Multiple sequence alignment - TraesCS7B01G276500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G276500 chr7B 100.000 6123 0 0 1 6123 505934553 505940675 0.000000e+00 11308.0
1 TraesCS7B01G276500 chr7B 87.879 264 24 6 3027 3285 504480178 504479918 2.770000e-78 303.0
2 TraesCS7B01G276500 chr7B 87.786 262 21 8 3030 3285 322488712 322488456 4.640000e-76 296.0
3 TraesCS7B01G276500 chr7D 95.880 3981 119 21 21 3977 479999849 480003808 0.000000e+00 6401.0
4 TraesCS7B01G276500 chr7D 94.951 1624 52 10 4101 5717 480003807 480005407 0.000000e+00 2518.0
5 TraesCS7B01G276500 chr7D 89.369 301 23 3 5782 6074 480006853 480007152 2.700000e-98 370.0
6 TraesCS7B01G276500 chr7D 88.931 262 23 4 3030 3285 363048924 363048663 9.900000e-83 318.0
7 TraesCS7B01G276500 chr7A 94.302 2141 96 18 631 2762 514925851 514923728 0.000000e+00 3254.0
8 TraesCS7B01G276500 chr7A 91.105 1113 80 12 4101 5210 514922525 514921429 0.000000e+00 1489.0
9 TraesCS7B01G276500 chr7A 87.900 438 39 13 5257 5691 514921413 514920987 2.550000e-138 503.0
10 TraesCS7B01G276500 chr7A 84.095 547 54 14 3283 3819 514923604 514923081 1.190000e-136 497.0
11 TraesCS7B01G276500 chr7A 87.578 161 16 4 3821 3977 514922695 514922535 3.770000e-42 183.0
12 TraesCS7B01G276500 chr7A 93.162 117 7 1 2917 3032 514923718 514923602 2.930000e-38 171.0
13 TraesCS7B01G276500 chr5B 88.025 1570 172 8 1064 2627 462731672 462730113 0.000000e+00 1844.0
14 TraesCS7B01G276500 chr5B 94.231 208 11 1 4579 4785 462729905 462729698 3.560000e-82 316.0
15 TraesCS7B01G276500 chr5B 93.210 162 9 1 2754 2915 665744461 665744620 2.850000e-58 237.0
16 TraesCS7B01G276500 chr5B 96.429 140 3 2 3976 4114 384570608 384570470 4.770000e-56 230.0
17 TraesCS7B01G276500 chr5B 97.656 128 3 0 3975 4102 609604319 609604446 2.870000e-53 220.0
18 TraesCS7B01G276500 chr5B 91.753 97 7 1 5003 5099 462729700 462729605 3.850000e-27 134.0
19 TraesCS7B01G276500 chr5A 87.962 1570 162 14 1064 2627 487338309 487336761 0.000000e+00 1827.0
20 TraesCS7B01G276500 chr5A 92.453 212 14 2 4575 4785 487336562 487336352 9.970000e-78 302.0
21 TraesCS7B01G276500 chr5A 94.845 97 5 0 5003 5099 487336354 487336258 1.060000e-32 152.0
22 TraesCS7B01G276500 chr5D 87.564 1568 182 7 1067 2627 385442946 385441385 0.000000e+00 1803.0
23 TraesCS7B01G276500 chr5D 93.750 208 12 1 4579 4785 385441177 385440970 1.660000e-80 311.0
24 TraesCS7B01G276500 chr5D 93.210 162 9 1 2754 2915 528717270 528717429 2.850000e-58 237.0
25 TraesCS7B01G276500 chr5D 93.939 99 6 0 5003 5101 385440972 385440874 3.820000e-32 150.0
26 TraesCS7B01G276500 chr2A 86.269 386 44 7 189 568 589277124 589276742 1.590000e-110 411.0
27 TraesCS7B01G276500 chr6D 87.762 286 28 5 3019 3298 348087588 348087872 1.650000e-85 327.0
28 TraesCS7B01G276500 chr6D 94.340 159 8 1 2761 2919 410398432 410398275 6.130000e-60 243.0
29 TraesCS7B01G276500 chr6D 90.323 62 6 0 48 109 461525488 461525549 1.410000e-11 82.4
30 TraesCS7B01G276500 chr2D 89.057 265 21 6 3031 3289 485982856 485982594 7.660000e-84 322.0
31 TraesCS7B01G276500 chr2D 94.340 159 9 0 2762 2920 79056167 79056325 1.700000e-60 244.0
32 TraesCS7B01G276500 chr2D 96.377 138 5 0 3976 4113 445188594 445188731 1.720000e-55 228.0
33 TraesCS7B01G276500 chr4B 87.454 271 25 8 3022 3285 611856153 611855885 2.770000e-78 303.0
34 TraesCS7B01G276500 chr4B 97.037 135 4 0 3976 4110 32817564 32817698 1.720000e-55 228.0
35 TraesCS7B01G276500 chr4B 90.141 71 6 1 528 598 383651375 383651306 2.350000e-14 91.6
36 TraesCS7B01G276500 chr4B 88.136 59 7 0 48 106 532716496 532716438 3.060000e-08 71.3
37 TraesCS7B01G276500 chr3D 86.617 269 26 9 3030 3292 405822366 405822102 7.770000e-74 289.0
38 TraesCS7B01G276500 chr3D 92.216 167 13 0 2762 2928 322435292 322435458 2.850000e-58 237.0
39 TraesCS7B01G276500 chr4D 86.347 271 27 9 3022 3285 482161733 482161466 2.790000e-73 287.0
40 TraesCS7B01G276500 chr4A 95.455 154 7 0 2762 2915 598724607 598724454 4.740000e-61 246.0
41 TraesCS7B01G276500 chr3B 92.814 167 12 0 2762 2928 396271879 396272045 6.130000e-60 243.0
42 TraesCS7B01G276500 chr3B 97.727 132 3 0 3976 4107 201088253 201088122 1.720000e-55 228.0
43 TraesCS7B01G276500 chr3B 82.407 108 15 3 408 513 622472307 622472412 2.350000e-14 91.6
44 TraesCS7B01G276500 chr6B 91.525 177 9 5 2761 2934 617176735 617176562 7.930000e-59 239.0
45 TraesCS7B01G276500 chr6B 91.803 61 3 2 48 107 498637622 498637681 3.930000e-12 84.2
46 TraesCS7B01G276500 chr3A 98.507 134 2 0 3975 4108 598561952 598561819 2.850000e-58 237.0
47 TraesCS7B01G276500 chr3A 82.569 109 13 4 408 513 610550321 610550426 2.350000e-14 91.6
48 TraesCS7B01G276500 chr2B 97.761 134 3 0 3976 4109 800544910 800545043 1.330000e-56 231.0
49 TraesCS7B01G276500 chr2B 91.824 159 8 5 3945 4102 547432055 547431901 3.720000e-52 217.0
50 TraesCS7B01G276500 chrUn 99.213 127 1 0 3976 4102 322720410 322720536 4.770000e-56 230.0
51 TraesCS7B01G276500 chr1D 88.000 50 2 3 955 1003 331560522 331560476 8.570000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G276500 chr7B 505934553 505940675 6122 False 11308.000000 11308 100.000000 1 6123 1 chr7B.!!$F1 6122
1 TraesCS7B01G276500 chr7D 479999849 480007152 7303 False 3096.333333 6401 93.400000 21 6074 3 chr7D.!!$F1 6053
2 TraesCS7B01G276500 chr7A 514920987 514925851 4864 True 1016.166667 3254 89.690333 631 5691 6 chr7A.!!$R1 5060
3 TraesCS7B01G276500 chr5B 462729605 462731672 2067 True 764.666667 1844 91.336333 1064 5099 3 chr5B.!!$R2 4035
4 TraesCS7B01G276500 chr5A 487336258 487338309 2051 True 760.333333 1827 91.753333 1064 5099 3 chr5A.!!$R1 4035
5 TraesCS7B01G276500 chr5D 385440874 385442946 2072 True 754.666667 1803 91.751000 1067 5101 3 chr5D.!!$R1 4034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 2.033448 TGGTGGCGACAATGGTCC 59.967 61.111 0.00 0.0 46.06 4.46 F
1227 1252 1.821332 CCCGCCCAAGCAGAAGATC 60.821 63.158 0.00 0.0 39.83 2.75 F
1998 2029 0.842635 GTGAGGGGATTGAGGATGCT 59.157 55.000 0.00 0.0 0.00 3.79 F
2607 2639 1.609239 CCAGCCAGCCCTTGATACA 59.391 57.895 0.00 0.0 0.00 2.29 F
3768 3809 0.172803 GCAAAGCAGAGCCAATGGAG 59.827 55.000 2.05 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1311 1336 0.179084 CATACTTGACCCACGCCGAT 60.179 55.0 0.00 0.0 0.00 4.18 R
2157 2188 0.460459 GCCAGTACCGCTTCTCTTCC 60.460 60.0 0.00 0.0 0.00 3.46 R
3748 3789 0.251474 TCCATTGGCTCTGCTTTGCT 60.251 50.0 0.00 0.0 0.00 3.91 R
4079 4508 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
5936 7772 0.108804 GCACTTCGGCAGCTACAGTA 60.109 55.0 0.00 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.033448 TGGTGGCGACAATGGTCC 59.967 61.111 0.00 0.00 46.06 4.46
112 113 4.830826 AGATTTGACCCTTTTCACGAAC 57.169 40.909 0.00 0.00 0.00 3.95
114 115 4.827284 AGATTTGACCCTTTTCACGAACAT 59.173 37.500 0.00 0.00 0.00 2.71
127 128 5.570262 TCACGAACATTTGTTTCGTAGAG 57.430 39.130 9.58 0.00 38.60 2.43
210 211 5.279960 CGGGGAAGATATCACATGATACCAA 60.280 44.000 5.32 0.00 39.57 3.67
214 215 6.428159 GGAAGATATCACATGATACCAACCAC 59.572 42.308 5.32 0.00 39.57 4.16
308 310 4.019792 TGTGCACAAGACATGTTCCTAT 57.980 40.909 19.28 0.00 41.46 2.57
470 473 8.537049 TTTGCATTTCAAATTCGAATCTGATT 57.463 26.923 14.63 1.81 39.58 2.57
471 474 8.537049 TTGCATTTCAAATTCGAATCTGATTT 57.463 26.923 14.63 1.52 0.00 2.17
592 596 6.114187 TGATGGTTGGTATCACAGGATATC 57.886 41.667 0.00 0.00 38.24 1.63
594 598 6.329986 TGATGGTTGGTATCACAGGATATCTT 59.670 38.462 2.05 0.00 37.87 2.40
616 620 2.836981 CCCCTTCTTCATCTCACTCAGT 59.163 50.000 0.00 0.00 0.00 3.41
617 621 3.369261 CCCCTTCTTCATCTCACTCAGTG 60.369 52.174 0.00 0.00 34.45 3.66
639 643 4.235360 GGTGTCCGGATATTCGATTAGTG 58.765 47.826 7.81 0.00 0.00 2.74
645 649 8.145767 TGTCCGGATATTCGATTAGTGTTTTAT 58.854 33.333 7.81 0.00 0.00 1.40
646 650 9.630098 GTCCGGATATTCGATTAGTGTTTTATA 57.370 33.333 7.81 0.00 0.00 0.98
647 651 9.850628 TCCGGATATTCGATTAGTGTTTTATAG 57.149 33.333 4.54 0.00 0.00 1.31
648 652 9.635520 CCGGATATTCGATTAGTGTTTTATAGT 57.364 33.333 4.54 0.00 0.00 2.12
728 750 4.056050 CCAACACGAGCACTTAAACTACT 58.944 43.478 0.00 0.00 0.00 2.57
729 751 4.150098 CCAACACGAGCACTTAAACTACTC 59.850 45.833 0.00 0.00 0.00 2.59
730 752 3.910648 ACACGAGCACTTAAACTACTCC 58.089 45.455 0.00 0.00 0.00 3.85
731 753 3.573110 ACACGAGCACTTAAACTACTCCT 59.427 43.478 0.00 0.00 0.00 3.69
732 754 4.763793 ACACGAGCACTTAAACTACTCCTA 59.236 41.667 0.00 0.00 0.00 2.94
733 755 5.094134 CACGAGCACTTAAACTACTCCTAC 58.906 45.833 0.00 0.00 0.00 3.18
859 884 3.532155 CTCCTCGCCTTCCTCCGG 61.532 72.222 0.00 0.00 0.00 5.14
879 904 2.185350 CACTCCGGCATCGAGCTT 59.815 61.111 0.00 0.00 44.79 3.74
883 908 4.880537 CCGGCATCGAGCTTCGCT 62.881 66.667 0.00 0.00 44.79 4.93
953 978 2.578586 CTTGCCCCCTCCTCCCATTG 62.579 65.000 0.00 0.00 0.00 2.82
1227 1252 1.821332 CCCGCCCAAGCAGAAGATC 60.821 63.158 0.00 0.00 39.83 2.75
1347 1372 4.432741 GCCAAGTGGGAGGAGGGC 62.433 72.222 0.00 0.00 40.01 5.19
1668 1699 1.048601 GATATGGGGAGGTTGAGCGA 58.951 55.000 0.00 0.00 0.00 4.93
1689 1720 1.273606 GCTAGGGCAATCTATGAGCGA 59.726 52.381 0.00 0.00 38.54 4.93
1761 1792 3.653344 TGAGATGAAACGTGGAGAAGTG 58.347 45.455 0.00 0.00 0.00 3.16
1947 1978 3.054361 GGGCTGAGGATCTTTACAGGAAA 60.054 47.826 0.00 0.00 34.92 3.13
1951 1982 6.118852 GCTGAGGATCTTTACAGGAAATTCT 58.881 40.000 0.00 0.00 34.92 2.40
1998 2029 0.842635 GTGAGGGGATTGAGGATGCT 59.157 55.000 0.00 0.00 0.00 3.79
2046 2077 5.972327 ATGAAGATGAGGTGAGGAAGAAT 57.028 39.130 0.00 0.00 0.00 2.40
2310 2341 8.296713 CACAAGAAATTTACCTTTGCTAAGCTA 58.703 33.333 2.02 0.00 0.00 3.32
2467 2499 3.470645 ACTTTGACCGCTGTAGAACTT 57.529 42.857 0.00 0.00 0.00 2.66
2472 2504 3.645884 TGACCGCTGTAGAACTTTGTAC 58.354 45.455 0.00 0.00 0.00 2.90
2589 2621 5.111989 TCAATATATGAGCTTGCTATCGCC 58.888 41.667 0.00 0.00 33.04 5.54
2607 2639 1.609239 CCAGCCAGCCCTTGATACA 59.391 57.895 0.00 0.00 0.00 2.29
2638 2670 5.871396 TCTATGGAAGGTATGTTGTCCTC 57.129 43.478 0.00 0.00 33.09 3.71
2730 2762 7.810658 ACATTCTTATATGCCTCAAATAAGCG 58.189 34.615 0.00 0.00 34.57 4.68
2825 2857 7.996098 TCTGAATCGGATGTATATAGACACA 57.004 36.000 1.52 0.00 30.52 3.72
2856 2888 3.068024 TGTTTGTTCACTCATTTCAGCCC 59.932 43.478 0.00 0.00 0.00 5.19
2881 2913 9.314321 CCGTATGTAGTCCATATTGAAATATCC 57.686 37.037 0.00 0.00 38.29 2.59
2928 2960 6.071108 CGGAGGGAGTATCATATTTGATCTGT 60.071 42.308 1.58 0.00 41.73 3.41
3279 3314 5.873179 TGCAGAGTAAATAAAAACGGAGG 57.127 39.130 0.00 0.00 0.00 4.30
3284 3319 7.325694 CAGAGTAAATAAAAACGGAGGGAGTA 58.674 38.462 0.00 0.00 0.00 2.59
3296 3331 4.224370 ACGGAGGGAGTAACATGTTAACAT 59.776 41.667 19.63 15.47 36.96 2.71
3320 3355 4.710324 CCACCTAGAGAGTAGACAGTAGG 58.290 52.174 0.00 0.00 34.38 3.18
3338 3373 5.123820 CAGTAGGGATCAGAGATCGATCTTC 59.876 48.000 27.90 20.26 39.42 2.87
3585 3625 7.320399 ACTACCTTAGCATTTTTAAACCATGC 58.680 34.615 18.15 18.15 43.15 4.06
3664 3705 2.763249 GTGAAACAACTGCTGGACAG 57.237 50.000 0.00 0.00 45.06 3.51
3731 3772 4.215613 GGTGGGACTTTGTTGACTTGTATC 59.784 45.833 0.00 0.00 0.00 2.24
3748 3789 5.467668 TGTATCCTTCAGTCTTCTCCCTA 57.532 43.478 0.00 0.00 0.00 3.53
3768 3809 0.172803 GCAAAGCAGAGCCAATGGAG 59.827 55.000 2.05 0.00 0.00 3.86
3851 4276 9.998106 TTTGATCTCTTAGCTACAGTTTTAAGT 57.002 29.630 0.00 0.00 0.00 2.24
3857 4282 9.646427 CTCTTAGCTACAGTTTTAAGTGAGAAT 57.354 33.333 0.00 0.00 33.57 2.40
3933 4359 8.753497 ACATGGACCTTTTATTCTTAGGAATC 57.247 34.615 2.94 0.00 41.75 2.52
3975 4404 3.362706 AGATGCAGCATTCATCCTTGTT 58.637 40.909 9.90 0.00 39.68 2.83
3976 4405 4.529897 AGATGCAGCATTCATCCTTGTTA 58.470 39.130 9.90 0.00 39.68 2.41
3977 4406 4.337555 AGATGCAGCATTCATCCTTGTTAC 59.662 41.667 9.90 0.00 39.68 2.50
3978 4407 3.689347 TGCAGCATTCATCCTTGTTACT 58.311 40.909 0.00 0.00 0.00 2.24
3979 4408 3.691118 TGCAGCATTCATCCTTGTTACTC 59.309 43.478 0.00 0.00 0.00 2.59
3980 4409 3.065925 GCAGCATTCATCCTTGTTACTCC 59.934 47.826 0.00 0.00 0.00 3.85
3981 4410 3.629398 CAGCATTCATCCTTGTTACTCCC 59.371 47.826 0.00 0.00 0.00 4.30
3982 4411 3.525199 AGCATTCATCCTTGTTACTCCCT 59.475 43.478 0.00 0.00 0.00 4.20
3983 4412 3.879892 GCATTCATCCTTGTTACTCCCTC 59.120 47.826 0.00 0.00 0.00 4.30
3984 4413 4.455606 CATTCATCCTTGTTACTCCCTCC 58.544 47.826 0.00 0.00 0.00 4.30
3985 4414 2.108168 TCATCCTTGTTACTCCCTCCG 58.892 52.381 0.00 0.00 0.00 4.63
3986 4415 1.831736 CATCCTTGTTACTCCCTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
3987 4416 1.553706 TCCTTGTTACTCCCTCCGTC 58.446 55.000 0.00 0.00 0.00 4.79
3988 4417 0.535797 CCTTGTTACTCCCTCCGTCC 59.464 60.000 0.00 0.00 0.00 4.79
3989 4418 0.172803 CTTGTTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
3990 4419 0.251297 TTGTTACTCCCTCCGTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
3991 4420 0.251297 TGTTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
3992 4421 0.890683 GTTACTCCCTCCGTCCGAAA 59.109 55.000 0.00 0.00 0.00 3.46
3993 4422 1.273327 GTTACTCCCTCCGTCCGAAAA 59.727 52.381 0.00 0.00 0.00 2.29
3994 4423 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
3995 4424 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3996 4425 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3997 4426 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3998 4427 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3999 4428 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4000 4429 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4001 4430 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4002 4431 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
4003 4432 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4004 4433 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4005 4434 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4006 4435 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4007 4436 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4008 4437 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4009 4438 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4010 4439 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4011 4440 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4012 4441 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4013 4442 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
4014 4443 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
4015 4444 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
4016 4445 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
4017 4446 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
4018 4447 9.480053 AATACTTGTCATCAAAATGGACAAAAG 57.520 29.630 7.70 0.73 34.98 2.27
4019 4448 6.282930 ACTTGTCATCAAAATGGACAAAAGG 58.717 36.000 7.70 0.41 34.98 3.11
4020 4449 5.212532 TGTCATCAAAATGGACAAAAGGG 57.787 39.130 0.00 0.00 33.42 3.95
4021 4450 4.040217 TGTCATCAAAATGGACAAAAGGGG 59.960 41.667 0.00 0.00 33.42 4.79
4022 4451 4.283212 GTCATCAAAATGGACAAAAGGGGA 59.717 41.667 0.00 0.00 33.42 4.81
4023 4452 5.046376 GTCATCAAAATGGACAAAAGGGGAT 60.046 40.000 0.00 0.00 33.42 3.85
4024 4453 4.888326 TCAAAATGGACAAAAGGGGATG 57.112 40.909 0.00 0.00 0.00 3.51
4025 4454 4.230455 TCAAAATGGACAAAAGGGGATGT 58.770 39.130 0.00 0.00 0.00 3.06
4026 4455 5.398236 TCAAAATGGACAAAAGGGGATGTA 58.602 37.500 0.00 0.00 0.00 2.29
4027 4456 6.022315 TCAAAATGGACAAAAGGGGATGTAT 58.978 36.000 0.00 0.00 0.00 2.29
4028 4457 6.154363 TCAAAATGGACAAAAGGGGATGTATC 59.846 38.462 0.00 0.00 0.00 2.24
4029 4458 5.472301 AATGGACAAAAGGGGATGTATCT 57.528 39.130 0.00 0.00 0.00 1.98
4030 4459 6.590656 AATGGACAAAAGGGGATGTATCTA 57.409 37.500 0.00 0.00 0.00 1.98
4031 4460 5.630415 TGGACAAAAGGGGATGTATCTAG 57.370 43.478 0.00 0.00 0.00 2.43
4032 4461 5.285401 TGGACAAAAGGGGATGTATCTAGA 58.715 41.667 0.00 0.00 0.00 2.43
4033 4462 5.729229 TGGACAAAAGGGGATGTATCTAGAA 59.271 40.000 0.00 0.00 0.00 2.10
4034 4463 6.056236 GGACAAAAGGGGATGTATCTAGAAC 58.944 44.000 0.00 0.00 0.00 3.01
4035 4464 6.126739 GGACAAAAGGGGATGTATCTAGAACT 60.127 42.308 0.00 0.00 0.00 3.01
4036 4465 7.070821 GGACAAAAGGGGATGTATCTAGAACTA 59.929 40.741 0.00 0.00 0.00 2.24
4037 4466 8.388656 ACAAAAGGGGATGTATCTAGAACTAA 57.611 34.615 0.00 0.00 0.00 2.24
4038 4467 8.832735 ACAAAAGGGGATGTATCTAGAACTAAA 58.167 33.333 0.00 0.00 0.00 1.85
4039 4468 9.681062 CAAAAGGGGATGTATCTAGAACTAAAA 57.319 33.333 0.00 0.00 0.00 1.52
4043 4472 9.670442 AGGGGATGTATCTAGAACTAAAATACA 57.330 33.333 0.00 13.81 37.26 2.29
4059 4488 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
4067 4496 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
4073 4502 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
4076 4505 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
4077 4506 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
4078 4507 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
4079 4508 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
4080 4509 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
4081 4510 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
4088 4517 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
4089 4518 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
4090 4519 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
4091 4520 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4092 4521 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4093 4522 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4094 4523 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4095 4524 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4096 4525 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4097 4526 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4098 4527 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4099 4528 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4137 4577 9.696917 GTTACATTTGAGACATCCAGAAAAATT 57.303 29.630 0.00 0.00 0.00 1.82
4176 4616 6.828502 TCGACATATGCTTAACTGAATCAC 57.171 37.500 1.58 0.00 0.00 3.06
4342 4784 5.947443 AGATTGCTTGATAGAACAAAGCAC 58.053 37.500 8.71 0.00 35.49 4.40
4513 4955 2.618053 CCTACTTTGGGCTTCTGTACG 58.382 52.381 0.00 0.00 0.00 3.67
4767 5209 2.156051 GACCACTCCCCACAGACGAC 62.156 65.000 0.00 0.00 0.00 4.34
4957 5399 9.991906 TTAGTAGAGTAATACTTTTGTGCTTGT 57.008 29.630 0.00 0.00 37.24 3.16
5132 5574 5.189342 ACAGAGGATGACTGATCTGAACATT 59.811 40.000 6.60 0.00 41.35 2.71
5174 5616 0.947660 GTTTTCCCACCGTCCGAGAC 60.948 60.000 0.00 0.00 0.00 3.36
5218 5661 5.884792 CAGAAGCAGAGAAGGTTTCCAATAT 59.115 40.000 0.00 0.00 0.00 1.28
5220 5663 5.184892 AGCAGAGAAGGTTTCCAATATGT 57.815 39.130 0.00 0.00 0.00 2.29
5221 5664 5.574188 AGCAGAGAAGGTTTCCAATATGTT 58.426 37.500 0.00 0.00 0.00 2.71
5222 5665 5.649831 AGCAGAGAAGGTTTCCAATATGTTC 59.350 40.000 0.00 0.00 0.00 3.18
5223 5666 5.447818 GCAGAGAAGGTTTCCAATATGTTCG 60.448 44.000 0.00 0.00 0.00 3.95
5224 5667 5.065218 CAGAGAAGGTTTCCAATATGTTCGG 59.935 44.000 0.00 0.00 0.00 4.30
5225 5668 3.694566 AGAAGGTTTCCAATATGTTCGGC 59.305 43.478 0.00 0.00 0.00 5.54
5226 5669 2.014128 AGGTTTCCAATATGTTCGGCG 58.986 47.619 0.00 0.00 0.00 6.46
5227 5670 1.064952 GGTTTCCAATATGTTCGGCGG 59.935 52.381 7.21 0.00 0.00 6.13
5228 5671 2.011222 GTTTCCAATATGTTCGGCGGA 58.989 47.619 7.21 0.00 0.00 5.54
5229 5672 1.948104 TTCCAATATGTTCGGCGGAG 58.052 50.000 7.21 0.00 0.00 4.63
5230 5673 0.105964 TCCAATATGTTCGGCGGAGG 59.894 55.000 7.21 0.00 0.00 4.30
5254 5697 1.373570 GAGTTTGCGCTGCCTCTTAT 58.626 50.000 9.73 0.00 0.00 1.73
5255 5698 1.063174 GAGTTTGCGCTGCCTCTTATG 59.937 52.381 9.73 0.00 0.00 1.90
5367 5811 3.352648 CCCTGGATTGAACGGTATGTTT 58.647 45.455 0.00 0.00 42.09 2.83
5368 5812 3.128589 CCCTGGATTGAACGGTATGTTTG 59.871 47.826 0.00 0.00 42.09 2.93
5412 5856 0.961019 GTTTTGTTACCCCGGTTCCC 59.039 55.000 0.00 0.00 0.00 3.97
5577 6021 1.220749 GCTGTACGAGCCAATGGGA 59.779 57.895 0.00 0.00 42.54 4.37
5592 6036 8.409358 AGCCAATGGGACTGAAATATTATTAC 57.591 34.615 0.00 0.00 35.59 1.89
5610 6054 1.903404 CGGGCTTTGAGTTTGGCCT 60.903 57.895 3.32 0.00 43.62 5.19
5622 6066 5.385198 TGAGTTTGGCCTGAAGATTTAACT 58.615 37.500 3.32 0.00 0.00 2.24
5627 6071 7.710907 AGTTTGGCCTGAAGATTTAACTTTTTC 59.289 33.333 3.32 0.00 0.00 2.29
5686 6133 9.791820 TGAAATATACTCTTGCATTTTCACATG 57.208 29.630 0.00 0.00 0.00 3.21
5698 6145 5.387342 GCATTTTCACATGAGTTACAAACGC 60.387 40.000 0.00 0.00 36.23 4.84
5726 6322 8.019769 ACAAGCTCTAAGAAAAAGACGATTAC 57.980 34.615 0.00 0.00 0.00 1.89
5729 6325 8.468720 AGCTCTAAGAAAAAGACGATTACTTC 57.531 34.615 0.00 0.00 0.00 3.01
5755 6351 9.138062 CAATAAAGATGACATCTATCTCTTCGG 57.862 37.037 18.24 0.00 39.08 4.30
5757 6353 5.957842 AGATGACATCTATCTCTTCGGTC 57.042 43.478 16.51 0.00 38.00 4.79
5768 6364 5.578005 ATCTCTTCGGTCGTTTCAAGATA 57.422 39.130 0.00 0.00 0.00 1.98
5780 6376 8.718734 GGTCGTTTCAAGATATAGTTTGAACTT 58.281 33.333 11.78 0.00 41.51 2.66
5782 6378 9.483916 TCGTTTCAAGATATAGTTTGAACTTGA 57.516 29.630 11.78 0.00 41.51 3.02
5794 7622 5.069516 AGTTTGAACTTGAATCAAGCACCAT 59.930 36.000 21.69 4.49 44.43 3.55
5826 7654 4.726825 AGAGAAATACCCCCATCAAGCTTA 59.273 41.667 0.00 0.00 0.00 3.09
5857 7693 2.504175 TGAACTTCCCGGGAAAGATAGG 59.496 50.000 34.78 24.14 33.34 2.57
5862 7698 1.835531 TCCCGGGAAAGATAGGAACAC 59.164 52.381 24.50 0.00 0.00 3.32
5868 7704 4.322801 CGGGAAAGATAGGAACACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
5884 7720 0.307760 GTCTCGTTGCCTGTTGTTGG 59.692 55.000 0.00 0.00 0.00 3.77
5896 7732 4.379499 GCCTGTTGTTGGAATAGTAGCAAC 60.379 45.833 0.00 0.00 37.36 4.17
5897 7733 4.759693 CCTGTTGTTGGAATAGTAGCAACA 59.240 41.667 0.00 0.00 42.23 3.33
5947 7783 8.247562 AGAAGCTTATATATGTACTGTAGCTGC 58.752 37.037 0.00 0.00 37.74 5.25
5952 7788 2.586258 ATGTACTGTAGCTGCCGAAG 57.414 50.000 0.00 0.00 0.00 3.79
5960 7796 0.321564 TAGCTGCCGAAGTGCATTGT 60.322 50.000 0.00 0.00 41.16 2.71
6005 7841 6.112734 TGGTCATAATCATACAGTCCAACAC 58.887 40.000 0.00 0.00 0.00 3.32
6015 7851 2.832129 ACAGTCCAACACATCGACCTAT 59.168 45.455 0.00 0.00 0.00 2.57
6045 7881 7.473027 TTTACTAAAGTGAAAGGTCAGAACG 57.527 36.000 0.00 0.00 33.27 3.95
6049 7885 2.639065 AGTGAAAGGTCAGAACGCAAA 58.361 42.857 0.00 0.00 33.27 3.68
6055 7891 2.088423 AGGTCAGAACGCAAAACACAA 58.912 42.857 0.00 0.00 0.00 3.33
6067 7903 3.734902 GCAAAACACAAGGAACTGACTGG 60.735 47.826 0.00 0.00 40.86 4.00
6074 7910 2.370189 CAAGGAACTGACTGGAAGAGGT 59.630 50.000 0.00 0.00 40.86 3.85
6075 7911 1.974236 AGGAACTGACTGGAAGAGGTG 59.026 52.381 0.00 0.00 37.18 4.00
6076 7912 1.002544 GGAACTGACTGGAAGAGGTGG 59.997 57.143 0.00 0.00 37.43 4.61
6077 7913 1.002544 GAACTGACTGGAAGAGGTGGG 59.997 57.143 0.00 0.00 37.43 4.61
6078 7914 1.298014 CTGACTGGAAGAGGTGGGC 59.702 63.158 0.00 0.00 37.43 5.36
6079 7915 1.461268 TGACTGGAAGAGGTGGGCA 60.461 57.895 0.00 0.00 37.43 5.36
6080 7916 1.298014 GACTGGAAGAGGTGGGCAG 59.702 63.158 0.00 0.00 37.43 4.85
6081 7917 2.045536 CTGGAAGAGGTGGGCAGC 60.046 66.667 0.00 0.00 34.07 5.25
6082 7918 2.853542 TGGAAGAGGTGGGCAGCA 60.854 61.111 0.00 0.00 0.00 4.41
6083 7919 2.416107 CTGGAAGAGGTGGGCAGCAA 62.416 60.000 0.00 0.00 34.07 3.91
6084 7920 1.000396 GGAAGAGGTGGGCAGCAAT 60.000 57.895 0.00 0.00 0.00 3.56
6085 7921 1.318158 GGAAGAGGTGGGCAGCAATG 61.318 60.000 0.00 0.00 0.00 2.82
6086 7922 1.941999 GAAGAGGTGGGCAGCAATGC 61.942 60.000 0.00 0.00 0.00 3.56
6087 7923 2.677524 GAGGTGGGCAGCAATGCA 60.678 61.111 8.35 0.00 36.33 3.96
6088 7924 2.993264 AGGTGGGCAGCAATGCAC 60.993 61.111 8.35 0.00 39.00 4.57
6091 7927 3.304721 TGGGCAGCAATGCACACC 61.305 61.111 8.35 6.57 44.12 4.16
6092 7928 3.304721 GGGCAGCAATGCACACCA 61.305 61.111 8.35 0.00 38.28 4.17
6093 7929 2.735883 GGCAGCAATGCACACCAA 59.264 55.556 8.35 0.00 36.33 3.67
6094 7930 1.373748 GGCAGCAATGCACACCAAG 60.374 57.895 8.35 0.00 36.33 3.61
6095 7931 1.364901 GCAGCAATGCACACCAAGT 59.635 52.632 8.35 0.00 34.41 3.16
6096 7932 0.597568 GCAGCAATGCACACCAAGTA 59.402 50.000 8.35 0.00 34.41 2.24
6097 7933 1.666888 GCAGCAATGCACACCAAGTAC 60.667 52.381 8.35 0.00 34.41 2.73
6098 7934 0.874390 AGCAATGCACACCAAGTACG 59.126 50.000 8.35 0.00 0.00 3.67
6099 7935 0.591170 GCAATGCACACCAAGTACGT 59.409 50.000 0.00 0.00 0.00 3.57
6100 7936 1.801771 GCAATGCACACCAAGTACGTA 59.198 47.619 0.00 0.00 0.00 3.57
6101 7937 2.412325 GCAATGCACACCAAGTACGTAC 60.412 50.000 18.10 18.10 0.00 3.67
6102 7938 2.803386 CAATGCACACCAAGTACGTACA 59.197 45.455 26.55 3.89 0.00 2.90
6103 7939 2.823924 TGCACACCAAGTACGTACAT 57.176 45.000 26.55 13.27 0.00 2.29
6104 7940 2.679450 TGCACACCAAGTACGTACATC 58.321 47.619 26.55 0.70 0.00 3.06
6105 7941 2.036089 TGCACACCAAGTACGTACATCA 59.964 45.455 26.55 6.12 0.00 3.07
6106 7942 2.666508 GCACACCAAGTACGTACATCAG 59.333 50.000 26.55 14.45 0.00 2.90
6107 7943 3.859627 GCACACCAAGTACGTACATCAGT 60.860 47.826 26.55 15.05 0.00 3.41
6108 7944 3.673338 CACACCAAGTACGTACATCAGTG 59.327 47.826 26.55 25.23 0.00 3.66
6109 7945 3.570975 ACACCAAGTACGTACATCAGTGA 59.429 43.478 28.98 0.00 0.00 3.41
6110 7946 4.038282 ACACCAAGTACGTACATCAGTGAA 59.962 41.667 28.98 0.00 0.00 3.18
6111 7947 4.986034 CACCAAGTACGTACATCAGTGAAA 59.014 41.667 26.55 0.00 0.00 2.69
6112 7948 5.464057 CACCAAGTACGTACATCAGTGAAAA 59.536 40.000 26.55 0.00 0.00 2.29
6113 7949 5.694910 ACCAAGTACGTACATCAGTGAAAAG 59.305 40.000 26.55 0.79 0.00 2.27
6114 7950 5.694910 CCAAGTACGTACATCAGTGAAAAGT 59.305 40.000 26.55 0.00 0.00 2.66
6115 7951 6.128902 CCAAGTACGTACATCAGTGAAAAGTC 60.129 42.308 26.55 0.00 0.00 3.01
6116 7952 6.080648 AGTACGTACATCAGTGAAAAGTCA 57.919 37.500 26.55 0.00 0.00 3.41
6117 7953 6.150318 AGTACGTACATCAGTGAAAAGTCAG 58.850 40.000 26.55 0.00 33.27 3.51
6118 7954 3.741344 ACGTACATCAGTGAAAAGTCAGC 59.259 43.478 0.00 0.00 33.27 4.26
6119 7955 3.181540 CGTACATCAGTGAAAAGTCAGCG 60.182 47.826 0.00 0.02 33.27 5.18
6120 7956 3.111853 ACATCAGTGAAAAGTCAGCGA 57.888 42.857 0.00 0.00 33.27 4.93
6121 7957 3.466836 ACATCAGTGAAAAGTCAGCGAA 58.533 40.909 0.00 0.00 33.27 4.70
6122 7958 3.876914 ACATCAGTGAAAAGTCAGCGAAA 59.123 39.130 0.00 0.00 33.27 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.980805 TTGTCGCCACCAGTCGCC 62.981 66.667 0.00 0.00 0.00 5.54
11 12 2.742372 ATTGTCGCCACCAGTCGC 60.742 61.111 0.00 0.00 0.00 5.19
12 13 2.390599 CCATTGTCGCCACCAGTCG 61.391 63.158 0.00 0.00 0.00 4.18
13 14 1.298859 GACCATTGTCGCCACCAGTC 61.299 60.000 0.00 0.00 0.00 3.51
14 15 1.302511 GACCATTGTCGCCACCAGT 60.303 57.895 0.00 0.00 0.00 4.00
15 16 2.040544 GGACCATTGTCGCCACCAG 61.041 63.158 0.00 0.00 42.73 4.00
16 17 2.033448 GGACCATTGTCGCCACCA 59.967 61.111 0.00 0.00 42.73 4.17
17 18 1.378514 ATGGACCATTGTCGCCACC 60.379 57.895 0.00 0.00 42.73 4.61
18 19 1.656818 CCATGGACCATTGTCGCCAC 61.657 60.000 5.56 0.00 42.73 5.01
19 20 1.378382 CCATGGACCATTGTCGCCA 60.378 57.895 5.56 0.00 42.73 5.69
33 34 6.705825 TCAAACATAATACATCGAGGTCCATG 59.294 38.462 5.75 11.10 0.00 3.66
99 100 4.206200 CGAAACAAATGTTCGTGAAAAGGG 59.794 41.667 0.00 0.00 37.25 3.95
100 101 4.796312 ACGAAACAAATGTTCGTGAAAAGG 59.204 37.500 11.04 0.00 38.91 3.11
107 108 6.089551 CAGATCTCTACGAAACAAATGTTCGT 59.910 38.462 15.48 15.48 41.18 3.85
112 113 5.784750 TGCAGATCTCTACGAAACAAATG 57.215 39.130 0.00 0.00 0.00 2.32
114 115 7.011389 CCATTATGCAGATCTCTACGAAACAAA 59.989 37.037 0.00 0.00 0.00 2.83
127 128 1.446907 CCCGAGCCATTATGCAGATC 58.553 55.000 0.00 0.00 0.00 2.75
271 273 5.231702 TGTGCACATTCATGATTCTTTTGG 58.768 37.500 17.42 0.00 0.00 3.28
273 275 6.643770 GTCTTGTGCACATTCATGATTCTTTT 59.356 34.615 22.39 0.00 0.00 2.27
277 279 5.050644 TGTCTTGTGCACATTCATGATTC 57.949 39.130 22.39 4.86 0.00 2.52
592 596 3.517100 TGAGTGAGATGAAGAAGGGGAAG 59.483 47.826 0.00 0.00 0.00 3.46
594 598 3.102972 CTGAGTGAGATGAAGAAGGGGA 58.897 50.000 0.00 0.00 0.00 4.81
616 620 3.893200 ACTAATCGAATATCCGGACACCA 59.107 43.478 6.12 0.00 0.00 4.17
617 621 4.235360 CACTAATCGAATATCCGGACACC 58.765 47.826 6.12 0.00 0.00 4.16
639 643 7.895975 ACTCGAAAACCACCTACTATAAAAC 57.104 36.000 0.00 0.00 0.00 2.43
645 649 9.632638 ATTATACTACTCGAAAACCACCTACTA 57.367 33.333 0.00 0.00 0.00 1.82
646 650 7.944729 TTATACTACTCGAAAACCACCTACT 57.055 36.000 0.00 0.00 0.00 2.57
649 653 9.760077 CAATATTATACTACTCGAAAACCACCT 57.240 33.333 0.00 0.00 0.00 4.00
728 750 5.025453 AGGGGTTATCTGTAAAACGTAGGA 58.975 41.667 0.00 0.00 0.00 2.94
729 751 5.105228 TGAGGGGTTATCTGTAAAACGTAGG 60.105 44.000 0.00 0.00 0.00 3.18
730 752 5.969423 TGAGGGGTTATCTGTAAAACGTAG 58.031 41.667 0.00 0.00 0.00 3.51
731 753 5.999205 TGAGGGGTTATCTGTAAAACGTA 57.001 39.130 0.00 0.00 0.00 3.57
732 754 4.895668 TGAGGGGTTATCTGTAAAACGT 57.104 40.909 0.00 0.00 0.00 3.99
733 755 4.814771 GGATGAGGGGTTATCTGTAAAACG 59.185 45.833 0.00 0.00 0.00 3.60
904 929 3.312697 GTGATTGGATTTTAGGTCCGCTC 59.687 47.826 0.00 0.00 38.64 5.03
908 933 3.296854 GGGGTGATTGGATTTTAGGTCC 58.703 50.000 0.00 0.00 36.26 4.46
953 978 1.271982 GGGTTTTGGGAGGAGGAGAAC 60.272 57.143 0.00 0.00 0.00 3.01
1074 1099 2.019951 GTCGCGCTTCGTGAGGAAA 61.020 57.895 5.56 0.00 46.84 3.13
1227 1252 3.948086 GAGCTCGTGGACGTCGGTG 62.948 68.421 9.92 1.13 40.80 4.94
1311 1336 0.179084 CATACTTGACCCACGCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
1668 1699 1.274728 CGCTCATAGATTGCCCTAGCT 59.725 52.381 0.00 0.00 40.80 3.32
1689 1720 2.746277 GGGTGCTCCGCGACAAAT 60.746 61.111 8.23 0.00 33.83 2.32
1713 1744 2.159170 TGCATATCGGATGAACGTGTCA 60.159 45.455 0.00 0.00 41.67 3.58
1947 1978 7.040961 CCAAATTGTTTCTCAAATGCCAAGAAT 60.041 33.333 0.00 0.00 39.62 2.40
1951 1982 5.296283 CACCAAATTGTTTCTCAAATGCCAA 59.704 36.000 0.00 0.00 39.62 4.52
1998 2029 0.546122 ATCTCCGCTTGCCCACAATA 59.454 50.000 0.00 0.00 34.61 1.90
2046 2077 2.492088 CCATGAGTCGTAGTTGAGTGGA 59.508 50.000 0.00 0.00 0.00 4.02
2157 2188 0.460459 GCCAGTACCGCTTCTCTTCC 60.460 60.000 0.00 0.00 0.00 3.46
2424 2456 2.924454 GCCCAGATAAAGCTCGATCTCG 60.924 54.545 7.24 2.34 41.45 4.04
2467 2499 7.332430 AGACCATTCGATGTATTTTTCGTACAA 59.668 33.333 0.00 0.00 35.84 2.41
2472 2504 5.293324 TGGAGACCATTCGATGTATTTTTCG 59.707 40.000 0.00 0.00 36.72 3.46
2589 2621 0.749454 GTGTATCAAGGGCTGGCTGG 60.749 60.000 0.00 0.00 0.00 4.85
2607 2639 5.726793 ACATACCTTCCATAGAACTTCAGGT 59.273 40.000 0.00 0.00 32.16 4.00
2638 2670 1.287425 GACCAATTAAGAGGACGGCG 58.713 55.000 4.80 4.80 0.00 6.46
2730 2762 6.648725 ACGTTAACATAGAACTTCATGAGC 57.351 37.500 6.39 0.00 0.00 4.26
2800 2832 8.404107 TGTGTCTATATACATCCGATTCAGAA 57.596 34.615 0.00 0.00 0.00 3.02
2819 2851 7.336931 AGTGAACAAACAGACTAAAATGTGTCT 59.663 33.333 0.00 0.00 43.45 3.41
2825 2857 9.736023 GAAATGAGTGAACAAACAGACTAAAAT 57.264 29.630 0.00 0.00 0.00 1.82
2856 2888 9.869757 TGGATATTTCAATATGGACTACATACG 57.130 33.333 0.00 0.00 44.41 3.06
2881 2913 9.277565 CTCCGTTCACAAATATAAGATGTTTTG 57.722 33.333 0.00 0.00 35.66 2.44
2889 2921 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
3296 3331 2.309162 ACTGTCTACTCTCTAGGTGGCA 59.691 50.000 0.00 0.00 0.00 4.92
3320 3355 2.415357 GGCGAAGATCGATCTCTGATCC 60.415 54.545 27.43 18.79 43.74 3.36
3338 3373 2.892334 CTCAACAACACACCCGGCG 61.892 63.158 0.00 0.00 0.00 6.46
3491 3531 8.299570 AGAAATAACAGATTCAGCGAAAACAAT 58.700 29.630 0.00 0.00 0.00 2.71
3495 3535 7.114811 GCAAAGAAATAACAGATTCAGCGAAAA 59.885 33.333 0.00 0.00 0.00 2.29
3500 3540 7.823149 AATGCAAAGAAATAACAGATTCAGC 57.177 32.000 0.00 0.00 0.00 4.26
3566 3606 6.603940 AGAGGCATGGTTTAAAAATGCTAA 57.396 33.333 25.03 0.00 44.83 3.09
3567 3607 6.210385 TGAAGAGGCATGGTTTAAAAATGCTA 59.790 34.615 25.03 10.81 44.83 3.49
3585 3625 2.109774 AGAGTGCAGAGGATGAAGAGG 58.890 52.381 0.00 0.00 0.00 3.69
3664 3705 4.424626 TCAACTATGTCGATTCTGAGCAC 58.575 43.478 0.00 0.00 0.00 4.40
3731 3772 2.461695 TGCTAGGGAGAAGACTGAAGG 58.538 52.381 0.00 0.00 0.00 3.46
3748 3789 0.251474 TCCATTGGCTCTGCTTTGCT 60.251 50.000 0.00 0.00 0.00 3.91
3768 3809 4.878397 AGTTGCTGACTGGACAAATATAGC 59.122 41.667 0.00 0.00 37.17 2.97
3851 4276 2.768253 CAGCACACTGGGTATTCTCA 57.232 50.000 0.00 0.00 40.48 3.27
3899 4325 9.308000 AGAATAAAAGGTCCATGTCATAAAACA 57.692 29.630 0.00 0.00 0.00 2.83
3966 4395 1.831736 ACGGAGGGAGTAACAAGGATG 59.168 52.381 0.00 0.00 0.00 3.51
3975 4404 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3976 4405 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3977 4406 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3978 4407 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3979 4408 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3980 4409 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3981 4410 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3982 4411 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3983 4412 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3984 4413 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3985 4414 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3986 4415 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3987 4416 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
3988 4417 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
3989 4418 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
3990 4419 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
3991 4420 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
3992 4421 9.480053 CTTTTGTCCATTTTGATGACAAGTATT 57.520 29.630 0.00 0.00 37.13 1.89
3993 4422 8.090214 CCTTTTGTCCATTTTGATGACAAGTAT 58.910 33.333 0.00 0.00 37.13 2.12
3994 4423 7.432869 CCTTTTGTCCATTTTGATGACAAGTA 58.567 34.615 0.00 0.00 37.13 2.24
3995 4424 6.282930 CCTTTTGTCCATTTTGATGACAAGT 58.717 36.000 0.00 0.00 37.13 3.16
3996 4425 5.697633 CCCTTTTGTCCATTTTGATGACAAG 59.302 40.000 0.00 0.00 37.13 3.16
3997 4426 5.454471 CCCCTTTTGTCCATTTTGATGACAA 60.454 40.000 0.00 0.00 34.47 3.18
3998 4427 4.040217 CCCCTTTTGTCCATTTTGATGACA 59.960 41.667 0.00 0.00 0.00 3.58
3999 4428 4.283212 TCCCCTTTTGTCCATTTTGATGAC 59.717 41.667 0.00 0.00 0.00 3.06
4000 4429 4.487804 TCCCCTTTTGTCCATTTTGATGA 58.512 39.130 0.00 0.00 0.00 2.92
4001 4430 4.888326 TCCCCTTTTGTCCATTTTGATG 57.112 40.909 0.00 0.00 0.00 3.07
4002 4431 4.845796 ACATCCCCTTTTGTCCATTTTGAT 59.154 37.500 0.00 0.00 0.00 2.57
4003 4432 4.230455 ACATCCCCTTTTGTCCATTTTGA 58.770 39.130 0.00 0.00 0.00 2.69
4004 4433 4.622260 ACATCCCCTTTTGTCCATTTTG 57.378 40.909 0.00 0.00 0.00 2.44
4005 4434 6.263754 AGATACATCCCCTTTTGTCCATTTT 58.736 36.000 0.00 0.00 0.00 1.82
4006 4435 5.842339 AGATACATCCCCTTTTGTCCATTT 58.158 37.500 0.00 0.00 0.00 2.32
4007 4436 5.472301 AGATACATCCCCTTTTGTCCATT 57.528 39.130 0.00 0.00 0.00 3.16
4008 4437 5.911178 TCTAGATACATCCCCTTTTGTCCAT 59.089 40.000 0.00 0.00 0.00 3.41
4009 4438 5.285401 TCTAGATACATCCCCTTTTGTCCA 58.715 41.667 0.00 0.00 0.00 4.02
4010 4439 5.888982 TCTAGATACATCCCCTTTTGTCC 57.111 43.478 0.00 0.00 0.00 4.02
4011 4440 6.890293 AGTTCTAGATACATCCCCTTTTGTC 58.110 40.000 0.00 0.00 0.00 3.18
4012 4441 6.893020 AGTTCTAGATACATCCCCTTTTGT 57.107 37.500 0.00 0.00 0.00 2.83
4013 4442 9.681062 TTTTAGTTCTAGATACATCCCCTTTTG 57.319 33.333 0.00 0.00 0.00 2.44
4017 4446 9.670442 TGTATTTTAGTTCTAGATACATCCCCT 57.330 33.333 0.00 0.00 30.60 4.79
4033 4462 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
4041 4470 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
4047 4476 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
4050 4479 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
4051 4480 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
4052 4481 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
4053 4482 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
4054 4483 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
4055 4484 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
4063 4492 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
4064 4493 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
4065 4494 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
4066 4495 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
4067 4496 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4068 4497 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4069 4498 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4070 4499 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4071 4500 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4072 4501 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4073 4502 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4074 4503 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4075 4504 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4076 4505 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4077 4506 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4078 4507 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4079 4508 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4080 4509 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4081 4510 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4082 4511 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4083 4512 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
4084 4513 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
4085 4514 1.351080 ATCTACTCCCTCCGTCCGGA 61.351 60.000 0.00 0.00 42.90 5.14
4086 4515 1.150992 ATCTACTCCCTCCGTCCGG 59.849 63.158 0.00 0.00 0.00 5.14
4087 4516 0.465824 ACATCTACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
4088 4517 1.777941 AACATCTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
4089 4518 4.341520 ACATTAACATCTACTCCCTCCGTC 59.658 45.833 0.00 0.00 0.00 4.79
4090 4519 4.287552 ACATTAACATCTACTCCCTCCGT 58.712 43.478 0.00 0.00 0.00 4.69
4091 4520 4.939052 ACATTAACATCTACTCCCTCCG 57.061 45.455 0.00 0.00 0.00 4.63
4092 4521 7.120923 TGTAACATTAACATCTACTCCCTCC 57.879 40.000 0.00 0.00 0.00 4.30
4093 4522 9.614792 AAATGTAACATTAACATCTACTCCCTC 57.385 33.333 0.00 0.00 36.56 4.30
4094 4523 9.396022 CAAATGTAACATTAACATCTACTCCCT 57.604 33.333 0.00 0.00 36.56 4.20
4095 4524 9.391006 TCAAATGTAACATTAACATCTACTCCC 57.609 33.333 0.00 0.00 36.56 4.30
4137 4577 7.484641 GCATATGTCGATTTTCTTAAAAGCACA 59.515 33.333 4.29 5.19 36.62 4.57
4176 4616 7.217906 AGACCTGGAAGTAAAAGACACTAAAG 58.782 38.462 0.00 0.00 0.00 1.85
4342 4784 4.201990 GCAAAGCTGATCCATACCTTCAAG 60.202 45.833 0.00 0.00 0.00 3.02
4522 4964 7.117523 GCACCATTAATTGCAAACTTGAACATA 59.882 33.333 1.71 0.00 38.68 2.29
4523 4965 6.073112 GCACCATTAATTGCAAACTTGAACAT 60.073 34.615 1.71 0.00 38.68 2.71
4524 4966 5.236047 GCACCATTAATTGCAAACTTGAACA 59.764 36.000 1.71 0.00 38.68 3.18
4525 4967 5.236047 TGCACCATTAATTGCAAACTTGAAC 59.764 36.000 11.51 0.00 45.65 3.18
4527 4969 4.953667 TGCACCATTAATTGCAAACTTGA 58.046 34.783 11.51 0.00 45.65 3.02
4767 5209 1.135972 GCATACGCAATATTGGAGCCG 60.136 52.381 17.02 13.37 38.36 5.52
4957 5399 9.693739 TCAGTATATTTCTAAATTGCTGGGAAA 57.306 29.630 11.63 0.00 0.00 3.13
5132 5574 2.009681 TCACAACAGGTAGCCTCTCA 57.990 50.000 0.00 0.00 0.00 3.27
5169 5611 2.202797 CATGGGGCACTCGTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
5223 5666 4.699522 AAACTCCACGCCTCCGCC 62.700 66.667 0.00 0.00 38.22 6.13
5224 5667 3.423154 CAAACTCCACGCCTCCGC 61.423 66.667 0.00 0.00 38.22 5.54
5225 5668 3.423154 GCAAACTCCACGCCTCCG 61.423 66.667 0.00 0.00 41.14 4.63
5226 5669 3.423154 CGCAAACTCCACGCCTCC 61.423 66.667 0.00 0.00 0.00 4.30
5227 5670 4.090057 GCGCAAACTCCACGCCTC 62.090 66.667 0.30 0.00 46.63 4.70
5231 5674 4.389576 GGCAGCGCAAACTCCACG 62.390 66.667 11.47 0.00 0.00 4.94
5232 5675 2.970974 GAGGCAGCGCAAACTCCAC 61.971 63.158 11.47 0.00 0.00 4.02
5233 5676 2.669569 GAGGCAGCGCAAACTCCA 60.670 61.111 11.47 0.00 0.00 3.86
5234 5677 0.673644 TAAGAGGCAGCGCAAACTCC 60.674 55.000 11.47 2.45 0.00 3.85
5235 5678 1.063174 CATAAGAGGCAGCGCAAACTC 59.937 52.381 11.47 13.60 0.00 3.01
5236 5679 1.089920 CATAAGAGGCAGCGCAAACT 58.910 50.000 11.47 3.31 0.00 2.66
5237 5680 0.524180 GCATAAGAGGCAGCGCAAAC 60.524 55.000 11.47 0.00 0.00 2.93
5238 5681 0.677731 AGCATAAGAGGCAGCGCAAA 60.678 50.000 11.47 0.00 0.00 3.68
5367 5811 7.393234 CCAAGATAAATTGACTCCTAACAACCA 59.607 37.037 0.00 0.00 31.55 3.67
5368 5812 7.393515 ACCAAGATAAATTGACTCCTAACAACC 59.606 37.037 0.00 0.00 31.55 3.77
5571 6015 6.433093 GCCCGTAATAATATTTCAGTCCCATT 59.567 38.462 0.00 0.00 0.00 3.16
5577 6021 7.773690 ACTCAAAGCCCGTAATAATATTTCAGT 59.226 33.333 0.00 0.00 0.00 3.41
5592 6036 2.650778 GGCCAAACTCAAAGCCCG 59.349 61.111 0.00 0.00 39.60 6.13
5672 6119 6.198029 CGTTTGTAACTCATGTGAAAATGCAA 59.802 34.615 0.94 0.00 0.00 4.08
5698 6145 7.639162 TCGTCTTTTTCTTAGAGCTTGTAAG 57.361 36.000 9.51 9.51 0.00 2.34
5729 6325 9.138062 CCGAAGAGATAGATGTCATCTTTATTG 57.862 37.037 20.27 6.01 40.76 1.90
5733 6329 6.514212 CGACCGAAGAGATAGATGTCATCTTT 60.514 42.308 20.27 12.77 40.76 2.52
5738 6334 3.542648 ACGACCGAAGAGATAGATGTCA 58.457 45.455 0.00 0.00 0.00 3.58
5739 6335 4.555348 AACGACCGAAGAGATAGATGTC 57.445 45.455 0.00 0.00 0.00 3.06
5746 6342 3.936372 TCTTGAAACGACCGAAGAGAT 57.064 42.857 0.00 0.00 0.00 2.75
5748 6344 6.496571 ACTATATCTTGAAACGACCGAAGAG 58.503 40.000 0.00 0.00 0.00 2.85
5753 6349 6.880822 TCAAACTATATCTTGAAACGACCG 57.119 37.500 0.00 0.00 0.00 4.79
5755 6351 9.530129 CAAGTTCAAACTATATCTTGAAACGAC 57.470 33.333 9.70 1.80 41.79 4.34
5768 6364 6.265196 TGGTGCTTGATTCAAGTTCAAACTAT 59.735 34.615 23.66 0.00 42.77 2.12
5780 6376 7.337938 TCTGATTAACTATGGTGCTTGATTCA 58.662 34.615 0.00 0.00 0.00 2.57
5782 6378 7.568349 TCTCTGATTAACTATGGTGCTTGATT 58.432 34.615 0.00 0.00 0.00 2.57
5784 6380 6.544928 TCTCTGATTAACTATGGTGCTTGA 57.455 37.500 0.00 0.00 0.00 3.02
5788 7616 7.173390 GGGTATTTCTCTGATTAACTATGGTGC 59.827 40.741 0.00 0.00 0.00 5.01
5794 7622 7.570982 TGATGGGGGTATTTCTCTGATTAACTA 59.429 37.037 0.00 0.00 0.00 2.24
5826 7654 1.066143 CGGGAAGTTCACACCAGCTAT 60.066 52.381 5.85 0.00 0.00 2.97
5834 7670 1.133363 TCTTTCCCGGGAAGTTCACA 58.867 50.000 33.64 18.52 35.38 3.58
5857 7693 1.261619 CAGGCAACGAGACAAGTGTTC 59.738 52.381 0.00 0.00 46.39 3.18
5862 7698 1.299541 ACAACAGGCAACGAGACAAG 58.700 50.000 0.00 0.00 46.39 3.16
5868 7704 1.686355 ATTCCAACAACAGGCAACGA 58.314 45.000 0.00 0.00 46.39 3.85
5884 7720 6.972901 GGCCAATTTAGTTGTTGCTACTATTC 59.027 38.462 0.00 0.00 36.01 1.75
5896 7732 2.947448 GCCTCTGGCCAATTTAGTTG 57.053 50.000 7.01 0.00 44.06 3.16
5935 7771 1.630148 CACTTCGGCAGCTACAGTAC 58.370 55.000 0.00 0.00 0.00 2.73
5936 7772 0.108804 GCACTTCGGCAGCTACAGTA 60.109 55.000 0.00 0.00 0.00 2.74
5947 7783 2.930040 ACGAGAATACAATGCACTTCGG 59.070 45.455 0.00 0.00 0.00 4.30
5952 7788 3.171277 GGCAAACGAGAATACAATGCAC 58.829 45.455 0.00 0.00 34.14 4.57
5960 7796 1.003118 ACTGGCTGGCAAACGAGAATA 59.997 47.619 5.14 0.00 0.00 1.75
6026 7862 3.799366 TGCGTTCTGACCTTTCACTTTA 58.201 40.909 0.00 0.00 0.00 1.85
6027 7863 2.639065 TGCGTTCTGACCTTTCACTTT 58.361 42.857 0.00 0.00 0.00 2.66
6040 7876 2.752903 AGTTCCTTGTGTTTTGCGTTCT 59.247 40.909 0.00 0.00 0.00 3.01
6045 7881 3.438360 CAGTCAGTTCCTTGTGTTTTGC 58.562 45.455 0.00 0.00 0.00 3.68
6049 7885 3.199946 TCTTCCAGTCAGTTCCTTGTGTT 59.800 43.478 0.00 0.00 0.00 3.32
6055 7891 1.974236 CACCTCTTCCAGTCAGTTCCT 59.026 52.381 0.00 0.00 0.00 3.36
6067 7903 1.941999 GCATTGCTGCCCACCTCTTC 61.942 60.000 0.16 0.00 42.88 2.87
6078 7914 1.400113 CGTACTTGGTGTGCATTGCTG 60.400 52.381 10.49 0.00 0.00 4.41
6079 7915 0.874390 CGTACTTGGTGTGCATTGCT 59.126 50.000 10.49 0.00 0.00 3.91
6080 7916 0.591170 ACGTACTTGGTGTGCATTGC 59.409 50.000 0.46 0.46 0.00 3.56
6081 7917 2.803386 TGTACGTACTTGGTGTGCATTG 59.197 45.455 25.12 0.00 0.00 2.82
6082 7918 3.114668 TGTACGTACTTGGTGTGCATT 57.885 42.857 25.12 0.00 0.00 3.56
6083 7919 2.823924 TGTACGTACTTGGTGTGCAT 57.176 45.000 25.12 0.00 0.00 3.96
6084 7920 2.036089 TGATGTACGTACTTGGTGTGCA 59.964 45.455 25.12 10.10 32.88 4.57
6085 7921 2.666508 CTGATGTACGTACTTGGTGTGC 59.333 50.000 25.12 7.80 0.00 4.57
6086 7922 3.673338 CACTGATGTACGTACTTGGTGTG 59.327 47.826 25.12 20.49 0.00 3.82
6087 7923 3.570975 TCACTGATGTACGTACTTGGTGT 59.429 43.478 25.12 14.49 0.00 4.16
6088 7924 4.168922 TCACTGATGTACGTACTTGGTG 57.831 45.455 25.12 24.02 0.00 4.17
6089 7925 4.859304 TTCACTGATGTACGTACTTGGT 57.141 40.909 25.12 16.10 0.00 3.67
6090 7926 5.694910 ACTTTTCACTGATGTACGTACTTGG 59.305 40.000 25.12 15.55 0.00 3.61
6091 7927 6.419710 TGACTTTTCACTGATGTACGTACTTG 59.580 38.462 25.12 14.55 0.00 3.16
6092 7928 6.509656 TGACTTTTCACTGATGTACGTACTT 58.490 36.000 25.12 19.42 0.00 2.24
6093 7929 6.080648 TGACTTTTCACTGATGTACGTACT 57.919 37.500 25.12 11.72 0.00 2.73
6094 7930 5.164080 GCTGACTTTTCACTGATGTACGTAC 60.164 44.000 18.90 18.90 0.00 3.67
6095 7931 4.921515 GCTGACTTTTCACTGATGTACGTA 59.078 41.667 0.00 0.00 0.00 3.57
6096 7932 3.741344 GCTGACTTTTCACTGATGTACGT 59.259 43.478 0.00 0.00 0.00 3.57
6097 7933 3.181540 CGCTGACTTTTCACTGATGTACG 60.182 47.826 0.00 0.00 0.00 3.67
6098 7934 3.987868 TCGCTGACTTTTCACTGATGTAC 59.012 43.478 0.00 0.00 0.00 2.90
6099 7935 4.251543 TCGCTGACTTTTCACTGATGTA 57.748 40.909 0.00 0.00 0.00 2.29
6100 7936 3.111853 TCGCTGACTTTTCACTGATGT 57.888 42.857 0.00 0.00 0.00 3.06
6101 7937 4.472691 TTTCGCTGACTTTTCACTGATG 57.527 40.909 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.