AutoCloner

Multiple sequence alignment - TraesCS7B01G275800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G275800	chr7B	100.000	3668	0	0	1	3668	504961136	504964803	0.000000e+00	6774
1	TraesCS7B01G275800	chr7B	80.739	379	52	12	203	569	100005770	100006139	3.610000e-70	276
2	TraesCS7B01G275800	chr7B	80.580	345	47	10	243	575	99134827	99134491	7.870000e-62	248
3	TraesCS7B01G275800	chr7D	93.227	2953	121	30	757	3666	479287428	479290344	0.000000e+00	4272
4	TraesCS7B01G275800	chr7D	90.179	784	53	11	1	768	479285617	479286392	0.000000e+00	1000
5	TraesCS7B01G275800	chr7A	93.329	2803	150	13	890	3666	515881052	515878261	0.000000e+00	4106
6	TraesCS7B01G275800	chr7A	86.813	182	23	1	2	183	515881264	515881084	6.210000e-48	202
7	TraesCS7B01G275800	chr6B	86.255	502	53	8	203	691	130327263	130326765	6.970000e-147	531
8	TraesCS7B01G275800	chr6B	84.191	272	40	3	424	695	581221288	581221556	1.010000e-65	261
9	TraesCS7B01G275800	chr6B	79.570	279	33	16	204	468	535390352	535390620	1.050000e-40	178
10	TraesCS7B01G275800	chrUn	81.911	492	68	13	218	692	65973653	65974140	2.650000e-106	396
11	TraesCS7B01G275800	chrUn	88.421	190	20	2	696	883	308016687	308016498	1.020000e-55	228
12	TraesCS7B01G275800	chrUn	88.421	190	20	2	696	883	308020801	308020612	1.020000e-55	228
13	TraesCS7B01G275800	chrUn	89.071	183	20	0	696	878	311192453	311192635	1.020000e-55	228
14	TraesCS7B01G275800	chr4D	80.745	483	69	18	219	692	336139453	336138986	4.510000e-94	355
15	TraesCS7B01G275800	chr3D	80.039	511	72	14	205	690	13157634	13158139	5.830000e-93	351
16	TraesCS7B01G275800	chr3D	80.320	437	67	12	218	638	387771877	387771444	2.750000e-81	313
17	TraesCS7B01G275800	chr3D	83.333	186	26	5	218	401	42296654	42296836	2.270000e-37	167
18	TraesCS7B01G275800	chr5A	81.591	440	56	16	223	646	131787217	131787647	1.260000e-89	340
19	TraesCS7B01G275800	chr1A	80.435	460	60	19	218	662	486751952	486751508	1.270000e-84	324
20	TraesCS7B01G275800	chr4A	82.308	390	51	10	313	691	579845369	579844987	4.570000e-84	322
21	TraesCS7B01G275800	chr5D	81.218	394	60	7	311	692	232835945	232835554	4.600000e-79	305
22	TraesCS7B01G275800	chr5D	89.674	184	18	1	696	878	80453208	80453391	2.200000e-57	233
23	TraesCS7B01G275800	chr6A	81.180	356	47	13	351	691	609148141	609148491	6.040000e-68	268
24	TraesCS7B01G275800	chr2D	89.247	186	20	0	696	881	46191298	46191113	2.200000e-57	233
25	TraesCS7B01G275800	chr2A	89.617	183	19	0	696	878	358061421	358061603	2.200000e-57	233
26	TraesCS7B01G275800	chr2A	88.525	183	21	0	696	878	159095051	159095233	4.770000e-54	222
27	TraesCS7B01G275800	chr3B	89.560	182	19	0	700	881	216325618	216325437	7.920000e-57	231
28	TraesCS7B01G275800	chr1B	89.071	183	20	0	696	878	105938070	105938252	1.020000e-55	228
29	TraesCS7B01G275800	chr1D	79.545	264	45	8	203	463	386950788	386950531	2.910000e-41	180

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G275800	chr7B	504961136	504964803	3667	False	6774	6774	100.000	1	3668	1	chr7B.!!$F2	3667
1	TraesCS7B01G275800	chr7D	479285617	479290344	4727	False	2636	4272	91.703	1	3666	2	chr7D.!!$F1	3665
2	TraesCS7B01G275800	chr7A	515878261	515881264	3003	True	2154	4106	90.071	2	3666	2	chr7A.!!$R1	3664
3	TraesCS7B01G275800	chrUn	308016498	308020801	4303	True	228	228	88.421	696	883	2	chrUn.!!$R1	187
4	TraesCS7B01G275800	chr3D	13157634	13158139	505	False	351	351	80.039	205	690	1	chr3D.!!$F1	485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
557	573	0.674895	AGCGCTGGTCATGAGAAACC	60.675	55.0	10.39	0.00	36.03	3.27	F
985	6189	1.274712	GTGGCCCCATTGAATTTCCA	58.725	50.0	0.00	0.00	0.00	3.53	F
2124	7353	0.109086	ACGAGACTGCCATGTCTTCG	60.109	55.0	5.75	11.23	46.11	3.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1842	7071	0.458025	GGGTGATGAAGTCGTCGTCC	60.458	60.0	5.66	6.2	41.04	4.79	R
2427	7656	1.526575	CTTGGCAATCCTTGGTGCGT	61.527	55.0	0.00	0.0	41.85	5.24	R
3364	8611	0.320073	TTGTGCTACGGTGTACTGCC	60.320	55.0	0.00	0.0	0.00	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	2.030893	ACGACGTACCTTTTCATCGACA	60.031	45.455	0.00	0.00	33.88	4.35
75	76	1.964608	CTCCTGAGCCGGCATTCTCA	61.965	60.000	31.54	22.06	37.70	3.27
147	149	7.673776	GCAATGTGTTTCTTGTCGTTCATTTTT	60.674	33.333	0.00	0.00	0.00	1.94
181	183	4.392921	ACAGTCATCCCGATTGTCTTAG	57.607	45.455	0.00	0.00	40.29	2.18
193	195	7.333423	TCCCGATTGTCTTAGAATTGTAGTTTG	59.667	37.037	0.00	0.00	0.00	2.93
194	196	7.414098	CCCGATTGTCTTAGAATTGTAGTTTGG	60.414	40.741	0.00	0.00	0.00	3.28
196	198	8.717821	CGATTGTCTTAGAATTGTAGTTTGGAA	58.282	33.333	0.00	0.00	0.00	3.53
197	199	9.827411	GATTGTCTTAGAATTGTAGTTTGGAAC	57.173	33.333	0.00	0.00	0.00	3.62
198	200	8.740123	TTGTCTTAGAATTGTAGTTTGGAACA	57.260	30.769	0.00	0.00	0.00	3.18
201	203	8.837389	GTCTTAGAATTGTAGTTTGGAACAGTT	58.163	33.333	0.00	0.00	42.39	3.16
215	217	1.890876	ACAGTTGGAAATACGCAGCA	58.109	45.000	0.00	0.00	0.00	4.41
251	253	2.856000	ACTCACCTGCCAAGCCCT	60.856	61.111	0.00	0.00	0.00	5.19
296	300	1.822990	TCGCGAAGTAGTTGAATCCCT	59.177	47.619	6.20	0.00	0.00	4.20
309	313	5.014123	AGTTGAATCCCTCACAAGGACATAA	59.986	40.000	0.00	0.00	46.67	1.90
337	341	6.588348	AAAGAAAATCCGTCAAAAAGCTTG	57.412	33.333	0.00	0.00	0.00	4.01
399	404	3.855858	TGCCAAGTTTCAACAAGTTTCC	58.144	40.909	0.00	0.00	0.00	3.13
549	565	2.161855	TGATTTCAAAGCGCTGGTCAT	58.838	42.857	12.58	0.00	0.00	3.06
557	573	0.674895	AGCGCTGGTCATGAGAAACC	60.675	55.000	10.39	0.00	36.03	3.27
563	579	3.259123	GCTGGTCATGAGAAACCCAAATT	59.741	43.478	0.00	0.00	34.47	1.82
663	690	1.763770	CAGGAACCTGAGTGCCCTT	59.236	57.895	14.94	0.00	43.96	3.95
728	768	4.590850	ATCGTGATTCTGAATCGGATCA	57.409	40.909	21.70	6.27	40.84	2.92
843	6045	5.856156	TGGTTAGTTTGGATCGTAAAGTCA	58.144	37.500	5.09	0.00	0.00	3.41
846	6048	8.262227	TGGTTAGTTTGGATCGTAAAGTCATAT	58.738	33.333	5.09	0.00	0.00	1.78
883	6085	7.121974	GAATCGAGATTCTGACAACTTTTGA	57.878	36.000	16.20	0.00	42.85	2.69
884	6086	5.907197	TCGAGATTCTGACAACTTTTGAC	57.093	39.130	0.00	0.00	0.00	3.18
885	6087	4.444388	TCGAGATTCTGACAACTTTTGACG	59.556	41.667	0.00	0.00	0.00	4.35
886	6088	4.458708	GAGATTCTGACAACTTTTGACGC	58.541	43.478	0.00	0.00	0.00	5.19
887	6089	3.876914	AGATTCTGACAACTTTTGACGCA	59.123	39.130	0.00	0.00	0.00	5.24
888	6090	4.335315	AGATTCTGACAACTTTTGACGCAA	59.665	37.500	0.00	0.00	0.00	4.85
923	6125	6.839657	TCAATAAAAACCTAGGGGAAAACACA	59.160	34.615	14.81	0.00	36.25	3.72
985	6189	1.274712	GTGGCCCCATTGAATTTCCA	58.725	50.000	0.00	0.00	0.00	3.53
1133	6361	2.523016	GGCTGATCCCCCAATCCC	59.477	66.667	0.00	0.00	0.00	3.85
1165	6393	3.089284	CCACCCAAATACTCCAGGAAAC	58.911	50.000	0.00	0.00	0.00	2.78
1302	6531	3.649986	GCGCGGCACATGGATACC	61.650	66.667	8.83	0.00	0.00	2.73
1719	6948	2.574955	GCTCCTCCACACCGTCTGT	61.575	63.158	0.00	0.00	0.00	3.41
2050	7279	1.070758	ACATCGACAACAAGGACTGCT	59.929	47.619	0.00	0.00	0.00	4.24
2124	7353	0.109086	ACGAGACTGCCATGTCTTCG	60.109	55.000	5.75	11.23	46.11	3.79
2427	7656	1.234615	GGCAAGTTAGCTTCACGGCA	61.235	55.000	0.00	0.00	31.49	5.69
2614	7843	4.772231	AGCCCGGCCTTCGAGGTA	62.772	66.667	5.55	0.00	42.43	3.08
2653	7882	2.683933	ATGGCCTTCCTCCGACGT	60.684	61.111	3.32	0.00	0.00	4.34
2675	7904	6.253727	ACGTTGAATGTTGCGTGAAATTTTAA	59.746	30.769	0.00	0.00	36.16	1.52
2697	7932	0.314935	AATGTGGGTGAAAAGCAGCG	59.685	50.000	0.00	0.00	45.82	5.18
2699	7934	1.896660	GTGGGTGAAAAGCAGCGGA	60.897	57.895	0.00	0.00	45.82	5.54
2700	7935	1.074775	TGGGTGAAAAGCAGCGGAT	59.925	52.632	0.00	0.00	45.82	4.18
2701	7936	0.539438	TGGGTGAAAAGCAGCGGATT	60.539	50.000	0.00	0.00	45.82	3.01
2717	7952	6.311200	GCAGCGGATTTTGATTCAAAAGTATT	59.689	34.615	24.31	11.70	44.72	1.89
2868	8103	9.364989	TGCTTGTTGCTAATTAAATTTCCATAC	57.635	29.630	0.00	0.00	43.37	2.39
2875	8110	9.461312	TGCTAATTAAATTTCCATACAGACTGT	57.539	29.630	13.68	13.68	0.00	3.55
2897	8133	9.516314	ACTGTTTTCTGCAGTTAAGTTAATTTC	57.484	29.630	14.67	0.00	43.87	2.17
2898	8134	9.515020	CTGTTTTCTGCAGTTAAGTTAATTTCA	57.485	29.630	14.67	0.00	0.00	2.69
2929	8165	8.564574	TGATTTGGTACTGAAAAATCTACACAC	58.435	33.333	16.96	0.00	39.79	3.82
2940	8176	8.514594	TGAAAAATCTACACACAATTCATCTCC	58.485	33.333	0.00	0.00	0.00	3.71
2988	8229	6.069331	AGAAGCATCAATATGGCATCTTTCT	58.931	36.000	1.65	0.00	33.38	2.52
2990	8231	6.085555	AGCATCAATATGGCATCTTTCTTG	57.914	37.500	1.65	2.05	33.38	3.02
3048	8291	2.094390	TGTAGTCACGGGACATGCTTAC	60.094	50.000	22.01	13.47	46.80	2.34
3049	8292	0.108804	AGTCACGGGACATGCTTACG	60.109	55.000	22.01	0.00	46.80	3.18
3072	8315	2.449464	TGGATCTTGTTGGCATTGGAG	58.551	47.619	0.00	0.00	0.00	3.86
3073	8316	2.225091	TGGATCTTGTTGGCATTGGAGT	60.225	45.455	0.00	0.00	0.00	3.85
3093	8336	6.152379	GGAGTTTTCAATCTTGGAATCACAC	58.848	40.000	0.00	0.00	0.00	3.82
3109	8352	0.320697	ACACGACCTTTCCTAGCACC	59.679	55.000	0.00	0.00	0.00	5.01
3274	8521	5.344566	ACAAATCATCTTCCCCTTTTGGAT	58.655	37.500	0.00	0.00	44.07	3.41
3331	8578	6.345882	GCGAGAAAATGATACGAGTTGATACC	60.346	42.308	0.00	0.00	0.00	2.73
3364	8611	2.697751	CCTGTCTAGAGGGGAATCACAG	59.302	54.545	0.00	0.00	0.00	3.66
3375	8622	1.359848	GAATCACAGGCAGTACACCG	58.640	55.000	0.00	0.00	0.00	4.94
3429	8676	5.352569	CAGTCTTTGGACATTAGCTACCTTG	59.647	44.000	0.00	0.00	44.36	3.61
3430	8677	4.095036	GTCTTTGGACATTAGCTACCTTGC	59.905	45.833	0.00	0.00	41.75	4.01
3431	8678	3.712016	TTGGACATTAGCTACCTTGCA	57.288	42.857	0.00	0.00	34.99	4.08
3455	8702	2.556189	AGCTATCGATGTACTGCTCCTG	59.444	50.000	8.54	0.00	0.00	3.86
3480	8727	3.762407	TCTCATCCGTGAAAGGTGAAA	57.238	42.857	0.00	0.00	33.05	2.69
3551	8798	6.592607	AGTGTTATTGTCCAGTAAACCATACG	59.407	38.462	0.00	0.00	0.00	3.06
3563	8810	2.328989	CATACGCTTGCGGCCATG	59.671	61.111	19.19	14.08	37.74	3.66
3594	8841	5.424121	ACCATTCTTTGTTCTCTTCAACG	57.576	39.130	0.00	0.00	0.00	4.10
3648	8895	0.111089	GACAGCTCGTCAAAACAGCG	60.111	55.000	10.30	0.00	44.69	5.18
3666	8913	3.366121	CAGCGACATGTTACTTCAGACAG	59.634	47.826	0.00	0.00	0.00	3.51
3667	8914	3.255888	AGCGACATGTTACTTCAGACAGA	59.744	43.478	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
12	13	2.342910	AGGTACGTCGTCACAATCAC	57.657	50.000	0.00	0.00	0.00	3.06
42	43	4.331108	GCTCAGGAGAAGAAAAGACCAAT	58.669	43.478	0.00	0.00	0.00	3.16
75	76	2.231235	GCAAACGAATCACCAGGGAATT	59.769	45.455	0.00	0.00	0.00	2.17
147	149	5.451381	CGGGATGACTGTATACAACAAGCTA	60.451	44.000	7.06	0.00	37.74	3.32
181	183	6.385649	TCCAACTGTTCCAAACTACAATTC	57.614	37.500	0.00	0.00	0.00	2.17
193	195	2.414161	GCTGCGTATTTCCAACTGTTCC	60.414	50.000	0.00	0.00	0.00	3.62
194	196	2.225491	TGCTGCGTATTTCCAACTGTTC	59.775	45.455	0.00	0.00	0.00	3.18
196	198	1.890876	TGCTGCGTATTTCCAACTGT	58.109	45.000	0.00	0.00	0.00	3.55
197	199	2.031245	TGTTGCTGCGTATTTCCAACTG	60.031	45.455	0.00	0.00	37.32	3.16
198	200	2.031157	GTGTTGCTGCGTATTTCCAACT	60.031	45.455	0.00	0.00	37.32	3.16
201	203	0.515127	CGTGTTGCTGCGTATTTCCA	59.485	50.000	0.00	0.00	0.00	3.53
251	253	0.899717	GAGGCAAATCAAGGGTGGCA	60.900	55.000	0.00	0.00	40.12	4.92
255	257	0.400213	TCACGAGGCAAATCAAGGGT	59.600	50.000	0.00	0.00	0.00	4.34
380	384	6.162777	TCTTTGGAAACTTGTTGAAACTTGG	58.837	36.000	0.00	0.00	0.00	3.61
417	432	0.104487	TTTTGTGTCTACGACCGGCA	59.896	50.000	0.00	0.00	0.00	5.69
418	433	1.435577	ATTTTGTGTCTACGACCGGC	58.564	50.000	0.00	0.00	0.00	6.13
419	434	5.349270	TCAATTATTTTGTGTCTACGACCGG	59.651	40.000	0.00	0.00	0.00	5.28
455	470	7.949903	TTAATGTTGAAACTTACTACGAGCA	57.050	32.000	0.00	0.00	0.00	4.26
549	565	9.103861	GTTATGTTTTCAAATTTGGGTTTCTCA	57.896	29.630	17.90	8.89	0.00	3.27
625	652	4.502950	CCTGGTGCCTGCTTTTTATTTTGA	60.503	41.667	0.00	0.00	0.00	2.69
728	768	2.364632	CGATCCTATCATCGGAGCTCT	58.635	52.381	14.64	0.00	41.71	4.09
740	780	6.274157	AGATTCTACGATTTGCGATCCTAT	57.726	37.500	0.00	0.00	44.57	2.57
819	6021	6.469410	TGACTTTACGATCCAAACTAACCAT	58.531	36.000	0.00	0.00	0.00	3.55
865	6067	3.876914	TGCGTCAAAAGTTGTCAGAATCT	59.123	39.130	0.00	0.00	0.00	2.40
878	6080	4.366586	TGATTCTTTGCATTGCGTCAAAA	58.633	34.783	3.84	0.00	32.55	2.44
882	6084	6.630676	TTTATTGATTCTTTGCATTGCGTC	57.369	33.333	3.84	0.00	0.00	5.19
883	6085	7.290118	GTTTTTATTGATTCTTTGCATTGCGT	58.710	30.769	3.84	0.00	0.00	5.24
884	6086	6.737750	GGTTTTTATTGATTCTTTGCATTGCG	59.262	34.615	3.84	0.00	0.00	4.85
885	6087	7.809665	AGGTTTTTATTGATTCTTTGCATTGC	58.190	30.769	0.46	0.46	0.00	3.56
887	6089	9.657419	CCTAGGTTTTTATTGATTCTTTGCATT	57.343	29.630	0.00	0.00	0.00	3.56
888	6090	8.260114	CCCTAGGTTTTTATTGATTCTTTGCAT	58.740	33.333	8.29	0.00	0.00	3.96
923	6125	3.378427	GGGCGCTGATAAGAATTTGAGTT	59.622	43.478	7.64	0.00	0.00	3.01
985	6189	3.624777	CTGGCATATTCTGTTCCACCTT	58.375	45.455	0.00	0.00	0.00	3.50
1057	6261	0.965866	CTCAGTACCTCCCACGCAGA	60.966	60.000	0.00	0.00	0.00	4.26
1165	6393	2.127383	GCGGGCGTTCGAAGTTTG	60.127	61.111	0.00	0.00	0.00	2.93
1302	6531	0.329261	TGATTGCCACCTCCTCCTTG	59.671	55.000	0.00	0.00	0.00	3.61
1399	6628	2.988684	GATGTTGGGGTGGCGCAA	60.989	61.111	10.83	0.00	0.00	4.85
1404	6633	1.586154	GCTGAACGATGTTGGGGTGG	61.586	60.000	0.00	0.00	0.00	4.61
1836	7065	1.286880	GAAGTCGTCGTCCCGGAAA	59.713	57.895	0.73	0.00	0.00	3.13
1842	7071	0.458025	GGGTGATGAAGTCGTCGTCC	60.458	60.000	5.66	6.20	41.04	4.79
2199	7428	5.877012	GTGCATCTTCTCCAGATTTACAAGA	59.123	40.000	0.00	0.00	40.67	3.02
2427	7656	1.526575	CTTGGCAATCCTTGGTGCGT	61.527	55.000	0.00	0.00	41.85	5.24
2445	7674	2.569134	GTCGCCTCGAAGCTCACT	59.431	61.111	4.21	0.00	37.72	3.41
2614	7843	2.042639	GGGCAGGCCATCCACAAT	60.043	61.111	13.10	0.00	37.98	2.71
2653	7882	8.412608	TCTTTAAAATTTCACGCAACATTCAA	57.587	26.923	0.00	0.00	0.00	2.69
2675	7904	2.036346	GCTGCTTTTCACCCACATTCTT	59.964	45.455	0.00	0.00	0.00	2.52
2863	8098	4.067896	ACTGCAGAAAACAGTCTGTATGG	58.932	43.478	23.35	0.00	45.06	2.74
2872	8107	9.515020	TGAAATTAACTTAACTGCAGAAAACAG	57.485	29.630	23.35	10.77	41.08	3.16
2873	8108	9.862371	TTGAAATTAACTTAACTGCAGAAAACA	57.138	25.926	23.35	2.99	0.00	2.83
2897	8133	9.918630	AGATTTTTCAGTACCAAATCAATCTTG	57.081	29.630	14.84	0.00	38.75	3.02
2913	8149	9.552114	GAGATGAATTGTGTGTAGATTTTTCAG	57.448	33.333	0.00	0.00	0.00	3.02
3048	8291	3.243168	CCAATGCCAACAAGATCCATACG	60.243	47.826	0.00	0.00	0.00	3.06
3049	8292	3.953612	TCCAATGCCAACAAGATCCATAC	59.046	43.478	0.00	0.00	0.00	2.39
3072	8315	5.625311	GTCGTGTGATTCCAAGATTGAAAAC	59.375	40.000	0.00	0.00	0.00	2.43
3073	8316	5.278266	GGTCGTGTGATTCCAAGATTGAAAA	60.278	40.000	0.00	0.00	0.00	2.29
3093	8336	0.323629	TTGGGTGCTAGGAAAGGTCG	59.676	55.000	0.00	0.00	0.00	4.79
3109	8352	9.025041	AGGAAGATTTTTATCAAACTACCTTGG	57.975	33.333	0.00	0.00	0.00	3.61
3228	8474	5.336150	TCAACTTTGCACTCAATTTTCCA	57.664	34.783	0.00	0.00	31.33	3.53
3274	8521	4.431809	CTTTTTGTCAGAAACATGTGCCA	58.568	39.130	0.00	0.00	37.82	4.92
3331	8578	2.079158	CTAGACAGGGCACACATGTTG	58.921	52.381	0.00	0.00	45.39	3.33
3364	8611	0.320073	TTGTGCTACGGTGTACTGCC	60.320	55.000	0.00	0.00	0.00	4.85
3396	8643	7.120432	GCTAATGTCCAAAGACTGAAATCTCTT	59.880	37.037	0.00	0.00	43.91	2.85
3429	8676	2.057316	CAGTACATCGATAGCTGCTGC	58.943	52.381	13.43	7.62	35.14	5.25
3430	8677	2.057316	GCAGTACATCGATAGCTGCTG	58.943	52.381	26.73	18.68	46.20	4.41
3431	8678	2.430546	GCAGTACATCGATAGCTGCT	57.569	50.000	26.73	7.57	46.20	4.24
3455	8702	3.058914	CACCTTTCACGGATGAGAACAAC	60.059	47.826	0.00	0.00	35.83	3.32
3480	8727	6.238648	CGAAAAGATTGTAAAGAGGTTGTGGT	60.239	38.462	0.00	0.00	0.00	4.16
3492	8739	3.126171	CGGCCATCACGAAAAGATTGTAA	59.874	43.478	2.24	0.00	0.00	2.41
3494	8741	1.468520	CGGCCATCACGAAAAGATTGT	59.531	47.619	2.24	0.00	0.00	2.71
3517	8764	6.539173	ACTGGACAATAACACTAATGGACAA	58.461	36.000	0.00	0.00	0.00	3.18
3563	8810	3.375782	ACAAAGAATGGTTCAGCTTGC	57.624	42.857	0.00	0.00	0.00	4.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.