTGTATTTTGGT 58.737 36.000 0.00 0.00 0.00 3.67
215 216 5.685511 CCGTCTGTTCAGTTTTGTATTTTGG 59.314 40.000 0.00 0.00 0.00 3.28
216 217 5.173131 GCCGTCTGTTCAGTTTTGTATTTTG 59.827 40.000 0.00 0.00 0.00 2.44
217 218 5.278604 GCCGTCTGTTCAGTTTTGTATTTT 58.721 37.500 0.00 0.00 0.00 1.82
218 219 4.553938 CGCCGTCTGTTCAGTTTTGTATTT 60.554 41.667 0.00 0.00 0.00 1.40
219 220 3.059188 CGCCGTCTGTTCAGTTTTGTATT 60.059 43.478 0.00 0.00 0.00 1.89
220 221 2.478894 CGCCGTCTGTTCAGTTTTGTAT 59.521 45.455 0.00 0.00 0.00 2.29
221 222 1.862201 CGCCGTCTGTTCAGTTTTGTA 59.138 47.619 0.00 0.00 0.00 2.41
222 223 0.655733 CGCCGTCTGTTCAGTTTTGT 59.344 50.000 0.00 0.00 0.00 2.83
223 224 0.041312 CCGCCGTCTGTTCAGTTTTG 60.041 55.000 0.00 0.00 0.00 2.44
224 225 0.179067 TCCGCCGTCTGTTCAGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
225 226 0.878961 GTCCGCCGTCTGTTCAGTTT 60.879 55.000 0.00 0.00 0.00 2.66
226 227 1.300697 GTCCGCCGTCTGTTCAGTT 60.301 57.895 0.00 0.00 0.00 3.16
227 228 2.338984 GTCCGCCGTCTGTTCAGT 59.661 61.111 0.00 0.00 0.00 3.41
228 229 2.805353 CGTCCGCCGTCTGTTCAG 60.805 66.667 0.00 0.00 0.00 3.02
229 230 4.351938 CCGTCCGCCGTCTGTTCA 62.352 66.667 0.00 0.00 33.66 3.18
230 231 4.047059 TCCGTCCGCCGTCTGTTC 62.047 66.667 0.00 0.00 33.66 3.18
231 232 4.353437 GTCCGTCCGCCGTCTGTT 62.353 66.667 0.00 0.00 33.66 3.16
249 250 4.629523 TGTCCGTTTGGGTCGGCC 62.630 66.667 0.00 0.00 46.49 6.13
250 251 1.726533 TTTTGTCCGTTTGGGTCGGC 61.727 55.000 0.00 0.00 46.49 5.54
252 253 1.862411 GCTTTTTGTCCGTTTGGGTCG 60.862 52.381 0.00 0.00 37.00 4.79
253 254 1.847818 GCTTTTTGTCCGTTTGGGTC 58.152 50.000 0.00 0.00 37.00 4.46
254 255 0.101579 CGCTTTTTGTCCGTTTGGGT 59.898 50.000 0.00 0.00 37.00 4.51
255 256 0.596341 CCGCTTTTTGTCCGTTTGGG 60.596 55.000 0.00 0.00 35.24 4.12
256 257 0.382515 TCCGCTTTTTGTCCGTTTGG 59.617 50.000 0.00 0.00 0.00 3.28
257 258 1.202200 TGTCCGCTTTTTGTCCGTTTG 60.202 47.619 0.00 0.00 0.00 2.93
258 259 1.096416 TGTCCGCTTTTTGTCCGTTT 58.904 45.000 0.00 0.00 0.00 3.60
259 260 1.096416 TTGTCCGCTTTTTGTCCGTT 58.904 45.000 0.00 0.00 0.00 4.44
260 261 1.096416 TTTGTCCGCTTTTTGTCCGT 58.904 45.000 0.00 0.00 0.00 4.69
261 262 2.050691 CATTTGTCCGCTTTTTGTCCG 58.949 47.619 0.00 0.00 0.00 4.79
262 263 1.792367 GCATTTGTCCGCTTTTTGTCC 59.208 47.619 0.00 0.00 0.00 4.02
263 264 1.451651 CGCATTTGTCCGCTTTTTGTC 59.548 47.619 0.00 0.00 0.00 3.18
264 265 1.486439 CGCATTTGTCCGCTTTTTGT 58.514 45.000 0.00 0.00 0.00 2.83
265 266 0.161446 GCGCATTTGTCCGCTTTTTG 59.839 50.000 0.30 0.00 46.14 2.44
266 267 2.516486 GCGCATTTGTCCGCTTTTT 58.484 47.368 0.30 0.00 46.14 1.94
267 268 4.243383 GCGCATTTGTCCGCTTTT 57.757 50.000 0.30 0.00 46.14 2.27
271 272 4.811761 GACGGCGCATTTGTCCGC 62.812 66.667 10.83 0.00 46.49 5.54
273 274 2.480555 CAGACGGCGCATTTGTCC 59.519 61.111 10.83 0.00 33.09 4.02
274 275 2.202349 GCAGACGGCGCATTTGTC 60.202 61.111 10.83 11.43 0.00 3.18
296 297 0.532115 AGCAATTTCAATGGGGCGAC 59.468 50.000 0.00 0.00 0.00 5.19
297 298 0.817013 GAGCAATTTCAATGGGGCGA 59.183 50.000 0.00 0.00 0.00 5.54
298 299 0.819582 AGAGCAATTTCAATGGGGCG 59.180 50.000 0.00 0.00 0.00 6.13
299 300 3.739209 GCTTAGAGCAATTTCAATGGGGC 60.739 47.826 0.00 0.00 41.89 5.80
300 301 4.050852 GCTTAGAGCAATTTCAATGGGG 57.949 45.455 0.00 0.00 41.89 4.96
313 314 4.261363 GCCACTGGAAAATATGCTTAGAGC 60.261 45.833 0.00 0.00 42.82 4.09
314 315 4.024556 CGCCACTGGAAAATATGCTTAGAG 60.025 45.833 0.00 0.00 0.00 2.43
315 316 3.876914 CGCCACTGGAAAATATGCTTAGA 59.123 43.478 0.00 0.00 0.00 2.10
316 317 3.627577 ACGCCACTGGAAAATATGCTTAG 59.372 43.478 0.00 0.00 0.00 2.18
328 329 2.203139 CAACCACACGCCACTGGA 60.203 61.111 0.00 0.00 0.00 3.86
356 357 1.826385 AGAAATGTGCCCGAGAAAGG 58.174 50.000 0.00 0.00 0.00 3.11
379 380 6.072893 GCCTGTTTTGACTATTTTCTCCGTAA 60.073 38.462 0.00 0.00 0.00 3.18
381 382 4.215613 GCCTGTTTTGACTATTTTCTCCGT 59.784 41.667 0.00 0.00 0.00 4.69
384 385 5.915196 GTGTGCCTGTTTTGACTATTTTCTC 59.085 40.000 0.00 0.00 0.00 2.87
385 386 5.505654 CGTGTGCCTGTTTTGACTATTTTCT 60.506 40.000 0.00 0.00 0.00 2.52
499 519 3.551496 CTGGGGCCTGACTTTCGCA 62.551 63.158 0.84 0.00 0.00 5.10
538 570 4.749310 ACGCTTCGGCTCTGGCTG 62.749 66.667 0.00 0.00 45.61 4.85
539 571 4.008933 AACGCTTCGGCTCTGGCT 62.009 61.111 0.00 0.00 39.13 4.75
598 652 6.650390 GGTGGTTGCTCAAATTAAATTGTGAT 59.350 34.615 9.04 0.00 0.00 3.06
668 724 0.765135 TGAGGTGGTCGGGAGGAAAA 60.765 55.000 0.00 0.00 0.00 2.29
678 734 2.034221 GGGCTGGTTGAGGTGGTC 59.966 66.667 0.00 0.00 0.00 4.02
705 761 0.682209 CGGGGAACGGTAGAGGAGAA 60.682 60.000 0.00 0.00 39.42 2.87
706 762 1.077212 CGGGGAACGGTAGAGGAGA 60.077 63.158 0.00 0.00 39.42 3.71
707 763 2.783288 GCGGGGAACGGTAGAGGAG 61.783 68.421 0.00 0.00 44.51 3.69
708 764 2.757099 GCGGGGAACGGTAGAGGA 60.757 66.667 0.00 0.00 44.51 3.71
724 780 4.840005 CGGAGGAAGGCTTCGGGC 62.840 72.222 20.26 11.74 41.18 6.13
727 783 1.448013 GGAACGGAGGAAGGCTTCG 60.448 63.158 20.26 12.34 0.00 3.79
728 784 1.078356 GGGAACGGAGGAAGGCTTC 60.078 63.158 18.98 18.98 0.00 3.86
729 785 2.603652 GGGGAACGGAGGAAGGCTT 61.604 63.158 0.00 0.00 0.00 4.35
730 786 3.009714 GGGGAACGGAGGAAGGCT 61.010 66.667 0.00 0.00 0.00 4.58
731 787 4.468689 CGGGGAACGGAGGAAGGC 62.469 72.222 0.00 0.00 39.42 4.35
759 819 1.153667 GACGGAGCAGGAGAAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
805 865 1.683365 CGAAGAACCCCCTCCGGTA 60.683 63.158 0.00 0.00 33.98 4.02
954 1027 2.356667 CTCCACCCCTTTGCCTCC 59.643 66.667 0.00 0.00 0.00 4.30
955 1028 1.789576 TTCCTCCACCCCTTTGCCTC 61.790 60.000 0.00 0.00 0.00 4.70
956 1029 1.778383 TTCCTCCACCCCTTTGCCT 60.778 57.895 0.00 0.00 0.00 4.75
957 1030 1.304464 CTTCCTCCACCCCTTTGCC 60.304 63.158 0.00 0.00 0.00 4.52
958 1031 1.304464 CCTTCCTCCACCCCTTTGC 60.304 63.158 0.00 0.00 0.00 3.68
959 1032 0.038310 GTCCTTCCTCCACCCCTTTG 59.962 60.000 0.00 0.00 0.00 2.77
960 1033 1.140772 GGTCCTTCCTCCACCCCTTT 61.141 60.000 0.00 0.00 0.00 3.11
961 1034 1.541620 GGTCCTTCCTCCACCCCTT 60.542 63.158 0.00 0.00 0.00 3.95
962 1035 2.125225 GGTCCTTCCTCCACCCCT 59.875 66.667 0.00 0.00 0.00 4.79
963 1036 3.015753 GGGTCCTTCCTCCACCCC 61.016 72.222 0.00 0.00 43.79 4.95
967 1040 0.473117 AGAAACGGGTCCTTCCTCCA 60.473 55.000 0.00 0.00 36.25 3.86
987 1070 2.324332 CTGACATCCCTCGTCGTCCG 62.324 65.000 0.00 0.00 36.11 4.79
1044 1127 1.224592 CACCCTTATCCTTGCCGCT 59.775 57.895 0.00 0.00 0.00 5.52
1050 1133 1.077716 GCGCACCACCCTTATCCTT 60.078 57.895 0.30 0.00 0.00 3.36
1193 1276 2.474816 GAGGCAGTAAATGGAGTAGCG 58.525 52.381 0.00 0.00 0.00 4.26
1231 1318 4.947147 GTGCCTTGGCCCGTGACA 62.947 66.667 9.35 0.00 0.00 3.58
1277 1370 1.531578 GACGAGCAAACAGAGGGAAAC 59.468 52.381 0.00 0.00 0.00 2.78
1279 1372 0.319555 CGACGAGCAAACAGAGGGAA 60.320 55.000 0.00 0.00 0.00 3.97
1281 1374 0.108615 ATCGACGAGCAAACAGAGGG 60.109 55.000 3.01 0.00 0.00 4.30
1338 1436 0.397941 CCTGTCTGAAGGCAGTGGAA 59.602 55.000 10.83 0.00 42.84 3.53
1380 1478 2.851263 ATTGTTTCCGTGGAGTGCTA 57.149 45.000 0.00 0.00 0.00 3.49
1382 1480 2.095415 GGTTATTGTTTCCGTGGAGTGC 60.095 50.000 0.00 0.00 0.00 4.40
1387 1485 3.142951 TGACTGGTTATTGTTTCCGTGG 58.857 45.455 0.00 0.00 0.00 4.94
1389 1487 4.457949 GGATTGACTGGTTATTGTTTCCGT 59.542 41.667 0.00 0.00 0.00 4.69
1390 1488 4.457603 TGGATTGACTGGTTATTGTTTCCG 59.542 41.667 0.00 0.00 0.00 4.30
1392 1490 5.807011 GCATGGATTGACTGGTTATTGTTTC 59.193 40.000 0.00 0.00 0.00 2.78
1428 1540 0.033601 AGTGTCACCACCAAGGCAAA 60.034 50.000 0.00 0.00 42.88 3.68
1477 1594 1.420138 GGAAGGTGAGGACTGGTTCAA 59.580 52.381 0.00 0.00 0.00 2.69
1598 1724 8.725405 TGAACCTTCCCTTTAAAATTCAAAAC 57.275 30.769 0.00 0.00 0.00 2.43
1603 1729 9.554395 TGAAAATGAACCTTCCCTTTAAAATTC 57.446 29.630 0.00 0.00 0.00 2.17
1621 1764 8.257306 GGGTAAATTAGCCTGAAATGAAAATGA 58.743 33.333 13.53 0.00 42.93 2.57
1640 1783 7.776291 AGTAACATAAAGGGGTAGGGTAAAT 57.224 36.000 0.00 0.00 0.00 1.40
1645 1788 6.153851 CCAAAAAGTAACATAAAGGGGTAGGG 59.846 42.308 0.00 0.00 0.00 3.53
1696 2216 8.028354 TGCACAAGTTTCAGGAAATTACATATG 58.972 33.333 0.00 0.00 32.36 1.78
1745 2267 4.436998 GAGGGTCGTGGGCTCGTG 62.437 72.222 3.18 0.00 0.00 4.35
1747 2269 3.461773 ATGAGGGTCGTGGGCTCG 61.462 66.667 0.00 0.00 0.00 5.03
1748 2270 2.185310 AACATGAGGGTCGTGGGCTC 62.185 60.000 0.00 0.00 37.70 4.70
1749 2271 1.779061 AAACATGAGGGTCGTGGGCT 61.779 55.000 0.00 0.00 37.70 5.19
1750 2272 0.893727 AAAACATGAGGGTCGTGGGC 60.894 55.000 0.00 0.00 37.70 5.36
1751 2273 0.881118 CAAAACATGAGGGTCGTGGG 59.119 55.000 0.00 0.00 37.70 4.61
1762 2284 4.322198 CCTGGTCCTCCAAATCAAAACATG 60.322 45.833 0.00 0.00 43.81 3.21
1851 2373 8.963130 CATAAGTAGAGATTTCAGCTTTAGTCG 58.037 37.037 0.00 0.00 0.00 4.18
1930 2452 2.247358 ACTGCAAATTACACCCAAGGG 58.753 47.619 2.91 2.91 42.03 3.95
1937 2459 9.284968 ACCCTAATATGATACTGCAAATTACAC 57.715 33.333 0.00 0.00 0.00 2.90
1947 2469 7.808279 TCCCCTTAACCCTAATATGATACTG 57.192 40.000 0.00 0.00 0.00 2.74
2065 2588 4.689612 TCCTAAACTAATAGCCAGCAGG 57.310 45.455 0.00 0.00 38.23 4.85
2071 2594 7.442656 TGCAAGTAGATCCTAAACTAATAGCC 58.557 38.462 0.00 0.00 0.00 3.93
2150 2674 0.099436 GCACCAATGACATCGCCTTC 59.901 55.000 0.00 0.00 0.00 3.46
2162 2686 2.254152 TCTCCTAGACTGGCACCAAT 57.746 50.000 0.00 0.00 0.00 3.16
2291 2821 5.871396 TTCCAGATTCATACTACCACTCC 57.129 43.478 0.00 0.00 0.00 3.85
2346 2879 2.767505 TGAGCCGAGTTTTTCCTCTTC 58.232 47.619 0.00 0.00 0.00 2.87
2539 3072 1.437625 GAGGTGCTTGTCTCTCTTGC 58.562 55.000 0.00 0.00 0.00 4.01
2559 3092 3.381045 TCTCGTGTTAGCTTTGACACTG 58.619 45.455 19.11 14.44 42.97 3.66
2576 3109 1.612950 CCTCCCTGACATCATCTCTCG 59.387 57.143 0.00 0.00 0.00 4.04
2577 3110 1.344114 GCCTCCCTGACATCATCTCTC 59.656 57.143 0.00 0.00 0.00 3.20
2713 3246 1.984570 CAGGGCCTTCTCCTCGACA 60.985 63.158 1.32 0.00 31.06 4.35
2714 3247 2.896443 CAGGGCCTTCTCCTCGAC 59.104 66.667 1.32 0.00 31.06 4.20
2715 3248 3.077556 GCAGGGCCTTCTCCTCGA 61.078 66.667 1.32 0.00 31.06 4.04
2956 3489 7.630242 ATTGACTTGACCGTTCATGAATATT 57.370 32.000 12.12 0.00 32.42 1.28
2957 3490 7.630242 AATTGACTTGACCGTTCATGAATAT 57.370 32.000 12.12 0.00 32.42 1.28
2958 3491 7.447374 AAATTGACTTGACCGTTCATGAATA 57.553 32.000 12.12 0.00 32.42 1.75
3192 3725 1.293458 AGGAGAGGGTCAGGATCATGT 59.707 52.381 7.33 0.00 0.00 3.21
3231 3764 0.916358 AGGCAGCCTGGTGGTAGAAT 60.916 55.000 15.24 0.00 35.27 2.40
3249 3782 3.120060 GGTAGCAATGTGAGCAAGAACAG 60.120 47.826 0.00 0.00 0.00 3.16
3408 3941 0.172803 GCTGCTGCAAGGAAGGATTG 59.827 55.000 11.11 0.00 39.41 2.67
3507 4040 5.789521 TGCAGTACTTCATAGCAGTTGTAA 58.210 37.500 0.95 0.00 0.00 2.41
3537 4070 1.136110 CCCAACAAGGAGCGTTTGTTT 59.864 47.619 11.75 0.00 44.04 2.83
3650 4183 2.954318 GGTGCAGGAGATAAATGTGCAT 59.046 45.455 0.00 0.00 45.32 3.96
4065 4598 7.491372 GTGTAATCAGGATCATCAAACTCGTTA 59.509 37.037 0.00 0.00 0.00 3.18
4284 4817 5.882557 CCAGTAATCACCAGGATATATTGGC 59.117 44.000 3.70 0.00 38.03 4.52
4401 4934 7.828508 TGCTCTTATATTAGTTTACGGAGGA 57.171 36.000 0.00 0.00 0.00 3.71
4402 4935 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
4451 4984 9.727627 CTCTCCGTAAACTAATATAAGAACGTT 57.272 33.333 0.00 0.00 0.00 3.99
4452 4985 9.113838 TCTCTCCGTAAACTAATATAAGAACGT 57.886 33.333 0.00 0.00 0.00 3.99
4453 4986 9.596677 CTCTCTCCGTAAACTAATATAAGAACG 57.403 37.037 0.00 0.00 0.00 3.95
4462 4995 9.460019 ACTAAAGTACTCTCTCCGTAAACTAAT 57.540 33.333 0.00 0.00 0.00 1.73
4463 4996 8.854614 ACTAAAGTACTCTCTCCGTAAACTAA 57.145 34.615 0.00 0.00 0.00 2.24
4464 4997 8.854614 AACTAAAGTACTCTCTCCGTAAACTA 57.145 34.615 0.00 0.00 0.00 2.24
4465 4998 7.757941 AACTAAAGTACTCTCTCCGTAAACT 57.242 36.000 0.00 0.00 0.00 2.66
4470 5003 8.800332 TCAAATTAACTAAAGTACTCTCTCCGT 58.200 33.333 0.00 0.00 0.00 4.69
4471 5004 9.635520 TTCAAATTAACTAAAGTACTCTCTCCG 57.364 33.333 0.00 0.00 0.00 4.63
5029 5572 9.416284 ACTTATTCAAACAGGGAACTTCTTTAA 57.584 29.630 0.00 0.00 40.21 1.52
5030 5573 8.990163 ACTTATTCAAACAGGGAACTTCTTTA 57.010 30.769 0.00 0.00 40.21 1.85
5133 6523 8.243961 TCTTCACCAAAAACAAATTATCCTCA 57.756 30.769 0.00 0.00 0.00 3.86
5165 6555 8.193438 GCTTAGCAATAGATTTCATTTGACCTT 58.807 33.333 0.00 0.00 0.00 3.50
5353 6748 5.289595 CACCGAGCACTATATTAAGAAGCA 58.710 41.667 0.00 0.00 0.00 3.91
5402 6797 1.406219 CTGAGACCAACGATGTCGCG 61.406 60.000 0.00 0.00 44.43 5.87
5526 6922 2.286294 GGTAGTCAATCAATGCAGCTCG 59.714 50.000 0.00 0.00 0.00 5.03
5532 6928 3.947196 TCACATGGGTAGTCAATCAATGC 59.053 43.478 0.00 0.00 0.00 3.56
5541 6937 5.812642 CACTATTTCAGTCACATGGGTAGTC 59.187 44.000 0.00 0.00 34.26 2.59
5615 7018 9.359653 AGCAATCTAAATTTCAATATACTGCCT 57.640 29.630 0.00 0.00 0.00 4.75
5632 7035 4.908601 TGTCTTCCCAAGAGCAATCTAA 57.091 40.909 0.00 0.00 38.41 2.10
5691 7094 1.068541 GGGAGTTGTTTCCGCATTGAC 60.069 52.381 0.00 0.00 38.17 3.18
5771 7174 1.583054 ATTCGCCGAAAGATACAGGC 58.417 50.000 2.60 0.00 45.67 4.85
5918 7339 2.610976 CGTCACGATAACTTTGGGGACA 60.611 50.000 0.00 0.00 39.83 4.02
5986 7407 0.250295 TGCAGCTACACCACAGGTTC 60.250 55.000 0.00 0.00 31.02 3.62
5987 7408 0.401738 ATGCAGCTACACCACAGGTT 59.598 50.000 0.00 0.00 31.02 3.50
5988 7409 0.036010 GATGCAGCTACACCACAGGT 60.036 55.000 0.00 0.00 35.62 4.00
6035 7456 1.196766 AGATCTGCCAGACTGCCACA 61.197 55.000 0.00 0.00 0.00 4.17
6037 7458 0.906282 TCAGATCTGCCAGACTGCCA 60.906 55.000 18.36 0.00 0.00 4.92
6040 7461 3.204526 GGAAATCAGATCTGCCAGACTG 58.795 50.000 18.36 14.39 0.00 3.51
6041 7462 2.842496 TGGAAATCAGATCTGCCAGACT 59.158 45.455 18.36 0.00 0.00 3.24
6044 7465 3.555527 TCTGGAAATCAGATCTGCCAG 57.444 47.619 28.19 28.19 46.71 4.85
6300 7730 2.027192 TCTCCTTCCCCTCATTTTCACG 60.027 50.000 0.00 0.00 0.00 4.35
6320 7750 2.732412 TGCTAGAAGTCAGTGCAGTC 57.268 50.000 0.00 0.00 0.00 3.51
6325 7755 8.128582 TGTAAAACAAAATGCTAGAAGTCAGTG 58.871 33.333 0.00 0.00 0.00 3.66
6330 7760 7.817418 TCCTGTAAAACAAAATGCTAGAAGT 57.183 32.000 0.00 0.00 0.00 3.01
6374 8466 5.247792 GGAGTAAAAAGGACAGGAGGAAGTA 59.752 44.000 0.00 0.00 0.00 2.24
6375 8467 4.041815 GGAGTAAAAAGGACAGGAGGAAGT 59.958 45.833 0.00 0.00 0.00 3.01
6376 8468 4.580868 GGAGTAAAAAGGACAGGAGGAAG 58.419 47.826 0.00 0.00 0.00 3.46
6377 8469 3.007614 CGGAGTAAAAAGGACAGGAGGAA 59.992 47.826 0.00 0.00 0.00 3.36
6378 8470 2.565834 CGGAGTAAAAAGGACAGGAGGA 59.434 50.000 0.00 0.00 0.00 3.71
6379 8471 2.565834 TCGGAGTAAAAAGGACAGGAGG 59.434 50.000 0.00 0.00 0.00 4.30
6380 8472 3.258622 ACTCGGAGTAAAAAGGACAGGAG 59.741 47.826 9.33 0.00 0.00 3.69
6381 8473 3.236896 ACTCGGAGTAAAAAGGACAGGA 58.763 45.455 9.33 0.00 0.00 3.86
6382 8474 3.679824 ACTCGGAGTAAAAAGGACAGG 57.320 47.619 9.33 0.00 0.00 4.00
6383 8475 7.769220 TCTAATACTCGGAGTAAAAAGGACAG 58.231 38.462 20.77 9.57 33.89 3.51
6384 8476 7.707624 TCTAATACTCGGAGTAAAAAGGACA 57.292 36.000 20.77 0.00 33.89 4.02
6385 8477 9.597170 AAATCTAATACTCGGAGTAAAAAGGAC 57.403 33.333 20.77 0.00 33.89 3.85
6386 8478 9.595823 CAAATCTAATACTCGGAGTAAAAAGGA 57.404 33.333 20.77 14.26 33.89 3.36
6387 8479 8.336080 GCAAATCTAATACTCGGAGTAAAAAGG 58.664 37.037 20.77 10.19 33.89 3.11
6388 8480 8.879759 TGCAAATCTAATACTCGGAGTAAAAAG 58.120 33.333 20.77 16.79 33.89 2.27
6389 8481 8.780846 TGCAAATCTAATACTCGGAGTAAAAA 57.219 30.769 20.77 9.08 33.89 1.94
6390 8482 8.958119 ATGCAAATCTAATACTCGGAGTAAAA 57.042 30.769 20.77 11.30 33.89 1.52
6391 8483 8.201464 TGATGCAAATCTAATACTCGGAGTAAA 58.799 33.333 20.77 11.62 33.89 2.01
6392 8484 7.722363 TGATGCAAATCTAATACTCGGAGTAA 58.278 34.615 20.77 5.90 33.89 2.24
6393 8485 7.284919 TGATGCAAATCTAATACTCGGAGTA 57.715 36.000 19.38 19.38 34.82 2.59
6394 8486 6.161855 TGATGCAAATCTAATACTCGGAGT 57.838 37.500 15.95 15.95 0.00 3.85
6395 8487 6.703607 ACTTGATGCAAATCTAATACTCGGAG 59.296 38.462 2.83 2.83 0.00 4.63
6396 8488 6.582636 ACTTGATGCAAATCTAATACTCGGA 58.417 36.000 0.00 0.00 0.00 4.55
6397 8489 6.479990 TGACTTGATGCAAATCTAATACTCGG 59.520 38.462 0.00 0.00 0.00 4.63
6398 8490 7.468922 TGACTTGATGCAAATCTAATACTCG 57.531 36.000 0.00 0.00 0.00 4.18
6399 8491 9.495754 GTTTGACTTGATGCAAATCTAATACTC 57.504 33.333 0.00 0.00 36.51 2.59
6400 8492 9.236006 AGTTTGACTTGATGCAAATCTAATACT 57.764 29.630 0.00 0.00 36.51 2.12
6401 8493 9.846248 AAGTTTGACTTGATGCAAATCTAATAC 57.154 29.630 0.00 0.00 37.00 1.89
6403 8495 9.199982 CAAAGTTTGACTTGATGCAAATCTAAT 57.800 29.630 10.19 0.00 38.66 1.73
6404 8496 7.169645 GCAAAGTTTGACTTGATGCAAATCTAA 59.830 33.333 19.82 0.00 40.09 2.10
6405 8497 6.642131 GCAAAGTTTGACTTGATGCAAATCTA 59.358 34.615 19.82 0.00 40.09 1.98
6406 8498 5.464389 GCAAAGTTTGACTTGATGCAAATCT 59.536 36.000 19.82 0.00 40.09 2.40
6407 8499 5.234757 TGCAAAGTTTGACTTGATGCAAATC 59.765 36.000 19.82 0.00 44.31 2.17
6408 8500 5.117584 TGCAAAGTTTGACTTGATGCAAAT 58.882 33.333 19.82 0.00 44.31 2.32
6409 8501 4.502016 TGCAAAGTTTGACTTGATGCAAA 58.498 34.783 19.82 0.00 44.31 3.68
6410 8502 4.120792 TGCAAAGTTTGACTTGATGCAA 57.879 36.364 19.82 3.22 44.31 4.08
6411 8503 3.797451 TGCAAAGTTTGACTTGATGCA 57.203 38.095 19.82 13.31 44.77 3.96
6412 8504 4.567959 ACTTTGCAAAGTTTGACTTGATGC 59.432 37.500 33.85 9.44 46.52 3.91
6507 8599 9.970395 GCCAAATCAATATTGTTAGATTCATCA 57.030 29.630 14.97 0.00 30.87 3.07
6508 8600 9.970395 TGCCAAATCAATATTGTTAGATTCATC 57.030 29.630 14.97 2.22 30.87 2.92
6518 8610 9.669887 ACATTTACAATGCCAAATCAATATTGT 57.330 25.926 14.97 0.00 42.59 2.71
6521 8613 9.887629 TCAACATTTACAATGCCAAATCAATAT 57.112 25.926 0.00 0.00 0.00 1.28
6522 8614 9.887629 ATCAACATTTACAATGCCAAATCAATA 57.112 25.926 0.00 0.00 0.00 1.90
6523 8615 8.795842 ATCAACATTTACAATGCCAAATCAAT 57.204 26.923 0.00 0.00 0.00 2.57
6524 8616 9.716531 TTATCAACATTTACAATGCCAAATCAA 57.283 25.926 0.00 0.00 0.00 2.57
6525 8617 9.887629 ATTATCAACATTTACAATGCCAAATCA 57.112 25.926 0.00 0.00 0.00 2.57
6559 8651 9.678260 AAGCATCTCTACTTTGATCAAACTTAT 57.322 29.630 16.91 5.88 0.00 1.73
6560 8652 9.507329 AAAGCATCTCTACTTTGATCAAACTTA 57.493 29.630 16.91 10.02 34.88 2.24
6561 8653 7.992754 AAGCATCTCTACTTTGATCAAACTT 57.007 32.000 16.91 11.85 0.00 2.66
6562 8654 7.992754 AAAGCATCTCTACTTTGATCAAACT 57.007 32.000 16.91 10.72 34.88 2.66
6571 8663 7.177568 TGTCTAGAGTCAAAGCATCTCTACTTT 59.822 37.037 0.00 0.00 39.03 2.66
6572 8664 6.661377 TGTCTAGAGTCAAAGCATCTCTACTT 59.339 38.462 0.00 0.00 39.03 2.24
6573 8665 6.184068 TGTCTAGAGTCAAAGCATCTCTACT 58.816 40.000 0.00 0.00 39.03 2.57
6574 8666 6.443934 TGTCTAGAGTCAAAGCATCTCTAC 57.556 41.667 0.00 0.00 39.03 2.59
6575 8667 7.468141 TTTGTCTAGAGTCAAAGCATCTCTA 57.532 36.000 4.79 0.00 39.03 2.43
6576 8668 5.991933 TTGTCTAGAGTCAAAGCATCTCT 57.008 39.130 0.00 0.00 40.85 3.10
6577 8669 6.648725 AGTTTTGTCTAGAGTCAAAGCATCTC 59.351 38.462 18.48 0.00 37.00 2.75
6578 8670 6.529220 AGTTTTGTCTAGAGTCAAAGCATCT 58.471 36.000 18.48 9.97 37.00 2.90
6579 8671 6.793492 AGTTTTGTCTAGAGTCAAAGCATC 57.207 37.500 18.48 8.57 37.00 3.91
6580 8672 8.854614 ATAAGTTTTGTCTAGAGTCAAAGCAT 57.145 30.769 18.48 12.40 37.00 3.79
6581 8673 9.204570 GTATAAGTTTTGTCTAGAGTCAAAGCA 57.795 33.333 18.48 5.73 37.00 3.91
6582 8674 8.373992 CGTATAAGTTTTGTCTAGAGTCAAAGC 58.626 37.037 12.11 12.11 35.29 3.51
6583 8675 8.373992 GCGTATAAGTTTTGTCTAGAGTCAAAG 58.626 37.037 8.14 0.00 35.29 2.77
6584 8676 7.868922 TGCGTATAAGTTTTGTCTAGAGTCAAA 59.131 33.333 4.79 4.79 32.81 2.69
6585 8677 7.372714 TGCGTATAAGTTTTGTCTAGAGTCAA 58.627 34.615 0.00 0.00 0.00 3.18
6586 8678 6.916440 TGCGTATAAGTTTTGTCTAGAGTCA 58.084 36.000 0.00 0.00 0.00 3.41
6587 8679 7.218583 GTCTGCGTATAAGTTTTGTCTAGAGTC 59.781 40.741 0.00 0.00 0.00 3.36
6588 8680 7.028361 GTCTGCGTATAAGTTTTGTCTAGAGT 58.972 38.462 0.00 0.00 0.00 3.24
6589 8681 7.027760 TGTCTGCGTATAAGTTTTGTCTAGAG 58.972 38.462 0.00 0.00 0.00 2.43
6590 8682 6.916440 TGTCTGCGTATAAGTTTTGTCTAGA 58.084 36.000 0.00 0.00 0.00 2.43
6591 8683 7.576750 TTGTCTGCGTATAAGTTTTGTCTAG 57.423 36.000 0.00 0.00 0.00 2.43
6592 8684 7.949903 TTTGTCTGCGTATAAGTTTTGTCTA 57.050 32.000 0.00 0.00 0.00 2.59
6593 8685 6.854496 TTTGTCTGCGTATAAGTTTTGTCT 57.146 33.333 0.00 0.00 0.00 3.41
6594 8686 7.901874 TTTTTGTCTGCGTATAAGTTTTGTC 57.098 32.000 0.00 0.00 0.00 3.18
6595 8687 8.132362 TCATTTTTGTCTGCGTATAAGTTTTGT 58.868 29.630 0.00 0.00 0.00 2.83
6596 8688 8.417176 GTCATTTTTGTCTGCGTATAAGTTTTG 58.583 33.333 0.00 0.00 0.00 2.44
6597 8689 7.322699 CGTCATTTTTGTCTGCGTATAAGTTTT 59.677 33.333 0.00 0.00 0.00 2.43
6598 8690 6.795114 CGTCATTTTTGTCTGCGTATAAGTTT 59.205 34.615 0.00 0.00 0.00 2.66
6599 8691 6.304126 CGTCATTTTTGTCTGCGTATAAGTT 58.696 36.000 0.00 0.00 0.00 2.66
6600 8692 5.163893 CCGTCATTTTTGTCTGCGTATAAGT 60.164 40.000 0.00 0.00 0.00 2.24
6601 8693 5.255596 CCGTCATTTTTGTCTGCGTATAAG 58.744 41.667 0.00 0.00 0.00 1.73
6602 8694 4.093703 CCCGTCATTTTTGTCTGCGTATAA 59.906 41.667 0.00 0.00 0.00 0.98
6603 8695 3.619483 CCCGTCATTTTTGTCTGCGTATA 59.381 43.478 0.00 0.00 0.00 1.47
6604 8696 2.418628 CCCGTCATTTTTGTCTGCGTAT 59.581 45.455 0.00 0.00 0.00 3.06
6605 8697 1.801771 CCCGTCATTTTTGTCTGCGTA 59.198 47.619 0.00 0.00 0.00 4.42
6606 8698 0.591170 CCCGTCATTTTTGTCTGCGT 59.409 50.000 0.00 0.00 0.00 5.24
6607 8699 0.871722 TCCCGTCATTTTTGTCTGCG 59.128 50.000 0.00 0.00 0.00 5.18
6608 8700 1.200020 CCTCCCGTCATTTTTGTCTGC 59.800 52.381 0.00 0.00 0.00 4.26
6609 8701 2.778299 TCCTCCCGTCATTTTTGTCTG 58.222 47.619 0.00 0.00 0.00 3.51
6610 8702 3.181443 ACTTCCTCCCGTCATTTTTGTCT 60.181 43.478 0.00 0.00 0.00 3.41
6611 8703 3.146847 ACTTCCTCCCGTCATTTTTGTC 58.853 45.455 0.00 0.00 0.00 3.18
6612 8704 3.223674 ACTTCCTCCCGTCATTTTTGT 57.776 42.857 0.00 0.00 0.00 2.83
6613 8705 4.700213 ACATACTTCCTCCCGTCATTTTTG 59.300 41.667 0.00 0.00 0.00 2.44
6614 8706 4.918588 ACATACTTCCTCCCGTCATTTTT 58.081 39.130 0.00 0.00 0.00 1.94
6615 8707 4.569719 ACATACTTCCTCCCGTCATTTT 57.430 40.909 0.00 0.00 0.00 1.82
6616 8708 5.611374 CATACATACTTCCTCCCGTCATTT 58.389 41.667 0.00 0.00 0.00 2.32
6617 8709 4.503296 GCATACATACTTCCTCCCGTCATT 60.503 45.833 0.00 0.00 0.00 2.57
6618 8710 3.006967 GCATACATACTTCCTCCCGTCAT 59.993 47.826 0.00 0.00 0.00 3.06
6619 8711 2.364324 GCATACATACTTCCTCCCGTCA 59.636 50.000 0.00 0.00 0.00 4.35
6620 8712 2.288886 GGCATACATACTTCCTCCCGTC 60.289 54.545 0.00 0.00 0.00 4.79
6621 8713 1.692519 GGCATACATACTTCCTCCCGT 59.307 52.381 0.00 0.00 0.00 5.28
6622 8714 1.691976 TGGCATACATACTTCCTCCCG 59.308 52.381 0.00 0.00 0.00 5.14
6623 8715 3.857157 TTGGCATACATACTTCCTCCC 57.143 47.619 0.00 0.00 0.00 4.30
6624 8716 4.973168 TGATTGGCATACATACTTCCTCC 58.027 43.478 0.00 0.00 0.00 4.30
6625 8717 6.291377 TCTTGATTGGCATACATACTTCCTC 58.709 40.000 0.00 0.00 0.00 3.71
6626 8718 6.100279 TCTCTTGATTGGCATACATACTTCCT 59.900 38.462 0.00 0.00 0.00 3.36
6627 8719 6.203723 GTCTCTTGATTGGCATACATACTTCC 59.796 42.308 0.00 0.00 0.00 3.46
6628 8720 6.203723 GGTCTCTTGATTGGCATACATACTTC 59.796 42.308 0.00 0.00 0.00 3.01
6629 8721 6.058183 GGTCTCTTGATTGGCATACATACTT 58.942 40.000 0.00 0.00 0.00 2.24
6630 8722 5.130975 TGGTCTCTTGATTGGCATACATACT 59.869 40.000 0.00 0.00 0.00 2.12
6631 8723 5.368145 TGGTCTCTTGATTGGCATACATAC 58.632 41.667 0.00 0.00 0.00 2.39
6657 8749 2.476534 CTTGGGTTCATGTGCACGCC 62.477 60.000 13.13 8.79 0.00 5.68
6658 8750 1.081242 CTTGGGTTCATGTGCACGC 60.081 57.895 13.13 0.00 0.00 5.34
6670 8762 5.701224 TCCTGAAATTAACAGAACTTGGGT 58.299 37.500 12.28 0.00 37.54 4.51
6678 8770 8.966868 GGACCAAAATATCCTGAAATTAACAGA 58.033 33.333 12.28 2.39 37.54 3.41
6679 8771 8.197439 GGGACCAAAATATCCTGAAATTAACAG 58.803 37.037 0.00 5.82 35.15 3.16
6682 8774 7.147983 CGTGGGACCAAAATATCCTGAAATTAA 60.148 37.037 0.00 0.00 35.15 1.40
6688 8780 2.682563 GCGTGGGACCAAAATATCCTGA 60.683 50.000 0.00 0.00 35.15 3.86
6689 8781 1.676006 GCGTGGGACCAAAATATCCTG 59.324 52.381 0.00 0.00 35.15 3.86
6692 8784 2.052782 AGGCGTGGGACCAAAATATC 57.947 50.000 0.00 0.00 0.00 1.63
6693 8785 2.291282 TGAAGGCGTGGGACCAAAATAT 60.291 45.455 0.00 0.00 0.00 1.28
6694 8786 1.074084 TGAAGGCGTGGGACCAAAATA 59.926 47.619 0.00 0.00 0.00 1.40
6695 8787 0.178975 TGAAGGCGTGGGACCAAAAT 60.179 50.000 0.00 0.00 0.00 1.82
6696 8788 0.178975 ATGAAGGCGTGGGACCAAAA 60.179 50.000 0.00 0.00 0.00 2.44
6697 8789 0.893270 CATGAAGGCGTGGGACCAAA 60.893 55.000 0.00 0.00 0.00 3.28
6698 8790 1.303236 CATGAAGGCGTGGGACCAA 60.303 57.895 0.00 0.00 0.00 3.67
6699 8791 2.350895 CATGAAGGCGTGGGACCA 59.649 61.111 0.00 0.00 0.00 4.02
6700 8792 3.134127 GCATGAAGGCGTGGGACC 61.134 66.667 0.00 0.00 0.00 4.46
6701 8793 1.523154 TTTGCATGAAGGCGTGGGAC 61.523 55.000 0.00 0.00 36.28 4.46
6702 8794 0.825425 TTTTGCATGAAGGCGTGGGA 60.825 50.000 0.00 0.00 36.28 4.37
6703 8795 0.667184 GTTTTGCATGAAGGCGTGGG 60.667 55.000 0.00 0.00 36.28 4.61
6704 8796 0.031857 TGTTTTGCATGAAGGCGTGG 59.968 50.000 0.00 0.00 36.28 4.94
6705 8797 1.850377 TTGTTTTGCATGAAGGCGTG 58.150 45.000 0.00 0.00 36.28 5.34
6706 8798 2.593346 TTTGTTTTGCATGAAGGCGT 57.407 40.000 0.00 0.00 36.28 5.68
6707 8799 3.940657 TTTTTGTTTTGCATGAAGGCG 57.059 38.095 0.00 0.00 36.28 5.52
6744 11339 5.104569 TGTCACCATAATGTTGCTATCTCCA 60.105 40.000 0.00 0.00 0.00 3.86
6789 11384 2.225547 ACTTCAGGTAGGCAAGGTAGGA 60.226 50.000 0.00 0.00 0.00 2.94
6832 11427 9.560952 CTGATGGTTCAGGTCCTAGGTAGGATA 62.561 48.148 9.08 0.00 45.66 2.59
6833 11428 8.858223 CTGATGGTTCAGGTCCTAGGTAGGAT 62.858 50.000 9.08 0.00 45.66 3.24
6888 11484 3.130633 GACCAAACACCATGCTTTTTCC 58.869 45.455 0.00 0.00 0.00 3.13
6889 11485 3.130633 GGACCAAACACCATGCTTTTTC 58.869 45.455 0.00 0.00 0.00 2.29
6890 11486 2.503356 TGGACCAAACACCATGCTTTTT 59.497 40.909 0.00 0.00 0.00 1.94
6891 11487 2.114616 TGGACCAAACACCATGCTTTT 58.885 42.857 0.00 0.00 0.00 2.27
6902 11500 0.108585 TCAGCTCAGGTGGACCAAAC 59.891 55.000 3.49 0.00 38.89 2.93
6905 11503 2.587247 GCTCAGCTCAGGTGGACCA 61.587 63.158 3.49 0.00 38.89 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.