Multiple sequence alignment - TraesCS7B01G276400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G276400 chr7B 100.000 5402 0 0 987 6388 505575308 505569907 0.000000e+00 9976.0
1 TraesCS7B01G276400 chr7B 100.000 468 0 0 1 468 505576294 505575827 0.000000e+00 865.0
2 TraesCS7B01G276400 chr7D 94.660 4738 149 38 1098 5795 479750619 479745946 0.000000e+00 7252.0
3 TraesCS7B01G276400 chr7D 94.504 746 31 3 5643 6388 479744405 479743670 0.000000e+00 1142.0
4 TraesCS7B01G276400 chr7D 94.130 460 18 2 5848 6307 479745948 479745498 0.000000e+00 691.0
5 TraesCS7B01G276400 chr7D 92.384 302 21 1 4 303 479766650 479766349 4.580000e-116 429.0
6 TraesCS7B01G276400 chr7D 96.133 181 5 2 289 468 479751385 479751206 1.740000e-75 294.0
7 TraesCS7B01G276400 chr7D 98.734 79 1 0 987 1065 479751126 479751048 2.400000e-29 141.0
8 TraesCS7B01G276400 chr7D 88.660 97 6 4 3865 3959 479747784 479747877 5.230000e-21 113.0
9 TraesCS7B01G276400 chr7A 89.137 1970 144 33 1486 3417 515002662 515004599 0.000000e+00 2388.0
10 TraesCS7B01G276400 chr7A 90.813 1698 111 22 4233 5915 515005386 515007053 0.000000e+00 2230.0
11 TraesCS7B01G276400 chr7A 89.918 367 27 5 3472 3828 515005017 515005383 1.250000e-126 464.0
12 TraesCS7B01G276400 chr7A 84.634 410 46 10 987 1387 515002102 515002503 6.000000e-105 392.0
13 TraesCS7B01G276400 chr7A 90.164 61 3 1 231 291 514997705 514997762 6.870000e-10 76.8
14 TraesCS7B01G276400 chr4A 83.111 225 34 2 5796 6018 519161813 519161591 1.090000e-47 202.0
15 TraesCS7B01G276400 chr1A 89.796 98 9 1 3862 3959 566218077 566218173 2.420000e-24 124.0
16 TraesCS7B01G276400 chr2D 91.111 90 7 1 3871 3960 440316106 440316018 3.130000e-23 121.0
17 TraesCS7B01G276400 chr2D 87.879 99 10 2 3865 3963 114517659 114517563 1.460000e-21 115.0
18 TraesCS7B01G276400 chr2B 91.111 90 7 1 3870 3959 74002921 74002833 3.130000e-23 121.0
19 TraesCS7B01G276400 chr2B 91.111 90 7 1 3871 3960 518041532 518041444 3.130000e-23 121.0
20 TraesCS7B01G276400 chr2B 87.879 99 10 2 3865 3963 164901471 164901375 1.460000e-21 115.0
21 TraesCS7B01G276400 chr5D 91.011 89 7 1 3871 3959 288354387 288354300 1.130000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G276400 chr7B 505569907 505576294 6387 True 5420.5 9976 100.0000 1 6388 2 chr7B.!!$R1 6387
1 TraesCS7B01G276400 chr7D 479743670 479751385 7715 True 1904.0 7252 95.6322 289 6388 5 chr7D.!!$R2 6099
2 TraesCS7B01G276400 chr7A 515002102 515007053 4951 False 1368.5 2388 88.6255 987 5915 4 chr7A.!!$F2 4928


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.111446 TGACCTGAAAATTGCCCGGA 59.889 50.000 0.73 0.0 0.00 5.14 F
30 31 0.112412 ACCTGAAAATTGCCCGGAGT 59.888 50.000 0.73 0.0 0.00 3.85 F
1170 1570 0.322098 AATTCGATTGGTGTGCGGGA 60.322 50.000 0.00 0.0 0.00 5.14 F
1506 2007 1.026182 TCATGGTCATTGCGCAGTCC 61.026 55.000 11.31 12.3 0.00 3.85 F
2886 3431 0.585838 CATGTGCACACGCTACAACA 59.414 50.000 24.37 0.0 39.64 3.33 F
3315 3887 1.419762 TGTGCCAGGCTTGTCTTAAGA 59.580 47.619 14.15 0.0 0.00 2.10 F
4912 5861 0.608640 GAGAACCCGCTCTCCTTTCA 59.391 55.000 0.00 0.0 36.60 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1328 1734 0.820226 TCAGAGCGCATCTTGCTAGT 59.180 50.000 11.47 0.00 44.18 2.57 R
1469 1970 1.132657 TGACCAACTCACTAAGGGGGA 60.133 52.381 0.00 0.00 0.00 4.81 R
2868 3413 0.867746 CTGTTGTAGCGTGTGCACAT 59.132 50.000 24.69 9.98 46.23 3.21 R
3172 3735 2.754472 GTGTACACACTGCATCTCACA 58.246 47.619 21.14 0.00 43.25 3.58 R
4051 4999 0.399454 CGGAGATCTCATGGGGCAAT 59.601 55.000 23.85 0.00 0.00 3.56 R
5276 6228 0.467844 TGCCCAAGAAAAGCTGCAGA 60.468 50.000 20.43 0.00 0.00 4.26 R
6018 8674 0.037590 TTCAAGGGTGCTATGCCGTT 59.962 50.000 0.00 0.00 34.82 4.44 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.981211 TCAAGCTTGACCTGAAAATTGC 58.019 40.909 25.16 0.00 31.01 3.56
24 25 3.062042 CAAGCTTGACCTGAAAATTGCC 58.938 45.455 22.31 0.00 0.00 4.52
25 26 1.620323 AGCTTGACCTGAAAATTGCCC 59.380 47.619 0.00 0.00 0.00 5.36
26 27 1.669795 GCTTGACCTGAAAATTGCCCG 60.670 52.381 0.00 0.00 0.00 6.13
27 28 0.965439 TTGACCTGAAAATTGCCCGG 59.035 50.000 0.00 0.00 0.00 5.73
28 29 0.111446 TGACCTGAAAATTGCCCGGA 59.889 50.000 0.73 0.00 0.00 5.14
29 30 0.811281 GACCTGAAAATTGCCCGGAG 59.189 55.000 0.73 0.00 0.00 4.63
30 31 0.112412 ACCTGAAAATTGCCCGGAGT 59.888 50.000 0.73 0.00 0.00 3.85
31 32 1.256812 CCTGAAAATTGCCCGGAGTT 58.743 50.000 0.73 0.00 0.00 3.01
32 33 1.202348 CCTGAAAATTGCCCGGAGTTC 59.798 52.381 0.73 0.00 0.00 3.01
33 34 2.162681 CTGAAAATTGCCCGGAGTTCT 58.837 47.619 0.73 0.00 0.00 3.01
34 35 3.343617 CTGAAAATTGCCCGGAGTTCTA 58.656 45.455 0.73 0.00 0.00 2.10
35 36 3.947834 CTGAAAATTGCCCGGAGTTCTAT 59.052 43.478 0.73 0.00 0.00 1.98
36 37 4.340617 TGAAAATTGCCCGGAGTTCTATT 58.659 39.130 0.73 0.00 0.00 1.73
37 38 5.502079 TGAAAATTGCCCGGAGTTCTATTA 58.498 37.500 0.73 0.00 0.00 0.98
38 39 6.126409 TGAAAATTGCCCGGAGTTCTATTAT 58.874 36.000 0.73 0.00 0.00 1.28
39 40 6.605594 TGAAAATTGCCCGGAGTTCTATTATT 59.394 34.615 0.73 0.00 0.00 1.40
40 41 7.123547 TGAAAATTGCCCGGAGTTCTATTATTT 59.876 33.333 0.73 0.00 0.00 1.40
41 42 7.418337 AAATTGCCCGGAGTTCTATTATTTT 57.582 32.000 0.73 0.00 0.00 1.82
42 43 7.418337 AATTGCCCGGAGTTCTATTATTTTT 57.582 32.000 0.73 0.00 0.00 1.94
43 44 8.528044 AATTGCCCGGAGTTCTATTATTTTTA 57.472 30.769 0.73 0.00 0.00 1.52
44 45 8.706322 ATTGCCCGGAGTTCTATTATTTTTAT 57.294 30.769 0.73 0.00 0.00 1.40
45 46 8.528044 TTGCCCGGAGTTCTATTATTTTTATT 57.472 30.769 0.73 0.00 0.00 1.40
46 47 9.629878 TTGCCCGGAGTTCTATTATTTTTATTA 57.370 29.630 0.73 0.00 0.00 0.98
47 48 9.059260 TGCCCGGAGTTCTATTATTTTTATTAC 57.941 33.333 0.73 0.00 0.00 1.89
48 49 9.281371 GCCCGGAGTTCTATTATTTTTATTACT 57.719 33.333 0.73 0.00 0.00 2.24
64 65 9.886132 TTTTTATTACTAAGTGATGAGTCTCCC 57.114 33.333 0.00 0.00 0.00 4.30
65 66 8.840200 TTTATTACTAAGTGATGAGTCTCCCT 57.160 34.615 0.00 0.00 0.00 4.20
66 67 6.969993 ATTACTAAGTGATGAGTCTCCCTC 57.030 41.667 0.00 0.00 40.89 4.30
77 78 5.470047 TGAGTCTCCCTCAGTAACTTTTC 57.530 43.478 0.00 0.00 45.34 2.29
78 79 4.899457 TGAGTCTCCCTCAGTAACTTTTCA 59.101 41.667 0.00 0.00 45.34 2.69
79 80 5.365605 TGAGTCTCCCTCAGTAACTTTTCAA 59.634 40.000 0.00 0.00 45.34 2.69
80 81 6.043243 TGAGTCTCCCTCAGTAACTTTTCAAT 59.957 38.462 0.00 0.00 45.34 2.57
81 82 6.842676 AGTCTCCCTCAGTAACTTTTCAATT 58.157 36.000 0.00 0.00 0.00 2.32
82 83 7.974504 AGTCTCCCTCAGTAACTTTTCAATTA 58.025 34.615 0.00 0.00 0.00 1.40
83 84 7.878644 AGTCTCCCTCAGTAACTTTTCAATTAC 59.121 37.037 0.00 0.00 0.00 1.89
84 85 7.660208 GTCTCCCTCAGTAACTTTTCAATTACA 59.340 37.037 0.00 0.00 34.36 2.41
85 86 8.215050 TCTCCCTCAGTAACTTTTCAATTACAA 58.785 33.333 0.00 0.00 34.36 2.41
86 87 8.391075 TCCCTCAGTAACTTTTCAATTACAAG 57.609 34.615 0.00 0.00 34.36 3.16
87 88 7.996644 TCCCTCAGTAACTTTTCAATTACAAGT 59.003 33.333 0.00 0.00 34.36 3.16
88 89 9.280174 CCCTCAGTAACTTTTCAATTACAAGTA 57.720 33.333 0.00 0.00 34.36 2.24
125 126 8.779354 ACACATAGAAACTTTCATTCTCTACC 57.221 34.615 4.34 0.00 38.13 3.18
126 127 8.375506 ACACATAGAAACTTTCATTCTCTACCA 58.624 33.333 4.34 0.00 38.13 3.25
127 128 9.388506 CACATAGAAACTTTCATTCTCTACCAT 57.611 33.333 4.34 0.00 38.13 3.55
128 129 9.388506 ACATAGAAACTTTCATTCTCTACCATG 57.611 33.333 4.34 0.00 38.13 3.66
129 130 9.388506 CATAGAAACTTTCATTCTCTACCATGT 57.611 33.333 4.34 0.00 38.13 3.21
130 131 7.913674 AGAAACTTTCATTCTCTACCATGTC 57.086 36.000 4.34 0.00 31.61 3.06
131 132 6.881602 AGAAACTTTCATTCTCTACCATGTCC 59.118 38.462 4.34 0.00 31.61 4.02
132 133 4.759782 ACTTTCATTCTCTACCATGTCCG 58.240 43.478 0.00 0.00 0.00 4.79
133 134 3.819564 TTCATTCTCTACCATGTCCGG 57.180 47.619 0.00 0.00 0.00 5.14
134 135 3.026707 TCATTCTCTACCATGTCCGGA 57.973 47.619 0.00 0.00 0.00 5.14
135 136 3.371034 TCATTCTCTACCATGTCCGGAA 58.629 45.455 5.23 0.00 0.00 4.30
136 137 3.384789 TCATTCTCTACCATGTCCGGAAG 59.615 47.826 5.23 0.00 0.00 3.46
137 138 2.820728 TCTCTACCATGTCCGGAAGA 57.179 50.000 5.23 2.89 0.00 2.87
138 139 3.314307 TCTCTACCATGTCCGGAAGAT 57.686 47.619 5.23 0.00 0.00 2.40
139 140 4.448720 TCTCTACCATGTCCGGAAGATA 57.551 45.455 5.23 0.00 0.00 1.98
140 141 4.999310 TCTCTACCATGTCCGGAAGATAT 58.001 43.478 5.23 0.00 0.00 1.63
141 142 6.135819 TCTCTACCATGTCCGGAAGATATA 57.864 41.667 5.23 0.00 0.00 0.86
142 143 6.732487 TCTCTACCATGTCCGGAAGATATAT 58.268 40.000 5.23 0.00 0.00 0.86
143 144 6.603599 TCTCTACCATGTCCGGAAGATATATG 59.396 42.308 5.23 4.50 0.00 1.78
144 145 6.253758 TCTACCATGTCCGGAAGATATATGT 58.746 40.000 5.23 0.00 0.00 2.29
145 146 5.152623 ACCATGTCCGGAAGATATATGTG 57.847 43.478 5.23 2.25 0.00 3.21
146 147 4.838423 ACCATGTCCGGAAGATATATGTGA 59.162 41.667 5.23 0.00 0.00 3.58
147 148 5.485353 ACCATGTCCGGAAGATATATGTGAT 59.515 40.000 5.23 0.00 0.00 3.06
148 149 5.814188 CCATGTCCGGAAGATATATGTGATG 59.186 44.000 5.23 0.00 0.00 3.07
149 150 6.401394 CATGTCCGGAAGATATATGTGATGT 58.599 40.000 5.23 0.00 0.00 3.06
150 151 6.419484 TGTCCGGAAGATATATGTGATGTT 57.581 37.500 5.23 0.00 0.00 2.71
151 152 6.826668 TGTCCGGAAGATATATGTGATGTTT 58.173 36.000 5.23 0.00 0.00 2.83
152 153 7.279615 TGTCCGGAAGATATATGTGATGTTTT 58.720 34.615 5.23 0.00 0.00 2.43
153 154 7.226523 TGTCCGGAAGATATATGTGATGTTTTG 59.773 37.037 5.23 0.00 0.00 2.44
154 155 7.441157 GTCCGGAAGATATATGTGATGTTTTGA 59.559 37.037 5.23 0.00 0.00 2.69
155 156 7.657354 TCCGGAAGATATATGTGATGTTTTGAG 59.343 37.037 0.00 0.00 0.00 3.02
156 157 7.095060 CCGGAAGATATATGTGATGTTTTGAGG 60.095 40.741 0.00 0.00 0.00 3.86
157 158 7.657354 CGGAAGATATATGTGATGTTTTGAGGA 59.343 37.037 0.00 0.00 0.00 3.71
158 159 8.997323 GGAAGATATATGTGATGTTTTGAGGAG 58.003 37.037 0.00 0.00 0.00 3.69
159 160 7.976135 AGATATATGTGATGTTTTGAGGAGC 57.024 36.000 0.00 0.00 0.00 4.70
160 161 7.512130 AGATATATGTGATGTTTTGAGGAGCA 58.488 34.615 0.00 0.00 0.00 4.26
161 162 5.824904 ATATGTGATGTTTTGAGGAGCAC 57.175 39.130 0.00 0.00 0.00 4.40
162 163 1.872952 TGTGATGTTTTGAGGAGCACG 59.127 47.619 0.00 0.00 0.00 5.34
163 164 2.143122 GTGATGTTTTGAGGAGCACGA 58.857 47.619 0.00 0.00 0.00 4.35
164 165 2.548057 GTGATGTTTTGAGGAGCACGAA 59.452 45.455 0.00 0.00 0.00 3.85
165 166 3.003275 GTGATGTTTTGAGGAGCACGAAA 59.997 43.478 0.00 0.00 0.00 3.46
166 167 3.629855 TGATGTTTTGAGGAGCACGAAAA 59.370 39.130 0.00 0.00 0.00 2.29
167 168 4.097135 TGATGTTTTGAGGAGCACGAAAAA 59.903 37.500 0.00 0.00 0.00 1.94
168 169 4.647424 TGTTTTGAGGAGCACGAAAAAT 57.353 36.364 0.00 0.00 0.00 1.82
169 170 4.358851 TGTTTTGAGGAGCACGAAAAATG 58.641 39.130 0.00 0.00 0.00 2.32
170 171 3.641437 TTTGAGGAGCACGAAAAATGG 57.359 42.857 0.00 0.00 0.00 3.16
171 172 2.559698 TGAGGAGCACGAAAAATGGA 57.440 45.000 0.00 0.00 0.00 3.41
172 173 2.857483 TGAGGAGCACGAAAAATGGAA 58.143 42.857 0.00 0.00 0.00 3.53
173 174 2.552315 TGAGGAGCACGAAAAATGGAAC 59.448 45.455 0.00 0.00 0.00 3.62
174 175 1.535462 AGGAGCACGAAAAATGGAACG 59.465 47.619 0.00 0.00 0.00 3.95
175 176 1.533731 GGAGCACGAAAAATGGAACGA 59.466 47.619 0.00 0.00 0.00 3.85
176 177 2.161609 GGAGCACGAAAAATGGAACGAT 59.838 45.455 0.00 0.00 0.00 3.73
177 178 3.417185 GAGCACGAAAAATGGAACGATC 58.583 45.455 0.00 0.00 0.00 3.69
178 179 3.074412 AGCACGAAAAATGGAACGATCT 58.926 40.909 0.00 0.00 0.00 2.75
179 180 3.502211 AGCACGAAAAATGGAACGATCTT 59.498 39.130 0.00 0.00 0.00 2.40
180 181 4.023193 AGCACGAAAAATGGAACGATCTTT 60.023 37.500 0.00 0.00 0.00 2.52
181 182 4.320953 GCACGAAAAATGGAACGATCTTTC 59.679 41.667 3.38 3.38 0.00 2.62
182 183 4.851558 CACGAAAAATGGAACGATCTTTCC 59.148 41.667 21.19 21.19 44.86 3.13
183 184 4.760204 ACGAAAAATGGAACGATCTTTCCT 59.240 37.500 26.22 12.85 44.89 3.36
184 185 5.240844 ACGAAAAATGGAACGATCTTTCCTT 59.759 36.000 26.22 19.39 44.89 3.36
185 186 5.795441 CGAAAAATGGAACGATCTTTCCTTC 59.205 40.000 26.22 20.28 44.89 3.46
186 187 6.348540 CGAAAAATGGAACGATCTTTCCTTCT 60.349 38.462 26.22 9.22 44.89 2.85
187 188 7.148474 CGAAAAATGGAACGATCTTTCCTTCTA 60.148 37.037 26.22 10.92 44.89 2.10
188 189 8.581253 AAAAATGGAACGATCTTTCCTTCTAT 57.419 30.769 26.22 12.49 44.89 1.98
189 190 8.581253 AAAATGGAACGATCTTTCCTTCTATT 57.419 30.769 26.22 16.71 44.89 1.73
190 191 7.559590 AATGGAACGATCTTTCCTTCTATTG 57.440 36.000 26.22 0.00 44.89 1.90
191 192 6.294361 TGGAACGATCTTTCCTTCTATTGA 57.706 37.500 26.22 6.02 44.89 2.57
192 193 6.106673 TGGAACGATCTTTCCTTCTATTGAC 58.893 40.000 26.22 2.50 44.89 3.18
193 194 5.524281 GGAACGATCTTTCCTTCTATTGACC 59.476 44.000 20.82 0.00 41.80 4.02
194 195 5.677319 ACGATCTTTCCTTCTATTGACCA 57.323 39.130 0.00 0.00 0.00 4.02
195 196 5.420409 ACGATCTTTCCTTCTATTGACCAC 58.580 41.667 0.00 0.00 0.00 4.16
196 197 4.811557 CGATCTTTCCTTCTATTGACCACC 59.188 45.833 0.00 0.00 0.00 4.61
197 198 5.626809 CGATCTTTCCTTCTATTGACCACCA 60.627 44.000 0.00 0.00 0.00 4.17
198 199 5.779241 TCTTTCCTTCTATTGACCACCAT 57.221 39.130 0.00 0.00 0.00 3.55
199 200 6.139679 TCTTTCCTTCTATTGACCACCATT 57.860 37.500 0.00 0.00 0.00 3.16
200 201 6.180472 TCTTTCCTTCTATTGACCACCATTC 58.820 40.000 0.00 0.00 0.00 2.67
201 202 4.503714 TCCTTCTATTGACCACCATTCC 57.496 45.455 0.00 0.00 0.00 3.01
202 203 3.849574 TCCTTCTATTGACCACCATTCCA 59.150 43.478 0.00 0.00 0.00 3.53
203 204 3.947834 CCTTCTATTGACCACCATTCCAC 59.052 47.826 0.00 0.00 0.00 4.02
204 205 4.567537 CCTTCTATTGACCACCATTCCACA 60.568 45.833 0.00 0.00 0.00 4.17
205 206 4.860802 TCTATTGACCACCATTCCACAT 57.139 40.909 0.00 0.00 0.00 3.21
206 207 4.780815 TCTATTGACCACCATTCCACATC 58.219 43.478 0.00 0.00 0.00 3.06
207 208 3.744940 ATTGACCACCATTCCACATCT 57.255 42.857 0.00 0.00 0.00 2.90
208 209 3.524095 TTGACCACCATTCCACATCTT 57.476 42.857 0.00 0.00 0.00 2.40
209 210 3.524095 TGACCACCATTCCACATCTTT 57.476 42.857 0.00 0.00 0.00 2.52
210 211 3.156293 TGACCACCATTCCACATCTTTG 58.844 45.455 0.00 0.00 0.00 2.77
211 212 3.157087 GACCACCATTCCACATCTTTGT 58.843 45.455 0.00 0.00 36.15 2.83
212 213 3.573967 GACCACCATTCCACATCTTTGTT 59.426 43.478 0.00 0.00 32.34 2.83
213 214 3.573967 ACCACCATTCCACATCTTTGTTC 59.426 43.478 0.00 0.00 32.34 3.18
214 215 3.828451 CCACCATTCCACATCTTTGTTCT 59.172 43.478 0.00 0.00 32.34 3.01
215 216 4.281688 CCACCATTCCACATCTTTGTTCTT 59.718 41.667 0.00 0.00 32.34 2.52
216 217 5.221501 CCACCATTCCACATCTTTGTTCTTT 60.222 40.000 0.00 0.00 32.34 2.52
217 218 6.015519 CCACCATTCCACATCTTTGTTCTTTA 60.016 38.462 0.00 0.00 32.34 1.85
218 219 7.309990 CCACCATTCCACATCTTTGTTCTTTAT 60.310 37.037 0.00 0.00 32.34 1.40
219 220 8.090214 CACCATTCCACATCTTTGTTCTTTATT 58.910 33.333 0.00 0.00 32.34 1.40
220 221 8.650490 ACCATTCCACATCTTTGTTCTTTATTT 58.350 29.630 0.00 0.00 32.34 1.40
221 222 9.492973 CCATTCCACATCTTTGTTCTTTATTTT 57.507 29.630 0.00 0.00 32.34 1.82
292 293 7.065120 TGACATCAAACCCATTTCTCAAAAT 57.935 32.000 0.00 0.00 35.43 1.82
311 312 7.284074 TCAAAATTCTTGTAGTGTTAGGTGGA 58.716 34.615 0.00 0.00 0.00 4.02
337 338 3.200165 GTCCTTAAGCCCACCTGTTCTAT 59.800 47.826 0.00 0.00 0.00 1.98
338 339 3.199946 TCCTTAAGCCCACCTGTTCTATG 59.800 47.826 0.00 0.00 0.00 2.23
1056 1058 4.254709 ACCAGCTCGCAGGCAACA 62.255 61.111 0.00 0.00 41.41 3.33
1072 1074 0.916809 AACACCCCCTAAATCCTCCG 59.083 55.000 0.00 0.00 0.00 4.63
1074 1076 2.076803 ACCCCCTAAATCCTCCGCC 61.077 63.158 0.00 0.00 0.00 6.13
1077 1079 2.830514 CCCTAAATCCTCCGCCCCC 61.831 68.421 0.00 0.00 0.00 5.40
1170 1570 0.322098 AATTCGATTGGTGTGCGGGA 60.322 50.000 0.00 0.00 0.00 5.14
1213 1613 4.577246 GCGCGGCAGAGGACTAGG 62.577 72.222 8.83 0.00 0.00 3.02
1259 1665 2.017783 CTGCGCGCAAATGCACTTT 61.018 52.632 35.50 0.00 42.21 2.66
1296 1702 2.396590 ACAACCGCGGTTCAGAATAT 57.603 45.000 39.38 15.40 36.00 1.28
1298 1704 3.078837 ACAACCGCGGTTCAGAATATTT 58.921 40.909 39.38 13.71 36.00 1.40
1362 1768 4.435386 GCGCTCTGATTCTCAGTTTTTCTC 60.435 45.833 0.00 0.00 44.58 2.87
1370 1776 6.931281 TGATTCTCAGTTTTTCTCTACCAGTG 59.069 38.462 0.00 0.00 0.00 3.66
1403 1904 3.729966 TGAACCAGTACATTGTAACGCA 58.270 40.909 0.00 0.00 0.00 5.24
1466 1967 5.163258 TGGCTTTGGGTTGTTGTGAAAATAT 60.163 36.000 0.00 0.00 0.00 1.28
1467 1968 5.762711 GGCTTTGGGTTGTTGTGAAAATATT 59.237 36.000 0.00 0.00 0.00 1.28
1469 1970 6.259829 GCTTTGGGTTGTTGTGAAAATATTGT 59.740 34.615 0.00 0.00 0.00 2.71
1475 1976 4.746466 TGTTGTGAAAATATTGTCCCCCT 58.254 39.130 3.10 0.00 0.00 4.79
1506 2007 1.026182 TCATGGTCATTGCGCAGTCC 61.026 55.000 11.31 12.30 0.00 3.85
1518 2020 1.635663 CGCAGTCCGGAACCAATGAC 61.636 60.000 5.23 0.00 0.00 3.06
1650 2154 3.648739 TGTGCAGGGTATATGGACTACA 58.351 45.455 0.00 0.00 39.49 2.74
1653 2157 4.101119 GTGCAGGGTATATGGACTACACTT 59.899 45.833 0.00 0.00 36.23 3.16
1680 2184 6.049149 TCAGAGCAATGGCAAGTATAAGTAC 58.951 40.000 0.00 0.00 44.61 2.73
1713 2217 6.117975 ACCATTCCATTTCTTGCAGAATTT 57.882 33.333 0.00 0.00 33.67 1.82
1735 2239 9.855021 AATTTTTCAAGGTACATATACTGCAAC 57.145 29.630 0.00 0.00 0.00 4.17
1765 2269 7.184161 TGGAATCTTATGCTATTGCCCATAAT 58.816 34.615 0.00 0.00 38.71 1.28
1766 2270 7.675195 TGGAATCTTATGCTATTGCCCATAATT 59.325 33.333 0.00 0.00 38.71 1.40
1767 2271 8.534496 GGAATCTTATGCTATTGCCCATAATTT 58.466 33.333 0.00 0.00 38.71 1.82
1771 2275 8.579006 TCTTATGCTATTGCCCATAATTTTCTG 58.421 33.333 0.00 0.00 38.71 3.02
1796 2301 7.064229 GGGACCAATATATCTGTTTTAACCCA 58.936 38.462 0.00 0.00 0.00 4.51
1848 2354 9.364989 CAATAATTTTGGACATTTACATCCGTT 57.635 29.630 0.00 0.00 37.87 4.44
1875 2381 4.518970 CCTAAGTGGTGCAAACATGTAGTT 59.481 41.667 0.00 0.00 43.89 2.24
1929 2438 8.806146 TCTATAACTCTTTACCGTAAGTGGTTT 58.194 33.333 8.84 0.00 43.56 3.27
2333 2843 4.471025 TCTTGTATGTGGTCCATGTCAGAT 59.529 41.667 0.00 0.00 34.86 2.90
2344 2854 2.686915 CCATGTCAGATTTTGCTCCCTC 59.313 50.000 0.00 0.00 0.00 4.30
2371 2881 6.882610 ACAAAACTCAGATTTGATGCACTA 57.117 33.333 13.95 0.00 39.56 2.74
2408 2918 8.961294 AACTGATTGAAAACAATTGAATGGAA 57.039 26.923 13.59 0.00 0.00 3.53
2514 3026 5.537188 TGTGGTTTTATTTCACCTCAATGC 58.463 37.500 0.00 0.00 34.40 3.56
2591 3134 1.908619 TCCAATCTTCCTGCACAGCTA 59.091 47.619 0.00 0.00 0.00 3.32
2592 3135 2.507058 TCCAATCTTCCTGCACAGCTAT 59.493 45.455 0.00 0.00 0.00 2.97
2593 3136 3.054139 TCCAATCTTCCTGCACAGCTATT 60.054 43.478 0.00 0.00 0.00 1.73
2594 3137 3.698040 CCAATCTTCCTGCACAGCTATTT 59.302 43.478 0.00 0.00 0.00 1.40
2595 3138 4.201990 CCAATCTTCCTGCACAGCTATTTC 60.202 45.833 0.00 0.00 0.00 2.17
2596 3139 3.701205 TCTTCCTGCACAGCTATTTCA 57.299 42.857 0.00 0.00 0.00 2.69
2597 3140 4.226427 TCTTCCTGCACAGCTATTTCAT 57.774 40.909 0.00 0.00 0.00 2.57
2598 3141 4.592942 TCTTCCTGCACAGCTATTTCATT 58.407 39.130 0.00 0.00 0.00 2.57
2599 3142 5.012239 TCTTCCTGCACAGCTATTTCATTT 58.988 37.500 0.00 0.00 0.00 2.32
2600 3143 5.477984 TCTTCCTGCACAGCTATTTCATTTT 59.522 36.000 0.00 0.00 0.00 1.82
2601 3144 5.314923 TCCTGCACAGCTATTTCATTTTC 57.685 39.130 0.00 0.00 0.00 2.29
2602 3145 5.012239 TCCTGCACAGCTATTTCATTTTCT 58.988 37.500 0.00 0.00 0.00 2.52
2603 3146 5.477984 TCCTGCACAGCTATTTCATTTTCTT 59.522 36.000 0.00 0.00 0.00 2.52
2604 3147 6.015180 TCCTGCACAGCTATTTCATTTTCTTT 60.015 34.615 0.00 0.00 0.00 2.52
2605 3148 6.647895 CCTGCACAGCTATTTCATTTTCTTTT 59.352 34.615 0.00 0.00 0.00 2.27
2606 3149 7.172019 CCTGCACAGCTATTTCATTTTCTTTTT 59.828 33.333 0.00 0.00 0.00 1.94
2607 3150 7.853524 TGCACAGCTATTTCATTTTCTTTTTG 58.146 30.769 0.00 0.00 0.00 2.44
2608 3151 6.793680 GCACAGCTATTTCATTTTCTTTTTGC 59.206 34.615 0.00 0.00 0.00 3.68
2609 3152 7.518689 GCACAGCTATTTCATTTTCTTTTTGCA 60.519 33.333 0.00 0.00 0.00 4.08
2610 3153 8.336806 CACAGCTATTTCATTTTCTTTTTGCAA 58.663 29.630 0.00 0.00 0.00 4.08
2611 3154 9.059260 ACAGCTATTTCATTTTCTTTTTGCAAT 57.941 25.926 0.00 0.00 0.00 3.56
2679 3222 2.256174 CTTTTGATGGCTTGCATCACG 58.744 47.619 3.89 0.00 38.61 4.35
2732 3277 4.869861 GCATTGTTGTGGTTTCAGAGTTTT 59.130 37.500 0.00 0.00 0.00 2.43
2846 3391 8.778358 GCTATATTATGAGAAAGTTTCTGGTGG 58.222 37.037 22.68 4.26 40.87 4.61
2868 3413 1.078497 CCACCCTTAGATGCACGCA 60.078 57.895 0.00 0.00 0.00 5.24
2884 3429 1.573932 GCATGTGCACACGCTACAA 59.426 52.632 29.18 0.57 41.59 2.41
2885 3430 0.725784 GCATGTGCACACGCTACAAC 60.726 55.000 29.18 0.07 41.59 3.32
2886 3431 0.585838 CATGTGCACACGCTACAACA 59.414 50.000 24.37 0.00 39.64 3.33
2927 3472 2.406024 GCATTCTGCATGTTTGAACACG 59.594 45.455 0.00 0.00 44.26 4.49
2947 3492 3.813166 ACGAAACACATGTACCAGGAAAG 59.187 43.478 0.00 0.00 0.00 2.62
2958 3503 4.825085 TGTACCAGGAAAGTGGAATTTCAC 59.175 41.667 9.00 9.00 40.44 3.18
2983 3530 9.530633 ACTGTATAGTAGCTTTATCTTTTTCCG 57.469 33.333 0.00 0.00 34.74 4.30
3026 3573 9.542462 TTCTTTTCCAGTAAGATATGTATTCGG 57.458 33.333 0.00 0.00 32.09 4.30
3172 3735 5.131977 TGGATACATGGTAGTGCACCTAAAT 59.868 40.000 14.63 0.00 45.97 1.40
3187 3750 4.005650 ACCTAAATGTGAGATGCAGTGTG 58.994 43.478 0.00 0.00 0.00 3.82
3241 3804 9.973450 ATATTCTACATAAGTAGTCAGTGCAAG 57.027 33.333 5.12 0.00 46.30 4.01
3273 3836 1.916181 TCTTCCTCCCCTTGATTGACC 59.084 52.381 0.00 0.00 0.00 4.02
3274 3837 1.918957 CTTCCTCCCCTTGATTGACCT 59.081 52.381 0.00 0.00 0.00 3.85
3314 3886 1.896220 TGTGCCAGGCTTGTCTTAAG 58.104 50.000 14.15 0.00 0.00 1.85
3315 3887 1.419762 TGTGCCAGGCTTGTCTTAAGA 59.580 47.619 14.15 0.00 0.00 2.10
3357 3929 9.683069 CTACAATGGATGGCAATTATTTTACTC 57.317 33.333 0.00 0.00 0.00 2.59
3397 3969 3.761897 AGCCAGGTTTGTTACTATTGCA 58.238 40.909 0.00 0.00 0.00 4.08
3442 4014 4.493819 ACTCCTGATATATGGTCCCACT 57.506 45.455 0.00 0.00 0.00 4.00
3443 4015 4.832492 ACTCCTGATATATGGTCCCACTT 58.168 43.478 0.00 0.00 0.00 3.16
3445 4017 5.672194 ACTCCTGATATATGGTCCCACTTTT 59.328 40.000 0.00 0.00 0.00 2.27
3446 4018 6.160459 ACTCCTGATATATGGTCCCACTTTTT 59.840 38.462 0.00 0.00 0.00 1.94
3575 4514 9.832445 AGAGGTATATTTATACACACACAAAGG 57.168 33.333 9.35 0.00 40.16 3.11
3586 4525 6.796705 ACACACACAAAGGCTAAACTATAC 57.203 37.500 0.00 0.00 0.00 1.47
3639 4584 5.531122 TGACAACACTTTGAGCTAGTAGT 57.469 39.130 0.00 0.00 36.48 2.73
3695 4640 9.200817 ACTTAATACTGTTTTGATGGCCAATAT 57.799 29.630 10.96 0.00 34.23 1.28
3868 4815 5.709164 ACATGTGGTCGTTAGTCTAGTACTT 59.291 40.000 0.00 0.00 39.80 2.24
3915 4862 6.074516 CGTTATTACATCCCATTGTACTCACG 60.075 42.308 0.00 0.00 31.05 4.35
3921 4868 2.833794 CCCATTGTACTCACGTATGGG 58.166 52.381 14.32 14.32 45.59 4.00
3932 4879 6.726490 ACTCACGTATGGGATGTAATAACT 57.274 37.500 0.00 0.00 0.00 2.24
3933 4880 6.746120 ACTCACGTATGGGATGTAATAACTC 58.254 40.000 0.00 0.00 0.00 3.01
3990 4937 7.302184 ACCTATTAGACTAGAATTCTGGCTCT 58.698 38.462 18.47 19.27 0.00 4.09
3995 4942 4.889409 AGACTAGAATTCTGGCTCTCTCAG 59.111 45.833 18.47 6.40 0.00 3.35
4025 4973 3.435186 GCAAGGGTCGAAGCTGGC 61.435 66.667 0.00 0.00 0.00 4.85
4051 4999 3.426787 TTCCGATTACTCTTTTGCCCA 57.573 42.857 0.00 0.00 0.00 5.36
4084 5032 9.056005 CATGAGATCTCCGTTATTTTTCCATTA 57.944 33.333 20.03 0.00 0.00 1.90
4755 5703 7.819900 AGTATTCAGACAACATAGTGAAGGTTC 59.180 37.037 0.00 0.00 32.64 3.62
4803 5751 9.264719 CAGCAAAAATCTTAAATTTCAGTTCCT 57.735 29.630 0.00 0.00 0.00 3.36
4858 5806 5.212532 TCTTGTTTGCATGCCAATTAGTT 57.787 34.783 16.68 0.00 32.49 2.24
4878 5827 6.992063 AGTTGTATTGCTATTTGTCAGAGG 57.008 37.500 0.00 0.00 0.00 3.69
4885 5834 5.227569 TGCTATTTGTCAGAGGAAACTGA 57.772 39.130 0.00 0.00 44.43 3.41
4887 5836 5.877012 TGCTATTTGTCAGAGGAAACTGATC 59.123 40.000 0.00 0.00 46.36 2.92
4895 5844 5.290643 GTCAGAGGAAACTGATCGATTTGAG 59.709 44.000 0.00 0.00 46.36 3.02
4896 5845 5.185828 TCAGAGGAAACTGATCGATTTGAGA 59.814 40.000 0.00 0.00 44.43 3.27
4912 5861 0.608640 GAGAACCCGCTCTCCTTTCA 59.391 55.000 0.00 0.00 36.60 2.69
5276 6228 9.046296 CGTTCTAATAAATGATTACTGCCTCTT 57.954 33.333 0.00 0.00 0.00 2.85
5300 6254 2.409975 CAGCTTTTCTTGGGCATTGTG 58.590 47.619 0.00 0.00 0.00 3.33
5454 6410 0.674581 TGATCAAGGGAGCAGCGTTG 60.675 55.000 0.00 0.00 33.81 4.10
5455 6411 0.674895 GATCAAGGGAGCAGCGTTGT 60.675 55.000 0.00 0.00 0.00 3.32
5457 6413 1.165907 TCAAGGGAGCAGCGTTGTTG 61.166 55.000 0.00 0.00 0.00 3.33
5458 6414 1.148273 AAGGGAGCAGCGTTGTTGA 59.852 52.632 0.00 0.00 0.00 3.18
5459 6415 0.886490 AAGGGAGCAGCGTTGTTGAG 60.886 55.000 0.00 0.00 0.00 3.02
5507 6463 3.196469 TGAGTCATCCTTTGAGGCTAGTG 59.804 47.826 0.00 0.00 34.61 2.74
5533 6489 7.370383 GGCTACAATGTTCAAAAGATTCTTCA 58.630 34.615 0.00 0.00 0.00 3.02
5581 6537 8.450964 AGGTAAATAATCATTGAAGTGAACACG 58.549 33.333 0.00 0.00 36.20 4.49
5661 6618 4.104420 AGAGGATGAAGGCTGATTGCTATT 59.896 41.667 0.00 0.00 42.39 1.73
5828 8484 8.980481 TTGAGGAAGATGTTAGACTTCTTTTT 57.020 30.769 9.63 3.51 41.04 1.94
5870 8526 1.283347 ATGCCGGGCAGATCTCATAT 58.717 50.000 27.62 3.79 43.65 1.78
5949 8605 3.340814 CATCCTGCCAGATGGTATACC 57.659 52.381 15.50 15.50 40.03 2.73
5995 8651 5.989551 TTCGTTACAGTTACCTTGGTTTC 57.010 39.130 0.00 0.00 0.00 2.78
5999 8655 5.050567 CGTTACAGTTACCTTGGTTTCTGAC 60.051 44.000 21.25 13.36 0.00 3.51
6046 8702 6.094603 GGCATAGCACCCTTGAATATATTCAG 59.905 42.308 23.61 16.61 46.34 3.02
6066 8722 7.724305 TTCAGTTAATGAACCACTTGTACTC 57.276 36.000 0.00 0.00 43.09 2.59
6067 8723 7.062749 TCAGTTAATGAACCACTTGTACTCT 57.937 36.000 0.00 0.00 36.08 3.24
6068 8724 6.929049 TCAGTTAATGAACCACTTGTACTCTG 59.071 38.462 0.00 0.00 36.08 3.35
6097 8753 3.306641 CCTCTCTCCCATTATACTGCTGC 60.307 52.174 0.00 0.00 0.00 5.25
6103 8759 1.605710 CCATTATACTGCTGCAGTGCC 59.394 52.381 37.89 0.00 45.01 5.01
6105 8761 0.461870 TTATACTGCTGCAGTGCCCG 60.462 55.000 37.89 13.61 45.01 6.13
6111 8767 3.357079 CTGCAGTGCCCGTTGGTC 61.357 66.667 13.72 0.00 0.00 4.02
6112 8768 3.832237 CTGCAGTGCCCGTTGGTCT 62.832 63.158 13.72 0.00 0.00 3.85
6113 8769 3.050275 GCAGTGCCCGTTGGTCTC 61.050 66.667 2.85 0.00 0.00 3.36
6114 8770 2.425592 CAGTGCCCGTTGGTCTCA 59.574 61.111 0.00 0.00 0.00 3.27
6115 8771 1.003355 CAGTGCCCGTTGGTCTCAT 60.003 57.895 0.00 0.00 0.00 2.90
6116 8772 1.003355 AGTGCCCGTTGGTCTCATG 60.003 57.895 0.00 0.00 0.00 3.07
6145 8801 5.734503 GCACCTTATTGCAAGATTAGGAAGC 60.735 44.000 16.79 15.08 42.49 3.86
6157 8813 4.290459 AGATTAGGAAGCCATGATATGCCA 59.710 41.667 0.00 0.00 0.00 4.92
6180 8836 4.822685 TGGGATGTTTCCATGGAAAATG 57.177 40.909 35.70 0.00 44.40 2.32
6182 8838 5.336945 TGGGATGTTTCCATGGAAAATGTA 58.663 37.500 35.70 23.50 44.40 2.29
6194 8850 2.689983 GGAAAATGTAGAGGCCATGTGG 59.310 50.000 5.01 0.00 38.53 4.17
6235 8891 7.281841 TCAGTGATATCTGGAAATGCATGTAA 58.718 34.615 0.00 0.00 36.25 2.41
6317 8973 5.470368 CCGTTCTCAAGTAGTCAAATCTCA 58.530 41.667 0.00 0.00 0.00 3.27
6320 8976 7.284351 CGTTCTCAAGTAGTCAAATCTCAAAC 58.716 38.462 0.00 0.00 0.00 2.93
6361 9017 3.323403 GCTGGATGTGGAAGTATAGCTCT 59.677 47.826 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.243839 GGCAATTTTCAGGTCAAGCTTGA 60.244 43.478 25.16 25.16 34.20 3.02
3 4 3.062042 GGCAATTTTCAGGTCAAGCTTG 58.938 45.455 20.81 20.81 0.00 4.01
4 5 2.037641 GGGCAATTTTCAGGTCAAGCTT 59.962 45.455 0.00 0.00 0.00 3.74
5 6 1.620323 GGGCAATTTTCAGGTCAAGCT 59.380 47.619 0.00 0.00 0.00 3.74
6 7 1.669795 CGGGCAATTTTCAGGTCAAGC 60.670 52.381 0.00 0.00 0.00 4.01
7 8 1.067635 CCGGGCAATTTTCAGGTCAAG 60.068 52.381 0.00 0.00 0.00 3.02
8 9 0.965439 CCGGGCAATTTTCAGGTCAA 59.035 50.000 0.00 0.00 0.00 3.18
9 10 0.111446 TCCGGGCAATTTTCAGGTCA 59.889 50.000 0.00 0.00 0.00 4.02
10 11 0.811281 CTCCGGGCAATTTTCAGGTC 59.189 55.000 0.00 0.00 0.00 3.85
11 12 0.112412 ACTCCGGGCAATTTTCAGGT 59.888 50.000 0.00 0.00 0.00 4.00
12 13 1.202348 GAACTCCGGGCAATTTTCAGG 59.798 52.381 0.00 0.00 0.00 3.86
13 14 2.162681 AGAACTCCGGGCAATTTTCAG 58.837 47.619 0.00 0.00 0.00 3.02
14 15 2.286365 AGAACTCCGGGCAATTTTCA 57.714 45.000 0.00 0.00 0.00 2.69
15 16 4.983671 AATAGAACTCCGGGCAATTTTC 57.016 40.909 0.00 0.00 0.00 2.29
16 17 7.418337 AAATAATAGAACTCCGGGCAATTTT 57.582 32.000 0.00 0.00 0.00 1.82
17 18 7.418337 AAAATAATAGAACTCCGGGCAATTT 57.582 32.000 0.00 0.00 0.00 1.82
18 19 7.418337 AAAAATAATAGAACTCCGGGCAATT 57.582 32.000 0.00 0.00 0.00 2.32
19 20 8.706322 ATAAAAATAATAGAACTCCGGGCAAT 57.294 30.769 0.00 0.00 0.00 3.56
20 21 8.528044 AATAAAAATAATAGAACTCCGGGCAA 57.472 30.769 0.00 0.00 0.00 4.52
21 22 9.059260 GTAATAAAAATAATAGAACTCCGGGCA 57.941 33.333 0.00 0.00 0.00 5.36
22 23 9.281371 AGTAATAAAAATAATAGAACTCCGGGC 57.719 33.333 0.00 0.00 0.00 6.13
38 39 9.886132 GGGAGACTCATCACTTAGTAATAAAAA 57.114 33.333 4.53 0.00 0.00 1.94
39 40 9.268282 AGGGAGACTCATCACTTAGTAATAAAA 57.732 33.333 4.53 0.00 23.88 1.52
40 41 8.840200 AGGGAGACTCATCACTTAGTAATAAA 57.160 34.615 4.53 0.00 23.88 1.40
41 42 8.466617 GAGGGAGACTCATCACTTAGTAATAA 57.533 38.462 4.53 0.00 45.85 1.40
43 44 6.969993 GAGGGAGACTCATCACTTAGTAAT 57.030 41.667 4.53 0.00 45.85 1.89
56 57 5.470047 TGAAAAGTTACTGAGGGAGACTC 57.530 43.478 0.00 0.00 46.78 3.36
57 58 5.888982 TTGAAAAGTTACTGAGGGAGACT 57.111 39.130 0.00 0.00 0.00 3.24
58 59 7.660208 TGTAATTGAAAAGTTACTGAGGGAGAC 59.340 37.037 0.00 0.00 33.17 3.36
59 60 7.741785 TGTAATTGAAAAGTTACTGAGGGAGA 58.258 34.615 0.00 0.00 33.17 3.71
60 61 7.979444 TGTAATTGAAAAGTTACTGAGGGAG 57.021 36.000 0.00 0.00 33.17 4.30
61 62 7.996644 ACTTGTAATTGAAAAGTTACTGAGGGA 59.003 33.333 0.00 0.00 33.17 4.20
62 63 8.166422 ACTTGTAATTGAAAAGTTACTGAGGG 57.834 34.615 0.00 0.00 33.17 4.30
99 100 9.220767 GGTAGAGAATGAAAGTTTCTATGTGTT 57.779 33.333 16.33 2.80 33.65 3.32
100 101 8.375506 TGGTAGAGAATGAAAGTTTCTATGTGT 58.624 33.333 16.33 5.47 33.65 3.72
101 102 8.777865 TGGTAGAGAATGAAAGTTTCTATGTG 57.222 34.615 16.33 0.00 33.65 3.21
102 103 9.388506 CATGGTAGAGAATGAAAGTTTCTATGT 57.611 33.333 16.33 4.18 33.65 2.29
103 104 9.388506 ACATGGTAGAGAATGAAAGTTTCTATG 57.611 33.333 16.33 4.07 33.65 2.23
104 105 9.606631 GACATGGTAGAGAATGAAAGTTTCTAT 57.393 33.333 16.33 5.41 33.65 1.98
105 106 8.041323 GGACATGGTAGAGAATGAAAGTTTCTA 58.959 37.037 16.33 4.00 33.65 2.10
106 107 6.881602 GGACATGGTAGAGAATGAAAGTTTCT 59.118 38.462 16.33 0.00 36.16 2.52
107 108 6.183360 CGGACATGGTAGAGAATGAAAGTTTC 60.183 42.308 8.75 8.75 0.00 2.78
108 109 5.643777 CGGACATGGTAGAGAATGAAAGTTT 59.356 40.000 0.00 0.00 0.00 2.66
109 110 5.178797 CGGACATGGTAGAGAATGAAAGTT 58.821 41.667 0.00 0.00 0.00 2.66
110 111 4.383118 CCGGACATGGTAGAGAATGAAAGT 60.383 45.833 0.00 0.00 0.00 2.66
111 112 4.122776 CCGGACATGGTAGAGAATGAAAG 58.877 47.826 0.00 0.00 0.00 2.62
112 113 3.772572 TCCGGACATGGTAGAGAATGAAA 59.227 43.478 0.00 0.00 0.00 2.69
113 114 3.371034 TCCGGACATGGTAGAGAATGAA 58.629 45.455 0.00 0.00 0.00 2.57
114 115 3.026707 TCCGGACATGGTAGAGAATGA 57.973 47.619 0.00 0.00 0.00 2.57
115 116 3.384789 TCTTCCGGACATGGTAGAGAATG 59.615 47.826 1.83 0.00 31.31 2.67
116 117 3.643237 TCTTCCGGACATGGTAGAGAAT 58.357 45.455 1.83 0.00 31.31 2.40
117 118 3.095912 TCTTCCGGACATGGTAGAGAA 57.904 47.619 1.83 0.00 31.31 2.87
118 119 2.820728 TCTTCCGGACATGGTAGAGA 57.179 50.000 1.83 0.00 31.31 3.10
119 120 6.378564 ACATATATCTTCCGGACATGGTAGAG 59.621 42.308 1.83 0.00 38.60 2.43
120 121 6.152831 CACATATATCTTCCGGACATGGTAGA 59.847 42.308 1.83 3.08 39.39 2.59
121 122 6.152831 TCACATATATCTTCCGGACATGGTAG 59.847 42.308 1.83 0.00 0.00 3.18
122 123 6.014012 TCACATATATCTTCCGGACATGGTA 58.986 40.000 1.83 0.00 0.00 3.25
123 124 4.838423 TCACATATATCTTCCGGACATGGT 59.162 41.667 1.83 0.00 0.00 3.55
124 125 5.405935 TCACATATATCTTCCGGACATGG 57.594 43.478 1.83 0.00 0.00 3.66
125 126 6.401394 ACATCACATATATCTTCCGGACATG 58.599 40.000 1.83 3.78 0.00 3.21
126 127 6.611613 ACATCACATATATCTTCCGGACAT 57.388 37.500 1.83 1.17 0.00 3.06
127 128 6.419484 AACATCACATATATCTTCCGGACA 57.581 37.500 1.83 0.00 0.00 4.02
128 129 7.441157 TCAAAACATCACATATATCTTCCGGAC 59.559 37.037 1.83 0.00 0.00 4.79
129 130 7.505258 TCAAAACATCACATATATCTTCCGGA 58.495 34.615 0.00 0.00 0.00 5.14
130 131 7.095060 CCTCAAAACATCACATATATCTTCCGG 60.095 40.741 0.00 0.00 0.00 5.14
131 132 7.657354 TCCTCAAAACATCACATATATCTTCCG 59.343 37.037 0.00 0.00 0.00 4.30
132 133 8.908786 TCCTCAAAACATCACATATATCTTCC 57.091 34.615 0.00 0.00 0.00 3.46
133 134 8.502387 GCTCCTCAAAACATCACATATATCTTC 58.498 37.037 0.00 0.00 0.00 2.87
134 135 7.994911 TGCTCCTCAAAACATCACATATATCTT 59.005 33.333 0.00 0.00 0.00 2.40
135 136 7.443575 GTGCTCCTCAAAACATCACATATATCT 59.556 37.037 0.00 0.00 0.00 1.98
136 137 7.570140 CGTGCTCCTCAAAACATCACATATATC 60.570 40.741 0.00 0.00 0.00 1.63
137 138 6.203530 CGTGCTCCTCAAAACATCACATATAT 59.796 38.462 0.00 0.00 0.00 0.86
138 139 5.523552 CGTGCTCCTCAAAACATCACATATA 59.476 40.000 0.00 0.00 0.00 0.86
139 140 4.333649 CGTGCTCCTCAAAACATCACATAT 59.666 41.667 0.00 0.00 0.00 1.78
140 141 3.684305 CGTGCTCCTCAAAACATCACATA 59.316 43.478 0.00 0.00 0.00 2.29
141 142 2.485426 CGTGCTCCTCAAAACATCACAT 59.515 45.455 0.00 0.00 0.00 3.21
142 143 1.872952 CGTGCTCCTCAAAACATCACA 59.127 47.619 0.00 0.00 0.00 3.58
143 144 2.143122 TCGTGCTCCTCAAAACATCAC 58.857 47.619 0.00 0.00 0.00 3.06
144 145 2.542020 TCGTGCTCCTCAAAACATCA 57.458 45.000 0.00 0.00 0.00 3.07
145 146 3.896648 TTTCGTGCTCCTCAAAACATC 57.103 42.857 0.00 0.00 0.00 3.06
146 147 4.647424 TTTTTCGTGCTCCTCAAAACAT 57.353 36.364 0.00 0.00 0.00 2.71
147 148 4.358851 CATTTTTCGTGCTCCTCAAAACA 58.641 39.130 0.00 0.00 0.00 2.83
148 149 3.735746 CCATTTTTCGTGCTCCTCAAAAC 59.264 43.478 0.00 0.00 0.00 2.43
149 150 3.634448 TCCATTTTTCGTGCTCCTCAAAA 59.366 39.130 0.00 0.00 0.00 2.44
150 151 3.218453 TCCATTTTTCGTGCTCCTCAAA 58.782 40.909 0.00 0.00 0.00 2.69
151 152 2.857483 TCCATTTTTCGTGCTCCTCAA 58.143 42.857 0.00 0.00 0.00 3.02
152 153 2.552315 GTTCCATTTTTCGTGCTCCTCA 59.448 45.455 0.00 0.00 0.00 3.86
153 154 2.412847 CGTTCCATTTTTCGTGCTCCTC 60.413 50.000 0.00 0.00 0.00 3.71
154 155 1.535462 CGTTCCATTTTTCGTGCTCCT 59.465 47.619 0.00 0.00 0.00 3.69
155 156 1.533731 TCGTTCCATTTTTCGTGCTCC 59.466 47.619 0.00 0.00 0.00 4.70
156 157 2.961522 TCGTTCCATTTTTCGTGCTC 57.038 45.000 0.00 0.00 0.00 4.26
157 158 3.074412 AGATCGTTCCATTTTTCGTGCT 58.926 40.909 0.00 0.00 0.00 4.40
158 159 3.471495 AGATCGTTCCATTTTTCGTGC 57.529 42.857 0.00 0.00 0.00 5.34
159 160 4.851558 GGAAAGATCGTTCCATTTTTCGTG 59.148 41.667 28.89 0.00 45.57 4.35
160 161 5.043189 GGAAAGATCGTTCCATTTTTCGT 57.957 39.130 28.89 0.00 45.57 3.85
169 170 5.524281 GGTCAATAGAAGGAAAGATCGTTCC 59.476 44.000 27.27 27.27 46.63 3.62
170 171 6.036191 GTGGTCAATAGAAGGAAAGATCGTTC 59.964 42.308 12.39 12.39 46.09 3.95
171 172 5.875359 GTGGTCAATAGAAGGAAAGATCGTT 59.125 40.000 0.00 0.00 36.42 3.85
172 173 5.420409 GTGGTCAATAGAAGGAAAGATCGT 58.580 41.667 0.00 0.00 0.00 3.73
173 174 4.811557 GGTGGTCAATAGAAGGAAAGATCG 59.188 45.833 0.00 0.00 0.00 3.69
174 175 5.745227 TGGTGGTCAATAGAAGGAAAGATC 58.255 41.667 0.00 0.00 0.00 2.75
175 176 5.779241 TGGTGGTCAATAGAAGGAAAGAT 57.221 39.130 0.00 0.00 0.00 2.40
176 177 5.779241 ATGGTGGTCAATAGAAGGAAAGA 57.221 39.130 0.00 0.00 0.00 2.52
177 178 5.358160 GGAATGGTGGTCAATAGAAGGAAAG 59.642 44.000 0.00 0.00 0.00 2.62
178 179 5.222233 TGGAATGGTGGTCAATAGAAGGAAA 60.222 40.000 0.00 0.00 0.00 3.13
179 180 4.290985 TGGAATGGTGGTCAATAGAAGGAA 59.709 41.667 0.00 0.00 0.00 3.36
180 181 3.849574 TGGAATGGTGGTCAATAGAAGGA 59.150 43.478 0.00 0.00 0.00 3.36
181 182 3.947834 GTGGAATGGTGGTCAATAGAAGG 59.052 47.826 0.00 0.00 0.00 3.46
182 183 4.588899 TGTGGAATGGTGGTCAATAGAAG 58.411 43.478 0.00 0.00 0.00 2.85
183 184 4.649267 TGTGGAATGGTGGTCAATAGAA 57.351 40.909 0.00 0.00 0.00 2.10
184 185 4.474651 AGATGTGGAATGGTGGTCAATAGA 59.525 41.667 0.00 0.00 0.00 1.98
185 186 4.785301 AGATGTGGAATGGTGGTCAATAG 58.215 43.478 0.00 0.00 0.00 1.73
186 187 4.860802 AGATGTGGAATGGTGGTCAATA 57.139 40.909 0.00 0.00 0.00 1.90
187 188 3.744940 AGATGTGGAATGGTGGTCAAT 57.255 42.857 0.00 0.00 0.00 2.57
188 189 3.524095 AAGATGTGGAATGGTGGTCAA 57.476 42.857 0.00 0.00 0.00 3.18
189 190 3.156293 CAAAGATGTGGAATGGTGGTCA 58.844 45.455 0.00 0.00 0.00 4.02
190 191 3.157087 ACAAAGATGTGGAATGGTGGTC 58.843 45.455 0.00 0.00 38.69 4.02
191 192 3.243359 ACAAAGATGTGGAATGGTGGT 57.757 42.857 0.00 0.00 38.69 4.16
192 193 3.828451 AGAACAAAGATGTGGAATGGTGG 59.172 43.478 0.00 0.00 40.46 4.61
193 194 5.458041 AAGAACAAAGATGTGGAATGGTG 57.542 39.130 0.00 0.00 40.46 4.17
194 195 7.781324 ATAAAGAACAAAGATGTGGAATGGT 57.219 32.000 0.00 0.00 40.46 3.55
195 196 9.492973 AAAATAAAGAACAAAGATGTGGAATGG 57.507 29.630 0.00 0.00 40.46 3.16
266 267 6.477053 TTGAGAAATGGGTTTGATGTCAAA 57.523 33.333 4.16 4.16 42.90 2.69
267 268 6.477053 TTTGAGAAATGGGTTTGATGTCAA 57.523 33.333 0.00 0.00 0.00 3.18
268 269 6.477053 TTTTGAGAAATGGGTTTGATGTCA 57.523 33.333 0.00 0.00 0.00 3.58
269 270 7.874528 AGAATTTTGAGAAATGGGTTTGATGTC 59.125 33.333 0.00 0.00 35.69 3.06
270 271 7.738847 AGAATTTTGAGAAATGGGTTTGATGT 58.261 30.769 0.00 0.00 35.69 3.06
271 272 8.500773 CAAGAATTTTGAGAAATGGGTTTGATG 58.499 33.333 0.00 0.00 35.69 3.07
272 273 8.212995 ACAAGAATTTTGAGAAATGGGTTTGAT 58.787 29.630 7.18 0.00 35.69 2.57
273 274 7.563906 ACAAGAATTTTGAGAAATGGGTTTGA 58.436 30.769 7.18 0.00 35.69 2.69
274 275 7.790823 ACAAGAATTTTGAGAAATGGGTTTG 57.209 32.000 7.18 0.00 35.69 2.93
275 276 8.704668 ACTACAAGAATTTTGAGAAATGGGTTT 58.295 29.630 7.18 0.00 35.69 3.27
276 277 8.143835 CACTACAAGAATTTTGAGAAATGGGTT 58.856 33.333 7.18 0.00 35.69 4.11
277 278 7.287696 ACACTACAAGAATTTTGAGAAATGGGT 59.712 33.333 7.18 0.00 35.69 4.51
278 279 7.661040 ACACTACAAGAATTTTGAGAAATGGG 58.339 34.615 7.18 0.00 35.69 4.00
282 283 9.403583 ACCTAACACTACAAGAATTTTGAGAAA 57.596 29.630 7.18 0.00 0.00 2.52
283 284 8.836413 CACCTAACACTACAAGAATTTTGAGAA 58.164 33.333 7.18 0.00 0.00 2.87
284 285 7.444183 CCACCTAACACTACAAGAATTTTGAGA 59.556 37.037 7.18 0.00 0.00 3.27
285 286 7.444183 TCCACCTAACACTACAAGAATTTTGAG 59.556 37.037 7.18 4.18 0.00 3.02
286 287 7.227910 GTCCACCTAACACTACAAGAATTTTGA 59.772 37.037 7.18 0.00 0.00 2.69
287 288 7.360361 GTCCACCTAACACTACAAGAATTTTG 58.640 38.462 0.00 0.00 0.00 2.44
292 293 3.325716 GGGTCCACCTAACACTACAAGAA 59.674 47.826 0.00 0.00 35.85 2.52
311 312 2.599757 GGTGGGCTTAAGGACGGGT 61.600 63.158 4.29 0.00 0.00 5.28
368 369 3.451902 ACCCCGGATATGTTTTCTTCGTA 59.548 43.478 0.73 0.00 0.00 3.43
381 382 2.516227 TGCATTTTCAACCCCGGATA 57.484 45.000 0.73 0.00 0.00 2.59
382 383 1.638529 TTGCATTTTCAACCCCGGAT 58.361 45.000 0.73 0.00 0.00 4.18
383 384 1.342819 CTTTGCATTTTCAACCCCGGA 59.657 47.619 0.73 0.00 0.00 5.14
1056 1058 2.076803 GGCGGAGGATTTAGGGGGT 61.077 63.158 0.00 0.00 0.00 4.95
1074 1076 3.953828 AAAAAGGAGGGGAGGGGG 58.046 61.111 0.00 0.00 0.00 5.40
1170 1570 2.228822 GCCATGTCACGGAAAACAGAAT 59.771 45.455 0.00 0.00 0.00 2.40
1256 1662 2.483876 TCACGAGCAGAGAACCAAAAG 58.516 47.619 0.00 0.00 0.00 2.27
1259 1665 1.138069 TGTTCACGAGCAGAGAACCAA 59.862 47.619 15.61 1.31 45.72 3.67
1296 1702 1.073722 CAGGAGTCCAGGCTGCAAA 59.926 57.895 12.86 0.00 0.00 3.68
1298 1704 3.324930 CCAGGAGTCCAGGCTGCA 61.325 66.667 12.86 0.00 0.00 4.41
1328 1734 0.820226 TCAGAGCGCATCTTGCTAGT 59.180 50.000 11.47 0.00 44.18 2.57
1362 1768 3.939592 TCAGTACATCTCGACACTGGTAG 59.060 47.826 0.00 0.00 39.09 3.18
1370 1776 3.851976 ACTGGTTCAGTACATCTCGAC 57.148 47.619 0.00 0.00 43.46 4.20
1466 1967 1.702957 CCAACTCACTAAGGGGGACAA 59.297 52.381 0.00 0.00 0.00 3.18
1467 1968 1.358152 CCAACTCACTAAGGGGGACA 58.642 55.000 0.00 0.00 0.00 4.02
1469 1970 1.132657 TGACCAACTCACTAAGGGGGA 60.133 52.381 0.00 0.00 0.00 4.81
1475 1976 4.908601 ATGACCATGACCAACTCACTAA 57.091 40.909 0.00 0.00 0.00 2.24
1518 2020 7.483691 GCTTATTTAACTATTGTTGGTCAACCG 59.516 37.037 10.83 1.12 40.46 4.44
1592 2096 9.512588 AATCAGAAACACTCATAAGAAGACATT 57.487 29.630 0.00 0.00 0.00 2.71
1593 2097 8.944029 CAATCAGAAACACTCATAAGAAGACAT 58.056 33.333 0.00 0.00 0.00 3.06
1604 2108 6.822667 ATGTAATGCAATCAGAAACACTCA 57.177 33.333 0.00 0.00 0.00 3.41
1650 2154 2.574006 TGCCATTGCTCTGAGAAAGT 57.426 45.000 9.28 0.00 38.71 2.66
1653 2157 2.574006 ACTTGCCATTGCTCTGAGAA 57.426 45.000 9.28 0.00 38.71 2.87
1680 2184 2.154854 ATGGAATGGTCGCATAGTCG 57.845 50.000 0.00 0.00 0.00 4.18
1713 2217 7.620880 AGAGTTGCAGTATATGTACCTTGAAA 58.379 34.615 0.00 0.00 0.00 2.69
1729 2233 4.272991 GCATAAGATTCCAGAGAGTTGCAG 59.727 45.833 0.00 0.00 0.00 4.41
1735 2239 5.642919 GGCAATAGCATAAGATTCCAGAGAG 59.357 44.000 0.00 0.00 44.61 3.20
1765 2269 8.893563 AAAACAGATATATTGGTCCCAGAAAA 57.106 30.769 0.00 0.00 0.00 2.29
1766 2270 9.983024 TTAAAACAGATATATTGGTCCCAGAAA 57.017 29.630 0.00 0.00 0.00 2.52
1767 2271 9.403583 GTTAAAACAGATATATTGGTCCCAGAA 57.596 33.333 0.00 0.00 0.00 3.02
1771 2275 7.064229 TGGGTTAAAACAGATATATTGGTCCC 58.936 38.462 0.00 0.00 0.00 4.46
1796 2301 7.928706 GTCTCCTACTCTACATATTTGCAACAT 59.071 37.037 0.00 0.00 0.00 2.71
1845 2351 4.214545 TGTTTGCACCACTTAGGATAAACG 59.785 41.667 0.00 0.00 41.22 3.60
1848 2354 5.321102 ACATGTTTGCACCACTTAGGATAA 58.679 37.500 0.00 0.00 41.22 1.75
1875 2381 4.778213 AATTCATAGTCTGCTGGCCTAA 57.222 40.909 3.32 0.00 0.00 2.69
1929 2438 7.352079 TGAATCACTGTCTTCTGCATATCTA 57.648 36.000 0.00 0.00 0.00 1.98
2127 2637 4.020573 TGGATCAACATAAGTCAAGGTCGT 60.021 41.667 0.00 0.00 0.00 4.34
2278 2788 6.873605 GCAGGCAGTACTTGGAAATTAAAAAT 59.126 34.615 0.00 0.00 0.00 1.82
2333 2843 5.654650 TGAGTTTTGTTAAGAGGGAGCAAAA 59.345 36.000 0.00 0.00 36.90 2.44
2344 2854 7.864379 AGTGCATCAAATCTGAGTTTTGTTAAG 59.136 33.333 13.80 5.94 35.90 1.85
2541 3055 4.458989 GTCCATGTATTTGCCAAGAGTTCA 59.541 41.667 0.00 0.00 0.00 3.18
2545 3059 4.012374 AGTGTCCATGTATTTGCCAAGAG 58.988 43.478 0.00 0.00 0.00 2.85
2598 3141 9.434420 CAGGGAACAATATATTGCAAAAAGAAA 57.566 29.630 22.66 0.00 41.38 2.52
2599 3142 8.592809 ACAGGGAACAATATATTGCAAAAAGAA 58.407 29.630 22.66 0.00 41.38 2.52
2600 3143 8.133024 ACAGGGAACAATATATTGCAAAAAGA 57.867 30.769 22.66 0.00 41.38 2.52
2601 3144 8.658609 CAACAGGGAACAATATATTGCAAAAAG 58.341 33.333 22.66 12.72 41.38 2.27
2602 3145 7.605691 CCAACAGGGAACAATATATTGCAAAAA 59.394 33.333 22.66 0.00 39.19 1.94
2603 3146 7.102346 CCAACAGGGAACAATATATTGCAAAA 58.898 34.615 22.66 0.00 39.19 2.44
2604 3147 6.638610 CCAACAGGGAACAATATATTGCAAA 58.361 36.000 22.66 0.00 39.19 3.68
2605 3148 5.395103 GCCAACAGGGAACAATATATTGCAA 60.395 40.000 22.66 0.00 39.19 4.08
2606 3149 4.099266 GCCAACAGGGAACAATATATTGCA 59.901 41.667 22.66 0.00 39.19 4.08
2607 3150 4.342092 AGCCAACAGGGAACAATATATTGC 59.658 41.667 22.66 9.43 39.19 3.56
2608 3151 6.545666 TGTAGCCAACAGGGAACAATATATTG 59.454 38.462 21.42 21.42 40.58 1.90
2609 3152 6.546034 GTGTAGCCAACAGGGAACAATATATT 59.454 38.462 0.00 0.00 39.29 1.28
2610 3153 6.062095 GTGTAGCCAACAGGGAACAATATAT 58.938 40.000 0.00 0.00 39.29 0.86
2611 3154 5.190925 AGTGTAGCCAACAGGGAACAATATA 59.809 40.000 0.00 0.00 39.29 0.86
2679 3222 8.233190 CACTGATTAGGTGAAAATTCTGACTTC 58.767 37.037 0.00 0.00 36.89 3.01
2846 3391 1.541233 CGTGCATCTAAGGGTGGGATC 60.541 57.143 0.00 0.00 0.00 3.36
2868 3413 0.867746 CTGTTGTAGCGTGTGCACAT 59.132 50.000 24.69 9.98 46.23 3.21
2878 3423 3.198872 GCATAAGGACCTCTGTTGTAGC 58.801 50.000 0.00 0.00 0.00 3.58
2884 3429 4.521146 CTTGATTGCATAAGGACCTCTGT 58.479 43.478 0.00 0.00 0.00 3.41
2885 3430 3.314635 GCTTGATTGCATAAGGACCTCTG 59.685 47.826 0.00 0.00 0.00 3.35
2886 3431 3.054139 TGCTTGATTGCATAAGGACCTCT 60.054 43.478 0.00 0.00 38.12 3.69
2927 3472 4.023193 CCACTTTCCTGGTACATGTGTTTC 60.023 45.833 9.11 0.00 38.20 2.78
2947 3492 8.494016 AAAGCTACTATACAGTGAAATTCCAC 57.506 34.615 0.00 0.00 36.14 4.02
2958 3503 9.530633 ACGGAAAAAGATAAAGCTACTATACAG 57.469 33.333 0.00 0.00 0.00 2.74
2982 3529 6.912203 AAAGAAACCCAAAATAAACCAACG 57.088 33.333 0.00 0.00 0.00 4.10
2983 3530 7.337184 TGGAAAAGAAACCCAAAATAAACCAAC 59.663 33.333 0.00 0.00 0.00 3.77
3026 3573 6.913170 TCTATGCATGGAGAAACAGAAAAAC 58.087 36.000 8.93 0.00 0.00 2.43
3172 3735 2.754472 GTGTACACACTGCATCTCACA 58.246 47.619 21.14 0.00 43.25 3.58
3187 3750 7.118101 AGCTCTACTAATAGTATGAGCGTGTAC 59.882 40.741 26.71 13.25 45.63 2.90
3241 3804 3.370633 GGGGAGGAAGAATCAAGTACCAC 60.371 52.174 0.00 0.00 0.00 4.16
3273 3836 6.525628 CACAATTAGCAGACAAAACAGCATAG 59.474 38.462 0.00 0.00 0.00 2.23
3274 3837 6.380995 CACAATTAGCAGACAAAACAGCATA 58.619 36.000 0.00 0.00 0.00 3.14
3517 4452 3.733443 AAAATGTCAAGACCAGGCAAC 57.267 42.857 0.00 0.00 0.00 4.17
3575 4514 6.367969 CCGTGATTACATGGGTATAGTTTAGC 59.632 42.308 0.00 0.00 46.26 3.09
3639 4584 3.323115 TGCCAATGCCTTGTGATAAAACA 59.677 39.130 0.91 0.00 36.33 2.83
3642 4587 3.514706 ACATGCCAATGCCTTGTGATAAA 59.485 39.130 0.91 0.00 37.29 1.40
3868 4815 4.703575 CGTCTTATATTATGGGACGGAGGA 59.296 45.833 17.59 0.00 43.69 3.71
3932 4879 4.046231 TCCCTCCGTCCCATAATATAAGGA 59.954 45.833 0.00 0.00 0.00 3.36
3933 4880 4.359105 TCCCTCCGTCCCATAATATAAGG 58.641 47.826 0.00 0.00 0.00 2.69
3990 4937 0.898320 GCTGCCAGTAACTCCTGAGA 59.102 55.000 0.22 0.00 34.23 3.27
3995 4942 0.678048 CCCTTGCTGCCAGTAACTCC 60.678 60.000 0.00 0.00 0.00 3.85
4025 4973 5.095490 GCAAAAGAGTAATCGGAATTGGTG 58.905 41.667 0.00 0.00 0.00 4.17
4051 4999 0.399454 CGGAGATCTCATGGGGCAAT 59.601 55.000 23.85 0.00 0.00 3.56
4180 5128 9.821662 ATAAAAAGTGCAAGACGAATAAGTTAC 57.178 29.630 0.00 0.00 0.00 2.50
4431 5379 9.113797 ACCAGTGTCTAGATATAGATACCTACA 57.886 37.037 17.55 1.28 38.47 2.74
4755 5703 4.083802 TGACATGCATAGTCTAGACGATCG 60.084 45.833 17.07 14.88 36.94 3.69
4803 5751 3.507233 CACTTTGCAGGCATTAGGAGAAA 59.493 43.478 0.00 0.00 0.00 2.52
4858 5806 7.119699 CAGTTTCCTCTGACAAATAGCAATACA 59.880 37.037 0.00 0.00 37.61 2.29
4878 5827 4.201724 CGGGTTCTCAAATCGATCAGTTTC 60.202 45.833 0.00 0.00 0.00 2.78
4885 5834 1.482593 AGAGCGGGTTCTCAAATCGAT 59.517 47.619 0.00 0.00 35.59 3.59
4887 5836 1.281899 GAGAGCGGGTTCTCAAATCG 58.718 55.000 7.55 0.00 42.53 3.34
4895 5844 1.157585 GTTGAAAGGAGAGCGGGTTC 58.842 55.000 0.00 0.00 0.00 3.62
4896 5845 0.472471 TGTTGAAAGGAGAGCGGGTT 59.528 50.000 0.00 0.00 0.00 4.11
4912 5861 6.239036 GGTGCAAAGGAATCTAAAGAGTTGTT 60.239 38.462 0.00 0.00 0.00 2.83
5040 5989 3.555547 AGGAAACAAAGTTTCAATTGCGC 59.444 39.130 20.30 0.00 0.00 6.09
5260 6212 4.226427 TGCAGAAGAGGCAGTAATCATT 57.774 40.909 0.00 0.00 36.11 2.57
5276 6228 0.467844 TGCCCAAGAAAAGCTGCAGA 60.468 50.000 20.43 0.00 0.00 4.26
5277 6229 0.606604 ATGCCCAAGAAAAGCTGCAG 59.393 50.000 10.11 10.11 31.53 4.41
5402 6358 4.198028 TCACTCTGATCAACATGTCAGG 57.802 45.455 11.22 6.04 41.64 3.86
5454 6410 3.055819 TGAGCCCAAGATACTCACTCAAC 60.056 47.826 0.00 0.00 35.58 3.18
5455 6411 3.173151 TGAGCCCAAGATACTCACTCAA 58.827 45.455 0.00 0.00 35.58 3.02
5457 6413 2.482839 GCTGAGCCCAAGATACTCACTC 60.483 54.545 0.00 0.00 35.58 3.51
5458 6414 1.484240 GCTGAGCCCAAGATACTCACT 59.516 52.381 0.00 0.00 35.58 3.41
5459 6415 1.484240 AGCTGAGCCCAAGATACTCAC 59.516 52.381 0.00 0.00 35.58 3.51
5507 6463 6.272822 AGAATCTTTTGAACATTGTAGCCC 57.727 37.500 0.00 0.00 0.00 5.19
5533 6489 1.442769 CCTGCAACGTGATGCTAACT 58.557 50.000 13.05 0.00 46.54 2.24
5581 6537 7.553044 AGTTAGCCTTTTGTCCACTAATATCAC 59.447 37.037 0.00 0.00 0.00 3.06
5850 8506 1.059098 TATGAGATCTGCCCGGCATT 58.941 50.000 13.86 3.32 38.13 3.56
5949 8605 1.940883 TAGACGCACTTACCGGCAGG 61.941 60.000 0.00 0.00 45.13 4.85
6006 8662 3.377172 GCTATGCCGTTTATGTCCAGTTT 59.623 43.478 0.00 0.00 0.00 2.66
6018 8674 0.037590 TTCAAGGGTGCTATGCCGTT 59.962 50.000 0.00 0.00 34.82 4.44
6046 8702 6.704493 TCACAGAGTACAAGTGGTTCATTAAC 59.296 38.462 10.98 0.00 34.17 2.01
6066 8722 0.040351 TGGGAGAGAGGTCCTCACAG 59.960 60.000 21.26 0.00 44.40 3.66
6067 8723 0.712979 ATGGGAGAGAGGTCCTCACA 59.287 55.000 21.26 11.29 46.73 3.58
6068 8724 1.872773 AATGGGAGAGAGGTCCTCAC 58.127 55.000 21.26 14.78 44.40 3.51
6097 8753 1.003355 ATGAGACCAACGGGCACTG 60.003 57.895 0.00 0.00 42.99 3.66
6103 8759 1.021390 GCAGACCATGAGACCAACGG 61.021 60.000 0.00 0.00 0.00 4.44
6105 8761 1.160137 GTGCAGACCATGAGACCAAC 58.840 55.000 0.00 0.00 0.00 3.77
6109 8765 3.550437 ATAAGGTGCAGACCATGAGAC 57.450 47.619 0.00 0.00 45.98 3.36
6110 8766 3.877559 CAATAAGGTGCAGACCATGAGA 58.122 45.455 0.00 0.00 45.98 3.27
6111 8767 2.357009 GCAATAAGGTGCAGACCATGAG 59.643 50.000 0.00 0.00 45.98 2.90
6112 8768 2.368439 GCAATAAGGTGCAGACCATGA 58.632 47.619 0.00 0.00 45.98 3.07
6113 8769 2.857592 GCAATAAGGTGCAGACCATG 57.142 50.000 0.00 0.00 45.98 3.66
6145 8801 3.437213 ACATCCCATTGGCATATCATGG 58.563 45.455 8.65 8.65 0.00 3.66
6235 8891 2.936919 TCAGTGAGCAACAACCATCT 57.063 45.000 0.00 0.00 0.00 2.90
6317 8973 9.125026 CCAGCCTAACATTCTATAATTCAGTTT 57.875 33.333 0.00 0.00 0.00 2.66
6320 8976 8.944029 CATCCAGCCTAACATTCTATAATTCAG 58.056 37.037 0.00 0.00 0.00 3.02
6327 8983 4.660303 TCCACATCCAGCCTAACATTCTAT 59.340 41.667 0.00 0.00 0.00 1.98
6361 9017 4.571580 CAGGTTTTGCAGCAGAAATGAAAA 59.428 37.500 0.00 0.00 0.00 2.29



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.