Multiple sequence alignment - TraesCS7B01G275200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G275200 chr7B 100.000 3845 0 0 1 3845 504454837 504458681 0.000000e+00 7101.0
1 TraesCS7B01G275200 chr7B 94.690 1450 42 16 1169 2589 504439324 504440767 0.000000e+00 2218.0
2 TraesCS7B01G275200 chr7B 98.847 607 1 1 1 607 504438072 504438672 0.000000e+00 1077.0
3 TraesCS7B01G275200 chr7B 89.254 456 24 14 3099 3540 504440920 504441364 7.260000e-152 547.0
4 TraesCS7B01G275200 chr7B 87.631 477 21 16 635 1107 504438670 504439112 1.580000e-143 520.0
5 TraesCS7B01G275200 chr7B 82.790 552 88 5 1818 2367 504493454 504492908 1.610000e-133 486.0
6 TraesCS7B01G275200 chr7B 92.308 156 12 0 2805 2960 504440768 504440923 5.000000e-54 222.0
7 TraesCS7B01G275200 chr7B 83.913 230 37 0 1214 1443 504495272 504495501 1.800000e-53 220.0
8 TraesCS7B01G275200 chr7B 74.798 496 119 6 1808 2300 503506894 503507386 6.470000e-53 219.0
9 TraesCS7B01G275200 chr7B 81.046 153 29 0 1549 1701 643462614 643462766 5.220000e-24 122.0
10 TraesCS7B01G275200 chr7B 90.426 94 8 1 3591 3684 727387088 727386996 5.220000e-24 122.0
11 TraesCS7B01G275200 chr7B 91.111 90 6 1 2963 3052 33530831 33530744 1.880000e-23 121.0
12 TraesCS7B01G275200 chr7B 88.298 94 10 1 3591 3684 548203810 548203718 1.130000e-20 111.0
13 TraesCS7B01G275200 chr7B 100.000 45 0 0 1517 1561 504494407 504494363 2.460000e-12 84.2
14 TraesCS7B01G275200 chr7B 94.000 50 3 0 3542 3591 504441399 504441448 4.120000e-10 76.8
15 TraesCS7B01G275200 chr7D 91.753 1831 85 29 1169 2960 478575664 478577467 0.000000e+00 2484.0
16 TraesCS7B01G275200 chr7D 90.957 575 39 8 1 571 478574711 478575276 0.000000e+00 761.0
17 TraesCS7B01G275200 chr7D 91.721 459 20 7 3099 3540 478577464 478577921 4.220000e-174 621.0
18 TraesCS7B01G275200 chr7D 82.609 552 89 5 1818 2367 478891975 478891429 7.470000e-132 481.0
19 TraesCS7B01G275200 chr7D 79.802 505 81 19 1214 1707 478892536 478892042 7.910000e-92 348.0
20 TraesCS7B01G275200 chr7D 89.844 256 17 3 654 905 478575279 478575529 1.720000e-83 320.0
21 TraesCS7B01G275200 chr7D 79.602 402 72 9 1905 2301 478328304 478328700 2.930000e-71 279.0
22 TraesCS7B01G275200 chr7D 77.941 408 74 14 1906 2302 478335712 478336114 1.380000e-59 241.0
23 TraesCS7B01G275200 chr7D 75.649 501 106 14 1808 2300 478370860 478371352 6.420000e-58 235.0
24 TraesCS7B01G275200 chr7D 90.123 162 12 1 1836 1993 478781162 478781323 1.400000e-49 207.0
25 TraesCS7B01G275200 chr7D 81.557 244 27 11 1677 1919 478758458 478758684 6.560000e-43 185.0
26 TraesCS7B01G275200 chr7D 94.253 87 5 0 1076 1162 478575542 478575628 2.410000e-27 134.0
27 TraesCS7B01G275200 chr7D 82.609 138 24 0 1552 1689 478327939 478328076 5.220000e-24 122.0
28 TraesCS7B01G275200 chr7D 84.298 121 10 3 2967 3087 498292242 498292353 4.060000e-20 110.0
29 TraesCS7B01G275200 chr7D 95.745 47 1 1 3671 3716 478577994 478578040 1.480000e-09 75.0
30 TraesCS7B01G275200 chr7A 90.196 1377 83 25 1177 2528 516515071 516513722 0.000000e+00 1748.0
31 TraesCS7B01G275200 chr7A 85.744 484 41 10 169 649 516795565 516795107 1.610000e-133 486.0
32 TraesCS7B01G275200 chr7A 83.231 489 73 6 1223 1707 516151817 516152300 1.270000e-119 440.0
33 TraesCS7B01G275200 chr7A 88.208 212 13 5 650 861 516515584 516515385 3.840000e-60 243.0
34 TraesCS7B01G275200 chr7A 83.453 139 23 0 1552 1690 516997856 516997718 3.120000e-26 130.0
35 TraesCS7B01G275200 chr7A 80.667 150 29 0 1552 1701 670946876 670946727 2.430000e-22 117.0
36 TraesCS7B01G275200 chr7A 89.888 89 8 1 3596 3684 152541545 152541632 3.140000e-21 113.0
37 TraesCS7B01G275200 chr7A 89.412 85 7 2 3591 3675 106951100 106951018 5.250000e-19 106.0
38 TraesCS7B01G275200 chr7A 92.000 50 4 0 3053 3102 8449091 8449140 1.920000e-08 71.3
39 TraesCS7B01G275200 chr7A 92.000 50 4 0 3053 3102 8464060 8464109 1.920000e-08 71.3
40 TraesCS7B01G275200 chrUn 100.000 391 0 0 28 418 479838832 479839222 0.000000e+00 723.0
41 TraesCS7B01G275200 chrUn 93.220 59 4 0 1811 1869 97111648 97111590 1.900000e-13 87.9
42 TraesCS7B01G275200 chr3D 88.701 177 13 4 2592 2767 87926166 87925996 3.890000e-50 209.0
43 TraesCS7B01G275200 chr3D 83.871 93 13 2 3593 3685 157344714 157344804 1.900000e-13 87.9
44 TraesCS7B01G275200 chr6B 89.024 164 12 3 2597 2759 702430838 702430996 8.430000e-47 198.0
45 TraesCS7B01G275200 chr6B 89.474 95 8 2 3591 3684 384834027 384834120 6.750000e-23 119.0
46 TraesCS7B01G275200 chr6B 86.170 94 12 1 3591 3684 423232507 423232599 2.440000e-17 100.0
47 TraesCS7B01G275200 chr6B 87.179 78 7 3 3591 3668 119012449 119012375 6.840000e-13 86.1
48 TraesCS7B01G275200 chr4D 87.425 167 15 3 2597 2762 117421352 117421191 1.820000e-43 187.0
49 TraesCS7B01G275200 chr4D 87.425 167 15 3 2597 2762 386984829 386984668 1.820000e-43 187.0
50 TraesCS7B01G275200 chr4D 83.099 142 17 7 2967 3107 681928 682063 5.220000e-24 122.0
51 TraesCS7B01G275200 chr4D 89.333 75 5 3 3028 3102 362785374 362785445 1.470000e-14 91.6
52 TraesCS7B01G275200 chr4D 89.189 74 5 3 3591 3664 9341922 9341852 5.290000e-14 89.8
53 TraesCS7B01G275200 chr4D 80.556 72 12 2 1364 1434 97720773 97720843 2.000000e-03 54.7
54 TraesCS7B01G275200 chr2B 87.805 164 13 4 2600 2762 560893541 560893384 6.560000e-43 185.0
55 TraesCS7B01G275200 chr2B 90.789 76 5 2 3028 3102 779852746 779852820 2.440000e-17 100.0
56 TraesCS7B01G275200 chr2B 80.180 111 13 7 708 816 768608129 768608026 1.480000e-09 75.0
57 TraesCS7B01G275200 chr6D 86.550 171 16 4 2597 2766 289353220 289353056 8.490000e-42 182.0
58 TraesCS7B01G275200 chr2D 87.195 164 14 4 2597 2759 478820738 478820895 3.050000e-41 180.0
59 TraesCS7B01G275200 chr2D 90.722 97 6 3 2963 3057 576293425 576293520 4.030000e-25 126.0
60 TraesCS7B01G275200 chr2D 84.146 82 10 3 3602 3681 163397500 163397420 4.120000e-10 76.8
61 TraesCS7B01G275200 chr3B 85.227 176 19 4 2593 2767 578615182 578615013 1.420000e-39 174.0
62 TraesCS7B01G275200 chr3B 87.218 133 12 3 2967 3098 825846066 825846194 3.100000e-31 147.0
63 TraesCS7B01G275200 chr3B 88.312 77 3 6 3053 3123 85623816 85623892 1.900000e-13 87.9
64 TraesCS7B01G275200 chr5B 84.672 137 14 5 2969 3102 339098415 339098547 3.120000e-26 130.0
65 TraesCS7B01G275200 chr5B 83.803 142 16 7 2967 3105 593926701 593926564 1.120000e-25 128.0
66 TraesCS7B01G275200 chr4B 88.462 104 11 1 3581 3684 587856413 587856515 1.450000e-24 124.0
67 TraesCS7B01G275200 chr4B 90.476 42 1 2 1407 1446 139511510 139511550 7.000000e-03 52.8
68 TraesCS7B01G275200 chr5D 83.333 138 13 7 2966 3102 435519835 435519963 6.750000e-23 119.0
69 TraesCS7B01G275200 chr5D 82.482 137 15 7 2967 3102 113407320 113407448 1.130000e-20 111.0
70 TraesCS7B01G275200 chr5D 88.608 79 7 2 3592 3670 332228679 332228603 1.140000e-15 95.3
71 TraesCS7B01G275200 chr5D 84.946 93 8 5 3591 3681 157721187 157721275 5.290000e-14 89.8
72 TraesCS7B01G275200 chr5D 84.722 72 10 1 3613 3684 485887150 485887220 1.920000e-08 71.3
73 TraesCS7B01G275200 chr5D 86.792 53 7 0 1382 1434 230505300 230505352 4.150000e-05 60.2
74 TraesCS7B01G275200 chr4A 91.463 82 4 3 3592 3673 691811007 691810929 4.060000e-20 110.0
75 TraesCS7B01G275200 chr4A 82.090 67 10 2 1369 1434 478219560 478219495 5.370000e-04 56.5
76 TraesCS7B01G275200 chr1B 88.172 93 10 1 3592 3684 108841222 108841131 4.060000e-20 110.0
77 TraesCS7B01G275200 chr2A 81.250 112 14 5 708 816 757897786 757897679 2.460000e-12 84.2
78 TraesCS7B01G275200 chr5A 86.792 53 7 0 1382 1434 326058130 326058078 4.150000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G275200 chr7B 504454837 504458681 3844 False 7101.0 7101 100.000000 1 3845 1 chr7B.!!$F2 3844
1 TraesCS7B01G275200 chr7B 504438072 504441448 3376 False 776.8 2218 92.788333 1 3591 6 chr7B.!!$F5 3590
2 TraesCS7B01G275200 chr7B 504492908 504494407 1499 True 285.1 486 91.395000 1517 2367 2 chr7B.!!$R4 850
3 TraesCS7B01G275200 chr7D 478574711 478578040 3329 False 732.5 2484 92.378833 1 3716 6 chr7D.!!$F7 3715
4 TraesCS7B01G275200 chr7D 478891429 478892536 1107 True 414.5 481 81.205500 1214 2367 2 chr7D.!!$R1 1153
5 TraesCS7B01G275200 chr7D 478327939 478328700 761 False 200.5 279 81.105500 1552 2301 2 chr7D.!!$F6 749
6 TraesCS7B01G275200 chr7A 516513722 516515584 1862 True 995.5 1748 89.202000 650 2528 2 chr7A.!!$R5 1878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 694 1.541588 GGCAGGACACCATTCAGTTTC 59.458 52.381 0.00 0.0 0.00 2.78 F
1465 1652 0.031585 AGCGTCGCACTTGACTGTAA 59.968 50.000 21.09 0.0 36.71 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 3292 1.73172 GTTGCATCTTCTCGGCTCTT 58.268 50.000 0.00 0.0 0.0 2.85 R
2960 3893 1.95299 GGAACGGAGGTAGTACTAGGC 59.047 57.143 1.87 0.0 0.0 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
423 427 8.614469 AAACTGTCATGAAACCTTTTTGAAAA 57.386 26.923 0.00 0.00 0.00 2.29
614 618 6.822073 CATCAATTAATGCAGGTTGTCATG 57.178 37.500 0.00 0.00 0.00 3.07
622 626 2.137523 GCAGGTTGTCATGCTTTTTGG 58.862 47.619 0.00 0.00 46.09 3.28
623 627 2.224018 GCAGGTTGTCATGCTTTTTGGA 60.224 45.455 0.00 0.00 46.09 3.53
624 628 3.645884 CAGGTTGTCATGCTTTTTGGAG 58.354 45.455 0.00 0.00 0.00 3.86
625 629 3.318839 CAGGTTGTCATGCTTTTTGGAGA 59.681 43.478 0.00 0.00 0.00 3.71
626 630 3.960102 AGGTTGTCATGCTTTTTGGAGAA 59.040 39.130 0.00 0.00 0.00 2.87
627 631 4.038402 AGGTTGTCATGCTTTTTGGAGAAG 59.962 41.667 0.00 0.00 0.00 2.85
628 632 4.037923 GGTTGTCATGCTTTTTGGAGAAGA 59.962 41.667 0.00 0.00 0.00 2.87
629 633 5.279156 GGTTGTCATGCTTTTTGGAGAAGAT 60.279 40.000 0.00 0.00 0.00 2.40
630 634 5.381174 TGTCATGCTTTTTGGAGAAGATG 57.619 39.130 0.00 0.00 0.00 2.90
631 635 4.219070 TGTCATGCTTTTTGGAGAAGATGG 59.781 41.667 0.00 0.00 0.00 3.51
632 636 4.219288 GTCATGCTTTTTGGAGAAGATGGT 59.781 41.667 0.00 0.00 0.00 3.55
633 637 4.834496 TCATGCTTTTTGGAGAAGATGGTT 59.166 37.500 0.00 0.00 0.00 3.67
634 638 6.009589 TCATGCTTTTTGGAGAAGATGGTTA 58.990 36.000 0.00 0.00 0.00 2.85
635 639 5.964958 TGCTTTTTGGAGAAGATGGTTAG 57.035 39.130 0.00 0.00 0.00 2.34
636 640 4.766891 TGCTTTTTGGAGAAGATGGTTAGG 59.233 41.667 0.00 0.00 0.00 2.69
652 656 4.767255 GGGCAGTCCAGTGCTCCG 62.767 72.222 6.35 0.00 43.45 4.63
690 694 1.541588 GGCAGGACACCATTCAGTTTC 59.458 52.381 0.00 0.00 0.00 2.78
773 777 5.596836 AGTTCTTTGCATCAAAACCAAGA 57.403 34.783 0.00 0.00 32.75 3.02
774 778 6.165700 AGTTCTTTGCATCAAAACCAAGAT 57.834 33.333 0.00 0.00 32.75 2.40
780 784 8.801299 TCTTTGCATCAAAACCAAGATATAACA 58.199 29.630 0.00 0.00 32.75 2.41
987 1001 5.260424 TGCGGGGTTAATGCATATGATATT 58.740 37.500 6.97 8.66 32.86 1.28
988 1002 6.418946 TGCGGGGTTAATGCATATGATATTA 58.581 36.000 6.97 7.70 32.86 0.98
991 1005 8.721478 GCGGGGTTAATGCATATGATATTATAG 58.279 37.037 6.97 3.03 0.00 1.31
992 1006 9.778741 CGGGGTTAATGCATATGATATTATAGT 57.221 33.333 6.97 0.00 0.00 2.12
1070 1089 9.672086 GGATAAGCACGTAATTATTGCAATTAA 57.328 29.630 18.75 10.12 38.81 1.40
1147 1295 3.743396 CAGCGGAAGAGCCATAAATAGAC 59.257 47.826 0.00 0.00 38.01 2.59
1246 1432 1.855295 TGGCTGGTCCTACGTTGATA 58.145 50.000 0.00 0.00 35.26 2.15
1247 1433 2.181125 TGGCTGGTCCTACGTTGATAA 58.819 47.619 0.00 0.00 35.26 1.75
1285 1471 1.999071 CTCTCCTCTCCTCCGTTGCG 61.999 65.000 0.00 0.00 0.00 4.85
1350 1536 0.321671 CTGGAGAACACCGTGTGGAT 59.678 55.000 4.57 0.00 37.94 3.41
1375 1561 0.462225 TGAAACAGGCCGTCGTCAAA 60.462 50.000 0.00 0.00 0.00 2.69
1443 1629 0.895530 TTCGTCCAGGTGATGACTCC 59.104 55.000 0.00 0.00 38.74 3.85
1462 1649 1.612469 CTCAGCGTCGCACTTGACTG 61.612 60.000 21.09 7.02 36.71 3.51
1465 1652 0.031585 AGCGTCGCACTTGACTGTAA 59.968 50.000 21.09 0.00 36.71 2.41
1486 1697 5.979288 AAAGTCTATACCTCACAGTTCGT 57.021 39.130 0.00 0.00 0.00 3.85
1512 1723 7.486802 TGATAATTCTGACATGCATGTACTG 57.513 36.000 31.45 24.35 41.95 2.74
1738 1999 2.088674 CTTAGCCATCGACTCCCGGG 62.089 65.000 16.85 16.85 39.14 5.73
2370 3292 4.676546 CAGATTCGTCAACAGCTAGATGA 58.323 43.478 16.32 0.00 0.00 2.92
2521 3454 3.757270 TCAAATCGCCCTTTGGTTTAGA 58.243 40.909 5.96 0.00 36.87 2.10
2533 3466 6.663523 CCCTTTGGTTTAGACTATTTGATGGT 59.336 38.462 0.00 0.00 0.00 3.55
2534 3467 7.148069 CCCTTTGGTTTAGACTATTTGATGGTC 60.148 40.741 0.00 0.00 40.63 4.02
2572 3505 4.593956 AGCTCTTTTAAGATGGTCCCAAG 58.406 43.478 0.00 0.00 33.93 3.61
2604 3537 5.998363 AGTCATCTGTTTTTGTTACTCCCTC 59.002 40.000 0.00 0.00 0.00 4.30
2607 3540 3.135167 TCTGTTTTTGTTACTCCCTCCGT 59.865 43.478 0.00 0.00 0.00 4.69
2609 3542 3.878699 TGTTTTTGTTACTCCCTCCGTTC 59.121 43.478 0.00 0.00 0.00 3.95
2611 3544 4.360951 TTTTGTTACTCCCTCCGTTCAT 57.639 40.909 0.00 0.00 0.00 2.57
2613 3546 5.486735 TTTGTTACTCCCTCCGTTCATAA 57.513 39.130 0.00 0.00 0.00 1.90
2615 3548 5.687166 TGTTACTCCCTCCGTTCATAAAT 57.313 39.130 0.00 0.00 0.00 1.40
2616 3549 6.795144 TGTTACTCCCTCCGTTCATAAATA 57.205 37.500 0.00 0.00 0.00 1.40
2617 3550 7.369551 TGTTACTCCCTCCGTTCATAAATAT 57.630 36.000 0.00 0.00 0.00 1.28
2618 3551 8.481492 TGTTACTCCCTCCGTTCATAAATATA 57.519 34.615 0.00 0.00 0.00 0.86
2619 3552 8.582437 TGTTACTCCCTCCGTTCATAAATATAG 58.418 37.037 0.00 0.00 0.00 1.31
2620 3553 6.607004 ACTCCCTCCGTTCATAAATATAGG 57.393 41.667 0.00 0.00 0.00 2.57
2621 3554 6.082707 ACTCCCTCCGTTCATAAATATAGGT 58.917 40.000 0.00 0.00 0.00 3.08
2622 3555 6.210984 ACTCCCTCCGTTCATAAATATAGGTC 59.789 42.308 0.00 0.00 0.00 3.85
2623 3556 6.320518 TCCCTCCGTTCATAAATATAGGTCT 58.679 40.000 0.00 0.00 0.00 3.85
2624 3557 6.785963 TCCCTCCGTTCATAAATATAGGTCTT 59.214 38.462 0.00 0.00 0.00 3.01
2625 3558 7.291651 TCCCTCCGTTCATAAATATAGGTCTTT 59.708 37.037 0.00 0.00 0.00 2.52
2626 3559 7.937394 CCCTCCGTTCATAAATATAGGTCTTTT 59.063 37.037 0.00 0.00 0.00 2.27
2627 3560 9.338622 CCTCCGTTCATAAATATAGGTCTTTTT 57.661 33.333 0.00 0.00 0.00 1.94
2710 3643 8.902540 TTCATTCATTTGCTCCGTATATAGTT 57.097 30.769 0.00 0.00 0.00 2.24
2759 3692 3.099141 ACGTATTTAGGAACGGAGGGAA 58.901 45.455 0.00 0.00 43.25 3.97
2924 3857 3.185246 ACTAGCTCACCATGCATGTAC 57.815 47.619 24.58 9.33 0.00 2.90
2960 3893 4.948847 TGACACTTGGCATATGCTAGTAG 58.051 43.478 26.12 17.65 41.70 2.57
2961 3894 3.733337 ACACTTGGCATATGCTAGTAGC 58.267 45.455 26.12 15.56 42.82 3.58
2962 3895 3.070018 CACTTGGCATATGCTAGTAGCC 58.930 50.000 26.12 9.24 41.51 3.93
2963 3896 2.975489 ACTTGGCATATGCTAGTAGCCT 59.025 45.455 26.12 12.23 45.42 4.58
2964 3897 4.021104 CACTTGGCATATGCTAGTAGCCTA 60.021 45.833 26.12 14.08 45.42 3.93
2965 3898 4.753233 CTTGGCATATGCTAGTAGCCTAG 58.247 47.826 26.12 9.66 45.42 3.02
2966 3899 3.779444 TGGCATATGCTAGTAGCCTAGT 58.221 45.455 26.12 5.79 45.42 2.57
2967 3900 4.930696 TGGCATATGCTAGTAGCCTAGTA 58.069 43.478 26.12 7.72 45.42 1.82
2968 3901 4.705507 TGGCATATGCTAGTAGCCTAGTAC 59.294 45.833 26.12 5.84 45.42 2.73
2969 3902 4.951094 GGCATATGCTAGTAGCCTAGTACT 59.049 45.833 26.12 0.00 41.51 2.73
2970 3903 6.120905 GGCATATGCTAGTAGCCTAGTACTA 58.879 44.000 26.12 1.89 41.51 1.82
2971 3904 6.038492 GGCATATGCTAGTAGCCTAGTACTAC 59.962 46.154 26.12 10.71 41.51 2.73
2972 3905 6.038492 GCATATGCTAGTAGCCTAGTACTACC 59.962 46.154 20.64 2.64 41.51 3.18
2973 3906 5.846528 ATGCTAGTAGCCTAGTACTACCT 57.153 43.478 19.41 1.30 41.51 3.08
2974 3907 5.226194 TGCTAGTAGCCTAGTACTACCTC 57.774 47.826 19.41 6.71 41.51 3.85
2975 3908 4.041444 TGCTAGTAGCCTAGTACTACCTCC 59.959 50.000 19.41 5.93 41.51 4.30
2976 3909 3.767902 AGTAGCCTAGTACTACCTCCG 57.232 52.381 13.75 0.00 40.77 4.63
2977 3910 3.044894 AGTAGCCTAGTACTACCTCCGT 58.955 50.000 13.75 0.00 40.77 4.69
2978 3911 3.457749 AGTAGCCTAGTACTACCTCCGTT 59.542 47.826 13.75 0.00 40.77 4.44
2979 3912 2.929641 AGCCTAGTACTACCTCCGTTC 58.070 52.381 0.00 0.00 0.00 3.95
2980 3913 1.952990 GCCTAGTACTACCTCCGTTCC 59.047 57.143 0.00 0.00 0.00 3.62
2981 3914 2.684927 GCCTAGTACTACCTCCGTTCCA 60.685 54.545 0.00 0.00 0.00 3.53
2982 3915 3.624777 CCTAGTACTACCTCCGTTCCAA 58.375 50.000 0.00 0.00 0.00 3.53
2983 3916 4.019174 CCTAGTACTACCTCCGTTCCAAA 58.981 47.826 0.00 0.00 0.00 3.28
2984 3917 4.463891 CCTAGTACTACCTCCGTTCCAAAA 59.536 45.833 0.00 0.00 0.00 2.44
2985 3918 5.128335 CCTAGTACTACCTCCGTTCCAAAAT 59.872 44.000 0.00 0.00 0.00 1.82
2986 3919 6.322201 CCTAGTACTACCTCCGTTCCAAAATA 59.678 42.308 0.00 0.00 0.00 1.40
2987 3920 6.218108 AGTACTACCTCCGTTCCAAAATAG 57.782 41.667 0.00 0.00 0.00 1.73
2988 3921 5.954150 AGTACTACCTCCGTTCCAAAATAGA 59.046 40.000 0.00 0.00 0.00 1.98
2989 3922 5.952347 ACTACCTCCGTTCCAAAATAGAT 57.048 39.130 0.00 0.00 0.00 1.98
2990 3923 5.671493 ACTACCTCCGTTCCAAAATAGATG 58.329 41.667 0.00 0.00 0.00 2.90
2991 3924 4.837093 ACCTCCGTTCCAAAATAGATGA 57.163 40.909 0.00 0.00 0.00 2.92
2992 3925 4.514401 ACCTCCGTTCCAAAATAGATGAC 58.486 43.478 0.00 0.00 0.00 3.06
2993 3926 4.225267 ACCTCCGTTCCAAAATAGATGACT 59.775 41.667 0.00 0.00 0.00 3.41
2994 3927 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2995 3928 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2996 3929 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2997 3930 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2998 3931 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2999 3932 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3000 3933 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3001 3934 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
3002 3935 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3003 3936 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3004 3937 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
3005 3938 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
3029 3962 9.330063 ACTAACTTTAGTACAAAGTTGGGTTAC 57.670 33.333 28.62 0.00 46.38 2.50
3030 3963 9.551734 CTAACTTTAGTACAAAGTTGGGTTACT 57.448 33.333 27.85 13.98 46.41 2.24
3032 3965 9.904198 AACTTTAGTACAAAGTTGGGTTACTAA 57.096 29.630 23.48 7.91 45.58 2.24
3033 3966 9.330063 ACTTTAGTACAAAGTTGGGTTACTAAC 57.670 33.333 14.04 0.00 37.18 2.34
3045 3978 9.904198 AGTTGGGTTACTAACTTTAGTACAAAA 57.096 29.630 8.14 0.00 44.81 2.44
3073 4006 9.328845 TGGGTTACTAACTTTAGTACAAAGTTG 57.671 33.333 27.85 22.56 46.41 3.16
3074 4007 8.777413 GGGTTACTAACTTTAGTACAAAGTTGG 58.223 37.037 27.85 27.10 46.41 3.77
3075 4008 8.777413 GGTTACTAACTTTAGTACAAAGTTGGG 58.223 37.037 28.62 24.26 46.38 4.12
3076 4009 9.330063 GTTACTAACTTTAGTACAAAGTTGGGT 57.670 33.333 28.62 26.41 46.38 4.51
3077 4010 9.546428 TTACTAACTTTAGTACAAAGTTGGGTC 57.454 33.333 28.62 0.00 46.38 4.46
3078 4011 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
3079 4012 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
3080 4013 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
3081 4014 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
3082 4015 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
3083 4016 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
3084 4017 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
3085 4018 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
3086 4019 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
3088 4021 9.802039 AGTACAAAGTTGGGTCATCTATTTTAA 57.198 29.630 0.00 0.00 0.00 1.52
3091 4024 9.758651 ACAAAGTTGGGTCATCTATTTTAAAAC 57.241 29.630 1.97 0.00 0.00 2.43
3092 4025 8.911662 CAAAGTTGGGTCATCTATTTTAAAACG 58.088 33.333 1.97 0.00 0.00 3.60
3093 4026 7.153217 AGTTGGGTCATCTATTTTAAAACGG 57.847 36.000 1.97 0.00 0.00 4.44
3094 4027 6.943718 AGTTGGGTCATCTATTTTAAAACGGA 59.056 34.615 1.97 5.09 0.00 4.69
3095 4028 6.995511 TGGGTCATCTATTTTAAAACGGAG 57.004 37.500 1.97 1.74 0.00 4.63
3096 4029 5.883673 TGGGTCATCTATTTTAAAACGGAGG 59.116 40.000 1.97 6.55 0.00 4.30
3097 4030 5.298527 GGGTCATCTATTTTAAAACGGAGGG 59.701 44.000 1.97 2.46 0.00 4.30
3098 4031 6.117488 GGTCATCTATTTTAAAACGGAGGGA 58.883 40.000 1.97 4.48 0.00 4.20
3099 4032 6.260271 GGTCATCTATTTTAAAACGGAGGGAG 59.740 42.308 1.97 0.00 0.00 4.30
3100 4033 6.822170 GTCATCTATTTTAAAACGGAGGGAGT 59.178 38.462 1.97 0.00 0.00 3.85
3101 4034 7.983484 GTCATCTATTTTAAAACGGAGGGAGTA 59.017 37.037 1.97 0.00 0.00 2.59
3180 4115 9.787532 ACAGTGTATCATATAAAAATTGTGTGC 57.212 29.630 0.00 0.00 0.00 4.57
3312 4258 7.115805 ACACTTAAATATATGGTATCACACGCG 59.884 37.037 3.53 3.53 0.00 6.01
3320 4266 1.916000 GGTATCACACGCGTGTCTTAC 59.084 52.381 39.88 35.54 42.83 2.34
3481 4434 5.053811 CGAACCAACCATATATAGTGCACA 58.946 41.667 21.04 5.47 0.00 4.57
3560 4546 2.749621 AGTTTGCCCTTGATCAATCGAC 59.250 45.455 8.96 3.01 0.00 4.20
3591 4577 5.515008 GGTCCAATTCCTCACTTACCTCTTT 60.515 44.000 0.00 0.00 0.00 2.52
3592 4578 6.004574 GTCCAATTCCTCACTTACCTCTTTT 58.995 40.000 0.00 0.00 0.00 2.27
3593 4579 6.490381 GTCCAATTCCTCACTTACCTCTTTTT 59.510 38.462 0.00 0.00 0.00 1.94
3594 4580 6.715264 TCCAATTCCTCACTTACCTCTTTTTC 59.285 38.462 0.00 0.00 0.00 2.29
3595 4581 6.717084 CCAATTCCTCACTTACCTCTTTTTCT 59.283 38.462 0.00 0.00 0.00 2.52
3596 4582 7.231519 CCAATTCCTCACTTACCTCTTTTTCTT 59.768 37.037 0.00 0.00 0.00 2.52
3597 4583 8.633561 CAATTCCTCACTTACCTCTTTTTCTTT 58.366 33.333 0.00 0.00 0.00 2.52
3598 4584 8.768501 ATTCCTCACTTACCTCTTTTTCTTTT 57.231 30.769 0.00 0.00 0.00 2.27
3599 4585 7.568199 TCCTCACTTACCTCTTTTTCTTTTG 57.432 36.000 0.00 0.00 0.00 2.44
3600 4586 7.343357 TCCTCACTTACCTCTTTTTCTTTTGA 58.657 34.615 0.00 0.00 0.00 2.69
3601 4587 7.832187 TCCTCACTTACCTCTTTTTCTTTTGAA 59.168 33.333 0.00 0.00 36.52 2.69
3602 4588 7.915923 CCTCACTTACCTCTTTTTCTTTTGAAC 59.084 37.037 0.00 0.00 38.30 3.18
3603 4589 8.343168 TCACTTACCTCTTTTTCTTTTGAACA 57.657 30.769 0.00 0.00 38.30 3.18
3604 4590 8.966868 TCACTTACCTCTTTTTCTTTTGAACAT 58.033 29.630 0.00 0.00 38.30 2.71
3605 4591 9.237846 CACTTACCTCTTTTTCTTTTGAACATC 57.762 33.333 0.00 0.00 38.30 3.06
3606 4592 8.966868 ACTTACCTCTTTTTCTTTTGAACATCA 58.033 29.630 0.00 0.00 38.30 3.07
3607 4593 9.455847 CTTACCTCTTTTTCTTTTGAACATCAG 57.544 33.333 0.00 0.00 38.30 2.90
3608 4594 7.410120 ACCTCTTTTTCTTTTGAACATCAGT 57.590 32.000 0.00 0.00 38.30 3.41
3609 4595 8.519799 ACCTCTTTTTCTTTTGAACATCAGTA 57.480 30.769 0.00 0.00 38.30 2.74
3610 4596 8.406297 ACCTCTTTTTCTTTTGAACATCAGTAC 58.594 33.333 0.00 0.00 38.30 2.73
3611 4597 8.405531 CCTCTTTTTCTTTTGAACATCAGTACA 58.594 33.333 0.00 0.00 38.30 2.90
3612 4598 9.443283 CTCTTTTTCTTTTGAACATCAGTACAG 57.557 33.333 0.00 0.00 38.30 2.74
3613 4599 9.173021 TCTTTTTCTTTTGAACATCAGTACAGA 57.827 29.630 0.00 0.00 38.30 3.41
3614 4600 9.226345 CTTTTTCTTTTGAACATCAGTACAGAC 57.774 33.333 0.00 0.00 38.30 3.51
3615 4601 7.857734 TTTCTTTTGAACATCAGTACAGACA 57.142 32.000 0.00 0.00 38.30 3.41
3616 4602 6.844696 TCTTTTGAACATCAGTACAGACAC 57.155 37.500 0.00 0.00 0.00 3.67
3617 4603 6.345298 TCTTTTGAACATCAGTACAGACACA 58.655 36.000 0.00 0.00 0.00 3.72
3618 4604 6.821160 TCTTTTGAACATCAGTACAGACACAA 59.179 34.615 0.00 0.00 0.00 3.33
3619 4605 6.993786 TTTGAACATCAGTACAGACACAAA 57.006 33.333 0.00 2.00 0.00 2.83
3620 4606 5.984233 TGAACATCAGTACAGACACAAAC 57.016 39.130 0.00 0.00 0.00 2.93
3621 4607 4.506288 TGAACATCAGTACAGACACAAACG 59.494 41.667 0.00 0.00 0.00 3.60
3622 4608 4.316205 ACATCAGTACAGACACAAACGA 57.684 40.909 0.00 0.00 0.00 3.85
3623 4609 4.883083 ACATCAGTACAGACACAAACGAT 58.117 39.130 0.00 0.00 0.00 3.73
3624 4610 4.923871 ACATCAGTACAGACACAAACGATC 59.076 41.667 0.00 0.00 0.00 3.69
3625 4611 3.561503 TCAGTACAGACACAAACGATCG 58.438 45.455 14.88 14.88 0.00 3.69
3626 4612 3.004002 TCAGTACAGACACAAACGATCGT 59.996 43.478 16.60 16.60 0.00 3.73
3627 4613 4.213906 TCAGTACAGACACAAACGATCGTA 59.786 41.667 23.04 0.00 0.00 3.43
3628 4614 5.093457 CAGTACAGACACAAACGATCGTAT 58.907 41.667 23.04 9.12 0.00 3.06
3629 4615 6.092533 TCAGTACAGACACAAACGATCGTATA 59.907 38.462 23.04 0.68 0.00 1.47
3630 4616 6.194142 CAGTACAGACACAAACGATCGTATAC 59.806 42.308 23.04 11.90 0.00 1.47
3631 4617 5.050644 ACAGACACAAACGATCGTATACA 57.949 39.130 23.04 0.00 0.00 2.29
3632 4618 4.855388 ACAGACACAAACGATCGTATACAC 59.145 41.667 23.04 11.53 0.00 2.90
3643 4629 1.750351 CGTATACACGCGCATACACT 58.250 50.000 19.70 0.00 42.05 3.55
3644 4630 1.707117 CGTATACACGCGCATACACTC 59.293 52.381 19.70 0.00 42.05 3.51
3645 4631 2.723209 GTATACACGCGCATACACTCA 58.277 47.619 5.73 0.00 0.00 3.41
3646 4632 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
3647 4633 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
3648 4634 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
3649 4635 3.254654 CGCGCATACACTCACCCG 61.255 66.667 8.75 0.00 0.00 5.28
3650 4636 2.125673 GCGCATACACTCACCCGT 60.126 61.111 0.30 0.00 0.00 5.28
3651 4637 1.140161 GCGCATACACTCACCCGTA 59.860 57.895 0.30 0.00 0.00 4.02
3652 4638 0.249322 GCGCATACACTCACCCGTAT 60.249 55.000 0.30 0.00 0.00 3.06
3653 4639 1.487482 CGCATACACTCACCCGTATG 58.513 55.000 0.00 0.00 45.07 2.39
3654 4640 1.066454 CGCATACACTCACCCGTATGA 59.934 52.381 12.46 0.00 45.09 2.15
3655 4641 2.480587 CGCATACACTCACCCGTATGAA 60.481 50.000 12.46 0.00 45.09 2.57
3656 4642 3.728845 GCATACACTCACCCGTATGAAT 58.271 45.455 12.46 0.00 45.09 2.57
3657 4643 3.494626 GCATACACTCACCCGTATGAATG 59.505 47.826 12.46 0.00 45.09 2.67
3658 4644 2.024176 ACACTCACCCGTATGAATGC 57.976 50.000 0.00 0.00 28.78 3.56
3659 4645 1.277842 ACACTCACCCGTATGAATGCA 59.722 47.619 0.00 0.00 28.78 3.96
3660 4646 1.665679 CACTCACCCGTATGAATGCAC 59.334 52.381 0.00 0.00 0.00 4.57
3661 4647 1.277842 ACTCACCCGTATGAATGCACA 59.722 47.619 0.00 0.00 0.00 4.57
3662 4648 1.665679 CTCACCCGTATGAATGCACAC 59.334 52.381 0.00 0.00 0.00 3.82
3663 4649 1.002544 TCACCCGTATGAATGCACACA 59.997 47.619 0.00 0.00 0.00 3.72
3664 4650 1.398041 CACCCGTATGAATGCACACAG 59.602 52.381 0.00 0.00 0.00 3.66
3665 4651 1.016627 CCCGTATGAATGCACACAGG 58.983 55.000 0.00 0.00 0.00 4.00
3666 4652 0.378257 CCGTATGAATGCACACAGGC 59.622 55.000 0.00 0.00 0.00 4.85
3685 4671 2.236395 GGCACACACTACCTCTTATGGT 59.764 50.000 0.00 0.00 43.66 3.55
3716 4702 6.560304 AGGGAGCATATTAAAATCTCCTCAGA 59.440 38.462 12.89 0.00 42.16 3.27
3717 4703 6.652900 GGGAGCATATTAAAATCTCCTCAGAC 59.347 42.308 12.89 0.00 42.16 3.51
3718 4704 7.220030 GGAGCATATTAAAATCTCCTCAGACA 58.780 38.462 0.00 0.00 40.02 3.41
3719 4705 7.387397 GGAGCATATTAAAATCTCCTCAGACAG 59.613 40.741 0.00 0.00 40.02 3.51
3720 4706 7.222872 AGCATATTAAAATCTCCTCAGACAGG 58.777 38.462 0.00 0.00 45.15 4.00
3721 4707 6.072783 GCATATTAAAATCTCCTCAGACAGGC 60.073 42.308 0.00 0.00 43.08 4.85
3722 4708 2.393271 AAAATCTCCTCAGACAGGCG 57.607 50.000 0.00 0.00 43.08 5.52
3723 4709 1.561643 AAATCTCCTCAGACAGGCGA 58.438 50.000 0.00 0.00 43.08 5.54
3724 4710 1.561643 AATCTCCTCAGACAGGCGAA 58.438 50.000 0.00 0.00 39.58 4.70
3725 4711 1.561643 ATCTCCTCAGACAGGCGAAA 58.438 50.000 0.00 0.00 39.58 3.46
3726 4712 0.891373 TCTCCTCAGACAGGCGAAAG 59.109 55.000 0.00 0.00 43.08 2.62
3727 4713 0.891373 CTCCTCAGACAGGCGAAAGA 59.109 55.000 0.00 0.00 43.08 2.52
3728 4714 0.603569 TCCTCAGACAGGCGAAAGAC 59.396 55.000 0.00 0.00 43.08 3.01
3729 4715 0.318441 CCTCAGACAGGCGAAAGACA 59.682 55.000 0.00 0.00 46.78 3.41
3730 4716 1.270305 CCTCAGACAGGCGAAAGACAA 60.270 52.381 0.00 0.00 46.78 3.18
3731 4717 1.795286 CTCAGACAGGCGAAAGACAAC 59.205 52.381 0.00 0.00 46.78 3.32
3732 4718 1.138069 TCAGACAGGCGAAAGACAACA 59.862 47.619 0.00 0.00 46.78 3.33
3733 4719 1.939934 CAGACAGGCGAAAGACAACAA 59.060 47.619 0.00 0.00 46.78 2.83
3734 4720 2.549754 CAGACAGGCGAAAGACAACAAT 59.450 45.455 0.00 0.00 46.78 2.71
3735 4721 2.549754 AGACAGGCGAAAGACAACAATG 59.450 45.455 0.00 0.00 46.78 2.82
3736 4722 2.290641 GACAGGCGAAAGACAACAATGT 59.709 45.455 0.00 0.00 46.78 2.71
3737 4723 2.687935 ACAGGCGAAAGACAACAATGTT 59.312 40.909 0.00 0.00 46.78 2.71
3738 4724 3.880490 ACAGGCGAAAGACAACAATGTTA 59.120 39.130 0.00 0.00 46.78 2.41
3739 4725 4.024048 ACAGGCGAAAGACAACAATGTTAG 60.024 41.667 0.00 0.00 46.78 2.34
3740 4726 4.024048 CAGGCGAAAGACAACAATGTTAGT 60.024 41.667 0.00 0.00 46.78 2.24
3741 4727 5.178623 CAGGCGAAAGACAACAATGTTAGTA 59.821 40.000 0.00 0.00 46.78 1.82
3742 4728 5.938125 AGGCGAAAGACAACAATGTTAGTAT 59.062 36.000 0.00 0.00 46.78 2.12
3743 4729 6.092259 AGGCGAAAGACAACAATGTTAGTATC 59.908 38.462 0.00 0.00 46.78 2.24
3744 4730 6.092259 GGCGAAAGACAACAATGTTAGTATCT 59.908 38.462 0.00 0.00 40.74 1.98
3745 4731 7.174082 GCGAAAGACAACAATGTTAGTATCTC 58.826 38.462 0.00 0.00 40.74 2.75
3746 4732 7.384124 CGAAAGACAACAATGTTAGTATCTCG 58.616 38.462 0.00 2.04 40.74 4.04
3747 4733 7.061905 CGAAAGACAACAATGTTAGTATCTCGT 59.938 37.037 0.00 0.00 40.74 4.18
3748 4734 8.603242 AAAGACAACAATGTTAGTATCTCGTT 57.397 30.769 0.00 0.00 40.74 3.85
3749 4735 8.603242 AAGACAACAATGTTAGTATCTCGTTT 57.397 30.769 0.00 0.00 40.74 3.60
3750 4736 8.240883 AGACAACAATGTTAGTATCTCGTTTC 57.759 34.615 0.00 0.00 40.74 2.78
3751 4737 7.870954 AGACAACAATGTTAGTATCTCGTTTCA 59.129 33.333 0.00 0.00 40.74 2.69
3752 4738 8.373048 ACAACAATGTTAGTATCTCGTTTCAA 57.627 30.769 0.00 0.00 35.91 2.69
3753 4739 8.999431 ACAACAATGTTAGTATCTCGTTTCAAT 58.001 29.630 0.00 0.00 35.91 2.57
3830 4816 6.977213 TGCTACCAACACTTAAAAGATTTCC 58.023 36.000 0.00 0.00 0.00 3.13
3831 4817 6.547880 TGCTACCAACACTTAAAAGATTTCCA 59.452 34.615 0.00 0.00 0.00 3.53
3832 4818 7.232534 TGCTACCAACACTTAAAAGATTTCCAT 59.767 33.333 0.00 0.00 0.00 3.41
3833 4819 7.542130 GCTACCAACACTTAAAAGATTTCCATG 59.458 37.037 0.00 0.00 0.00 3.66
3834 4820 7.360113 ACCAACACTTAAAAGATTTCCATGT 57.640 32.000 0.00 0.00 0.00 3.21
3835 4821 8.472007 ACCAACACTTAAAAGATTTCCATGTA 57.528 30.769 0.00 0.00 0.00 2.29
3836 4822 9.088987 ACCAACACTTAAAAGATTTCCATGTAT 57.911 29.630 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
607 611 5.279106 CCATCTTCTCCAAAAAGCATGACAA 60.279 40.000 0.00 0.00 0.00 3.18
608 612 4.219070 CCATCTTCTCCAAAAAGCATGACA 59.781 41.667 0.00 0.00 0.00 3.58
609 613 4.219288 ACCATCTTCTCCAAAAAGCATGAC 59.781 41.667 0.00 0.00 0.00 3.06
610 614 4.410099 ACCATCTTCTCCAAAAAGCATGA 58.590 39.130 0.00 0.00 0.00 3.07
611 615 4.796038 ACCATCTTCTCCAAAAAGCATG 57.204 40.909 0.00 0.00 0.00 4.06
612 616 5.420104 CCTAACCATCTTCTCCAAAAAGCAT 59.580 40.000 0.00 0.00 0.00 3.79
613 617 4.766891 CCTAACCATCTTCTCCAAAAAGCA 59.233 41.667 0.00 0.00 0.00 3.91
614 618 4.158579 CCCTAACCATCTTCTCCAAAAAGC 59.841 45.833 0.00 0.00 0.00 3.51
615 619 4.158579 GCCCTAACCATCTTCTCCAAAAAG 59.841 45.833 0.00 0.00 0.00 2.27
616 620 4.086457 GCCCTAACCATCTTCTCCAAAAA 58.914 43.478 0.00 0.00 0.00 1.94
617 621 3.075283 TGCCCTAACCATCTTCTCCAAAA 59.925 43.478 0.00 0.00 0.00 2.44
618 622 2.647299 TGCCCTAACCATCTTCTCCAAA 59.353 45.455 0.00 0.00 0.00 3.28
619 623 2.239654 CTGCCCTAACCATCTTCTCCAA 59.760 50.000 0.00 0.00 0.00 3.53
620 624 1.839994 CTGCCCTAACCATCTTCTCCA 59.160 52.381 0.00 0.00 0.00 3.86
621 625 1.840635 ACTGCCCTAACCATCTTCTCC 59.159 52.381 0.00 0.00 0.00 3.71
622 626 2.158885 GGACTGCCCTAACCATCTTCTC 60.159 54.545 0.00 0.00 0.00 2.87
623 627 1.840635 GGACTGCCCTAACCATCTTCT 59.159 52.381 0.00 0.00 0.00 2.85
624 628 1.559682 TGGACTGCCCTAACCATCTTC 59.440 52.381 0.00 0.00 35.38 2.87
625 629 1.561542 CTGGACTGCCCTAACCATCTT 59.438 52.381 0.00 0.00 35.38 2.40
626 630 1.207791 CTGGACTGCCCTAACCATCT 58.792 55.000 0.00 0.00 35.38 2.90
627 631 0.912486 ACTGGACTGCCCTAACCATC 59.088 55.000 0.00 0.00 35.38 3.51
628 632 0.620556 CACTGGACTGCCCTAACCAT 59.379 55.000 0.00 0.00 35.38 3.55
629 633 2.066340 CACTGGACTGCCCTAACCA 58.934 57.895 0.00 0.00 35.38 3.67
630 634 1.377333 GCACTGGACTGCCCTAACC 60.377 63.158 0.00 0.00 35.38 2.85
631 635 0.391793 GAGCACTGGACTGCCCTAAC 60.392 60.000 0.00 0.00 37.96 2.34
632 636 1.553690 GGAGCACTGGACTGCCCTAA 61.554 60.000 0.00 0.00 37.96 2.69
633 637 1.990060 GGAGCACTGGACTGCCCTA 60.990 63.158 0.00 0.00 37.96 3.53
634 638 3.325753 GGAGCACTGGACTGCCCT 61.326 66.667 0.00 0.00 37.96 5.19
635 639 4.767255 CGGAGCACTGGACTGCCC 62.767 72.222 0.00 0.00 37.96 5.36
636 640 3.695606 TCGGAGCACTGGACTGCC 61.696 66.667 0.00 0.00 37.96 4.85
652 656 5.775701 TCCTGCCTAAGATATAGTCCAAGTC 59.224 44.000 0.00 0.00 0.00 3.01
690 694 7.229306 ACACTAAATATGGTGCCACATCATAAG 59.771 37.037 4.76 1.60 40.26 1.73
780 784 8.055279 TGTGTTTTGAGAGAGAAAAGAAATGT 57.945 30.769 0.00 0.00 0.00 2.71
845 853 6.316440 TGACGCGTTATATGGTGTATCTTA 57.684 37.500 15.53 0.00 0.00 2.10
846 854 5.190992 TGACGCGTTATATGGTGTATCTT 57.809 39.130 15.53 0.00 0.00 2.40
847 855 4.841443 TGACGCGTTATATGGTGTATCT 57.159 40.909 15.53 0.00 0.00 1.98
960 974 4.160439 TCATATGCATTAACCCCGCAAAAA 59.840 37.500 3.54 0.00 39.48 1.94
961 975 3.701542 TCATATGCATTAACCCCGCAAAA 59.298 39.130 3.54 0.00 39.48 2.44
962 976 3.291584 TCATATGCATTAACCCCGCAAA 58.708 40.909 3.54 0.00 39.48 3.68
964 978 2.647683 TCATATGCATTAACCCCGCA 57.352 45.000 3.54 0.00 40.50 5.69
965 979 5.835113 AATATCATATGCATTAACCCCGC 57.165 39.130 3.54 0.00 0.00 6.13
966 980 9.778741 ACTATAATATCATATGCATTAACCCCG 57.221 33.333 3.54 0.00 0.00 5.73
1012 1027 3.629142 ACTGCATAAGGGTACTCCAAC 57.371 47.619 0.00 0.00 38.24 3.77
1099 1118 4.019681 CCCCGGGAGTAGAAATTATATGCA 60.020 45.833 26.32 0.00 0.00 3.96
1100 1119 4.514401 CCCCGGGAGTAGAAATTATATGC 58.486 47.826 26.32 0.00 0.00 3.14
1165 1314 4.772118 ACTCAAGGGAACTGGGGT 57.228 55.556 0.00 0.00 41.70 4.95
1166 1315 0.771127 TTCACTCAAGGGAACTGGGG 59.229 55.000 0.00 0.00 42.68 4.96
1202 1387 3.243177 GCGATCAAGTTAGGTTCGTGATC 59.757 47.826 10.21 10.21 42.67 2.92
1350 1536 0.605319 GACGGCCTGTTTCATCACCA 60.605 55.000 0.00 0.00 0.00 4.17
1443 1629 1.372251 AGTCAAGTGCGACGCTGAG 60.372 57.895 22.08 8.47 40.98 3.35
1462 1649 6.850555 ACGAACTGTGAGGTATAGACTTTAC 58.149 40.000 0.00 0.00 0.00 2.01
1465 1652 6.827251 TCATACGAACTGTGAGGTATAGACTT 59.173 38.462 0.00 0.00 0.00 3.01
1486 1697 9.211485 CAGTACATGCATGTCAGAATTATCATA 57.789 33.333 34.54 10.71 41.97 2.15
2370 3292 1.731720 GTTGCATCTTCTCGGCTCTT 58.268 50.000 0.00 0.00 0.00 2.85
2444 3372 6.966632 TCACTTCTTGTGTTTTTCGAAAGATG 59.033 34.615 10.98 7.70 46.27 2.90
2521 3454 9.685276 TCTGTAAAATCATGACCATCAAATAGT 57.315 29.630 0.00 0.00 0.00 2.12
2533 3466 7.750229 AAAGAGCTTGTCTGTAAAATCATGA 57.250 32.000 0.00 0.00 34.84 3.07
2534 3467 9.897744 TTAAAAGAGCTTGTCTGTAAAATCATG 57.102 29.630 0.00 0.00 34.84 3.07
2572 3505 6.467723 ACAAAAACAGATGACTCGTATCAC 57.532 37.500 0.00 0.00 0.00 3.06
2737 3670 3.897239 TCCCTCCGTTCCTAAATACGTA 58.103 45.455 0.00 0.00 36.09 3.57
2738 3671 2.738743 TCCCTCCGTTCCTAAATACGT 58.261 47.619 0.00 0.00 36.09 3.57
2739 3672 3.806625 TTCCCTCCGTTCCTAAATACG 57.193 47.619 0.00 0.00 37.50 3.06
2924 3857 7.592938 TGCCAAGTGTCAACAAATAGAATAAG 58.407 34.615 0.00 0.00 0.00 1.73
2960 3893 1.952990 GGAACGGAGGTAGTACTAGGC 59.047 57.143 1.87 0.00 0.00 3.93
2961 3894 3.287867 TGGAACGGAGGTAGTACTAGG 57.712 52.381 1.87 0.00 0.00 3.02
2962 3895 5.649782 TTTTGGAACGGAGGTAGTACTAG 57.350 43.478 1.87 0.00 0.00 2.57
2963 3896 7.118723 TCTATTTTGGAACGGAGGTAGTACTA 58.881 38.462 0.00 0.00 0.00 1.82
2964 3897 5.954150 TCTATTTTGGAACGGAGGTAGTACT 59.046 40.000 0.00 0.00 0.00 2.73
2965 3898 6.212888 TCTATTTTGGAACGGAGGTAGTAC 57.787 41.667 0.00 0.00 0.00 2.73
2966 3899 6.608405 TCATCTATTTTGGAACGGAGGTAGTA 59.392 38.462 0.00 0.00 0.00 1.82
2967 3900 5.424252 TCATCTATTTTGGAACGGAGGTAGT 59.576 40.000 0.00 0.00 0.00 2.73
2968 3901 5.753921 GTCATCTATTTTGGAACGGAGGTAG 59.246 44.000 0.00 0.00 0.00 3.18
2969 3902 5.424252 AGTCATCTATTTTGGAACGGAGGTA 59.576 40.000 0.00 0.00 0.00 3.08
2970 3903 4.225267 AGTCATCTATTTTGGAACGGAGGT 59.775 41.667 0.00 0.00 0.00 3.85
2971 3904 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2972 3905 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2973 3906 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2974 3907 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2975 3908 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2976 3909 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
2977 3910 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
2978 3911 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
2979 3912 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
3003 3936 9.330063 GTAACCCAACTTTGTACTAAAGTTAGT 57.670 33.333 23.56 21.18 45.57 2.24
3004 3937 9.551734 AGTAACCCAACTTTGTACTAAAGTTAG 57.448 33.333 23.56 20.79 45.57 2.34
3007 3940 9.330063 GTTAGTAACCCAACTTTGTACTAAAGT 57.670 33.333 14.04 14.04 41.82 2.66
3008 3941 9.551734 AGTTAGTAACCCAACTTTGTACTAAAG 57.448 33.333 9.46 13.08 30.89 1.85
3009 3942 9.904198 AAGTTAGTAACCCAACTTTGTACTAAA 57.096 29.630 9.46 0.00 41.09 1.85
3018 3951 9.904198 TTTGTACTAAAGTTAGTAACCCAACTT 57.096 29.630 11.56 0.00 45.03 2.66
3019 3952 9.904198 TTTTGTACTAAAGTTAGTAACCCAACT 57.096 29.630 11.56 0.00 45.03 3.16
3046 3979 9.904198 AACTTTGTACTAAAGTTAGTAACCCAA 57.096 29.630 23.13 9.48 45.51 4.12
3047 3980 9.328845 CAACTTTGTACTAAAGTTAGTAACCCA 57.671 33.333 23.56 4.75 45.57 4.51
3048 3981 8.777413 CCAACTTTGTACTAAAGTTAGTAACCC 58.223 37.037 23.56 2.56 45.57 4.11
3049 3982 8.777413 CCCAACTTTGTACTAAAGTTAGTAACC 58.223 37.037 23.56 3.15 45.57 2.85
3050 3983 9.330063 ACCCAACTTTGTACTAAAGTTAGTAAC 57.670 33.333 23.56 4.78 45.57 2.50
3051 3984 9.546428 GACCCAACTTTGTACTAAAGTTAGTAA 57.454 33.333 23.56 0.00 45.57 2.24
3052 3985 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
3053 3986 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
3054 3987 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
3055 3988 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
3057 3990 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
3058 3991 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
3059 3992 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
3060 3993 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
3062 3995 9.802039 TTAAAATAGATGACCCAACTTTGTACT 57.198 29.630 0.00 0.00 0.00 2.73
3065 3998 9.758651 GTTTTAAAATAGATGACCCAACTTTGT 57.241 29.630 3.52 0.00 0.00 2.83
3066 3999 8.911662 CGTTTTAAAATAGATGACCCAACTTTG 58.088 33.333 3.52 0.00 0.00 2.77
3067 4000 8.085909 CCGTTTTAAAATAGATGACCCAACTTT 58.914 33.333 3.52 0.00 0.00 2.66
3068 4001 7.449086 TCCGTTTTAAAATAGATGACCCAACTT 59.551 33.333 3.52 0.00 0.00 2.66
3069 4002 6.943718 TCCGTTTTAAAATAGATGACCCAACT 59.056 34.615 3.52 0.00 0.00 3.16
3070 4003 7.148355 TCCGTTTTAAAATAGATGACCCAAC 57.852 36.000 3.52 0.00 0.00 3.77
3071 4004 6.376018 CCTCCGTTTTAAAATAGATGACCCAA 59.624 38.462 3.52 0.00 0.00 4.12
3072 4005 5.883673 CCTCCGTTTTAAAATAGATGACCCA 59.116 40.000 3.52 0.00 0.00 4.51
3073 4006 5.298527 CCCTCCGTTTTAAAATAGATGACCC 59.701 44.000 3.52 0.00 0.00 4.46
3074 4007 6.117488 TCCCTCCGTTTTAAAATAGATGACC 58.883 40.000 3.52 0.00 0.00 4.02
3075 4008 6.822170 ACTCCCTCCGTTTTAAAATAGATGAC 59.178 38.462 3.52 0.00 0.00 3.06
3076 4009 6.954232 ACTCCCTCCGTTTTAAAATAGATGA 58.046 36.000 3.52 3.96 0.00 2.92
3077 4010 8.904099 ATACTCCCTCCGTTTTAAAATAGATG 57.096 34.615 3.52 2.01 0.00 2.90
3167 4102 7.043961 TCCACATACTTGCACACAATTTTTA 57.956 32.000 0.00 0.00 34.61 1.52
3173 4108 3.207265 ACTCCACATACTTGCACACAA 57.793 42.857 0.00 0.00 0.00 3.33
3499 4452 6.084326 ACAAATTTAATGTCCACGCTTTCT 57.916 33.333 0.00 0.00 0.00 2.52
3533 4486 2.297033 TGATCAAGGGCAAACTGAAAGC 59.703 45.455 0.00 0.00 37.60 3.51
3540 4493 2.476185 CGTCGATTGATCAAGGGCAAAC 60.476 50.000 14.54 5.43 0.00 2.93
3560 4546 0.107654 GAGGAATTGGACCCCAGTCG 60.108 60.000 0.00 0.00 44.54 4.18
3591 4577 7.335673 TGTGTCTGTACTGATGTTCAAAAGAAA 59.664 33.333 5.69 0.00 0.00 2.52
3592 4578 6.821160 TGTGTCTGTACTGATGTTCAAAAGAA 59.179 34.615 5.69 0.00 0.00 2.52
3593 4579 6.345298 TGTGTCTGTACTGATGTTCAAAAGA 58.655 36.000 5.69 0.00 0.00 2.52
3594 4580 6.603237 TGTGTCTGTACTGATGTTCAAAAG 57.397 37.500 5.69 0.00 0.00 2.27
3595 4581 6.993786 TTGTGTCTGTACTGATGTTCAAAA 57.006 33.333 5.69 0.00 0.00 2.44
3596 4582 6.456315 CGTTTGTGTCTGTACTGATGTTCAAA 60.456 38.462 5.69 11.23 0.00 2.69
3597 4583 5.006261 CGTTTGTGTCTGTACTGATGTTCAA 59.994 40.000 5.69 6.72 0.00 2.69
3598 4584 4.506288 CGTTTGTGTCTGTACTGATGTTCA 59.494 41.667 5.69 0.00 0.00 3.18
3599 4585 4.743151 TCGTTTGTGTCTGTACTGATGTTC 59.257 41.667 5.69 0.00 0.00 3.18
3600 4586 4.689071 TCGTTTGTGTCTGTACTGATGTT 58.311 39.130 5.69 0.00 0.00 2.71
3601 4587 4.316205 TCGTTTGTGTCTGTACTGATGT 57.684 40.909 5.69 0.00 0.00 3.06
3602 4588 4.030641 CGATCGTTTGTGTCTGTACTGATG 59.969 45.833 7.03 0.00 0.00 3.07
3603 4589 4.166523 CGATCGTTTGTGTCTGTACTGAT 58.833 43.478 7.03 0.00 0.00 2.90
3604 4590 3.004002 ACGATCGTTTGTGTCTGTACTGA 59.996 43.478 16.60 0.00 0.00 3.41
3605 4591 3.305964 ACGATCGTTTGTGTCTGTACTG 58.694 45.455 16.60 0.00 0.00 2.74
3606 4592 3.637998 ACGATCGTTTGTGTCTGTACT 57.362 42.857 16.60 0.00 0.00 2.73
3607 4593 6.021939 GTGTATACGATCGTTTGTGTCTGTAC 60.022 42.308 27.88 11.45 0.00 2.90
3608 4594 6.023435 GTGTATACGATCGTTTGTGTCTGTA 58.977 40.000 27.88 4.05 0.00 2.74
3609 4595 4.855388 GTGTATACGATCGTTTGTGTCTGT 59.145 41.667 27.88 0.00 0.00 3.41
3610 4596 5.357445 GTGTATACGATCGTTTGTGTCTG 57.643 43.478 27.88 0.00 0.00 3.51
3625 4611 2.466571 GTGAGTGTATGCGCGTGTATAC 59.533 50.000 24.72 24.72 42.15 1.47
3626 4612 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
3627 4613 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
3628 4614 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
3629 4615 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
3630 4616 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
3631 4617 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
3632 4618 2.601628 TACGGGTGAGTGTATGCGCG 62.602 60.000 0.00 0.00 41.82 6.86
3633 4619 0.249322 ATACGGGTGAGTGTATGCGC 60.249 55.000 0.00 0.00 30.39 6.09
3634 4620 1.066454 TCATACGGGTGAGTGTATGCG 59.934 52.381 7.34 0.00 44.76 4.73
3635 4621 2.882927 TCATACGGGTGAGTGTATGC 57.117 50.000 7.34 0.00 44.76 3.14
3636 4622 3.494626 GCATTCATACGGGTGAGTGTATG 59.505 47.826 13.49 6.12 45.89 2.39
3637 4623 3.133901 TGCATTCATACGGGTGAGTGTAT 59.866 43.478 13.49 0.00 37.92 2.29
3638 4624 2.498078 TGCATTCATACGGGTGAGTGTA 59.502 45.455 13.49 8.40 37.92 2.90
3639 4625 1.277842 TGCATTCATACGGGTGAGTGT 59.722 47.619 13.49 0.00 37.92 3.55
3640 4626 1.665679 GTGCATTCATACGGGTGAGTG 59.334 52.381 9.45 9.45 38.45 3.51
3641 4627 1.277842 TGTGCATTCATACGGGTGAGT 59.722 47.619 0.00 0.00 0.00 3.41
3642 4628 1.665679 GTGTGCATTCATACGGGTGAG 59.334 52.381 0.00 0.00 0.00 3.51
3643 4629 1.002544 TGTGTGCATTCATACGGGTGA 59.997 47.619 0.00 0.00 37.16 4.02
3644 4630 1.398041 CTGTGTGCATTCATACGGGTG 59.602 52.381 0.00 0.00 37.14 4.61
3645 4631 1.737838 CTGTGTGCATTCATACGGGT 58.262 50.000 0.00 0.00 37.14 5.28
3647 4633 0.378257 GCCTGTGTGCATTCATACGG 59.622 55.000 0.00 0.00 39.52 4.02
3648 4634 1.085893 TGCCTGTGTGCATTCATACG 58.914 50.000 0.00 0.00 37.16 3.06
3649 4635 1.811965 TGTGCCTGTGTGCATTCATAC 59.188 47.619 0.00 0.00 44.30 2.39
3650 4636 1.811965 GTGTGCCTGTGTGCATTCATA 59.188 47.619 0.00 0.00 44.30 2.15
3651 4637 0.599558 GTGTGCCTGTGTGCATTCAT 59.400 50.000 0.00 0.00 44.30 2.57
3652 4638 0.750911 TGTGTGCCTGTGTGCATTCA 60.751 50.000 0.00 0.00 44.30 2.57
3653 4639 0.318107 GTGTGTGCCTGTGTGCATTC 60.318 55.000 0.00 0.00 44.30 2.67
3654 4640 0.752743 AGTGTGTGCCTGTGTGCATT 60.753 50.000 0.00 0.00 44.30 3.56
3655 4641 0.108396 TAGTGTGTGCCTGTGTGCAT 59.892 50.000 0.00 0.00 44.30 3.96
3656 4642 0.813610 GTAGTGTGTGCCTGTGTGCA 60.814 55.000 0.00 0.00 39.37 4.57
3657 4643 1.507141 GGTAGTGTGTGCCTGTGTGC 61.507 60.000 0.00 0.00 0.00 4.57
3658 4644 0.106708 AGGTAGTGTGTGCCTGTGTG 59.893 55.000 0.00 0.00 40.40 3.82
3659 4645 0.393077 GAGGTAGTGTGTGCCTGTGT 59.607 55.000 0.00 0.00 42.38 3.72
3660 4646 0.681733 AGAGGTAGTGTGTGCCTGTG 59.318 55.000 0.00 0.00 42.38 3.66
3661 4647 1.424638 AAGAGGTAGTGTGTGCCTGT 58.575 50.000 0.00 0.00 42.38 4.00
3662 4648 3.525537 CATAAGAGGTAGTGTGTGCCTG 58.474 50.000 0.00 0.00 42.38 4.85
3663 4649 2.501723 CCATAAGAGGTAGTGTGTGCCT 59.498 50.000 0.00 0.00 45.67 4.75
3664 4650 2.236395 ACCATAAGAGGTAGTGTGTGCC 59.764 50.000 0.00 0.00 40.98 5.01
3665 4651 3.262420 CACCATAAGAGGTAGTGTGTGC 58.738 50.000 0.00 0.00 40.77 4.57
3666 4652 4.537135 ACACCATAAGAGGTAGTGTGTG 57.463 45.455 0.00 0.00 40.77 3.82
3667 4653 6.014647 TCTTACACCATAAGAGGTAGTGTGT 58.985 40.000 4.45 0.00 41.51 3.72
3668 4654 6.525578 TCTTACACCATAAGAGGTAGTGTG 57.474 41.667 4.45 0.00 41.51 3.82
3669 4655 6.777213 CTCTTACACCATAAGAGGTAGTGT 57.223 41.667 13.60 0.00 44.03 3.55
3685 4671 8.157476 GGAGATTTTAATATGCTCCCTCTTACA 58.843 37.037 0.00 0.00 39.33 2.41
3716 4702 2.297701 ACATTGTTGTCTTTCGCCTGT 58.702 42.857 0.00 0.00 0.00 4.00
3717 4703 3.354089 AACATTGTTGTCTTTCGCCTG 57.646 42.857 0.15 0.00 34.06 4.85
3718 4704 4.134563 ACTAACATTGTTGTCTTTCGCCT 58.865 39.130 12.30 0.00 34.06 5.52
3719 4705 4.483476 ACTAACATTGTTGTCTTTCGCC 57.517 40.909 12.30 0.00 34.06 5.54
3720 4706 7.061752 AGATACTAACATTGTTGTCTTTCGC 57.938 36.000 12.30 0.00 34.06 4.70
3721 4707 7.061905 ACGAGATACTAACATTGTTGTCTTTCG 59.938 37.037 12.30 15.83 34.06 3.46
3722 4708 8.240883 ACGAGATACTAACATTGTTGTCTTTC 57.759 34.615 12.30 5.53 34.06 2.62
3723 4709 8.603242 AACGAGATACTAACATTGTTGTCTTT 57.397 30.769 12.30 1.42 34.06 2.52
3724 4710 8.603242 AAACGAGATACTAACATTGTTGTCTT 57.397 30.769 12.30 1.18 34.06 3.01
3725 4711 7.870954 TGAAACGAGATACTAACATTGTTGTCT 59.129 33.333 12.30 9.55 34.06 3.41
3726 4712 8.014322 TGAAACGAGATACTAACATTGTTGTC 57.986 34.615 12.30 5.39 34.06 3.18
3727 4713 7.956420 TGAAACGAGATACTAACATTGTTGT 57.044 32.000 12.30 10.22 37.82 3.32
3804 4790 8.088365 GGAAATCTTTTAAGTGTTGGTAGCAAT 58.912 33.333 11.06 0.00 0.00 3.56
3805 4791 7.068839 TGGAAATCTTTTAAGTGTTGGTAGCAA 59.931 33.333 2.54 2.54 0.00 3.91
3806 4792 6.547880 TGGAAATCTTTTAAGTGTTGGTAGCA 59.452 34.615 0.00 0.00 0.00 3.49
3807 4793 6.977213 TGGAAATCTTTTAAGTGTTGGTAGC 58.023 36.000 0.00 0.00 0.00 3.58
3808 4794 8.576442 ACATGGAAATCTTTTAAGTGTTGGTAG 58.424 33.333 0.00 0.00 0.00 3.18
3809 4795 8.472007 ACATGGAAATCTTTTAAGTGTTGGTA 57.528 30.769 0.00 0.00 0.00 3.25
3810 4796 7.360113 ACATGGAAATCTTTTAAGTGTTGGT 57.640 32.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.