Multiple sequence alignment - TraesCS7B01G275700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G275700 chr7B 100.000 4121 0 0 1 4121 504838963 504834843 0.000000e+00 7611.0
1 TraesCS7B01G275700 chr7B 84.971 346 42 8 2713 3055 553148279 553147941 3.940000e-90 342.0
2 TraesCS7B01G275700 chr7B 91.304 115 8 2 1119 1232 553148272 553148385 5.520000e-34 156.0
3 TraesCS7B01G275700 chr7D 95.325 2845 96 14 525 3354 479112721 479109899 0.000000e+00 4482.0
4 TraesCS7B01G275700 chr7D 89.787 705 27 14 3409 4101 479109897 479109226 0.000000e+00 861.0
5 TraesCS7B01G275700 chr7D 94.030 134 8 0 249 382 479113153 479113020 1.940000e-48 204.0
6 TraesCS7B01G275700 chr7D 100.000 28 0 0 4094 4121 479108751 479108724 7.000000e-03 52.8
7 TraesCS7B01G275700 chr7A 91.071 2240 112 37 1120 3334 515983536 515985712 0.000000e+00 2948.0
8 TraesCS7B01G275700 chr7A 82.544 676 36 28 3465 4121 515985813 515986425 1.700000e-143 520.0
9 TraesCS7B01G275700 chr7A 87.923 207 9 8 634 830 515983267 515983467 3.200000e-56 230.0
10 TraesCS7B01G275700 chr3B 96.800 250 8 0 1 250 299059209 299059458 6.370000e-113 418.0
11 TraesCS7B01G275700 chr3B 96.400 250 9 0 1 250 402655061 402654812 2.960000e-111 412.0
12 TraesCS7B01G275700 chr3B 96.761 247 8 0 1 247 668527915 668528161 2.960000e-111 412.0
13 TraesCS7B01G275700 chr3B 96.400 250 9 0 1 250 677785727 677785478 2.960000e-111 412.0
14 TraesCS7B01G275700 chr1B 97.166 247 7 0 1 247 492554391 492554637 6.370000e-113 418.0
15 TraesCS7B01G275700 chr1B 96.761 247 8 0 1 247 47271169 47271415 2.960000e-111 412.0
16 TraesCS7B01G275700 chr1B 96.400 250 9 0 1 250 280730699 280730450 2.960000e-111 412.0
17 TraesCS7B01G275700 chr1B 96.761 247 8 0 1 247 315938060 315938306 2.960000e-111 412.0
18 TraesCS7B01G275700 chr4B 96.761 247 8 0 1 247 181442435 181442681 2.960000e-111 412.0
19 TraesCS7B01G275700 chr4A 96.000 125 5 0 399 523 743484788 743484912 1.940000e-48 204.0
20 TraesCS7B01G275700 chr4A 95.200 125 6 0 399 523 624884600 624884476 9.040000e-47 198.0
21 TraesCS7B01G275700 chr1A 94.656 131 7 0 395 525 492278614 492278744 1.940000e-48 204.0
22 TraesCS7B01G275700 chr2B 95.312 128 5 1 397 523 763496302 763496429 6.990000e-48 202.0
23 TraesCS7B01G275700 chr6B 95.238 126 6 0 400 525 703295728 703295603 2.510000e-47 200.0
24 TraesCS7B01G275700 chr6B 95.200 125 6 0 399 523 20143026 20143150 9.040000e-47 198.0
25 TraesCS7B01G275700 chr6D 95.161 124 6 0 400 523 12347335 12347212 3.250000e-46 196.0
26 TraesCS7B01G275700 chr5D 95.122 123 6 0 401 523 50996157 50996279 1.170000e-45 195.0
27 TraesCS7B01G275700 chr5A 94.444 126 7 0 398 523 601397606 601397481 1.170000e-45 195.0
28 TraesCS7B01G275700 chr5B 92.857 56 4 0 342 397 418369662 418369717 9.490000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G275700 chr7B 504834843 504838963 4120 True 7611.000000 7611 100.000000 1 4121 1 chr7B.!!$R1 4120
1 TraesCS7B01G275700 chr7D 479108724 479113153 4429 True 1399.950000 4482 94.785500 249 4121 4 chr7D.!!$R1 3872
2 TraesCS7B01G275700 chr7A 515983267 515986425 3158 False 1232.666667 2948 87.179333 634 4121 3 chr7A.!!$F1 3487

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.033796 ATGTCCCCATGCTGTCAAGG 60.034 55.0 0.00 0.0 0.00 3.61 F
427 726 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.0 0.00 0.0 36.73 5.73 F
961 1272 0.108567 TCTAATAACTGCGCCGCACA 60.109 50.0 8.16 0.0 33.79 4.57 F
973 1284 0.248377 GCCGCACACGTACTAGGTAG 60.248 60.0 0.00 0.0 37.70 3.18 F
994 1305 0.390472 AGTAGGCTTCAAGTGCTCGC 60.390 55.0 0.00 0.0 0.00 5.03 F
1800 2114 0.677731 CAAAGAAGGCTCATCCCGCA 60.678 55.0 0.00 0.0 34.51 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 2078 0.107410 TTGCACTTGTTCCTCGTGGT 60.107 50.000 2.99 0.0 34.23 4.16 R
1887 2201 0.969917 AGCAGAGCAGGACGATCACT 60.970 55.000 0.00 0.0 30.15 3.41 R
2514 2832 1.120530 GGAGGTCGCCTTTCTCCATA 58.879 55.000 0.00 0.0 44.72 2.74 R
2739 3063 2.320587 GCTGAGGAGCACGTTGGTG 61.321 63.158 0.00 0.0 45.46 4.17 R
3051 3384 2.676608 CCCACCACCTGCTGCATA 59.323 61.111 1.31 0.0 0.00 3.14 R
3334 3678 0.028770 CGCAGCAACACGAGGAAAAA 59.971 50.000 0.00 0.0 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.685139 GACATGAACTCCAAGTCTCCA 57.315 47.619 0.00 0.00 39.62 3.86
21 22 3.594134 GACATGAACTCCAAGTCTCCAG 58.406 50.000 0.00 0.00 39.62 3.86
22 23 2.304180 ACATGAACTCCAAGTCTCCAGG 59.696 50.000 0.00 0.00 0.00 4.45
23 24 2.398754 TGAACTCCAAGTCTCCAGGA 57.601 50.000 0.00 0.00 0.00 3.86
24 25 2.907892 TGAACTCCAAGTCTCCAGGAT 58.092 47.619 0.00 0.00 0.00 3.24
25 26 2.834549 TGAACTCCAAGTCTCCAGGATC 59.165 50.000 0.00 0.00 0.00 3.36
26 27 2.630889 ACTCCAAGTCTCCAGGATCA 57.369 50.000 0.00 0.00 0.00 2.92
27 28 3.127791 ACTCCAAGTCTCCAGGATCAT 57.872 47.619 0.00 0.00 0.00 2.45
28 29 4.271807 ACTCCAAGTCTCCAGGATCATA 57.728 45.455 0.00 0.00 0.00 2.15
29 30 4.825445 ACTCCAAGTCTCCAGGATCATAT 58.175 43.478 0.00 0.00 0.00 1.78
30 31 5.222870 ACTCCAAGTCTCCAGGATCATATT 58.777 41.667 0.00 0.00 0.00 1.28
31 32 5.306678 ACTCCAAGTCTCCAGGATCATATTC 59.693 44.000 0.00 0.00 0.00 1.75
32 33 5.471424 TCCAAGTCTCCAGGATCATATTCT 58.529 41.667 0.00 0.00 0.00 2.40
33 34 5.907662 TCCAAGTCTCCAGGATCATATTCTT 59.092 40.000 0.00 0.00 0.00 2.52
34 35 6.042552 TCCAAGTCTCCAGGATCATATTCTTC 59.957 42.308 0.00 0.00 0.00 2.87
35 36 6.229733 CAAGTCTCCAGGATCATATTCTTCC 58.770 44.000 0.00 0.00 0.00 3.46
36 37 5.471424 AGTCTCCAGGATCATATTCTTCCA 58.529 41.667 0.00 0.00 31.65 3.53
37 38 5.907662 AGTCTCCAGGATCATATTCTTCCAA 59.092 40.000 0.00 0.00 31.65 3.53
38 39 6.388100 AGTCTCCAGGATCATATTCTTCCAAA 59.612 38.462 0.00 0.00 31.65 3.28
39 40 7.056635 GTCTCCAGGATCATATTCTTCCAAAA 58.943 38.462 0.00 0.00 31.65 2.44
40 41 7.557719 GTCTCCAGGATCATATTCTTCCAAAAA 59.442 37.037 0.00 0.00 31.65 1.94
56 57 2.050477 AAAAATCACGCTGCCGAAAG 57.950 45.000 0.00 0.00 38.29 2.62
57 58 0.951558 AAAATCACGCTGCCGAAAGT 59.048 45.000 0.00 0.00 38.29 2.66
58 59 0.951558 AAATCACGCTGCCGAAAGTT 59.048 45.000 0.00 0.00 38.29 2.66
59 60 0.951558 AATCACGCTGCCGAAAGTTT 59.048 45.000 0.00 0.00 38.29 2.66
60 61 0.517316 ATCACGCTGCCGAAAGTTTC 59.483 50.000 5.47 5.47 38.29 2.78
61 62 0.812014 TCACGCTGCCGAAAGTTTCA 60.812 50.000 15.67 0.00 38.29 2.69
62 63 0.238289 CACGCTGCCGAAAGTTTCAT 59.762 50.000 15.67 0.00 38.29 2.57
63 64 0.951558 ACGCTGCCGAAAGTTTCATT 59.048 45.000 15.67 0.00 38.29 2.57
64 65 1.069227 ACGCTGCCGAAAGTTTCATTC 60.069 47.619 15.67 4.46 38.29 2.67
65 66 1.729149 CGCTGCCGAAAGTTTCATTCC 60.729 52.381 15.67 1.47 36.29 3.01
66 67 1.729149 GCTGCCGAAAGTTTCATTCCG 60.729 52.381 15.67 1.81 0.00 4.30
67 68 1.535462 CTGCCGAAAGTTTCATTCCGT 59.465 47.619 15.67 0.00 0.00 4.69
68 69 1.950909 TGCCGAAAGTTTCATTCCGTT 59.049 42.857 15.67 0.00 0.00 4.44
69 70 2.359531 TGCCGAAAGTTTCATTCCGTTT 59.640 40.909 15.67 0.00 0.00 3.60
70 71 2.724174 GCCGAAAGTTTCATTCCGTTTG 59.276 45.455 15.67 0.00 0.00 2.93
71 72 3.305110 CCGAAAGTTTCATTCCGTTTGG 58.695 45.455 15.67 1.74 0.00 3.28
72 73 3.003897 CCGAAAGTTTCATTCCGTTTGGA 59.996 43.478 15.67 0.00 44.61 3.53
73 74 3.972502 CGAAAGTTTCATTCCGTTTGGAC 59.027 43.478 15.67 0.00 46.45 4.02
74 75 4.261031 CGAAAGTTTCATTCCGTTTGGACT 60.261 41.667 15.67 0.00 46.45 3.85
75 76 4.830826 AAGTTTCATTCCGTTTGGACTC 57.169 40.909 0.00 0.00 46.45 3.36
76 77 3.146847 AGTTTCATTCCGTTTGGACTCC 58.853 45.455 0.00 0.00 46.45 3.85
77 78 1.803334 TTCATTCCGTTTGGACTCCG 58.197 50.000 0.00 0.00 46.45 4.63
78 79 0.682852 TCATTCCGTTTGGACTCCGT 59.317 50.000 0.00 0.00 46.45 4.69
79 80 1.071071 TCATTCCGTTTGGACTCCGTT 59.929 47.619 0.00 0.00 46.45 4.44
80 81 1.877443 CATTCCGTTTGGACTCCGTTT 59.123 47.619 0.00 0.00 46.45 3.60
81 82 1.301423 TTCCGTTTGGACTCCGTTTG 58.699 50.000 0.00 0.00 46.45 2.93
82 83 0.464870 TCCGTTTGGACTCCGTTTGA 59.535 50.000 0.00 0.00 40.17 2.69
83 84 1.071071 TCCGTTTGGACTCCGTTTGAT 59.929 47.619 0.00 0.00 40.17 2.57
84 85 2.299582 TCCGTTTGGACTCCGTTTGATA 59.700 45.455 0.00 0.00 40.17 2.15
85 86 3.055675 TCCGTTTGGACTCCGTTTGATAT 60.056 43.478 0.00 0.00 40.17 1.63
86 87 3.687698 CCGTTTGGACTCCGTTTGATATT 59.312 43.478 0.00 0.00 37.49 1.28
87 88 4.201783 CCGTTTGGACTCCGTTTGATATTC 60.202 45.833 0.00 0.00 37.49 1.75
88 89 4.201783 CGTTTGGACTCCGTTTGATATTCC 60.202 45.833 0.00 0.00 0.00 3.01
89 90 4.837093 TTGGACTCCGTTTGATATTCCT 57.163 40.909 0.00 0.00 0.00 3.36
90 91 4.837093 TGGACTCCGTTTGATATTCCTT 57.163 40.909 0.00 0.00 0.00 3.36
91 92 5.174037 TGGACTCCGTTTGATATTCCTTT 57.826 39.130 0.00 0.00 0.00 3.11
92 93 5.566469 TGGACTCCGTTTGATATTCCTTTT 58.434 37.500 0.00 0.00 0.00 2.27
93 94 5.646360 TGGACTCCGTTTGATATTCCTTTTC 59.354 40.000 0.00 0.00 0.00 2.29
94 95 5.880887 GGACTCCGTTTGATATTCCTTTTCT 59.119 40.000 0.00 0.00 0.00 2.52
95 96 6.374613 GGACTCCGTTTGATATTCCTTTTCTT 59.625 38.462 0.00 0.00 0.00 2.52
96 97 7.379098 ACTCCGTTTGATATTCCTTTTCTTC 57.621 36.000 0.00 0.00 0.00 2.87
97 98 6.092259 ACTCCGTTTGATATTCCTTTTCTTCG 59.908 38.462 0.00 0.00 0.00 3.79
98 99 6.167685 TCCGTTTGATATTCCTTTTCTTCGA 58.832 36.000 0.00 0.00 0.00 3.71
99 100 6.651643 TCCGTTTGATATTCCTTTTCTTCGAA 59.348 34.615 0.00 0.00 0.00 3.71
100 101 7.173562 TCCGTTTGATATTCCTTTTCTTCGAAA 59.826 33.333 0.00 0.00 0.00 3.46
101 102 7.968405 CCGTTTGATATTCCTTTTCTTCGAAAT 59.032 33.333 0.00 0.00 0.00 2.17
102 103 9.982291 CGTTTGATATTCCTTTTCTTCGAAATA 57.018 29.630 0.00 0.00 0.00 1.40
106 107 9.884636 TGATATTCCTTTTCTTCGAAATACTGA 57.115 29.630 0.00 0.00 0.00 3.41
110 111 7.795482 TCCTTTTCTTCGAAATACTGAAACA 57.205 32.000 8.53 2.26 0.00 2.83
111 112 7.861630 TCCTTTTCTTCGAAATACTGAAACAG 58.138 34.615 8.53 9.10 37.52 3.16
112 113 7.041372 TCCTTTTCTTCGAAATACTGAAACAGG 60.041 37.037 18.83 18.83 35.51 4.00
113 114 5.607119 TTCTTCGAAATACTGAAACAGGC 57.393 39.130 0.00 0.00 35.51 4.85
114 115 4.637276 TCTTCGAAATACTGAAACAGGCA 58.363 39.130 0.00 0.00 35.51 4.75
115 116 5.060506 TCTTCGAAATACTGAAACAGGCAA 58.939 37.500 0.00 0.00 35.51 4.52
116 117 5.705441 TCTTCGAAATACTGAAACAGGCAAT 59.295 36.000 0.00 0.00 35.51 3.56
117 118 6.876789 TCTTCGAAATACTGAAACAGGCAATA 59.123 34.615 0.00 0.00 35.51 1.90
118 119 7.389330 TCTTCGAAATACTGAAACAGGCAATAA 59.611 33.333 0.00 0.00 35.51 1.40
119 120 7.441890 TCGAAATACTGAAACAGGCAATAAA 57.558 32.000 0.00 0.00 35.51 1.40
120 121 7.877003 TCGAAATACTGAAACAGGCAATAAAA 58.123 30.769 0.00 0.00 35.51 1.52
121 122 7.806014 TCGAAATACTGAAACAGGCAATAAAAC 59.194 33.333 0.00 0.00 35.51 2.43
122 123 7.593273 CGAAATACTGAAACAGGCAATAAAACA 59.407 33.333 0.00 0.00 35.51 2.83
123 124 8.816640 AAATACTGAAACAGGCAATAAAACAG 57.183 30.769 0.00 0.00 35.51 3.16
124 125 4.620982 ACTGAAACAGGCAATAAAACAGC 58.379 39.130 0.00 0.00 35.51 4.40
125 126 4.099266 ACTGAAACAGGCAATAAAACAGCA 59.901 37.500 0.00 0.00 35.51 4.41
126 127 5.016051 TGAAACAGGCAATAAAACAGCAA 57.984 34.783 0.00 0.00 0.00 3.91
127 128 5.609423 TGAAACAGGCAATAAAACAGCAAT 58.391 33.333 0.00 0.00 0.00 3.56
128 129 6.753180 TGAAACAGGCAATAAAACAGCAATA 58.247 32.000 0.00 0.00 0.00 1.90
129 130 7.385267 TGAAACAGGCAATAAAACAGCAATAT 58.615 30.769 0.00 0.00 0.00 1.28
130 131 7.331440 TGAAACAGGCAATAAAACAGCAATATG 59.669 33.333 0.00 0.00 0.00 1.78
131 132 5.663456 ACAGGCAATAAAACAGCAATATGG 58.337 37.500 0.00 0.00 0.00 2.74
132 133 5.421693 ACAGGCAATAAAACAGCAATATGGA 59.578 36.000 0.00 0.00 0.00 3.41
133 134 5.750067 CAGGCAATAAAACAGCAATATGGAC 59.250 40.000 0.00 0.00 0.00 4.02
134 135 5.658190 AGGCAATAAAACAGCAATATGGACT 59.342 36.000 0.00 0.00 0.00 3.85
135 136 5.750067 GGCAATAAAACAGCAATATGGACTG 59.250 40.000 0.00 0.00 37.45 3.51
136 137 5.750067 GCAATAAAACAGCAATATGGACTGG 59.250 40.000 6.52 0.00 35.70 4.00
137 138 6.275335 CAATAAAACAGCAATATGGACTGGG 58.725 40.000 6.52 0.00 35.70 4.45
138 139 1.767759 AACAGCAATATGGACTGGGC 58.232 50.000 6.52 0.00 35.70 5.36
139 140 0.106519 ACAGCAATATGGACTGGGCC 60.107 55.000 0.00 0.00 35.70 5.80
140 141 0.184451 CAGCAATATGGACTGGGCCT 59.816 55.000 4.53 0.00 0.00 5.19
141 142 0.475906 AGCAATATGGACTGGGCCTC 59.524 55.000 4.53 0.00 0.00 4.70
142 143 0.538287 GCAATATGGACTGGGCCTCC 60.538 60.000 4.53 4.73 0.00 4.30
143 144 0.846015 CAATATGGACTGGGCCTCCA 59.154 55.000 16.15 16.15 42.17 3.86
153 154 2.280308 TGGGCCTCCAGTTAATAGGT 57.720 50.000 4.53 0.00 38.32 3.08
154 155 2.568979 TGGGCCTCCAGTTAATAGGTT 58.431 47.619 4.53 0.00 38.32 3.50
155 156 3.738434 TGGGCCTCCAGTTAATAGGTTA 58.262 45.455 4.53 0.00 38.32 2.85
156 157 3.714798 TGGGCCTCCAGTTAATAGGTTAG 59.285 47.826 4.53 0.00 38.32 2.34
157 158 3.715315 GGGCCTCCAGTTAATAGGTTAGT 59.285 47.826 0.84 0.00 32.67 2.24
158 159 4.202336 GGGCCTCCAGTTAATAGGTTAGTC 60.202 50.000 0.84 0.00 32.67 2.59
159 160 4.202336 GGCCTCCAGTTAATAGGTTAGTCC 60.202 50.000 0.00 0.00 32.67 3.85
160 161 4.202336 GCCTCCAGTTAATAGGTTAGTCCC 60.202 50.000 0.00 0.00 36.75 4.46
161 162 4.966805 CCTCCAGTTAATAGGTTAGTCCCA 59.033 45.833 0.00 0.00 36.75 4.37
162 163 5.427481 CCTCCAGTTAATAGGTTAGTCCCAA 59.573 44.000 0.00 0.00 36.75 4.12
163 164 6.069847 CCTCCAGTTAATAGGTTAGTCCCAAA 60.070 42.308 0.00 0.00 36.75 3.28
164 165 7.332433 TCCAGTTAATAGGTTAGTCCCAAAA 57.668 36.000 0.00 0.00 36.75 2.44
165 166 7.399634 TCCAGTTAATAGGTTAGTCCCAAAAG 58.600 38.462 0.00 0.00 36.75 2.27
166 167 7.017850 TCCAGTTAATAGGTTAGTCCCAAAAGT 59.982 37.037 0.00 0.00 36.75 2.66
167 168 8.323567 CCAGTTAATAGGTTAGTCCCAAAAGTA 58.676 37.037 0.00 0.00 36.75 2.24
168 169 9.729281 CAGTTAATAGGTTAGTCCCAAAAGTAA 57.271 33.333 0.00 0.00 36.75 2.24
208 209 9.581099 AATAAAGCCCGTAATAATTCAAAACAG 57.419 29.630 0.00 0.00 0.00 3.16
209 210 6.827586 AAGCCCGTAATAATTCAAAACAGA 57.172 33.333 0.00 0.00 0.00 3.41
210 211 7.404671 AAGCCCGTAATAATTCAAAACAGAT 57.595 32.000 0.00 0.00 0.00 2.90
211 212 8.514330 AAGCCCGTAATAATTCAAAACAGATA 57.486 30.769 0.00 0.00 0.00 1.98
212 213 8.514330 AGCCCGTAATAATTCAAAACAGATAA 57.486 30.769 0.00 0.00 0.00 1.75
213 214 9.131791 AGCCCGTAATAATTCAAAACAGATAAT 57.868 29.630 0.00 0.00 0.00 1.28
251 252 9.587772 AATGCTTCATACGTTATAGATATGTCC 57.412 33.333 0.00 0.00 0.00 4.02
252 253 7.544622 TGCTTCATACGTTATAGATATGTCCC 58.455 38.462 0.00 0.00 0.00 4.46
253 254 6.979238 GCTTCATACGTTATAGATATGTCCCC 59.021 42.308 0.00 0.00 0.00 4.81
254 255 7.363530 GCTTCATACGTTATAGATATGTCCCCA 60.364 40.741 0.00 0.00 0.00 4.96
255 256 8.603898 TTCATACGTTATAGATATGTCCCCAT 57.396 34.615 0.00 0.00 34.97 4.00
256 257 8.007405 TCATACGTTATAGATATGTCCCCATG 57.993 38.462 0.00 0.00 32.29 3.66
265 266 0.033796 ATGTCCCCATGCTGTCAAGG 60.034 55.000 0.00 0.00 0.00 3.61
282 283 1.057851 AGGTCGGGAAGGTGAACCAA 61.058 55.000 1.62 0.00 38.89 3.67
334 335 3.118592 GGAGAAGAACATGGGAAGATCGT 60.119 47.826 0.00 0.00 0.00 3.73
343 344 1.573829 GGGAAGATCGTGCGCACAAA 61.574 55.000 37.03 25.73 0.00 2.83
353 354 2.135933 GTGCGCACAAAGTAGACTCTT 58.864 47.619 34.52 0.00 0.00 2.85
402 701 6.659745 AACCCTAGGTTTTTCGCTTATTTT 57.340 33.333 8.29 0.00 44.33 1.82
403 702 6.659745 ACCCTAGGTTTTTCGCTTATTTTT 57.340 33.333 8.29 0.00 27.29 1.94
425 724 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
426 725 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
427 726 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
428 727 0.549169 AAAAGGAGGATGACCCCCGA 60.549 55.000 0.00 0.00 36.73 5.14
429 728 1.272554 AAAGGAGGATGACCCCCGAC 61.273 60.000 0.00 0.00 36.73 4.79
430 729 3.162154 GGAGGATGACCCCCGACC 61.162 72.222 0.00 0.00 36.73 4.79
431 730 2.041819 GAGGATGACCCCCGACCT 60.042 66.667 0.00 0.00 36.73 3.85
432 731 2.041819 AGGATGACCCCCGACCTC 60.042 66.667 0.00 0.00 36.73 3.85
433 732 2.041819 GGATGACCCCCGACCTCT 60.042 66.667 0.00 0.00 0.00 3.69
434 733 2.435693 GGATGACCCCCGACCTCTG 61.436 68.421 0.00 0.00 0.00 3.35
435 734 3.083997 ATGACCCCCGACCTCTGC 61.084 66.667 0.00 0.00 0.00 4.26
436 735 3.924013 ATGACCCCCGACCTCTGCA 62.924 63.158 0.00 0.00 0.00 4.41
437 736 3.083997 GACCCCCGACCTCTGCAT 61.084 66.667 0.00 0.00 0.00 3.96
438 737 3.083997 ACCCCCGACCTCTGCATC 61.084 66.667 0.00 0.00 0.00 3.91
439 738 2.765807 CCCCCGACCTCTGCATCT 60.766 66.667 0.00 0.00 0.00 2.90
440 739 2.503061 CCCCGACCTCTGCATCTG 59.497 66.667 0.00 0.00 0.00 2.90
441 740 2.503061 CCCGACCTCTGCATCTGG 59.497 66.667 0.00 0.00 0.00 3.86
442 741 2.362369 CCCGACCTCTGCATCTGGT 61.362 63.158 5.29 5.29 36.70 4.00
443 742 1.043116 CCCGACCTCTGCATCTGGTA 61.043 60.000 5.56 0.00 33.74 3.25
444 743 0.387202 CCGACCTCTGCATCTGGTAG 59.613 60.000 5.56 5.91 33.74 3.18
445 744 1.393603 CGACCTCTGCATCTGGTAGA 58.606 55.000 5.56 0.00 36.73 2.59
446 745 1.959985 CGACCTCTGCATCTGGTAGAT 59.040 52.381 5.56 0.00 37.62 1.98
455 754 3.667497 CATCTGGTAGATGCATACGGT 57.333 47.619 0.00 0.00 44.69 4.83
456 755 3.579709 CATCTGGTAGATGCATACGGTC 58.420 50.000 0.00 0.00 44.69 4.79
457 756 2.661718 TCTGGTAGATGCATACGGTCA 58.338 47.619 0.00 0.00 0.00 4.02
458 757 2.361119 TCTGGTAGATGCATACGGTCAC 59.639 50.000 0.00 0.00 0.00 3.67
459 758 2.362397 CTGGTAGATGCATACGGTCACT 59.638 50.000 0.00 0.00 0.00 3.41
460 759 2.764010 TGGTAGATGCATACGGTCACTT 59.236 45.455 0.00 0.00 0.00 3.16
461 760 3.196901 TGGTAGATGCATACGGTCACTTT 59.803 43.478 0.00 0.00 0.00 2.66
462 761 4.403113 TGGTAGATGCATACGGTCACTTTA 59.597 41.667 0.00 0.00 0.00 1.85
463 762 5.069914 TGGTAGATGCATACGGTCACTTTAT 59.930 40.000 0.00 0.00 0.00 1.40
464 763 5.989777 GGTAGATGCATACGGTCACTTTATT 59.010 40.000 0.00 0.00 0.00 1.40
465 764 5.991328 AGATGCATACGGTCACTTTATTG 57.009 39.130 0.00 0.00 0.00 1.90
466 765 5.670485 AGATGCATACGGTCACTTTATTGA 58.330 37.500 0.00 0.00 0.00 2.57
467 766 6.291377 AGATGCATACGGTCACTTTATTGAT 58.709 36.000 0.00 0.00 0.00 2.57
468 767 6.767902 AGATGCATACGGTCACTTTATTGATT 59.232 34.615 0.00 0.00 0.00 2.57
469 768 7.931407 AGATGCATACGGTCACTTTATTGATTA 59.069 33.333 0.00 0.00 0.00 1.75
470 769 8.621532 ATGCATACGGTCACTTTATTGATTAT 57.378 30.769 0.00 0.00 0.00 1.28
471 770 9.719355 ATGCATACGGTCACTTTATTGATTATA 57.281 29.630 0.00 0.00 0.00 0.98
472 771 8.984764 TGCATACGGTCACTTTATTGATTATAC 58.015 33.333 0.00 0.00 0.00 1.47
473 772 9.204570 GCATACGGTCACTTTATTGATTATACT 57.795 33.333 0.00 0.00 0.00 2.12
475 774 7.925703 ACGGTCACTTTATTGATTATACTCG 57.074 36.000 0.00 0.00 0.00 4.18
476 775 7.709947 ACGGTCACTTTATTGATTATACTCGA 58.290 34.615 0.00 0.00 0.00 4.04
477 776 7.861372 ACGGTCACTTTATTGATTATACTCGAG 59.139 37.037 11.84 11.84 0.00 4.04
478 777 7.326305 CGGTCACTTTATTGATTATACTCGAGG 59.674 40.741 18.41 0.00 0.00 4.63
479 778 8.358148 GGTCACTTTATTGATTATACTCGAGGA 58.642 37.037 18.41 9.15 0.00 3.71
480 779 9.182933 GTCACTTTATTGATTATACTCGAGGAC 57.817 37.037 18.41 4.21 0.00 3.85
481 780 8.358148 TCACTTTATTGATTATACTCGAGGACC 58.642 37.037 18.41 0.00 0.00 4.46
482 781 8.361139 CACTTTATTGATTATACTCGAGGACCT 58.639 37.037 18.41 0.00 0.00 3.85
483 782 8.925338 ACTTTATTGATTATACTCGAGGACCTT 58.075 33.333 18.41 0.00 0.00 3.50
486 785 7.834881 ATTGATTATACTCGAGGACCTTACA 57.165 36.000 18.41 5.89 0.00 2.41
487 786 7.649533 TTGATTATACTCGAGGACCTTACAA 57.350 36.000 18.41 11.33 0.00 2.41
488 787 7.649533 TGATTATACTCGAGGACCTTACAAA 57.350 36.000 18.41 0.00 0.00 2.83
489 788 7.713750 TGATTATACTCGAGGACCTTACAAAG 58.286 38.462 18.41 0.00 0.00 2.77
490 789 7.341256 TGATTATACTCGAGGACCTTACAAAGT 59.659 37.037 18.41 0.00 0.00 2.66
491 790 8.757982 ATTATACTCGAGGACCTTACAAAGTA 57.242 34.615 18.41 0.57 0.00 2.24
492 791 8.757982 TTATACTCGAGGACCTTACAAAGTAT 57.242 34.615 18.41 7.71 34.20 2.12
493 792 5.997384 ACTCGAGGACCTTACAAAGTATT 57.003 39.130 18.41 0.00 0.00 1.89
494 793 8.757982 ATACTCGAGGACCTTACAAAGTATTA 57.242 34.615 18.41 0.00 0.00 0.98
495 794 6.861144 ACTCGAGGACCTTACAAAGTATTAC 58.139 40.000 18.41 0.00 0.00 1.89
496 795 6.435277 ACTCGAGGACCTTACAAAGTATTACA 59.565 38.462 18.41 0.00 0.00 2.41
497 796 7.039504 ACTCGAGGACCTTACAAAGTATTACAA 60.040 37.037 18.41 0.00 0.00 2.41
498 797 7.844009 TCGAGGACCTTACAAAGTATTACAAT 58.156 34.615 0.00 0.00 0.00 2.71
499 798 8.970020 TCGAGGACCTTACAAAGTATTACAATA 58.030 33.333 0.00 0.00 0.00 1.90
500 799 9.590451 CGAGGACCTTACAAAGTATTACAATAA 57.410 33.333 0.00 0.00 0.00 1.40
506 805 9.730420 CCTTACAAAGTATTACAATAATGTGCC 57.270 33.333 0.00 0.00 40.84 5.01
509 808 8.574251 ACAAAGTATTACAATAATGTGCCTGA 57.426 30.769 0.00 0.00 40.84 3.86
510 809 9.019656 ACAAAGTATTACAATAATGTGCCTGAA 57.980 29.630 0.00 0.00 40.84 3.02
513 812 8.396272 AGTATTACAATAATGTGCCTGAATCC 57.604 34.615 0.00 0.00 40.84 3.01
514 813 7.998383 AGTATTACAATAATGTGCCTGAATCCA 59.002 33.333 0.00 0.00 40.84 3.41
515 814 4.989279 ACAATAATGTGCCTGAATCCAC 57.011 40.909 0.00 0.00 38.69 4.02
516 815 4.603131 ACAATAATGTGCCTGAATCCACT 58.397 39.130 0.00 0.00 38.69 4.00
517 816 5.754782 ACAATAATGTGCCTGAATCCACTA 58.245 37.500 0.00 0.00 38.69 2.74
518 817 6.367983 ACAATAATGTGCCTGAATCCACTAT 58.632 36.000 0.00 0.00 38.69 2.12
519 818 6.488006 ACAATAATGTGCCTGAATCCACTATC 59.512 38.462 0.00 0.00 38.69 2.08
520 819 4.785346 AATGTGCCTGAATCCACTATCT 57.215 40.909 0.00 0.00 33.26 1.98
521 820 4.785346 ATGTGCCTGAATCCACTATCTT 57.215 40.909 0.00 0.00 33.26 2.40
522 821 3.877559 TGTGCCTGAATCCACTATCTTG 58.122 45.455 0.00 0.00 33.26 3.02
523 822 3.519107 TGTGCCTGAATCCACTATCTTGA 59.481 43.478 0.00 0.00 33.26 3.02
524 823 3.873952 GTGCCTGAATCCACTATCTTGAC 59.126 47.826 0.00 0.00 0.00 3.18
525 824 3.118261 TGCCTGAATCCACTATCTTGACC 60.118 47.826 0.00 0.00 0.00 4.02
526 825 3.135530 GCCTGAATCCACTATCTTGACCT 59.864 47.826 0.00 0.00 0.00 3.85
527 826 4.345257 GCCTGAATCCACTATCTTGACCTA 59.655 45.833 0.00 0.00 0.00 3.08
528 827 5.510520 GCCTGAATCCACTATCTTGACCTAG 60.511 48.000 0.00 0.00 0.00 3.02
529 828 5.011533 CCTGAATCCACTATCTTGACCTAGG 59.988 48.000 7.41 7.41 0.00 3.02
530 829 5.529289 TGAATCCACTATCTTGACCTAGGT 58.471 41.667 16.26 16.26 0.00 3.08
531 830 5.964477 TGAATCCACTATCTTGACCTAGGTT 59.036 40.000 17.53 1.47 0.00 3.50
532 831 6.443849 TGAATCCACTATCTTGACCTAGGTTT 59.556 38.462 17.53 0.60 0.00 3.27
533 832 6.893020 ATCCACTATCTTGACCTAGGTTTT 57.107 37.500 17.53 2.23 0.00 2.43
534 833 6.697641 TCCACTATCTTGACCTAGGTTTTT 57.302 37.500 17.53 2.59 0.00 1.94
572 871 2.893489 ACAAGGCAAGAAATTGGAGGAC 59.107 45.455 0.00 0.00 0.00 3.85
784 1091 1.616725 CCCCCATGTTTCTAGCAGCAA 60.617 52.381 0.00 0.00 0.00 3.91
897 1208 1.586154 CGGTGCACTGTTCCATTCCC 61.586 60.000 17.96 0.00 0.00 3.97
902 1213 0.995024 CACTGTTCCATTCCCCCTCT 59.005 55.000 0.00 0.00 0.00 3.69
911 1222 1.031112 ATTCCCCCTCTTCCTCCTCT 58.969 55.000 0.00 0.00 0.00 3.69
925 1236 2.418083 CCTCTTTCAATGCCGCCCC 61.418 63.158 0.00 0.00 0.00 5.80
926 1237 2.749839 TCTTTCAATGCCGCCCCG 60.750 61.111 0.00 0.00 0.00 5.73
961 1272 0.108567 TCTAATAACTGCGCCGCACA 60.109 50.000 8.16 0.00 33.79 4.57
973 1284 0.248377 GCCGCACACGTACTAGGTAG 60.248 60.000 0.00 0.00 37.70 3.18
980 1291 4.125703 CACACGTACTAGGTAGGAGTAGG 58.874 52.174 0.00 0.00 39.85 3.18
994 1305 0.390472 AGTAGGCTTCAAGTGCTCGC 60.390 55.000 0.00 0.00 0.00 5.03
997 1308 3.793144 GCTTCAAGTGCTCGCCCG 61.793 66.667 0.00 0.00 0.00 6.13
1044 1358 2.389020 CCTCGTGCTCTTGCTGCTG 61.389 63.158 0.00 0.00 40.48 4.41
1047 1361 2.675056 CGTGCTCTTGCTGCTGGTC 61.675 63.158 0.00 0.00 40.48 4.02
1056 1370 1.973812 GCTGCTGGTCCTTTCCACC 60.974 63.158 0.00 0.00 33.55 4.61
1060 1374 3.587840 TGGTCCTTTCCACCAGGG 58.412 61.111 0.00 0.00 39.11 4.45
1069 1383 2.928396 CCACCAGGGTTCCCGACT 60.928 66.667 1.91 0.00 0.00 4.18
1257 1571 4.699522 GCGAACCTGTCCGCCCTT 62.700 66.667 0.00 0.00 45.06 3.95
1604 1918 2.835431 CCCGCTCGATGGTCTCCT 60.835 66.667 3.45 0.00 0.00 3.69
1723 2037 4.501559 CGTCGTTAGTGTTCTCAAAAGACA 59.498 41.667 0.00 0.00 0.00 3.41
1800 2114 0.677731 CAAAGAAGGCTCATCCCGCA 60.678 55.000 0.00 0.00 34.51 5.69
2010 2324 2.573915 GTGGGGTGAGAAGGAAGAAGAT 59.426 50.000 0.00 0.00 0.00 2.40
2046 2360 3.830192 GCAGCATCAAAGGGGGCG 61.830 66.667 0.00 0.00 0.00 6.13
2047 2361 3.142838 CAGCATCAAAGGGGGCGG 61.143 66.667 0.00 0.00 0.00 6.13
2405 2723 1.272769 GAGCAGTTAGGTTCGGTGAGT 59.727 52.381 0.00 0.00 0.00 3.41
2438 2756 2.033755 GCCAGTGTGAGCTGAGCAG 61.034 63.158 7.39 0.00 38.70 4.24
2640 2964 1.289380 GATATCCGACTGGCCGACC 59.711 63.158 0.00 0.00 34.14 4.79
2838 3171 3.524606 CCGGAGGCGGACGTGTAT 61.525 66.667 0.00 0.00 46.14 2.29
3131 3464 0.386858 GATGCGTGATCATGCCATGC 60.387 55.000 31.77 17.05 44.45 4.06
3210 3543 2.283388 CCACCAGCACATGCCCTT 60.283 61.111 0.00 0.00 43.38 3.95
3278 3622 5.363292 TGTAATAATTGGTAGGCCTCGTACA 59.637 40.000 9.68 0.62 35.27 2.90
3305 3649 2.413112 CAGTAGCAGTGACAATTCCGTG 59.587 50.000 0.00 0.00 0.00 4.94
3334 3678 6.936335 GGGAACATTTGATTTCAGACCATTTT 59.064 34.615 0.00 0.00 0.00 1.82
3354 3698 1.092921 TTTTCCTCGTGTTGCTGCGT 61.093 50.000 0.00 0.00 0.00 5.24
3355 3699 1.092921 TTTCCTCGTGTTGCTGCGTT 61.093 50.000 0.00 0.00 0.00 4.84
3356 3700 1.771073 TTCCTCGTGTTGCTGCGTTG 61.771 55.000 0.00 0.00 0.00 4.10
3357 3701 2.249309 CTCGTGTTGCTGCGTTGG 59.751 61.111 0.00 0.00 0.00 3.77
3358 3702 3.862063 CTCGTGTTGCTGCGTTGGC 62.862 63.158 0.00 0.00 40.52 4.52
3360 3704 2.655044 GTGTTGCTGCGTTGGCAC 60.655 61.111 0.00 0.00 46.21 5.01
3361 3705 3.898509 TGTTGCTGCGTTGGCACC 61.899 61.111 0.00 0.00 46.21 5.01
3362 3706 3.898509 GTTGCTGCGTTGGCACCA 61.899 61.111 0.00 0.00 46.21 4.17
3363 3707 3.143515 TTGCTGCGTTGGCACCAA 61.144 55.556 0.00 0.00 46.21 3.67
3364 3708 3.423162 TTGCTGCGTTGGCACCAAC 62.423 57.895 20.39 20.39 46.21 3.77
3373 3717 1.548081 TTGGCACCAACAGGATGATG 58.452 50.000 0.00 0.00 39.69 3.07
3379 3723 2.112898 CAACAGGATGATGGGCAGC 58.887 57.895 0.00 0.00 39.69 5.25
3380 3724 0.395311 CAACAGGATGATGGGCAGCT 60.395 55.000 0.00 0.00 39.69 4.24
3381 3725 0.106819 AACAGGATGATGGGCAGCTC 60.107 55.000 0.00 0.00 39.69 4.09
3382 3726 1.597302 CAGGATGATGGGCAGCTCG 60.597 63.158 0.00 0.00 39.69 5.03
3383 3727 2.068821 AGGATGATGGGCAGCTCGT 61.069 57.895 0.00 0.00 32.29 4.18
3384 3728 0.760567 AGGATGATGGGCAGCTCGTA 60.761 55.000 0.00 0.00 32.29 3.43
3385 3729 0.322975 GGATGATGGGCAGCTCGTAT 59.677 55.000 0.00 0.00 32.29 3.06
3386 3730 1.271054 GGATGATGGGCAGCTCGTATT 60.271 52.381 0.00 0.00 32.29 1.89
3387 3731 2.498167 GATGATGGGCAGCTCGTATTT 58.502 47.619 0.00 0.00 0.00 1.40
3388 3732 3.557054 GGATGATGGGCAGCTCGTATTTA 60.557 47.826 0.00 0.00 32.29 1.40
3389 3733 3.552132 TGATGGGCAGCTCGTATTTAA 57.448 42.857 0.00 0.00 0.00 1.52
3390 3734 3.879998 TGATGGGCAGCTCGTATTTAAA 58.120 40.909 0.00 0.00 0.00 1.52
3391 3735 4.460263 TGATGGGCAGCTCGTATTTAAAT 58.540 39.130 5.89 5.89 0.00 1.40
3392 3736 4.887071 TGATGGGCAGCTCGTATTTAAATT 59.113 37.500 5.91 0.00 0.00 1.82
3393 3737 4.893424 TGGGCAGCTCGTATTTAAATTC 57.107 40.909 5.91 0.00 0.00 2.17
3394 3738 4.265893 TGGGCAGCTCGTATTTAAATTCA 58.734 39.130 5.91 0.00 0.00 2.57
3395 3739 4.887071 TGGGCAGCTCGTATTTAAATTCAT 59.113 37.500 5.91 0.00 0.00 2.57
3396 3740 5.215160 GGGCAGCTCGTATTTAAATTCATG 58.785 41.667 5.91 0.00 0.00 3.07
3397 3741 4.676924 GGCAGCTCGTATTTAAATTCATGC 59.323 41.667 5.91 8.17 0.00 4.06
3398 3742 4.676924 GCAGCTCGTATTTAAATTCATGCC 59.323 41.667 5.91 0.00 0.00 4.40
3399 3743 4.905866 CAGCTCGTATTTAAATTCATGCCG 59.094 41.667 5.91 0.84 0.00 5.69
3400 3744 3.664025 GCTCGTATTTAAATTCATGCCGC 59.336 43.478 5.91 0.00 0.00 6.53
3401 3745 3.867665 TCGTATTTAAATTCATGCCGCG 58.132 40.909 5.91 0.00 0.00 6.46
3402 3746 2.400408 CGTATTTAAATTCATGCCGCGC 59.600 45.455 5.91 0.00 0.00 6.86
3403 3747 1.851658 ATTTAAATTCATGCCGCGCC 58.148 45.000 0.00 0.00 0.00 6.53
3404 3748 0.179124 TTTAAATTCATGCCGCGCCC 60.179 50.000 0.00 0.00 0.00 6.13
3405 3749 2.010582 TTAAATTCATGCCGCGCCCC 62.011 55.000 0.00 0.00 0.00 5.80
3539 3938 5.416952 AGGAACAAGAAAAGATGCATGGTAG 59.583 40.000 2.46 0.00 0.00 3.18
3574 3973 3.668141 TGTGGAATCCATATGGCTTGT 57.332 42.857 17.58 1.46 35.28 3.16
3635 4040 0.108567 TGCTTTGCGAGTATGGCGTA 60.109 50.000 0.00 0.00 45.68 4.42
3637 4042 1.922570 CTTTGCGAGTATGGCGTAGT 58.077 50.000 0.00 0.00 45.68 2.73
3638 4043 2.797087 GCTTTGCGAGTATGGCGTAGTA 60.797 50.000 0.00 0.00 45.68 1.82
3639 4044 2.768833 TTGCGAGTATGGCGTAGTAG 57.231 50.000 0.00 0.00 45.68 2.57
3640 4045 0.309922 TGCGAGTATGGCGTAGTAGC 59.690 55.000 16.83 16.83 45.68 3.58
3641 4046 0.309922 GCGAGTATGGCGTAGTAGCA 59.690 55.000 18.23 0.00 39.27 3.49
3811 4222 2.672714 CGCTTTTGGCCTTTTAGGTTC 58.327 47.619 3.32 0.00 37.80 3.62
3821 4232 1.804748 CTTTTAGGTTCGTGAGGCCAC 59.195 52.381 5.01 0.00 39.86 5.01
3822 4233 0.759959 TTTAGGTTCGTGAGGCCACA 59.240 50.000 5.01 0.25 43.34 4.17
3823 4234 0.034337 TTAGGTTCGTGAGGCCACAC 59.966 55.000 22.06 22.06 43.34 3.82
3824 4235 1.823169 TAGGTTCGTGAGGCCACACC 61.823 60.000 25.15 12.92 43.34 4.16
3825 4236 2.110213 GTTCGTGAGGCCACACCA 59.890 61.111 25.15 12.18 43.34 4.17
3826 4237 2.110213 TTCGTGAGGCCACACCAC 59.890 61.111 25.15 15.65 43.34 4.16
3829 4240 4.927782 GTGAGGCCACACCACGCA 62.928 66.667 21.48 0.00 42.72 5.24
3830 4241 3.952508 TGAGGCCACACCACGCAT 61.953 61.111 5.01 0.00 43.14 4.73
3831 4242 3.434319 GAGGCCACACCACGCATG 61.434 66.667 5.01 0.00 43.14 4.06
3832 4243 4.269523 AGGCCACACCACGCATGT 62.270 61.111 5.01 0.00 43.14 3.21
3833 4244 2.359354 GGCCACACCACGCATGTA 60.359 61.111 0.00 0.00 38.86 2.29
3834 4245 2.686816 GGCCACACCACGCATGTAC 61.687 63.158 0.00 0.00 38.86 2.90
3835 4246 1.671054 GCCACACCACGCATGTACT 60.671 57.895 0.00 0.00 0.00 2.73
3915 4334 3.650950 TTGTGGGCAGGGAGGCTC 61.651 66.667 5.78 5.78 43.56 4.70
3960 4379 0.964358 ATGAGGTCTTGCTGGCTTGC 60.964 55.000 0.00 0.00 0.00 4.01
3961 4380 1.303155 GAGGTCTTGCTGGCTTGCT 60.303 57.895 4.89 0.00 0.00 3.91
3962 4381 0.036010 GAGGTCTTGCTGGCTTGCTA 60.036 55.000 4.89 0.00 0.00 3.49
3963 4382 0.322008 AGGTCTTGCTGGCTTGCTAC 60.322 55.000 4.89 1.61 0.00 3.58
3964 4383 1.308783 GGTCTTGCTGGCTTGCTACC 61.309 60.000 4.89 6.05 0.00 3.18
3965 4384 1.375908 TCTTGCTGGCTTGCTACCG 60.376 57.895 4.89 0.00 0.00 4.02
3966 4385 2.359850 TTGCTGGCTTGCTACCGG 60.360 61.111 0.00 0.00 36.57 5.28
3994 4413 1.856629 GGTAGGTACCAGCCACAGTA 58.143 55.000 15.94 0.00 45.73 2.74
4014 4433 1.417592 CGCTTCTGTCACGATGTGC 59.582 57.895 0.00 0.00 32.98 4.57
4015 4434 1.790387 GCTTCTGTCACGATGTGCC 59.210 57.895 0.00 0.00 32.98 5.01
4016 4435 1.639298 GCTTCTGTCACGATGTGCCC 61.639 60.000 0.00 0.00 32.98 5.36
4044 4463 4.100808 GTCTAGGAGAGGACCGACTAAGTA 59.899 50.000 0.00 0.00 34.73 2.24
4055 4474 2.230508 CCGACTAAGTAGGAAGCACACA 59.769 50.000 0.00 0.00 29.72 3.72
4059 4478 5.408604 CGACTAAGTAGGAAGCACACAAAAT 59.591 40.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.304180 CCTGGAGACTTGGAGTTCATGT 59.696 50.000 0.00 0.00 36.59 3.21
3 4 2.907892 TCCTGGAGACTTGGAGTTCAT 58.092 47.619 0.00 0.00 31.79 2.57
4 5 2.398754 TCCTGGAGACTTGGAGTTCA 57.601 50.000 0.00 0.00 31.79 3.18
5 6 2.834549 TGATCCTGGAGACTTGGAGTTC 59.165 50.000 1.52 0.00 37.17 3.01
7 8 2.630889 TGATCCTGGAGACTTGGAGT 57.369 50.000 1.52 0.00 37.17 3.85
8 9 5.543405 AGAATATGATCCTGGAGACTTGGAG 59.457 44.000 1.52 0.00 37.17 3.86
9 10 5.471424 AGAATATGATCCTGGAGACTTGGA 58.529 41.667 1.52 0.00 37.87 3.53
10 11 5.822132 AGAATATGATCCTGGAGACTTGG 57.178 43.478 1.52 0.00 0.00 3.61
11 12 6.183361 TGGAAGAATATGATCCTGGAGACTTG 60.183 42.308 1.52 0.00 34.24 3.16
12 13 5.907662 TGGAAGAATATGATCCTGGAGACTT 59.092 40.000 1.52 0.43 34.24 3.01
13 14 5.471424 TGGAAGAATATGATCCTGGAGACT 58.529 41.667 1.52 0.00 34.24 3.24
14 15 5.815233 TGGAAGAATATGATCCTGGAGAC 57.185 43.478 1.52 0.00 34.24 3.36
15 16 6.829985 TTTGGAAGAATATGATCCTGGAGA 57.170 37.500 1.52 0.00 34.24 3.71
16 17 7.886629 TTTTTGGAAGAATATGATCCTGGAG 57.113 36.000 1.52 0.00 34.24 3.86
37 38 1.336755 ACTTTCGGCAGCGTGATTTTT 59.663 42.857 0.00 0.00 0.00 1.94
38 39 0.951558 ACTTTCGGCAGCGTGATTTT 59.048 45.000 0.00 0.00 0.00 1.82
39 40 0.951558 AACTTTCGGCAGCGTGATTT 59.048 45.000 0.00 0.00 0.00 2.17
40 41 0.951558 AAACTTTCGGCAGCGTGATT 59.048 45.000 0.00 0.00 0.00 2.57
41 42 0.517316 GAAACTTTCGGCAGCGTGAT 59.483 50.000 0.00 0.00 0.00 3.06
42 43 0.812014 TGAAACTTTCGGCAGCGTGA 60.812 50.000 0.00 0.00 0.00 4.35
43 44 0.238289 ATGAAACTTTCGGCAGCGTG 59.762 50.000 0.00 0.00 0.00 5.34
44 45 0.951558 AATGAAACTTTCGGCAGCGT 59.048 45.000 0.00 0.00 0.00 5.07
45 46 1.606606 GAATGAAACTTTCGGCAGCG 58.393 50.000 0.00 0.00 0.00 5.18
46 47 1.729149 CGGAATGAAACTTTCGGCAGC 60.729 52.381 0.00 0.00 0.00 5.25
47 48 1.535462 ACGGAATGAAACTTTCGGCAG 59.465 47.619 0.00 0.00 0.00 4.85
48 49 1.600023 ACGGAATGAAACTTTCGGCA 58.400 45.000 0.00 0.00 0.00 5.69
49 50 2.699251 AACGGAATGAAACTTTCGGC 57.301 45.000 0.00 0.00 0.00 5.54
50 51 3.003897 TCCAAACGGAATGAAACTTTCGG 59.996 43.478 0.00 0.00 0.00 4.30
51 52 3.972502 GTCCAAACGGAATGAAACTTTCG 59.027 43.478 0.00 0.00 33.16 3.46
52 53 5.183014 AGTCCAAACGGAATGAAACTTTC 57.817 39.130 0.00 0.00 33.16 2.62
53 54 4.037565 GGAGTCCAAACGGAATGAAACTTT 59.962 41.667 3.60 0.00 33.16 2.66
54 55 3.568430 GGAGTCCAAACGGAATGAAACTT 59.432 43.478 3.60 0.00 33.16 2.66
55 56 3.146847 GGAGTCCAAACGGAATGAAACT 58.853 45.455 3.60 0.00 33.16 2.66
56 57 2.095919 CGGAGTCCAAACGGAATGAAAC 60.096 50.000 10.49 0.00 33.16 2.78
57 58 2.147958 CGGAGTCCAAACGGAATGAAA 58.852 47.619 10.49 0.00 33.16 2.69
58 59 1.071071 ACGGAGTCCAAACGGAATGAA 59.929 47.619 10.49 0.00 29.74 2.57
59 60 0.682852 ACGGAGTCCAAACGGAATGA 59.317 50.000 10.49 0.00 29.74 2.57
60 61 1.519408 AACGGAGTCCAAACGGAATG 58.481 50.000 10.49 0.00 45.00 2.67
61 62 1.877443 CAAACGGAGTCCAAACGGAAT 59.123 47.619 10.49 0.00 45.00 3.01
62 63 1.134461 TCAAACGGAGTCCAAACGGAA 60.134 47.619 10.49 0.00 45.00 4.30
63 64 0.464870 TCAAACGGAGTCCAAACGGA 59.535 50.000 10.49 0.00 45.00 4.69
64 65 1.519408 ATCAAACGGAGTCCAAACGG 58.481 50.000 10.49 0.00 45.00 4.44
65 66 4.201783 GGAATATCAAACGGAGTCCAAACG 60.202 45.833 10.49 0.00 45.00 3.60
66 67 4.941873 AGGAATATCAAACGGAGTCCAAAC 59.058 41.667 10.49 0.00 45.00 2.93
67 68 5.174037 AGGAATATCAAACGGAGTCCAAA 57.826 39.130 10.49 0.00 45.00 3.28
68 69 4.837093 AGGAATATCAAACGGAGTCCAA 57.163 40.909 10.49 0.00 45.00 3.53
69 70 4.837093 AAGGAATATCAAACGGAGTCCA 57.163 40.909 10.49 0.00 45.00 4.02
70 71 5.880887 AGAAAAGGAATATCAAACGGAGTCC 59.119 40.000 0.00 0.00 45.00 3.85
71 72 6.986904 AGAAAAGGAATATCAAACGGAGTC 57.013 37.500 0.00 0.00 45.00 3.36
73 74 6.312918 TCGAAGAAAAGGAATATCAAACGGAG 59.687 38.462 0.00 0.00 0.00 4.63
74 75 6.167685 TCGAAGAAAAGGAATATCAAACGGA 58.832 36.000 0.00 0.00 0.00 4.69
75 76 6.417191 TCGAAGAAAAGGAATATCAAACGG 57.583 37.500 0.00 0.00 0.00 4.44
76 77 8.895932 ATTTCGAAGAAAAGGAATATCAAACG 57.104 30.769 0.00 0.00 45.90 3.60
80 81 9.884636 TCAGTATTTCGAAGAAAAGGAATATCA 57.115 29.630 0.00 0.00 45.90 2.15
84 85 8.846211 TGTTTCAGTATTTCGAAGAAAAGGAAT 58.154 29.630 10.11 0.00 45.90 3.01
85 86 8.215926 TGTTTCAGTATTTCGAAGAAAAGGAA 57.784 30.769 10.11 4.30 45.90 3.36
86 87 7.041372 CCTGTTTCAGTATTTCGAAGAAAAGGA 60.041 37.037 19.44 7.37 45.90 3.36
87 88 7.078228 CCTGTTTCAGTATTTCGAAGAAAAGG 58.922 38.462 10.11 13.25 45.90 3.11
88 89 6.578919 GCCTGTTTCAGTATTTCGAAGAAAAG 59.421 38.462 10.11 9.73 45.90 2.27
89 90 6.038825 TGCCTGTTTCAGTATTTCGAAGAAAA 59.961 34.615 10.11 0.00 45.90 2.29
90 91 5.529430 TGCCTGTTTCAGTATTTCGAAGAAA 59.471 36.000 0.00 1.64 45.90 2.52
91 92 5.060506 TGCCTGTTTCAGTATTTCGAAGAA 58.939 37.500 0.00 0.00 45.90 2.52
92 93 4.637276 TGCCTGTTTCAGTATTTCGAAGA 58.363 39.130 0.00 0.00 0.00 2.87
93 94 5.356882 TTGCCTGTTTCAGTATTTCGAAG 57.643 39.130 0.00 0.00 0.00 3.79
94 95 5.957842 ATTGCCTGTTTCAGTATTTCGAA 57.042 34.783 0.00 0.00 0.00 3.71
95 96 7.441890 TTTATTGCCTGTTTCAGTATTTCGA 57.558 32.000 0.00 0.00 0.00 3.71
96 97 7.593273 TGTTTTATTGCCTGTTTCAGTATTTCG 59.407 33.333 0.00 0.00 0.00 3.46
97 98 8.810652 TGTTTTATTGCCTGTTTCAGTATTTC 57.189 30.769 0.00 0.00 0.00 2.17
98 99 7.384932 GCTGTTTTATTGCCTGTTTCAGTATTT 59.615 33.333 0.00 0.00 0.00 1.40
99 100 6.868339 GCTGTTTTATTGCCTGTTTCAGTATT 59.132 34.615 0.00 0.00 0.00 1.89
100 101 6.015519 TGCTGTTTTATTGCCTGTTTCAGTAT 60.016 34.615 0.00 0.00 0.00 2.12
101 102 5.300539 TGCTGTTTTATTGCCTGTTTCAGTA 59.699 36.000 0.00 0.00 0.00 2.74
102 103 4.099266 TGCTGTTTTATTGCCTGTTTCAGT 59.901 37.500 0.00 0.00 0.00 3.41
103 104 4.619973 TGCTGTTTTATTGCCTGTTTCAG 58.380 39.130 0.00 0.00 0.00 3.02
104 105 4.662468 TGCTGTTTTATTGCCTGTTTCA 57.338 36.364 0.00 0.00 0.00 2.69
105 106 7.201548 CCATATTGCTGTTTTATTGCCTGTTTC 60.202 37.037 0.00 0.00 0.00 2.78
106 107 6.594937 CCATATTGCTGTTTTATTGCCTGTTT 59.405 34.615 0.00 0.00 0.00 2.83
107 108 6.070881 TCCATATTGCTGTTTTATTGCCTGTT 60.071 34.615 0.00 0.00 0.00 3.16
108 109 5.421693 TCCATATTGCTGTTTTATTGCCTGT 59.578 36.000 0.00 0.00 0.00 4.00
109 110 5.750067 GTCCATATTGCTGTTTTATTGCCTG 59.250 40.000 0.00 0.00 0.00 4.85
110 111 5.658190 AGTCCATATTGCTGTTTTATTGCCT 59.342 36.000 0.00 0.00 0.00 4.75
111 112 5.750067 CAGTCCATATTGCTGTTTTATTGCC 59.250 40.000 0.00 0.00 0.00 4.52
112 113 5.750067 CCAGTCCATATTGCTGTTTTATTGC 59.250 40.000 0.00 0.00 0.00 3.56
113 114 6.275335 CCCAGTCCATATTGCTGTTTTATTG 58.725 40.000 0.00 0.00 0.00 1.90
114 115 5.163416 GCCCAGTCCATATTGCTGTTTTATT 60.163 40.000 0.00 0.00 0.00 1.40
115 116 4.342092 GCCCAGTCCATATTGCTGTTTTAT 59.658 41.667 0.00 0.00 0.00 1.40
116 117 3.699038 GCCCAGTCCATATTGCTGTTTTA 59.301 43.478 0.00 0.00 0.00 1.52
117 118 2.497273 GCCCAGTCCATATTGCTGTTTT 59.503 45.455 0.00 0.00 0.00 2.43
118 119 2.102578 GCCCAGTCCATATTGCTGTTT 58.897 47.619 0.00 0.00 0.00 2.83
119 120 1.686115 GGCCCAGTCCATATTGCTGTT 60.686 52.381 0.00 0.00 0.00 3.16
120 121 0.106519 GGCCCAGTCCATATTGCTGT 60.107 55.000 0.00 0.00 0.00 4.40
121 122 0.184451 AGGCCCAGTCCATATTGCTG 59.816 55.000 0.00 0.00 0.00 4.41
122 123 0.475906 GAGGCCCAGTCCATATTGCT 59.524 55.000 0.00 0.00 0.00 3.91
123 124 0.538287 GGAGGCCCAGTCCATATTGC 60.538 60.000 0.00 0.00 33.84 3.56
124 125 0.846015 TGGAGGCCCAGTCCATATTG 59.154 55.000 8.12 0.00 39.28 1.90
125 126 3.357874 TGGAGGCCCAGTCCATATT 57.642 52.632 8.12 0.00 39.28 1.28
134 135 2.280308 ACCTATTAACTGGAGGCCCA 57.720 50.000 0.00 0.00 40.95 5.36
135 136 3.715315 ACTAACCTATTAACTGGAGGCCC 59.285 47.826 0.00 0.00 33.28 5.80
136 137 4.202336 GGACTAACCTATTAACTGGAGGCC 60.202 50.000 0.00 0.00 33.28 5.19
137 138 4.202336 GGGACTAACCTATTAACTGGAGGC 60.202 50.000 2.93 0.00 38.98 4.70
138 139 4.966805 TGGGACTAACCTATTAACTGGAGG 59.033 45.833 2.93 0.00 38.98 4.30
139 140 6.555463 TTGGGACTAACCTATTAACTGGAG 57.445 41.667 2.93 0.00 38.98 3.86
140 141 6.956102 TTTGGGACTAACCTATTAACTGGA 57.044 37.500 2.93 0.00 38.98 3.86
141 142 7.173032 ACTTTTGGGACTAACCTATTAACTGG 58.827 38.462 0.00 0.00 38.98 4.00
142 143 9.729281 TTACTTTTGGGACTAACCTATTAACTG 57.271 33.333 0.00 0.00 38.98 3.16
182 183 9.581099 CTGTTTTGAATTATTACGGGCTTTATT 57.419 29.630 0.00 0.00 0.00 1.40
183 184 8.962679 TCTGTTTTGAATTATTACGGGCTTTAT 58.037 29.630 0.00 0.00 0.00 1.40
184 185 8.338072 TCTGTTTTGAATTATTACGGGCTTTA 57.662 30.769 0.00 0.00 0.00 1.85
185 186 7.222000 TCTGTTTTGAATTATTACGGGCTTT 57.778 32.000 0.00 0.00 0.00 3.51
186 187 6.827586 TCTGTTTTGAATTATTACGGGCTT 57.172 33.333 0.00 0.00 0.00 4.35
187 188 8.514330 TTATCTGTTTTGAATTATTACGGGCT 57.486 30.769 0.00 0.00 0.00 5.19
225 226 9.587772 GGACATATCTATAACGTATGAAGCATT 57.412 33.333 0.00 0.00 31.82 3.56
226 227 8.198109 GGGACATATCTATAACGTATGAAGCAT 58.802 37.037 0.00 0.00 31.82 3.79
227 228 7.363530 GGGGACATATCTATAACGTATGAAGCA 60.364 40.741 0.00 0.00 31.82 3.91
228 229 6.979238 GGGGACATATCTATAACGTATGAAGC 59.021 42.308 0.00 0.00 31.82 3.86
229 230 8.063200 TGGGGACATATCTATAACGTATGAAG 57.937 38.462 0.00 0.00 33.40 3.02
248 249 0.678048 GACCTTGACAGCATGGGGAC 60.678 60.000 0.00 0.00 43.62 4.46
249 250 1.685224 GACCTTGACAGCATGGGGA 59.315 57.895 0.00 0.00 43.62 4.81
250 251 1.746615 CGACCTTGACAGCATGGGG 60.747 63.158 0.00 0.00 43.62 4.96
251 252 1.746615 CCGACCTTGACAGCATGGG 60.747 63.158 0.00 0.00 43.62 4.00
252 253 1.746615 CCCGACCTTGACAGCATGG 60.747 63.158 0.00 0.00 43.62 3.66
253 254 0.321564 TTCCCGACCTTGACAGCATG 60.322 55.000 0.00 0.00 46.00 4.06
254 255 0.036010 CTTCCCGACCTTGACAGCAT 60.036 55.000 0.00 0.00 0.00 3.79
255 256 1.371183 CTTCCCGACCTTGACAGCA 59.629 57.895 0.00 0.00 0.00 4.41
256 257 1.376037 CCTTCCCGACCTTGACAGC 60.376 63.158 0.00 0.00 0.00 4.40
265 266 1.271163 TGATTGGTTCACCTTCCCGAC 60.271 52.381 0.00 0.00 36.82 4.79
282 283 0.988678 GGGCTGACTAAGGGGGTGAT 60.989 60.000 0.00 0.00 0.00 3.06
314 315 3.866651 CACGATCTTCCCATGTTCTTCT 58.133 45.455 0.00 0.00 0.00 2.85
334 335 2.135139 CAAGAGTCTACTTTGTGCGCA 58.865 47.619 5.66 5.66 0.00 6.09
343 344 1.893786 CAGCCGCCAAGAGTCTACT 59.106 57.895 0.00 0.00 0.00 2.57
402 701 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
403 702 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
404 703 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
414 713 2.041819 AGGTCGGGGGTCATCCTC 60.042 66.667 0.00 0.00 35.33 3.71
415 714 2.041819 GAGGTCGGGGGTCATCCT 60.042 66.667 0.00 0.00 35.33 3.24
416 715 2.041819 AGAGGTCGGGGGTCATCC 60.042 66.667 0.00 0.00 0.00 3.51
417 716 3.095347 GCAGAGGTCGGGGGTCATC 62.095 68.421 0.00 0.00 0.00 2.92
418 717 3.083997 GCAGAGGTCGGGGGTCAT 61.084 66.667 0.00 0.00 0.00 3.06
419 718 3.924013 ATGCAGAGGTCGGGGGTCA 62.924 63.158 0.00 0.00 0.00 4.02
420 719 3.083997 ATGCAGAGGTCGGGGGTC 61.084 66.667 0.00 0.00 0.00 4.46
421 720 3.083997 GATGCAGAGGTCGGGGGT 61.084 66.667 0.00 0.00 0.00 4.95
422 721 2.765807 AGATGCAGAGGTCGGGGG 60.766 66.667 0.00 0.00 0.00 5.40
423 722 2.503061 CAGATGCAGAGGTCGGGG 59.497 66.667 0.00 0.00 0.00 5.73
424 723 1.043116 TACCAGATGCAGAGGTCGGG 61.043 60.000 10.40 6.71 36.87 5.14
425 724 0.387202 CTACCAGATGCAGAGGTCGG 59.613 60.000 10.40 3.27 36.87 4.79
426 725 1.393603 TCTACCAGATGCAGAGGTCG 58.606 55.000 10.40 5.65 36.87 4.79
427 726 3.383620 CATCTACCAGATGCAGAGGTC 57.616 52.381 10.40 0.00 44.69 3.85
436 735 3.005897 GTGACCGTATGCATCTACCAGAT 59.994 47.826 0.19 0.00 34.74 2.90
437 736 2.361119 GTGACCGTATGCATCTACCAGA 59.639 50.000 0.19 0.00 0.00 3.86
438 737 2.362397 AGTGACCGTATGCATCTACCAG 59.638 50.000 0.19 0.00 0.00 4.00
439 738 2.384828 AGTGACCGTATGCATCTACCA 58.615 47.619 0.19 0.00 0.00 3.25
440 739 3.454371 AAGTGACCGTATGCATCTACC 57.546 47.619 0.19 0.00 0.00 3.18
441 740 6.700081 TCAATAAAGTGACCGTATGCATCTAC 59.300 38.462 0.19 0.00 0.00 2.59
442 741 6.811954 TCAATAAAGTGACCGTATGCATCTA 58.188 36.000 0.19 0.00 0.00 1.98
443 742 5.670485 TCAATAAAGTGACCGTATGCATCT 58.330 37.500 0.19 0.00 0.00 2.90
444 743 5.984233 TCAATAAAGTGACCGTATGCATC 57.016 39.130 0.19 0.00 0.00 3.91
445 744 6.942532 AATCAATAAAGTGACCGTATGCAT 57.057 33.333 3.79 3.79 0.00 3.96
446 745 8.984764 GTATAATCAATAAAGTGACCGTATGCA 58.015 33.333 0.00 0.00 0.00 3.96
447 746 9.204570 AGTATAATCAATAAAGTGACCGTATGC 57.795 33.333 0.00 0.00 0.00 3.14
449 748 9.622004 CGAGTATAATCAATAAAGTGACCGTAT 57.378 33.333 0.58 0.00 0.00 3.06
450 749 8.839343 TCGAGTATAATCAATAAAGTGACCGTA 58.161 33.333 0.58 0.00 0.00 4.02
451 750 7.709947 TCGAGTATAATCAATAAAGTGACCGT 58.290 34.615 0.58 0.00 0.00 4.83
452 751 7.326305 CCTCGAGTATAATCAATAAAGTGACCG 59.674 40.741 12.31 0.00 0.00 4.79
453 752 8.358148 TCCTCGAGTATAATCAATAAAGTGACC 58.642 37.037 12.31 0.00 0.00 4.02
454 753 9.182933 GTCCTCGAGTATAATCAATAAAGTGAC 57.817 37.037 12.31 1.46 0.00 3.67
455 754 8.358148 GGTCCTCGAGTATAATCAATAAAGTGA 58.642 37.037 12.31 0.00 0.00 3.41
456 755 8.361139 AGGTCCTCGAGTATAATCAATAAAGTG 58.639 37.037 12.31 0.00 0.00 3.16
457 756 8.480133 AGGTCCTCGAGTATAATCAATAAAGT 57.520 34.615 12.31 0.00 0.00 2.66
460 759 9.358406 TGTAAGGTCCTCGAGTATAATCAATAA 57.642 33.333 12.31 0.00 0.00 1.40
461 760 8.929260 TGTAAGGTCCTCGAGTATAATCAATA 57.071 34.615 12.31 0.00 0.00 1.90
462 761 7.834881 TGTAAGGTCCTCGAGTATAATCAAT 57.165 36.000 12.31 0.00 0.00 2.57
463 762 7.649533 TTGTAAGGTCCTCGAGTATAATCAA 57.350 36.000 12.31 5.93 0.00 2.57
464 763 7.341256 ACTTTGTAAGGTCCTCGAGTATAATCA 59.659 37.037 12.31 0.00 0.00 2.57
465 764 7.714703 ACTTTGTAAGGTCCTCGAGTATAATC 58.285 38.462 12.31 0.00 0.00 1.75
466 765 7.657023 ACTTTGTAAGGTCCTCGAGTATAAT 57.343 36.000 12.31 0.00 0.00 1.28
467 766 8.757982 ATACTTTGTAAGGTCCTCGAGTATAA 57.242 34.615 12.31 0.00 29.90 0.98
468 767 8.757982 AATACTTTGTAAGGTCCTCGAGTATA 57.242 34.615 12.31 0.00 31.08 1.47
469 768 7.657023 AATACTTTGTAAGGTCCTCGAGTAT 57.343 36.000 12.31 0.00 32.22 2.12
470 769 7.611467 TGTAATACTTTGTAAGGTCCTCGAGTA 59.389 37.037 12.31 0.00 0.00 2.59
471 770 5.997384 AATACTTTGTAAGGTCCTCGAGT 57.003 39.130 12.31 0.00 0.00 4.18
472 771 6.860080 TGTAATACTTTGTAAGGTCCTCGAG 58.140 40.000 5.13 5.13 0.00 4.04
473 772 6.839124 TGTAATACTTTGTAAGGTCCTCGA 57.161 37.500 0.00 0.00 0.00 4.04
474 773 9.590451 TTATTGTAATACTTTGTAAGGTCCTCG 57.410 33.333 0.00 0.00 0.00 4.63
480 779 9.730420 GGCACATTATTGTAATACTTTGTAAGG 57.270 33.333 0.00 0.00 33.76 2.69
483 782 9.674068 TCAGGCACATTATTGTAATACTTTGTA 57.326 29.630 0.00 0.00 33.76 2.41
484 783 8.574251 TCAGGCACATTATTGTAATACTTTGT 57.426 30.769 0.00 0.00 33.76 2.83
487 786 8.850156 GGATTCAGGCACATTATTGTAATACTT 58.150 33.333 0.00 0.00 33.76 2.24
488 787 7.998383 TGGATTCAGGCACATTATTGTAATACT 59.002 33.333 0.00 0.00 33.76 2.12
489 788 8.076178 GTGGATTCAGGCACATTATTGTAATAC 58.924 37.037 0.00 0.00 33.76 1.89
490 789 7.998383 AGTGGATTCAGGCACATTATTGTAATA 59.002 33.333 0.00 0.00 33.76 0.98
491 790 6.835488 AGTGGATTCAGGCACATTATTGTAAT 59.165 34.615 0.00 0.00 33.76 1.89
492 791 6.186957 AGTGGATTCAGGCACATTATTGTAA 58.813 36.000 0.00 0.00 33.76 2.41
493 792 5.754782 AGTGGATTCAGGCACATTATTGTA 58.245 37.500 0.00 0.00 33.76 2.41
494 793 4.603131 AGTGGATTCAGGCACATTATTGT 58.397 39.130 0.00 0.00 36.15 2.71
495 794 6.713903 AGATAGTGGATTCAGGCACATTATTG 59.286 38.462 0.00 0.00 0.00 1.90
496 795 6.845908 AGATAGTGGATTCAGGCACATTATT 58.154 36.000 0.00 0.00 0.00 1.40
497 796 6.445451 AGATAGTGGATTCAGGCACATTAT 57.555 37.500 0.00 0.00 0.00 1.28
498 797 5.894298 AGATAGTGGATTCAGGCACATTA 57.106 39.130 0.00 0.00 0.00 1.90
499 798 4.785346 AGATAGTGGATTCAGGCACATT 57.215 40.909 0.00 0.00 0.00 2.71
500 799 4.164796 TCAAGATAGTGGATTCAGGCACAT 59.835 41.667 0.00 0.00 0.00 3.21
501 800 3.519107 TCAAGATAGTGGATTCAGGCACA 59.481 43.478 0.00 0.00 0.00 4.57
502 801 3.873952 GTCAAGATAGTGGATTCAGGCAC 59.126 47.826 0.00 0.00 0.00 5.01
503 802 3.118261 GGTCAAGATAGTGGATTCAGGCA 60.118 47.826 0.00 0.00 0.00 4.75
504 803 3.135530 AGGTCAAGATAGTGGATTCAGGC 59.864 47.826 0.00 0.00 0.00 4.85
505 804 5.011533 CCTAGGTCAAGATAGTGGATTCAGG 59.988 48.000 0.00 0.00 0.00 3.86
506 805 5.600484 ACCTAGGTCAAGATAGTGGATTCAG 59.400 44.000 9.21 0.00 0.00 3.02
507 806 5.529289 ACCTAGGTCAAGATAGTGGATTCA 58.471 41.667 9.21 0.00 0.00 2.57
508 807 6.487299 AACCTAGGTCAAGATAGTGGATTC 57.513 41.667 16.64 0.00 0.00 2.52
509 808 6.893020 AAACCTAGGTCAAGATAGTGGATT 57.107 37.500 16.64 0.00 0.00 3.01
510 809 6.893020 AAAACCTAGGTCAAGATAGTGGAT 57.107 37.500 16.64 0.00 0.00 3.41
511 810 6.697641 AAAAACCTAGGTCAAGATAGTGGA 57.302 37.500 16.64 0.00 0.00 4.02
531 830 9.036671 GCCTTGTTTTTAGTGTATAAGCAAAAA 57.963 29.630 0.00 0.00 0.00 1.94
532 831 8.198109 TGCCTTGTTTTTAGTGTATAAGCAAAA 58.802 29.630 0.00 0.00 0.00 2.44
533 832 7.717568 TGCCTTGTTTTTAGTGTATAAGCAAA 58.282 30.769 0.00 0.00 0.00 3.68
534 833 7.278461 TGCCTTGTTTTTAGTGTATAAGCAA 57.722 32.000 0.00 0.00 0.00 3.91
535 834 6.885952 TGCCTTGTTTTTAGTGTATAAGCA 57.114 33.333 0.00 0.00 0.00 3.91
536 835 7.590279 TCTTGCCTTGTTTTTAGTGTATAAGC 58.410 34.615 0.00 0.00 0.00 3.09
537 836 9.959749 TTTCTTGCCTTGTTTTTAGTGTATAAG 57.040 29.630 0.00 0.00 0.00 1.73
540 839 9.260002 CAATTTCTTGCCTTGTTTTTAGTGTAT 57.740 29.630 0.00 0.00 0.00 2.29
541 840 7.708752 CCAATTTCTTGCCTTGTTTTTAGTGTA 59.291 33.333 0.00 0.00 0.00 2.90
542 841 6.538381 CCAATTTCTTGCCTTGTTTTTAGTGT 59.462 34.615 0.00 0.00 0.00 3.55
543 842 6.760770 TCCAATTTCTTGCCTTGTTTTTAGTG 59.239 34.615 0.00 0.00 0.00 2.74
593 892 6.051717 CAGAAATTGAGGGAGTGATATCGTT 58.948 40.000 0.00 0.00 0.00 3.85
643 944 3.733337 TCTTGTTCTGCCTTCTTGACTC 58.267 45.455 0.00 0.00 0.00 3.36
784 1091 3.170672 TGGGACAGTGGCAGTGCT 61.171 61.111 21.89 9.45 0.00 4.40
796 1103 4.127907 GGTTTAATAGCTGCTACTGGGAC 58.872 47.826 12.26 7.38 0.00 4.46
861 1172 3.715097 GTGCAGGGGAGCTGCTCT 61.715 66.667 27.09 0.00 46.95 4.09
888 1199 1.596496 GAGGAAGAGGGGGAATGGAA 58.404 55.000 0.00 0.00 0.00 3.53
897 1208 3.883669 CATTGAAAGAGGAGGAAGAGGG 58.116 50.000 0.00 0.00 0.00 4.30
902 1213 1.950484 GCGGCATTGAAAGAGGAGGAA 60.950 52.381 0.00 0.00 0.00 3.36
961 1272 3.044894 AGCCTACTCCTACCTAGTACGT 58.955 50.000 0.00 0.00 0.00 3.57
973 1284 1.737363 CGAGCACTTGAAGCCTACTCC 60.737 57.143 0.00 0.00 0.00 3.85
980 1291 3.793144 CGGGCGAGCACTTGAAGC 61.793 66.667 0.00 0.00 0.00 3.86
997 1308 2.439156 GGAGTGGAGTGGCATGGC 60.439 66.667 13.29 13.29 0.00 4.40
1044 1358 0.251209 GAACCCTGGTGGAAAGGACC 60.251 60.000 0.00 0.00 36.91 4.46
1047 1361 4.843624 GGAACCCTGGTGGAAAGG 57.156 61.111 0.00 0.00 38.00 3.11
1060 1374 0.812549 GAGGAGACAGAGTCGGGAAC 59.187 60.000 0.00 0.00 37.67 3.62
1069 1383 0.244994 GCGCAAGAAGAGGAGACAGA 59.755 55.000 0.30 0.00 43.02 3.41
1296 1610 3.546543 CAGAAGCCGCCGGGGATA 61.547 66.667 21.95 0.00 38.47 2.59
1338 1652 3.584868 CTGGTTCCCCGACACGTCC 62.585 68.421 0.00 0.00 0.00 4.79
1599 1913 3.067742 ACGAGACGTTCAAGAAAAGGAGA 59.932 43.478 0.00 0.00 36.35 3.71
1604 1918 4.863689 TGTTGTACGAGACGTTCAAGAAAA 59.136 37.500 14.27 2.15 44.69 2.29
1701 2015 5.276726 GGTGTCTTTTGAGAACACTAACGAC 60.277 44.000 5.02 0.00 28.70 4.34
1764 2078 0.107410 TTGCACTTGTTCCTCGTGGT 60.107 50.000 2.99 0.00 34.23 4.16
1800 2114 1.961277 CGTGCTCTTTGCCGTCCTT 60.961 57.895 0.00 0.00 42.00 3.36
1828 2142 3.496155 CCAGATGCTTCTTTCTTTTCGC 58.504 45.455 0.00 0.00 0.00 4.70
1887 2201 0.969917 AGCAGAGCAGGACGATCACT 60.970 55.000 0.00 0.00 30.15 3.41
2010 2324 4.947147 GCCGCCACAACCACCTCA 62.947 66.667 0.00 0.00 0.00 3.86
2405 2723 2.171237 CACTGGCAATCCATCTGACCTA 59.829 50.000 0.00 0.00 42.51 3.08
2438 2756 7.689400 CGAATTTCAAAAGCCAAGATTTTATGC 59.311 33.333 0.00 0.00 29.83 3.14
2445 2763 6.591448 GGAATTCGAATTTCAAAAGCCAAGAT 59.409 34.615 23.49 0.00 0.00 2.40
2514 2832 1.120530 GGAGGTCGCCTTTCTCCATA 58.879 55.000 0.00 0.00 44.72 2.74
2739 3063 2.320587 GCTGAGGAGCACGTTGGTG 61.321 63.158 0.00 0.00 45.46 4.17
3051 3384 2.676608 CCCACCACCTGCTGCATA 59.323 61.111 1.31 0.00 0.00 3.14
3114 3447 2.483197 GGCATGGCATGATCACGCA 61.483 57.895 30.69 2.20 0.00 5.24
3210 3543 0.389817 GTGTATGGTGCACTCGAGCA 60.390 55.000 17.98 3.27 43.35 4.26
3263 3607 1.206132 CACATTGTACGAGGCCTACCA 59.794 52.381 4.42 0.00 39.06 3.25
3278 3622 2.549064 TGTCACTGCTACTGCACATT 57.451 45.000 0.00 0.00 45.31 2.71
3305 3649 3.511146 TCTGAAATCAAATGTTCCCTGCC 59.489 43.478 0.00 0.00 0.00 4.85
3334 3678 0.028770 CGCAGCAACACGAGGAAAAA 59.971 50.000 0.00 0.00 0.00 1.94
3336 3680 1.092921 AACGCAGCAACACGAGGAAA 61.093 50.000 0.00 0.00 0.00 3.13
3337 3681 1.522806 AACGCAGCAACACGAGGAA 60.523 52.632 0.00 0.00 0.00 3.36
3338 3682 2.108157 AACGCAGCAACACGAGGA 59.892 55.556 0.00 0.00 0.00 3.71
3339 3683 2.249309 CAACGCAGCAACACGAGG 59.751 61.111 0.00 0.00 0.00 4.63
3354 3698 1.548081 CATCATCCTGTTGGTGCCAA 58.452 50.000 0.00 0.00 34.23 4.52
3355 3699 0.323633 CCATCATCCTGTTGGTGCCA 60.324 55.000 0.00 0.00 33.61 4.92
3356 3700 1.039233 CCCATCATCCTGTTGGTGCC 61.039 60.000 4.11 0.00 35.88 5.01
3357 3701 1.669999 GCCCATCATCCTGTTGGTGC 61.670 60.000 4.11 3.80 35.88 5.01
3358 3702 0.323633 TGCCCATCATCCTGTTGGTG 60.324 55.000 4.11 0.00 35.88 4.17
3359 3703 0.033796 CTGCCCATCATCCTGTTGGT 60.034 55.000 4.11 0.00 35.88 3.67
3360 3704 1.389609 GCTGCCCATCATCCTGTTGG 61.390 60.000 0.00 0.00 37.06 3.77
3361 3705 0.395311 AGCTGCCCATCATCCTGTTG 60.395 55.000 0.00 0.00 0.00 3.33
3362 3706 0.106819 GAGCTGCCCATCATCCTGTT 60.107 55.000 0.00 0.00 0.00 3.16
3363 3707 1.530771 GAGCTGCCCATCATCCTGT 59.469 57.895 0.00 0.00 0.00 4.00
3364 3708 1.597302 CGAGCTGCCCATCATCCTG 60.597 63.158 0.00 0.00 0.00 3.86
3365 3709 0.760567 TACGAGCTGCCCATCATCCT 60.761 55.000 0.00 0.00 0.00 3.24
3366 3710 0.322975 ATACGAGCTGCCCATCATCC 59.677 55.000 0.00 0.00 0.00 3.51
3367 3711 2.175878 AATACGAGCTGCCCATCATC 57.824 50.000 0.00 0.00 0.00 2.92
3368 3712 2.645838 AAATACGAGCTGCCCATCAT 57.354 45.000 0.00 0.00 0.00 2.45
3369 3713 3.552132 TTAAATACGAGCTGCCCATCA 57.448 42.857 0.00 0.00 0.00 3.07
3370 3714 5.008613 TGAATTTAAATACGAGCTGCCCATC 59.991 40.000 0.01 0.00 0.00 3.51
3371 3715 4.887071 TGAATTTAAATACGAGCTGCCCAT 59.113 37.500 0.01 0.00 0.00 4.00
3372 3716 4.265893 TGAATTTAAATACGAGCTGCCCA 58.734 39.130 0.01 0.00 0.00 5.36
3373 3717 4.893424 TGAATTTAAATACGAGCTGCCC 57.107 40.909 0.01 0.00 0.00 5.36
3374 3718 4.676924 GCATGAATTTAAATACGAGCTGCC 59.323 41.667 0.01 0.00 0.00 4.85
3375 3719 4.676924 GGCATGAATTTAAATACGAGCTGC 59.323 41.667 0.01 5.56 0.00 5.25
3376 3720 4.905866 CGGCATGAATTTAAATACGAGCTG 59.094 41.667 0.01 5.73 0.00 4.24
3377 3721 4.554723 GCGGCATGAATTTAAATACGAGCT 60.555 41.667 0.01 0.00 0.00 4.09
3378 3722 3.664025 GCGGCATGAATTTAAATACGAGC 59.336 43.478 0.01 4.37 0.00 5.03
3379 3723 3.900116 CGCGGCATGAATTTAAATACGAG 59.100 43.478 0.00 0.00 0.00 4.18
3380 3724 3.846744 GCGCGGCATGAATTTAAATACGA 60.847 43.478 8.83 0.00 0.00 3.43
3381 3725 2.400408 GCGCGGCATGAATTTAAATACG 59.600 45.455 8.83 1.86 0.00 3.06
3382 3726 2.724174 GGCGCGGCATGAATTTAAATAC 59.276 45.455 29.32 0.00 0.00 1.89
3383 3727 2.287909 GGGCGCGGCATGAATTTAAATA 60.288 45.455 34.30 0.00 0.00 1.40
3384 3728 1.537990 GGGCGCGGCATGAATTTAAAT 60.538 47.619 34.30 0.00 0.00 1.40
3385 3729 0.179124 GGGCGCGGCATGAATTTAAA 60.179 50.000 34.30 0.00 0.00 1.52
3386 3730 1.435515 GGGCGCGGCATGAATTTAA 59.564 52.632 34.30 0.00 0.00 1.52
3387 3731 2.485795 GGGGCGCGGCATGAATTTA 61.486 57.895 34.30 0.00 0.00 1.40
3388 3732 3.837112 GGGGCGCGGCATGAATTT 61.837 61.111 34.30 0.00 0.00 1.82
3402 3746 2.806503 TTTATGGTGCACGGACGGGG 62.807 60.000 11.45 0.00 0.00 5.73
3403 3747 0.746563 ATTTATGGTGCACGGACGGG 60.747 55.000 11.45 0.00 0.00 5.28
3404 3748 0.376852 CATTTATGGTGCACGGACGG 59.623 55.000 11.45 0.00 0.00 4.79
3405 3749 1.083489 ACATTTATGGTGCACGGACG 58.917 50.000 11.45 0.00 0.00 4.79
3406 3750 1.810151 ACACATTTATGGTGCACGGAC 59.190 47.619 11.45 0.00 39.87 4.79
3407 3751 2.192664 ACACATTTATGGTGCACGGA 57.807 45.000 11.45 0.00 39.87 4.69
3412 3756 1.469079 GCGGGAACACATTTATGGTGC 60.469 52.381 0.00 0.00 39.87 5.01
3463 3807 1.606994 CCCGTTGGTTCTTGTCGATGA 60.607 52.381 0.00 0.00 0.00 2.92
3489 3882 5.458041 AATCATGTTGGAACTTGGACAAG 57.542 39.130 10.34 10.34 43.79 3.16
3491 3884 5.009631 CCTAATCATGTTGGAACTTGGACA 58.990 41.667 5.78 0.00 35.48 4.02
3492 3885 5.253330 TCCTAATCATGTTGGAACTTGGAC 58.747 41.667 5.78 0.00 35.48 4.02
3574 3973 4.562757 CCACCTCGATCTCACCTTTTGTAA 60.563 45.833 0.00 0.00 0.00 2.41
3694 4103 2.396590 TAACAACCTCGCATTCCTCC 57.603 50.000 0.00 0.00 0.00 4.30
3821 4232 2.259618 GTAGTGAGTACATGCGTGGTG 58.740 52.381 11.36 0.00 0.00 4.17
3822 4233 1.135489 CGTAGTGAGTACATGCGTGGT 60.135 52.381 11.36 0.00 0.00 4.16
3823 4234 1.545759 CGTAGTGAGTACATGCGTGG 58.454 55.000 11.36 0.00 0.00 4.94
3824 4235 0.914551 GCGTAGTGAGTACATGCGTG 59.085 55.000 3.82 3.82 0.00 5.34
3825 4236 0.522705 CGCGTAGTGAGTACATGCGT 60.523 55.000 10.30 0.00 43.07 5.24
3826 4237 0.247934 TCGCGTAGTGAGTACATGCG 60.248 55.000 5.77 11.73 44.70 4.73
3827 4238 3.616935 TCGCGTAGTGAGTACATGC 57.383 52.632 5.77 0.00 44.70 4.06
3918 4337 3.858868 GACCTGAACTGTCGCCGCA 62.859 63.158 0.00 0.00 0.00 5.69
3919 4338 3.112709 GACCTGAACTGTCGCCGC 61.113 66.667 0.00 0.00 0.00 6.53
3920 4339 1.734477 CTGACCTGAACTGTCGCCG 60.734 63.158 0.00 0.00 35.46 6.46
3921 4340 2.029844 GCTGACCTGAACTGTCGCC 61.030 63.158 0.00 0.00 35.46 5.54
3965 4384 0.250234 GGTACCTACCGGTGGAAACC 59.750 60.000 21.08 20.69 45.18 3.27
3966 4385 3.840831 GGTACCTACCGGTGGAAAC 57.159 57.895 21.08 15.85 45.18 2.78
3994 4413 1.010935 CACATCGTGACAGAAGCGCT 61.011 55.000 2.64 2.64 35.23 5.92
4014 4433 1.455959 CCTCTCCTAGACCCACGGG 60.456 68.421 0.00 0.00 42.03 5.28
4015 4434 0.752376 GTCCTCTCCTAGACCCACGG 60.752 65.000 0.00 0.00 0.00 4.94
4016 4435 0.752376 GGTCCTCTCCTAGACCCACG 60.752 65.000 0.00 0.00 45.76 4.94
4044 4463 6.040842 ACAGTTTCATATTTTGTGTGCTTCCT 59.959 34.615 0.00 0.00 0.00 3.36
4055 4474 7.658575 ACGTACTACCACACAGTTTCATATTTT 59.341 33.333 0.00 0.00 0.00 1.82
4059 4478 5.009911 ACACGTACTACCACACAGTTTCATA 59.990 40.000 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.