Multiple sequence alignment - TraesCS7B01G274700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G274700 chr7B 100.000 5710 0 0 1 5710 504196444 504190735 0.000000e+00 10545.0
1 TraesCS7B01G274700 chr7B 90.323 124 11 1 2804 2926 504193414 504193291 1.650000e-35 161.0
2 TraesCS7B01G274700 chr7B 90.323 124 11 1 3031 3154 504193641 504193519 1.650000e-35 161.0
3 TraesCS7B01G274700 chr7B 78.261 276 40 12 4816 5087 169360158 169359899 5.920000e-35 159.0
4 TraesCS7B01G274700 chr2B 94.291 3661 110 22 1481 5077 87917839 87921464 0.000000e+00 5511.0
5 TraesCS7B01G274700 chr2B 98.026 912 18 0 41 952 652843440 652842529 0.000000e+00 1585.0
6 TraesCS7B01G274700 chr2B 94.737 684 23 6 5035 5710 87921476 87922154 0.000000e+00 1051.0
7 TraesCS7B01G274700 chr2B 94.878 449 17 6 951 1396 708691618 708691173 0.000000e+00 697.0
8 TraesCS7B01G274700 chr2B 89.516 124 12 1 3031 3154 87919163 87919285 7.660000e-34 156.0
9 TraesCS7B01G274700 chr2B 90.179 112 8 1 4968 5079 790882708 790882600 5.960000e-30 143.0
10 TraesCS7B01G274700 chr2B 87.273 110 12 2 4797 4904 450365713 450365604 2.160000e-24 124.0
11 TraesCS7B01G274700 chr4B 89.958 1663 110 28 3176 4806 112040551 112038914 0.000000e+00 2093.0
12 TraesCS7B01G274700 chr4B 97.598 916 22 0 36 951 139749233 139750148 0.000000e+00 1570.0
13 TraesCS7B01G274700 chr4B 93.029 416 23 3 5297 5710 112038304 112037893 2.280000e-168 603.0
14 TraesCS7B01G274700 chr4B 81.830 743 73 30 2219 2931 112041344 112040634 8.300000e-158 568.0
15 TraesCS7B01G274700 chr4B 88.000 400 38 4 1531 1921 112042506 112042108 1.120000e-126 464.0
16 TraesCS7B01G274700 chr4B 100.000 39 0 0 1 39 125385457 125385419 7.940000e-09 73.1
17 TraesCS7B01G274700 chr4B 100.000 39 0 0 1 39 139749002 139749040 7.940000e-09 73.1
18 TraesCS7B01G274700 chr4B 100.000 39 0 0 1 39 147354583 147354545 7.940000e-09 73.1
19 TraesCS7B01G274700 chr1D 90.414 1617 89 30 3176 4753 465132862 465131273 0.000000e+00 2067.0
20 TraesCS7B01G274700 chr1D 88.978 626 41 19 5093 5710 465131272 465130667 0.000000e+00 749.0
21 TraesCS7B01G274700 chr1D 82.953 745 62 29 2222 2931 465133659 465132945 3.780000e-171 612.0
22 TraesCS7B01G274700 chr1D 88.630 387 28 7 1536 1915 465134830 465134453 1.880000e-124 457.0
23 TraesCS7B01G274700 chr3A 89.801 1657 91 27 3176 4806 22204791 22206395 0.000000e+00 2052.0
24 TraesCS7B01G274700 chr3A 98.316 950 16 0 1 950 506476013 506475064 0.000000e+00 1666.0
25 TraesCS7B01G274700 chr3A 97.598 916 22 0 36 951 199418222 199419137 0.000000e+00 1570.0
26 TraesCS7B01G274700 chr3A 89.081 925 72 21 3896 4806 22220951 22221860 0.000000e+00 1122.0
27 TraesCS7B01G274700 chr3A 88.395 922 81 19 3897 4806 22218424 22219331 0.000000e+00 1086.0
28 TraesCS7B01G274700 chr3A 89.665 716 57 13 2219 2926 22203999 22204705 0.000000e+00 896.0
29 TraesCS7B01G274700 chr3A 88.413 630 46 17 5086 5708 22219326 22219935 0.000000e+00 734.0
30 TraesCS7B01G274700 chr3A 88.273 631 42 19 5086 5709 22206390 22206995 0.000000e+00 726.0
31 TraesCS7B01G274700 chr3A 87.678 633 49 16 5086 5709 22221855 22222467 0.000000e+00 710.0
32 TraesCS7B01G274700 chr3A 89.975 399 33 6 1536 1929 22200029 22200425 5.100000e-140 508.0
33 TraesCS7B01G274700 chr3A 91.736 121 10 0 1728 1848 49520302 49520422 9.840000e-38 169.0
34 TraesCS7B01G274700 chr3A 80.751 213 24 9 4800 5008 344517006 344517205 3.560000e-32 150.0
35 TraesCS7B01G274700 chr3A 85.507 138 14 4 3023 3155 22204570 22204706 7.710000e-29 139.0
36 TraesCS7B01G274700 chr4A 98.031 965 17 2 1 963 645406034 645405070 0.000000e+00 1676.0
37 TraesCS7B01G274700 chr4A 91.525 118 10 0 1731 1848 587724512 587724395 4.580000e-36 163.0
38 TraesCS7B01G274700 chr4A 87.903 124 15 0 1725 1848 630613157 630613280 4.610000e-31 147.0
39 TraesCS7B01G274700 chrUn 97.817 916 20 0 36 951 309590224 309589309 0.000000e+00 1581.0
40 TraesCS7B01G274700 chrUn 97.817 916 20 0 36 951 361598124 361599039 0.000000e+00 1581.0
41 TraesCS7B01G274700 chrUn 78.247 308 44 12 4801 5087 82563477 82563782 5.880000e-40 176.0
42 TraesCS7B01G274700 chrUn 100.000 39 0 0 1 39 309590455 309590417 7.940000e-09 73.1
43 TraesCS7B01G274700 chrUn 100.000 39 0 0 1 39 361597893 361597931 7.940000e-09 73.1
44 TraesCS7B01G274700 chrUn 100.000 39 0 0 1 39 464871369 464871331 7.940000e-09 73.1
45 TraesCS7B01G274700 chr1A 97.817 916 20 0 36 951 63756583 63755668 0.000000e+00 1581.0
46 TraesCS7B01G274700 chr1A 88.994 1263 61 25 3577 4808 557492605 557491390 0.000000e+00 1491.0
47 TraesCS7B01G274700 chr1A 82.172 746 69 28 2219 2931 557494158 557493444 2.970000e-162 582.0
48 TraesCS7B01G274700 chr1A 88.654 379 31 8 1539 1915 557495195 557494827 8.720000e-123 451.0
49 TraesCS7B01G274700 chr1A 87.563 394 35 8 3176 3567 557493361 557492980 1.460000e-120 444.0
50 TraesCS7B01G274700 chr1A 95.475 221 9 1 5491 5710 557491258 557491038 9.100000e-93 351.0
51 TraesCS7B01G274700 chr1A 89.552 134 8 2 5103 5230 557491387 557491254 1.270000e-36 165.0
52 TraesCS7B01G274700 chr1A 100.000 39 0 0 1 39 320468986 320468948 7.940000e-09 73.1
53 TraesCS7B01G274700 chr1B 97.609 920 21 1 36 955 167923640 167922722 0.000000e+00 1576.0
54 TraesCS7B01G274700 chr1B 87.179 117 15 0 1731 1847 40283681 40283565 3.590000e-27 134.0
55 TraesCS7B01G274700 chr7D 88.104 269 24 6 5225 5492 363048662 363048923 4.300000e-81 313.0
56 TraesCS7B01G274700 chr7D 78.964 309 38 14 4802 5087 21096715 21096411 9.770000e-43 185.0
57 TraesCS7B01G274700 chr7D 89.524 105 10 1 4801 4904 193847922 193847818 1.290000e-26 132.0
58 TraesCS7B01G274700 chr7D 81.290 155 25 4 4801 4953 30291988 30291836 7.770000e-24 122.0
59 TraesCS7B01G274700 chr4D 87.786 262 24 4 5232 5492 145579761 145579507 3.340000e-77 300.0
60 TraesCS7B01G274700 chr4D 92.742 124 9 0 1725 1848 210025388 210025511 4.550000e-41 180.0
61 TraesCS7B01G274700 chr4D 78.571 308 32 13 4801 5087 118151158 118151452 7.610000e-39 172.0
62 TraesCS7B01G274700 chr4D 88.571 105 11 1 4801 4904 348162717 348162613 6.010000e-25 126.0
63 TraesCS7B01G274700 chr5B 87.121 264 26 4 5233 5495 446430450 446430706 5.600000e-75 292.0
64 TraesCS7B01G274700 chr6D 78.095 315 45 9 4801 5097 25472149 25471841 1.630000e-40 178.0
65 TraesCS7B01G274700 chr6A 91.736 121 10 0 1725 1845 616334583 616334703 9.840000e-38 169.0
66 TraesCS7B01G274700 chr6A 85.714 133 13 6 4958 5088 6747335 6747207 9.980000e-28 135.0
67 TraesCS7B01G274700 chr5D 77.778 306 47 13 4798 5088 210677896 210678195 9.840000e-38 169.0
68 TraesCS7B01G274700 chr5D 77.273 308 36 12 4801 5087 222228114 222228408 3.560000e-32 150.0
69 TraesCS7B01G274700 chr2A 92.373 118 9 0 1731 1848 708689560 708689443 9.840000e-38 169.0
70 TraesCS7B01G274700 chr7A 90.323 124 12 0 1725 1848 106588797 106588920 4.580000e-36 163.0
71 TraesCS7B01G274700 chr7A 90.323 124 12 0 1725 1848 617959835 617959958 4.580000e-36 163.0
72 TraesCS7B01G274700 chr5A 81.517 211 26 6 4800 5008 575066937 575067136 1.650000e-35 161.0
73 TraesCS7B01G274700 chr5A 89.516 124 13 0 1725 1848 388936607 388936730 2.130000e-34 158.0
74 TraesCS7B01G274700 chr5A 89.744 117 12 0 1732 1848 683752010 683752126 3.560000e-32 150.0
75 TraesCS7B01G274700 chr3B 80.751 213 24 9 4800 5008 310521991 310521792 3.560000e-32 150.0
76 TraesCS7B01G274700 chr2D 88.333 120 12 1 4968 5087 544336461 544336578 5.960000e-30 143.0
77 TraesCS7B01G274700 chr2D 76.623 308 38 11 4801 5087 418555180 418555474 7.710000e-29 139.0
78 TraesCS7B01G274700 chr2D 85.496 131 15 2 4958 5087 337562309 337562182 3.590000e-27 134.0
79 TraesCS7B01G274700 chr6B 76.655 287 33 13 4801 5066 645179777 645180050 1.670000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G274700 chr7B 504190735 504196444 5709 True 3622.333333 10545 93.548667 1 5710 3 chr7B.!!$R2 5709
1 TraesCS7B01G274700 chr2B 87917839 87922154 4315 False 2239.333333 5511 92.848000 1481 5710 3 chr2B.!!$F1 4229
2 TraesCS7B01G274700 chr2B 652842529 652843440 911 True 1585.000000 1585 98.026000 41 952 1 chr2B.!!$R2 911
3 TraesCS7B01G274700 chr4B 112037893 112042506 4613 True 932.000000 2093 88.204250 1531 5710 4 chr4B.!!$R3 4179
4 TraesCS7B01G274700 chr4B 139749002 139750148 1146 False 821.550000 1570 98.799000 1 951 2 chr4B.!!$F1 950
5 TraesCS7B01G274700 chr1D 465130667 465134830 4163 True 971.250000 2067 87.743750 1536 5710 4 chr1D.!!$R1 4174
6 TraesCS7B01G274700 chr3A 506475064 506476013 949 True 1666.000000 1666 98.316000 1 950 1 chr3A.!!$R1 949
7 TraesCS7B01G274700 chr3A 199418222 199419137 915 False 1570.000000 1570 97.598000 36 951 1 chr3A.!!$F2 915
8 TraesCS7B01G274700 chr3A 22218424 22222467 4043 False 913.000000 1122 88.391750 3896 5709 4 chr3A.!!$F5 1813
9 TraesCS7B01G274700 chr3A 22200029 22206995 6966 False 864.200000 2052 88.644200 1536 5709 5 chr3A.!!$F4 4173
10 TraesCS7B01G274700 chr4A 645405070 645406034 964 True 1676.000000 1676 98.031000 1 963 1 chr4A.!!$R2 962
11 TraesCS7B01G274700 chrUn 309589309 309590455 1146 True 827.050000 1581 98.908500 1 951 2 chrUn.!!$R2 950
12 TraesCS7B01G274700 chrUn 361597893 361599039 1146 False 827.050000 1581 98.908500 1 951 2 chrUn.!!$F2 950
13 TraesCS7B01G274700 chr1A 63755668 63756583 915 True 1581.000000 1581 97.817000 36 951 1 chr1A.!!$R1 915
14 TraesCS7B01G274700 chr1A 557491038 557495195 4157 True 580.666667 1491 88.735000 1539 5710 6 chr1A.!!$R3 4171
15 TraesCS7B01G274700 chr1B 167922722 167923640 918 True 1576.000000 1576 97.609000 36 955 1 chr1B.!!$R2 919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 1158 0.323087 AATTTACTCCACCCACGGCC 60.323 55.0 0.0 0.0 0.00 6.13 F
1050 1247 0.037232 CAACTCCCTCACGAACCCTC 60.037 60.0 0.0 0.0 0.00 4.30 F
1309 1506 0.109532 TCGCCCAAACATCAAGGTGA 59.890 50.0 0.0 0.0 36.58 4.02 F
1311 1508 0.244721 GCCCAAACATCAAGGTGAGC 59.755 55.0 0.0 0.0 0.00 4.26 F
1528 1725 0.323302 TCTGTATCAACCCGCAGCAA 59.677 50.0 0.0 0.0 0.00 3.91 F
2261 5829 1.879575 TTCCACAGGGTCTAGGGATG 58.120 55.0 0.0 0.0 34.93 3.51 F
3909 7964 1.734655 TCTCAGACAAAGAGGCCCTT 58.265 50.0 0.0 0.0 36.47 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 5820 0.691078 AGGAAAGCCGCATCCCTAGA 60.691 55.000 10.68 0.0 39.96 2.43 R
2261 5829 0.955919 AGCTACACAAGGAAAGCCGC 60.956 55.000 0.00 0.0 39.96 6.53 R
2472 6047 1.005242 CACATTTCTCAGAGCGCATCG 60.005 52.381 11.47 0.0 0.00 3.84 R
2789 6372 1.588239 AGCTCTCAACATGATCCCCA 58.412 50.000 0.00 0.0 0.00 4.96 R
2976 6587 2.762535 TCCCCTTTAAGAGCAACTCG 57.237 50.000 0.00 0.0 35.36 4.18 R
4180 8244 2.069273 AGTTTCGCGTCCATCTGAAAG 58.931 47.619 5.77 0.0 31.55 2.62 R
5540 10154 0.240945 GGCTCCATTGTTGTGAACGG 59.759 55.000 0.00 0.0 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 250 7.735917 ACATATAAACACCTAATGCTGCTCTA 58.264 34.615 0.00 0.00 0.00 2.43
193 390 5.049405 GTGCTAAACATGCAGACAGTAAACT 60.049 40.000 0.00 0.00 41.41 2.66
289 486 1.661341 GATGCCATGAGTCCACTGAC 58.339 55.000 0.00 0.00 42.09 3.51
308 505 3.712907 GGCGGTGCTAGGGTTGGA 61.713 66.667 0.00 0.00 0.00 3.53
514 711 2.756400 CCTAGGGCACAGCAACCA 59.244 61.111 0.00 0.00 0.00 3.67
563 760 4.308458 CCGCGGTGGAGGTGACAA 62.308 66.667 19.50 0.00 42.00 3.18
955 1152 2.790433 TCTGTGCAATTTACTCCACCC 58.210 47.619 0.00 0.00 0.00 4.61
956 1153 2.107378 TCTGTGCAATTTACTCCACCCA 59.893 45.455 0.00 0.00 0.00 4.51
957 1154 2.228822 CTGTGCAATTTACTCCACCCAC 59.771 50.000 0.00 0.00 0.00 4.61
958 1155 1.199097 GTGCAATTTACTCCACCCACG 59.801 52.381 0.00 0.00 0.00 4.94
959 1156 0.808755 GCAATTTACTCCACCCACGG 59.191 55.000 0.00 0.00 0.00 4.94
960 1157 0.808755 CAATTTACTCCACCCACGGC 59.191 55.000 0.00 0.00 0.00 5.68
961 1158 0.323087 AATTTACTCCACCCACGGCC 60.323 55.000 0.00 0.00 0.00 6.13
962 1159 2.206182 ATTTACTCCACCCACGGCCC 62.206 60.000 0.00 0.00 0.00 5.80
972 1169 3.697747 CACGGCCCGGGTACAGAA 61.698 66.667 24.63 0.00 0.00 3.02
981 1178 4.787999 GGTACAGAACCGAGCGAG 57.212 61.111 0.00 0.00 38.88 5.03
982 1179 1.516603 GGTACAGAACCGAGCGAGC 60.517 63.158 0.00 0.00 38.88 5.03
983 1180 1.516603 GTACAGAACCGAGCGAGCC 60.517 63.158 0.00 0.00 0.00 4.70
1001 1198 4.261701 CCCCCTCTCTCGAATCGT 57.738 61.111 1.52 0.00 0.00 3.73
1003 1200 0.386113 CCCCCTCTCTCGAATCGTTC 59.614 60.000 1.52 0.00 0.00 3.95
1004 1201 0.386113 CCCCTCTCTCGAATCGTTCC 59.614 60.000 1.52 0.00 0.00 3.62
1005 1202 0.386113 CCCTCTCTCGAATCGTTCCC 59.614 60.000 1.52 0.00 0.00 3.97
1006 1203 0.386113 CCTCTCTCGAATCGTTCCCC 59.614 60.000 1.52 0.00 0.00 4.81
1007 1204 1.394618 CTCTCTCGAATCGTTCCCCT 58.605 55.000 1.52 0.00 0.00 4.79
1008 1205 1.066303 CTCTCTCGAATCGTTCCCCTG 59.934 57.143 1.52 0.00 0.00 4.45
1011 1208 1.747355 TCTCGAATCGTTCCCCTGTAC 59.253 52.381 1.52 0.00 0.00 2.90
1012 1209 1.749634 CTCGAATCGTTCCCCTGTACT 59.250 52.381 1.52 0.00 0.00 2.73
1014 1211 1.202382 CGAATCGTTCCCCTGTACTCC 60.202 57.143 0.00 0.00 0.00 3.85
1015 1212 2.108970 GAATCGTTCCCCTGTACTCCT 58.891 52.381 0.00 0.00 0.00 3.69
1017 1214 1.553706 TCGTTCCCCTGTACTCCTTC 58.446 55.000 0.00 0.00 0.00 3.46
1018 1215 0.172803 CGTTCCCCTGTACTCCTTCG 59.827 60.000 0.00 0.00 0.00 3.79
1019 1216 0.108281 GTTCCCCTGTACTCCTTCGC 60.108 60.000 0.00 0.00 0.00 4.70
1022 1219 1.433879 CCCTGTACTCCTTCGCTCG 59.566 63.158 0.00 0.00 0.00 5.03
1023 1220 1.313812 CCCTGTACTCCTTCGCTCGT 61.314 60.000 0.00 0.00 0.00 4.18
1024 1221 1.376543 CCTGTACTCCTTCGCTCGTA 58.623 55.000 0.00 0.00 0.00 3.43
1025 1222 1.063764 CCTGTACTCCTTCGCTCGTAC 59.936 57.143 0.00 0.00 34.37 3.67
1027 1224 1.466167 TGTACTCCTTCGCTCGTACAC 59.534 52.381 0.00 0.00 37.78 2.90
1029 1226 1.139095 CTCCTTCGCTCGTACACCC 59.861 63.158 0.00 0.00 0.00 4.61
1030 1227 2.202570 CCTTCGCTCGTACACCCG 60.203 66.667 0.00 0.00 0.00 5.28
1031 1228 2.879462 CTTCGCTCGTACACCCGC 60.879 66.667 0.00 0.00 0.00 6.13
1032 1229 3.620300 CTTCGCTCGTACACCCGCA 62.620 63.158 0.00 0.00 0.00 5.69
1033 1230 3.210223 TTCGCTCGTACACCCGCAA 62.210 57.895 0.00 0.00 0.00 4.85
1034 1231 3.475774 CGCTCGTACACCCGCAAC 61.476 66.667 0.00 0.00 0.00 4.17
1035 1232 2.048503 GCTCGTACACCCGCAACT 60.049 61.111 0.00 0.00 0.00 3.16
1036 1233 2.092882 GCTCGTACACCCGCAACTC 61.093 63.158 0.00 0.00 0.00 3.01
1037 1234 1.445582 CTCGTACACCCGCAACTCC 60.446 63.158 0.00 0.00 0.00 3.85
1038 1235 2.433664 CGTACACCCGCAACTCCC 60.434 66.667 0.00 0.00 0.00 4.30
1040 1237 1.079336 GTACACCCGCAACTCCCTC 60.079 63.158 0.00 0.00 0.00 4.30
1041 1238 1.534476 TACACCCGCAACTCCCTCA 60.534 57.895 0.00 0.00 0.00 3.86
1042 1239 1.823169 TACACCCGCAACTCCCTCAC 61.823 60.000 0.00 0.00 0.00 3.51
1043 1240 4.003788 ACCCGCAACTCCCTCACG 62.004 66.667 0.00 0.00 0.00 4.35
1046 1243 2.027625 CCGCAACTCCCTCACGAAC 61.028 63.158 0.00 0.00 0.00 3.95
1047 1244 2.027625 CGCAACTCCCTCACGAACC 61.028 63.158 0.00 0.00 0.00 3.62
1048 1245 1.671379 GCAACTCCCTCACGAACCC 60.671 63.158 0.00 0.00 0.00 4.11
1050 1247 0.037232 CAACTCCCTCACGAACCCTC 60.037 60.000 0.00 0.00 0.00 4.30
1051 1248 0.471211 AACTCCCTCACGAACCCTCA 60.471 55.000 0.00 0.00 0.00 3.86
1054 1251 1.374252 CCCTCACGAACCCTCAACG 60.374 63.158 0.00 0.00 0.00 4.10
1055 1252 2.027625 CCTCACGAACCCTCAACGC 61.028 63.158 0.00 0.00 0.00 4.84
1056 1253 2.027625 CTCACGAACCCTCAACGCC 61.028 63.158 0.00 0.00 0.00 5.68
1057 1254 3.411351 CACGAACCCTCAACGCCG 61.411 66.667 0.00 0.00 0.00 6.46
1094 1291 4.208686 CGCCTGCTACCCCTCGTC 62.209 72.222 0.00 0.00 0.00 4.20
1095 1292 4.208686 GCCTGCTACCCCTCGTCG 62.209 72.222 0.00 0.00 0.00 5.12
1096 1293 4.208686 CCTGCTACCCCTCGTCGC 62.209 72.222 0.00 0.00 33.82 5.19
1097 1294 4.208686 CTGCTACCCCTCGTCGCC 62.209 72.222 0.00 0.00 32.22 5.54
1106 1303 4.609247 CTCGTCGCCGGTCGGATC 62.609 72.222 14.15 8.12 39.05 3.36
1109 1306 4.267503 GTCGCCGGTCGGATCCTC 62.268 72.222 14.15 2.64 39.05 3.71
1111 1308 3.967335 CGCCGGTCGGATCCTCTC 61.967 72.222 14.15 0.00 37.50 3.20
1112 1309 3.607661 GCCGGTCGGATCCTCTCC 61.608 72.222 14.15 8.28 41.07 3.71
1113 1310 2.196229 CCGGTCGGATCCTCTCCT 59.804 66.667 10.75 0.00 42.47 3.69
1114 1311 1.899534 CCGGTCGGATCCTCTCCTC 60.900 68.421 10.75 0.00 42.47 3.71
1115 1312 1.899534 CGGTCGGATCCTCTCCTCC 60.900 68.421 10.75 2.37 42.47 4.30
1119 1316 2.200092 GGATCCTCTCCTCCGCCT 59.800 66.667 3.84 0.00 41.29 5.52
1120 1317 1.906333 GGATCCTCTCCTCCGCCTC 60.906 68.421 3.84 0.00 41.29 4.70
1121 1318 1.906333 GATCCTCTCCTCCGCCTCC 60.906 68.421 0.00 0.00 0.00 4.30
1124 1321 2.277072 CTCTCCTCCGCCTCCAGA 59.723 66.667 0.00 0.00 0.00 3.86
1125 1322 1.152567 CTCTCCTCCGCCTCCAGAT 60.153 63.158 0.00 0.00 0.00 2.90
1126 1323 1.152652 TCTCCTCCGCCTCCAGATC 60.153 63.158 0.00 0.00 0.00 2.75
1128 1325 3.610669 CCTCCGCCTCCAGATCCG 61.611 72.222 0.00 0.00 0.00 4.18
1129 1326 3.610669 CTCCGCCTCCAGATCCGG 61.611 72.222 0.00 0.00 41.97 5.14
1133 1330 4.554036 GCCTCCAGATCCGGCCAC 62.554 72.222 2.24 0.00 37.86 5.01
1134 1331 3.866582 CCTCCAGATCCGGCCACC 61.867 72.222 2.24 0.00 0.00 4.61
1135 1332 3.866582 CTCCAGATCCGGCCACCC 61.867 72.222 2.24 0.00 0.00 4.61
1138 1335 4.181010 CAGATCCGGCCACCCCTG 62.181 72.222 2.24 0.17 0.00 4.45
1146 1343 2.361737 GCCACCCCTGCCTCTTTC 60.362 66.667 0.00 0.00 0.00 2.62
1147 1344 2.356667 CCACCCCTGCCTCTTTCC 59.643 66.667 0.00 0.00 0.00 3.13
1149 1346 2.211279 ACCCCTGCCTCTTTCCCT 59.789 61.111 0.00 0.00 0.00 4.20
1150 1347 1.925972 ACCCCTGCCTCTTTCCCTC 60.926 63.158 0.00 0.00 0.00 4.30
1151 1348 2.684499 CCCCTGCCTCTTTCCCTCC 61.684 68.421 0.00 0.00 0.00 4.30
1152 1349 2.586792 CCTGCCTCTTTCCCTCCG 59.413 66.667 0.00 0.00 0.00 4.63
1153 1350 2.586792 CTGCCTCTTTCCCTCCGG 59.413 66.667 0.00 0.00 0.00 5.14
1154 1351 1.990060 CTGCCTCTTTCCCTCCGGA 60.990 63.158 2.93 2.93 35.88 5.14
1155 1352 1.306997 TGCCTCTTTCCCTCCGGAT 60.307 57.895 3.57 0.00 38.24 4.18
1156 1353 1.338136 TGCCTCTTTCCCTCCGGATC 61.338 60.000 3.57 0.00 38.24 3.36
1158 1355 1.411651 CCTCTTTCCCTCCGGATCCC 61.412 65.000 3.57 0.00 38.24 3.85
1159 1356 1.384082 TCTTTCCCTCCGGATCCCC 60.384 63.158 3.57 0.00 38.24 4.81
1160 1357 1.692749 CTTTCCCTCCGGATCCCCA 60.693 63.158 3.57 0.00 38.24 4.96
1161 1358 1.230017 TTTCCCTCCGGATCCCCAA 60.230 57.895 3.57 0.00 38.24 4.12
1162 1359 1.568118 TTTCCCTCCGGATCCCCAAC 61.568 60.000 3.57 0.00 38.24 3.77
1163 1360 2.366972 CCCTCCGGATCCCCAACT 60.367 66.667 3.57 0.00 0.00 3.16
1164 1361 2.444256 CCCTCCGGATCCCCAACTC 61.444 68.421 3.57 0.00 0.00 3.01
1165 1362 1.689233 CCTCCGGATCCCCAACTCA 60.689 63.158 3.57 0.00 0.00 3.41
1166 1363 1.690219 CCTCCGGATCCCCAACTCAG 61.690 65.000 3.57 0.00 0.00 3.35
1167 1364 2.190578 CCGGATCCCCAACTCAGC 59.809 66.667 6.06 0.00 0.00 4.26
1169 1366 1.153289 CGGATCCCCAACTCAGCAG 60.153 63.158 6.06 0.00 0.00 4.24
1170 1367 1.452833 GGATCCCCAACTCAGCAGC 60.453 63.158 0.00 0.00 0.00 5.25
1171 1368 1.817099 GATCCCCAACTCAGCAGCG 60.817 63.158 0.00 0.00 0.00 5.18
1172 1369 3.984193 ATCCCCAACTCAGCAGCGC 62.984 63.158 0.00 0.00 0.00 5.92
1173 1370 4.711949 CCCCAACTCAGCAGCGCT 62.712 66.667 2.64 2.64 40.77 5.92
1174 1371 2.265739 CCCAACTCAGCAGCGCTA 59.734 61.111 10.99 0.00 36.40 4.26
1176 1373 0.745845 CCCAACTCAGCAGCGCTAAT 60.746 55.000 10.99 0.00 36.40 1.73
1178 1375 0.654683 CAACTCAGCAGCGCTAATCC 59.345 55.000 10.99 0.00 36.40 3.01
1184 1381 2.114670 GCAGCGCTAATCCTGCCAA 61.115 57.895 10.99 0.00 46.59 4.52
1185 1382 1.723870 CAGCGCTAATCCTGCCAAC 59.276 57.895 10.99 0.00 0.00 3.77
1186 1383 1.026182 CAGCGCTAATCCTGCCAACA 61.026 55.000 10.99 0.00 0.00 3.33
1188 1385 1.723870 CGCTAATCCTGCCAACAGC 59.276 57.895 0.00 0.00 43.02 4.40
1208 1405 2.202987 GGAGCAGCGACCTCCATG 60.203 66.667 13.33 0.00 46.51 3.66
1210 1407 4.479993 AGCAGCGACCTCCATGGC 62.480 66.667 6.96 0.00 40.22 4.40
1211 1408 4.783621 GCAGCGACCTCCATGGCA 62.784 66.667 6.96 0.00 40.22 4.92
1212 1409 2.046023 CAGCGACCTCCATGGCAA 60.046 61.111 6.96 0.00 40.22 4.52
1214 1411 1.452651 AGCGACCTCCATGGCAATG 60.453 57.895 6.96 0.00 40.22 2.82
1221 1418 2.440796 CCATGGCAATGGCGACCT 60.441 61.111 7.32 0.00 46.89 3.85
1222 1419 2.777972 CCATGGCAATGGCGACCTG 61.778 63.158 7.32 0.00 46.89 4.00
1224 1421 1.750399 ATGGCAATGGCGACCTGAC 60.750 57.895 1.51 0.00 42.47 3.51
1225 1422 2.045926 GGCAATGGCGACCTGACT 60.046 61.111 0.00 0.00 42.47 3.41
1226 1423 2.109126 GGCAATGGCGACCTGACTC 61.109 63.158 0.00 0.00 42.47 3.36
1228 1425 1.811266 CAATGGCGACCTGACTCGG 60.811 63.158 0.00 0.00 34.06 4.63
1231 1428 4.477975 GGCGACCTGACTCGGACG 62.478 72.222 0.00 0.00 43.37 4.79
1233 1430 4.477975 CGACCTGACTCGGACGCC 62.478 72.222 0.00 0.00 35.67 5.68
1236 1433 2.227089 GACCTGACTCGGACGCCATT 62.227 60.000 0.00 0.00 0.00 3.16
1237 1434 1.811266 CCTGACTCGGACGCCATTG 60.811 63.158 0.00 0.00 0.00 2.82
1238 1435 1.215382 CTGACTCGGACGCCATTGA 59.785 57.895 0.00 0.00 0.00 2.57
1239 1436 1.078759 CTGACTCGGACGCCATTGAC 61.079 60.000 0.00 0.00 0.00 3.18
1240 1437 2.126071 ACTCGGACGCCATTGACG 60.126 61.111 0.00 0.00 0.00 4.35
1241 1438 3.554692 CTCGGACGCCATTGACGC 61.555 66.667 0.00 0.00 0.00 5.19
1247 1444 4.812476 CGCCATTGACGCCCGAGA 62.812 66.667 0.00 0.00 0.00 4.04
1248 1445 3.195698 GCCATTGACGCCCGAGAC 61.196 66.667 0.00 0.00 0.00 3.36
1249 1446 2.264480 CCATTGACGCCCGAGACA 59.736 61.111 0.00 0.00 0.00 3.41
1251 1448 1.635663 CCATTGACGCCCGAGACAAC 61.636 60.000 0.00 0.00 0.00 3.32
1252 1449 0.948623 CATTGACGCCCGAGACAACA 60.949 55.000 0.00 0.00 0.00 3.33
1254 1451 3.112709 GACGCCCGAGACAACAGC 61.113 66.667 0.00 0.00 0.00 4.40
1259 1456 2.125912 CCGAGACAACAGCCGGAG 60.126 66.667 5.05 0.00 44.29 4.63
1260 1457 2.811317 CGAGACAACAGCCGGAGC 60.811 66.667 5.05 0.00 40.32 4.70
1261 1458 2.343758 GAGACAACAGCCGGAGCA 59.656 61.111 5.05 0.00 43.56 4.26
1262 1459 1.301716 GAGACAACAGCCGGAGCAA 60.302 57.895 5.05 0.00 43.56 3.91
1264 1461 2.281761 ACAACAGCCGGAGCAAGG 60.282 61.111 5.05 0.00 43.56 3.61
1266 1463 2.037136 CAACAGCCGGAGCAAGGAG 61.037 63.158 5.05 0.00 43.56 3.69
1267 1464 3.909086 AACAGCCGGAGCAAGGAGC 62.909 63.158 5.05 0.00 43.56 4.70
1276 1473 3.376918 GCAAGGAGCAGCAACCCC 61.377 66.667 0.00 0.00 44.79 4.95
1277 1474 2.115910 CAAGGAGCAGCAACCCCA 59.884 61.111 0.00 0.00 0.00 4.96
1278 1475 1.531365 CAAGGAGCAGCAACCCCAA 60.531 57.895 0.00 0.00 0.00 4.12
1279 1476 1.228675 AAGGAGCAGCAACCCCAAG 60.229 57.895 0.00 0.00 0.00 3.61
1280 1477 2.677875 GGAGCAGCAACCCCAAGG 60.678 66.667 0.00 0.00 40.04 3.61
1281 1478 3.376918 GAGCAGCAACCCCAAGGC 61.377 66.667 0.00 0.00 36.11 4.35
1285 1482 1.379044 CAGCAACCCCAAGGCCTAG 60.379 63.158 5.16 0.00 36.11 3.02
1298 1495 3.407967 CCTAGCCCCTCGCCCAAA 61.408 66.667 0.00 0.00 38.78 3.28
1299 1496 2.124695 CTAGCCCCTCGCCCAAAC 60.125 66.667 0.00 0.00 38.78 2.93
1300 1497 2.931105 TAGCCCCTCGCCCAAACA 60.931 61.111 0.00 0.00 38.78 2.83
1301 1498 2.270874 CTAGCCCCTCGCCCAAACAT 62.271 60.000 0.00 0.00 38.78 2.71
1302 1499 2.265467 TAGCCCCTCGCCCAAACATC 62.265 60.000 0.00 0.00 38.78 3.06
1304 1501 1.304052 CCCCTCGCCCAAACATCAA 60.304 57.895 0.00 0.00 0.00 2.57
1305 1502 1.315257 CCCCTCGCCCAAACATCAAG 61.315 60.000 0.00 0.00 0.00 3.02
1306 1503 1.315257 CCCTCGCCCAAACATCAAGG 61.315 60.000 0.00 0.00 0.00 3.61
1307 1504 0.609131 CCTCGCCCAAACATCAAGGT 60.609 55.000 0.00 0.00 0.00 3.50
1309 1506 0.109532 TCGCCCAAACATCAAGGTGA 59.890 50.000 0.00 0.00 36.58 4.02
1311 1508 0.244721 GCCCAAACATCAAGGTGAGC 59.755 55.000 0.00 0.00 0.00 4.26
1312 1509 1.619654 CCCAAACATCAAGGTGAGCA 58.380 50.000 0.00 0.00 0.00 4.26
1313 1510 1.270550 CCCAAACATCAAGGTGAGCAC 59.729 52.381 0.00 0.00 0.00 4.40
1328 1525 3.984838 GCACCCATTTGCTGAACAA 57.015 47.368 0.00 0.00 39.59 2.83
1339 1536 4.734398 TTGCTGAACAAAGATTTGGTGT 57.266 36.364 9.91 0.00 38.41 4.16
1340 1537 4.044336 TGCTGAACAAAGATTTGGTGTG 57.956 40.909 9.91 0.18 38.41 3.82
1341 1538 3.446873 TGCTGAACAAAGATTTGGTGTGT 59.553 39.130 9.91 0.00 38.41 3.72
1342 1539 4.642437 TGCTGAACAAAGATTTGGTGTGTA 59.358 37.500 9.91 0.00 38.41 2.90
1343 1540 4.976116 GCTGAACAAAGATTTGGTGTGTAC 59.024 41.667 9.91 0.00 38.41 2.90
1344 1541 9.704849 TTGCTGAACAAAGATTTGGTGTGTACC 62.705 40.741 9.91 0.00 38.41 3.34
1354 1551 2.172851 GGTGTGTACCGTTGATGGAA 57.827 50.000 0.00 0.00 37.19 3.53
1355 1552 2.496111 GGTGTGTACCGTTGATGGAAA 58.504 47.619 0.00 0.00 37.19 3.13
1356 1553 2.224784 GGTGTGTACCGTTGATGGAAAC 59.775 50.000 0.00 0.00 37.19 2.78
1358 1555 3.059188 GTGTGTACCGTTGATGGAAACTG 60.059 47.826 0.00 0.00 0.00 3.16
1359 1556 3.181464 TGTGTACCGTTGATGGAAACTGA 60.181 43.478 0.00 0.00 0.00 3.41
1360 1557 3.810941 GTGTACCGTTGATGGAAACTGAA 59.189 43.478 0.00 0.00 0.00 3.02
1362 1559 5.048991 GTGTACCGTTGATGGAAACTGAATT 60.049 40.000 0.00 0.00 0.00 2.17
1363 1560 4.766404 ACCGTTGATGGAAACTGAATTC 57.234 40.909 0.00 0.00 0.00 2.17
1364 1561 4.398319 ACCGTTGATGGAAACTGAATTCT 58.602 39.130 7.05 0.00 0.00 2.40
1365 1562 4.827284 ACCGTTGATGGAAACTGAATTCTT 59.173 37.500 7.05 0.00 0.00 2.52
1367 1564 6.183360 ACCGTTGATGGAAACTGAATTCTTTT 60.183 34.615 7.05 6.20 0.00 2.27
1369 1566 6.697019 CGTTGATGGAAACTGAATTCTTTTGT 59.303 34.615 7.05 0.00 0.00 2.83
1370 1567 7.306167 CGTTGATGGAAACTGAATTCTTTTGTG 60.306 37.037 7.05 0.00 0.00 3.33
1372 1569 5.336150 TGGAAACTGAATTCTTTTGTGCA 57.664 34.783 7.05 0.00 0.00 4.57
1373 1570 5.350633 TGGAAACTGAATTCTTTTGTGCAG 58.649 37.500 7.05 0.00 0.00 4.41
1374 1571 5.105392 TGGAAACTGAATTCTTTTGTGCAGT 60.105 36.000 7.05 0.00 38.14 4.40
1376 1573 4.989279 ACTGAATTCTTTTGTGCAGTGT 57.011 36.364 7.05 0.00 35.49 3.55
1378 1575 5.821204 ACTGAATTCTTTTGTGCAGTGTAC 58.179 37.500 7.05 4.15 35.49 2.90
1379 1576 4.843147 TGAATTCTTTTGTGCAGTGTACG 58.157 39.130 7.05 0.00 0.00 3.67
1380 1577 4.334203 TGAATTCTTTTGTGCAGTGTACGT 59.666 37.500 7.05 0.00 0.00 3.57
1381 1578 3.666883 TTCTTTTGTGCAGTGTACGTG 57.333 42.857 6.88 0.00 0.00 4.49
1382 1579 2.623535 TCTTTTGTGCAGTGTACGTGT 58.376 42.857 6.88 0.00 0.00 4.49
1383 1580 3.783191 TCTTTTGTGCAGTGTACGTGTA 58.217 40.909 6.88 0.00 0.00 2.90
1386 1583 2.128367 TGTGCAGTGTACGTGTACTG 57.872 50.000 22.30 22.30 45.40 2.74
1393 1590 4.343609 CAGTGTACGTGTACTGCTATCTG 58.656 47.826 17.33 6.66 38.01 2.90
1394 1591 3.106672 GTGTACGTGTACTGCTATCTGC 58.893 50.000 11.14 0.00 37.00 4.26
1395 1592 3.014623 TGTACGTGTACTGCTATCTGCT 58.985 45.455 11.14 0.00 36.99 4.24
1396 1593 4.034858 GTGTACGTGTACTGCTATCTGCTA 59.965 45.833 11.14 0.00 36.99 3.49
1397 1594 4.637091 TGTACGTGTACTGCTATCTGCTAA 59.363 41.667 11.14 0.00 36.99 3.09
1400 1597 4.580995 ACGTGTACTGCTATCTGCTAAGAT 59.419 41.667 0.00 0.00 45.42 2.40
1401 1598 5.763698 ACGTGTACTGCTATCTGCTAAGATA 59.236 40.000 0.00 0.00 41.57 1.98
1403 1600 7.040340 ACGTGTACTGCTATCTGCTAAGATATT 60.040 37.037 0.00 0.00 43.07 1.28
1404 1601 8.451748 CGTGTACTGCTATCTGCTAAGATATTA 58.548 37.037 0.00 0.00 43.07 0.98
1405 1602 9.781834 GTGTACTGCTATCTGCTAAGATATTAG 57.218 37.037 2.62 2.62 43.07 1.73
1406 1603 9.521841 TGTACTGCTATCTGCTAAGATATTAGT 57.478 33.333 8.80 12.62 43.07 2.24
1409 1606 8.865090 ACTGCTATCTGCTAAGATATTAGTTGT 58.135 33.333 8.80 0.00 43.07 3.32
1429 1626 7.548097 AGTTGTATGAACTAGTACATGTGAGG 58.452 38.462 9.11 0.00 31.48 3.86
1431 1628 7.898014 TGTATGAACTAGTACATGTGAGGAT 57.102 36.000 9.11 0.00 0.00 3.24
1433 1630 5.598416 TGAACTAGTACATGTGAGGATGG 57.402 43.478 9.11 0.00 0.00 3.51
1437 1634 2.457598 AGTACATGTGAGGATGGACGT 58.542 47.619 9.11 0.00 41.47 4.34
1439 1636 4.021229 AGTACATGTGAGGATGGACGTAA 58.979 43.478 9.11 0.00 41.47 3.18
1440 1637 4.649674 AGTACATGTGAGGATGGACGTAAT 59.350 41.667 9.11 0.00 41.47 1.89
1441 1638 4.487714 ACATGTGAGGATGGACGTAATT 57.512 40.909 0.00 0.00 0.00 1.40
1443 1640 4.635765 ACATGTGAGGATGGACGTAATTTG 59.364 41.667 0.00 0.00 0.00 2.32
1444 1641 4.280436 TGTGAGGATGGACGTAATTTGT 57.720 40.909 0.00 0.00 0.00 2.83
1448 1645 4.935205 TGAGGATGGACGTAATTTGTTCAG 59.065 41.667 0.00 0.00 0.00 3.02
1450 1647 4.695455 AGGATGGACGTAATTTGTTCAGTG 59.305 41.667 0.00 0.00 0.00 3.66
1451 1648 4.454504 GGATGGACGTAATTTGTTCAGTGT 59.545 41.667 0.00 0.00 0.00 3.55
1452 1649 5.640357 GGATGGACGTAATTTGTTCAGTGTA 59.360 40.000 0.00 0.00 0.00 2.90
1453 1650 6.183360 GGATGGACGTAATTTGTTCAGTGTAG 60.183 42.308 0.00 0.00 0.00 2.74
1455 1652 6.747125 TGGACGTAATTTGTTCAGTGTAGTA 58.253 36.000 0.00 0.00 0.00 1.82
1456 1653 7.380536 TGGACGTAATTTGTTCAGTGTAGTAT 58.619 34.615 0.00 0.00 0.00 2.12
1457 1654 7.329962 TGGACGTAATTTGTTCAGTGTAGTATG 59.670 37.037 0.00 0.00 0.00 2.39
1458 1655 7.330208 GGACGTAATTTGTTCAGTGTAGTATGT 59.670 37.037 0.00 0.00 0.00 2.29
1459 1656 9.345517 GACGTAATTTGTTCAGTGTAGTATGTA 57.654 33.333 0.00 0.00 0.00 2.29
1460 1657 9.350357 ACGTAATTTGTTCAGTGTAGTATGTAG 57.650 33.333 0.00 0.00 0.00 2.74
1461 1658 9.350357 CGTAATTTGTTCAGTGTAGTATGTAGT 57.650 33.333 0.00 0.00 0.00 2.73
1466 1663 6.849502 TGTTCAGTGTAGTATGTAGTACTGC 58.150 40.000 5.39 4.49 43.44 4.40
1467 1664 6.657966 TGTTCAGTGTAGTATGTAGTACTGCT 59.342 38.462 12.42 0.90 43.83 4.24
1469 1666 8.838365 GTTCAGTGTAGTATGTAGTACTGCTAT 58.162 37.037 12.42 6.79 43.83 2.97
1470 1667 8.379457 TCAGTGTAGTATGTAGTACTGCTATG 57.621 38.462 12.42 4.39 43.83 2.23
1471 1668 8.208903 TCAGTGTAGTATGTAGTACTGCTATGA 58.791 37.037 12.42 6.12 43.83 2.15
1472 1669 9.004717 CAGTGTAGTATGTAGTACTGCTATGAT 57.995 37.037 12.42 0.02 43.83 2.45
1473 1670 9.575868 AGTGTAGTATGTAGTACTGCTATGATT 57.424 33.333 12.42 0.00 43.83 2.57
1495 1692 5.553290 TTTGGTTTTGCAAAAGTTTAGCC 57.447 34.783 24.46 19.71 0.00 3.93
1496 1693 4.207891 TGGTTTTGCAAAAGTTTAGCCA 57.792 36.364 24.46 21.86 0.00 4.75
1497 1694 4.579869 TGGTTTTGCAAAAGTTTAGCCAA 58.420 34.783 24.46 9.22 0.00 4.52
1498 1695 5.189180 TGGTTTTGCAAAAGTTTAGCCAAT 58.811 33.333 24.46 0.00 0.00 3.16
1521 1718 3.418684 ACCAACACTCTGTATCAACCC 57.581 47.619 0.00 0.00 0.00 4.11
1528 1725 0.323302 TCTGTATCAACCCGCAGCAA 59.677 50.000 0.00 0.00 0.00 3.91
1882 2087 2.031012 TCGCACAGAGCCTGTTGG 59.969 61.111 5.24 1.83 42.59 3.77
2007 2325 5.840243 TGTTTGATGGAATGCCTATCAAG 57.160 39.130 13.90 0.00 40.00 3.02
2080 2457 4.094442 GGATTTACTTTCTAGTTGGTGCGG 59.906 45.833 0.00 0.00 35.78 5.69
2152 2530 3.006003 TGGCACAGTAGTCGTTCATGTTA 59.994 43.478 0.00 0.00 0.00 2.41
2259 5827 3.013648 AGTTATTCCACAGGGTCTAGGGA 59.986 47.826 0.00 0.00 34.93 4.20
2260 5828 2.897823 ATTCCACAGGGTCTAGGGAT 57.102 50.000 0.00 0.00 34.93 3.85
2261 5829 1.879575 TTCCACAGGGTCTAGGGATG 58.120 55.000 0.00 0.00 34.93 3.51
2402 5977 1.967319 TCCAAAACAGGAGTCAGCAC 58.033 50.000 0.00 0.00 32.77 4.40
2472 6047 7.544915 ACCGAGTATTAAAGCTTCTCTTGTTAC 59.455 37.037 0.00 0.00 34.67 2.50
2578 6154 4.657814 AAAGGTGACAGGTATGTTCCAT 57.342 40.909 6.41 0.00 40.68 3.41
2882 6493 5.800296 TCAGGAATTTCCTCGTGTGAAATA 58.200 37.500 15.24 0.00 45.66 1.40
2910 6521 7.782049 ACAGACAGTGCTAATGTATAGCTTAA 58.218 34.615 8.73 0.00 40.95 1.85
2976 6587 6.645003 GGGACTGTTATTTTTGAATTGTGTCC 59.355 38.462 0.00 0.00 38.53 4.02
2983 6594 3.347958 TTTGAATTGTGTCCGAGTTGC 57.652 42.857 0.00 0.00 0.00 4.17
3158 6830 7.661437 AGCTTAGTTGATTCATGTCAGTTGTAA 59.339 33.333 0.00 0.00 0.00 2.41
3574 7629 8.107095 TCCAGAGGCTGTGTAAATATTTTACTT 58.893 33.333 11.04 0.00 0.00 2.24
3575 7630 9.391006 CCAGAGGCTGTGTAAATATTTTACTTA 57.609 33.333 11.04 0.00 0.00 2.24
3909 7964 1.734655 TCTCAGACAAAGAGGCCCTT 58.265 50.000 0.00 0.00 36.47 3.95
3977 8032 4.451150 GGAGGCGCGGATGTCACA 62.451 66.667 8.83 0.00 0.00 3.58
4180 8244 5.438761 AACACTAATGCTCAAAAGGTGAC 57.561 39.130 0.00 0.00 31.13 3.67
4629 8739 4.482025 TGGACCATCATTTTCCCTCCTAAT 59.518 41.667 0.00 0.00 0.00 1.73
4643 8755 3.005897 CCTCCTAATGTATGCTGTAGCGT 59.994 47.826 3.83 3.83 45.83 5.07
4670 8782 6.427242 CAGGAGATGACATCTTGATTATGTGG 59.573 42.308 18.89 0.00 40.38 4.17
4750 8864 7.816995 TGCTGCAAATTTAACTTAAATACCAGG 59.183 33.333 18.59 0.00 37.39 4.45
4753 8867 7.030768 GCAAATTTAACTTAAATACCAGGCGA 58.969 34.615 7.11 0.00 37.39 5.54
4816 8933 4.500035 GCATTTCTACTTCCTCCGTCTAGG 60.500 50.000 0.00 0.00 42.97 3.02
4829 8946 5.108187 TCCGTCTAGGTGTATAAGTCACT 57.892 43.478 0.00 0.00 41.99 3.41
4833 8950 7.776969 TCCGTCTAGGTGTATAAGTCACTTTAT 59.223 37.037 0.00 0.00 41.99 1.40
4866 8983 7.908193 AATACTTTCAAAACACTTAGTTGCG 57.092 32.000 0.00 0.00 41.19 4.85
4875 8992 2.742053 ACACTTAGTTGCGGTGCATTAG 59.258 45.455 0.00 0.00 38.76 1.73
4879 8996 2.185004 AGTTGCGGTGCATTAGTTCT 57.815 45.000 0.00 0.00 38.76 3.01
4880 8997 2.504367 AGTTGCGGTGCATTAGTTCTT 58.496 42.857 0.00 0.00 38.76 2.52
4886 9003 2.858344 CGGTGCATTAGTTCTTACCTCG 59.142 50.000 0.00 0.00 0.00 4.63
4900 9017 8.895737 AGTTCTTACCTCGTTTATTGTTTTTGA 58.104 29.630 0.00 0.00 0.00 2.69
4906 9023 7.138736 ACCTCGTTTATTGTTTTTGACATGAG 58.861 34.615 0.00 0.00 38.26 2.90
4917 9034 8.231692 TGTTTTTGACATGAGTAAAGGAATCA 57.768 30.769 0.00 0.00 32.00 2.57
4928 9045 9.753674 ATGAGTAAAGGAATCAACCAATAAGAA 57.246 29.630 0.00 0.00 0.00 2.52
4935 9052 5.714806 GGAATCAACCAATAAGAAAGGTGGA 59.285 40.000 0.00 0.00 39.58 4.02
4944 9061 6.094048 CCAATAAGAAAGGTGGAGTGTGTATG 59.906 42.308 0.00 0.00 32.54 2.39
4949 9066 3.059352 AGGTGGAGTGTGTATGCTTTC 57.941 47.619 0.00 0.00 0.00 2.62
4954 9071 3.758023 TGGAGTGTGTATGCTTTCAATGG 59.242 43.478 0.00 0.00 0.00 3.16
4962 9099 0.320073 TGCTTTCAATGGCTTGCAGC 60.320 50.000 0.11 0.11 41.46 5.25
4965 9102 2.768503 TTTCAATGGCTTGCAGCGGC 62.769 55.000 0.31 0.31 43.62 6.53
4979 9116 1.064505 CAGCGGCCAGTTCATTACATG 59.935 52.381 2.24 0.00 0.00 3.21
4981 9118 1.093972 CGGCCAGTTCATTACATGCA 58.906 50.000 2.24 0.00 0.00 3.96
5049 9186 2.331451 GTCTTGGTTGCGGTGCAC 59.669 61.111 8.80 8.80 38.71 4.57
5171 9370 0.815734 GCTGTCATTCTGCCTGCATT 59.184 50.000 0.00 0.00 35.43 3.56
5670 10291 2.166254 ACAAAGGGAACAACAAGCACAG 59.834 45.455 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
193 390 3.210098 AGGGTTAGGGTTTACTGCCTA 57.790 47.619 0.00 0.00 0.00 3.93
308 505 0.109319 GATGGCGCGAATTTGGTTGT 60.109 50.000 12.10 0.00 0.00 3.32
511 708 4.400251 CCTCCTCTCCCCCGTGGT 62.400 72.222 0.00 0.00 34.77 4.16
563 760 0.179108 GGATCGAACTGCTTAGGCGT 60.179 55.000 0.00 0.00 42.25 5.68
955 1152 3.697747 TTCTGTACCCGGGCCGTG 61.698 66.667 26.32 17.42 0.00 4.94
956 1153 3.698820 GTTCTGTACCCGGGCCGT 61.699 66.667 26.32 10.07 0.00 5.68
957 1154 4.462280 GGTTCTGTACCCGGGCCG 62.462 72.222 24.08 21.46 41.43 6.13
958 1155 4.462280 CGGTTCTGTACCCGGGCC 62.462 72.222 24.08 12.79 44.70 5.80
959 1156 3.366739 CTCGGTTCTGTACCCGGGC 62.367 68.421 24.08 5.60 44.70 6.13
960 1157 2.890371 CTCGGTTCTGTACCCGGG 59.110 66.667 22.25 22.25 44.70 5.73
961 1158 2.183555 GCTCGGTTCTGTACCCGG 59.816 66.667 8.20 0.00 44.70 5.73
962 1159 2.202570 CGCTCGGTTCTGTACCCG 60.203 66.667 2.22 2.22 44.70 5.28
963 1160 1.139095 CTCGCTCGGTTCTGTACCC 59.861 63.158 0.00 0.00 44.70 3.69
964 1161 1.516603 GCTCGCTCGGTTCTGTACC 60.517 63.158 0.00 0.00 44.03 3.34
965 1162 1.516603 GGCTCGCTCGGTTCTGTAC 60.517 63.158 0.00 0.00 0.00 2.90
966 1163 2.707849 GGGCTCGCTCGGTTCTGTA 61.708 63.158 0.00 0.00 0.00 2.74
967 1164 4.070552 GGGCTCGCTCGGTTCTGT 62.071 66.667 0.00 0.00 0.00 3.41
968 1165 4.821589 GGGGCTCGCTCGGTTCTG 62.822 72.222 0.00 0.00 0.00 3.02
986 1183 0.386113 GGGAACGATTCGAGAGAGGG 59.614 60.000 13.95 0.00 43.69 4.30
987 1184 0.386113 GGGGAACGATTCGAGAGAGG 59.614 60.000 13.95 0.00 43.69 3.69
988 1185 1.066303 CAGGGGAACGATTCGAGAGAG 59.934 57.143 13.95 0.00 43.69 3.20
989 1186 1.103803 CAGGGGAACGATTCGAGAGA 58.896 55.000 13.95 0.00 39.20 3.10
990 1187 0.818296 ACAGGGGAACGATTCGAGAG 59.182 55.000 13.95 0.00 0.00 3.20
992 1189 1.749634 AGTACAGGGGAACGATTCGAG 59.250 52.381 13.95 0.00 0.00 4.04
994 1191 1.202382 GGAGTACAGGGGAACGATTCG 60.202 57.143 4.14 4.14 0.00 3.34
997 1194 2.108970 GAAGGAGTACAGGGGAACGAT 58.891 52.381 0.00 0.00 0.00 3.73
999 1196 0.172803 CGAAGGAGTACAGGGGAACG 59.827 60.000 0.00 0.00 0.00 3.95
1001 1198 0.252103 AGCGAAGGAGTACAGGGGAA 60.252 55.000 0.00 0.00 0.00 3.97
1003 1200 1.817209 GAGCGAAGGAGTACAGGGG 59.183 63.158 0.00 0.00 0.00 4.79
1004 1201 1.313812 ACGAGCGAAGGAGTACAGGG 61.314 60.000 0.00 0.00 0.00 4.45
1005 1202 1.063764 GTACGAGCGAAGGAGTACAGG 59.936 57.143 0.00 0.00 39.22 4.00
1006 1203 1.736126 TGTACGAGCGAAGGAGTACAG 59.264 52.381 3.53 0.00 42.80 2.74
1007 1204 1.466167 GTGTACGAGCGAAGGAGTACA 59.534 52.381 3.53 3.53 44.64 2.90
1008 1205 1.202121 GGTGTACGAGCGAAGGAGTAC 60.202 57.143 0.00 0.00 39.68 2.73
1011 1208 1.139095 GGGTGTACGAGCGAAGGAG 59.861 63.158 0.00 0.00 0.00 3.69
1012 1209 2.693762 CGGGTGTACGAGCGAAGGA 61.694 63.158 0.00 0.00 35.47 3.36
1014 1211 2.879462 GCGGGTGTACGAGCGAAG 60.879 66.667 0.00 0.00 35.47 3.79
1015 1212 3.210223 TTGCGGGTGTACGAGCGAA 62.210 57.895 0.00 0.00 35.47 4.70
1017 1214 3.475774 GTTGCGGGTGTACGAGCG 61.476 66.667 0.00 0.00 35.47 5.03
1018 1215 2.048503 AGTTGCGGGTGTACGAGC 60.049 61.111 0.00 0.00 35.47 5.03
1019 1216 1.445582 GGAGTTGCGGGTGTACGAG 60.446 63.158 0.00 0.00 35.47 4.18
1022 1219 1.079336 GAGGGAGTTGCGGGTGTAC 60.079 63.158 0.00 0.00 0.00 2.90
1023 1220 1.534476 TGAGGGAGTTGCGGGTGTA 60.534 57.895 0.00 0.00 0.00 2.90
1024 1221 2.847234 TGAGGGAGTTGCGGGTGT 60.847 61.111 0.00 0.00 0.00 4.16
1025 1222 2.358737 GTGAGGGAGTTGCGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
1027 1224 3.234630 TTCGTGAGGGAGTTGCGGG 62.235 63.158 0.00 0.00 0.00 6.13
1029 1226 2.027625 GGTTCGTGAGGGAGTTGCG 61.028 63.158 0.00 0.00 0.00 4.85
1030 1227 1.671379 GGGTTCGTGAGGGAGTTGC 60.671 63.158 0.00 0.00 0.00 4.17
1031 1228 0.037232 GAGGGTTCGTGAGGGAGTTG 60.037 60.000 0.00 0.00 0.00 3.16
1032 1229 0.471211 TGAGGGTTCGTGAGGGAGTT 60.471 55.000 0.00 0.00 0.00 3.01
1033 1230 0.471211 TTGAGGGTTCGTGAGGGAGT 60.471 55.000 0.00 0.00 0.00 3.85
1034 1231 0.037232 GTTGAGGGTTCGTGAGGGAG 60.037 60.000 0.00 0.00 0.00 4.30
1035 1232 1.812686 CGTTGAGGGTTCGTGAGGGA 61.813 60.000 0.00 0.00 0.00 4.20
1036 1233 1.374252 CGTTGAGGGTTCGTGAGGG 60.374 63.158 0.00 0.00 0.00 4.30
1037 1234 2.027625 GCGTTGAGGGTTCGTGAGG 61.028 63.158 0.00 0.00 0.00 3.86
1038 1235 2.027625 GGCGTTGAGGGTTCGTGAG 61.028 63.158 0.00 0.00 0.00 3.51
1040 1237 3.411351 CGGCGTTGAGGGTTCGTG 61.411 66.667 0.00 0.00 0.00 4.35
1077 1274 4.208686 GACGAGGGGTAGCAGGCG 62.209 72.222 0.00 0.00 0.00 5.52
1078 1275 4.208686 CGACGAGGGGTAGCAGGC 62.209 72.222 0.00 0.00 0.00 4.85
1079 1276 4.208686 GCGACGAGGGGTAGCAGG 62.209 72.222 0.00 0.00 45.42 4.85
1093 1290 4.501285 AGAGGATCCGACCGGCGA 62.501 66.667 17.96 4.46 44.57 5.54
1094 1291 3.967335 GAGAGGATCCGACCGGCG 61.967 72.222 5.98 6.30 40.47 6.46
1095 1292 3.607661 GGAGAGGATCCGACCGGC 61.608 72.222 5.98 0.00 38.67 6.13
1103 1300 1.906333 GGAGGCGGAGGAGAGGATC 60.906 68.421 0.00 0.00 0.00 3.36
1104 1301 2.200092 GGAGGCGGAGGAGAGGAT 59.800 66.667 0.00 0.00 0.00 3.24
1106 1303 2.655077 ATCTGGAGGCGGAGGAGAGG 62.655 65.000 0.00 0.00 0.00 3.69
1107 1304 1.152567 ATCTGGAGGCGGAGGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
1108 1305 1.152652 GATCTGGAGGCGGAGGAGA 60.153 63.158 0.00 0.00 0.00 3.71
1109 1306 2.206536 GGATCTGGAGGCGGAGGAG 61.207 68.421 0.00 0.00 0.00 3.69
1111 1308 3.610669 CGGATCTGGAGGCGGAGG 61.611 72.222 0.00 0.00 0.00 4.30
1112 1309 3.610669 CCGGATCTGGAGGCGGAG 61.611 72.222 16.28 0.00 0.00 4.63
1117 1314 3.866582 GGTGGCCGGATCTGGAGG 61.867 72.222 25.54 8.59 0.00 4.30
1121 1318 4.181010 CAGGGGTGGCCGGATCTG 62.181 72.222 5.05 0.00 0.00 2.90
1129 1326 2.361737 GAAAGAGGCAGGGGTGGC 60.362 66.667 0.00 0.00 0.00 5.01
1130 1327 2.356667 GGAAAGAGGCAGGGGTGG 59.643 66.667 0.00 0.00 0.00 4.61
1131 1328 2.203549 GAGGGAAAGAGGCAGGGGTG 62.204 65.000 0.00 0.00 0.00 4.61
1133 1330 2.684499 GGAGGGAAAGAGGCAGGGG 61.684 68.421 0.00 0.00 0.00 4.79
1134 1331 3.002371 GGAGGGAAAGAGGCAGGG 58.998 66.667 0.00 0.00 0.00 4.45
1135 1332 2.586792 CGGAGGGAAAGAGGCAGG 59.413 66.667 0.00 0.00 0.00 4.85
1149 1346 2.367202 GCTGAGTTGGGGATCCGGA 61.367 63.158 6.61 6.61 35.24 5.14
1150 1347 2.190578 GCTGAGTTGGGGATCCGG 59.809 66.667 5.45 0.00 35.24 5.14
1151 1348 1.153289 CTGCTGAGTTGGGGATCCG 60.153 63.158 5.45 0.00 35.24 4.18
1152 1349 1.452833 GCTGCTGAGTTGGGGATCC 60.453 63.158 1.92 1.92 0.00 3.36
1153 1350 1.817099 CGCTGCTGAGTTGGGGATC 60.817 63.158 0.00 0.00 0.00 3.36
1154 1351 2.270205 CGCTGCTGAGTTGGGGAT 59.730 61.111 0.00 0.00 0.00 3.85
1155 1352 4.704833 GCGCTGCTGAGTTGGGGA 62.705 66.667 0.00 0.00 0.00 4.81
1156 1353 2.803155 TTAGCGCTGCTGAGTTGGGG 62.803 60.000 22.90 0.00 40.10 4.96
1158 1355 0.654683 GATTAGCGCTGCTGAGTTGG 59.345 55.000 22.90 0.00 40.10 3.77
1159 1356 0.654683 GGATTAGCGCTGCTGAGTTG 59.345 55.000 22.90 0.00 40.10 3.16
1160 1357 0.539051 AGGATTAGCGCTGCTGAGTT 59.461 50.000 22.90 0.00 40.10 3.01
1161 1358 0.179089 CAGGATTAGCGCTGCTGAGT 60.179 55.000 22.90 0.00 40.10 3.41
1162 1359 1.497223 GCAGGATTAGCGCTGCTGAG 61.497 60.000 22.90 6.70 40.10 3.35
1163 1360 1.522355 GCAGGATTAGCGCTGCTGA 60.522 57.895 22.90 3.37 40.10 4.26
1164 1361 2.541120 GGCAGGATTAGCGCTGCTG 61.541 63.158 22.90 16.32 40.10 4.41
1165 1362 2.203126 GGCAGGATTAGCGCTGCT 60.203 61.111 22.90 6.73 43.41 4.24
1166 1363 2.114670 TTGGCAGGATTAGCGCTGC 61.115 57.895 22.90 14.81 38.96 5.25
1167 1364 1.026182 TGTTGGCAGGATTAGCGCTG 61.026 55.000 22.90 3.47 0.00 5.18
1169 1366 1.723870 CTGTTGGCAGGATTAGCGC 59.276 57.895 0.00 0.00 39.01 5.92
1170 1367 1.723870 GCTGTTGGCAGGATTAGCG 59.276 57.895 0.00 0.00 42.78 4.26
1181 1378 2.960170 GCTGCTCCTTGCTGTTGG 59.040 61.111 0.00 0.00 43.37 3.77
1184 1381 2.358003 GTCGCTGCTCCTTGCTGT 60.358 61.111 0.00 0.00 43.37 4.40
1185 1382 3.123620 GGTCGCTGCTCCTTGCTG 61.124 66.667 0.00 0.00 43.37 4.41
1186 1383 3.308014 GAGGTCGCTGCTCCTTGCT 62.308 63.158 12.94 0.00 43.37 3.91
1188 1385 2.125350 GGAGGTCGCTGCTCCTTG 60.125 66.667 12.94 0.00 33.83 3.61
1189 1386 1.992277 ATGGAGGTCGCTGCTCCTT 60.992 57.895 12.94 2.29 38.07 3.36
1190 1387 2.364842 ATGGAGGTCGCTGCTCCT 60.365 61.111 11.86 11.86 38.07 3.69
1191 1388 2.202987 CATGGAGGTCGCTGCTCC 60.203 66.667 0.00 0.00 37.75 4.70
1192 1389 2.202987 CCATGGAGGTCGCTGCTC 60.203 66.667 5.56 0.00 0.00 4.26
1194 1391 4.783621 TGCCATGGAGGTCGCTGC 62.784 66.667 18.40 0.00 40.61 5.25
1195 1392 1.452651 ATTGCCATGGAGGTCGCTG 60.453 57.895 18.40 0.00 40.61 5.18
1197 1394 3.113745 CATTGCCATGGAGGTCGC 58.886 61.111 18.40 0.00 40.61 5.19
1205 1402 1.750018 TCAGGTCGCCATTGCCATG 60.750 57.895 0.00 0.00 0.00 3.66
1208 1405 2.045926 AGTCAGGTCGCCATTGCC 60.046 61.111 0.00 0.00 0.00 4.52
1210 1407 1.811266 CCGAGTCAGGTCGCCATTG 60.811 63.158 0.00 0.00 38.69 2.82
1211 1408 1.982395 TCCGAGTCAGGTCGCCATT 60.982 57.895 0.00 0.00 38.69 3.16
1212 1409 2.362503 TCCGAGTCAGGTCGCCAT 60.363 61.111 0.00 0.00 38.69 4.40
1214 1411 4.477975 CGTCCGAGTCAGGTCGCC 62.478 72.222 7.43 0.00 38.69 5.54
1216 1413 4.477975 GGCGTCCGAGTCAGGTCG 62.478 72.222 13.17 13.17 43.70 4.79
1217 1414 2.227089 AATGGCGTCCGAGTCAGGTC 62.227 60.000 0.00 0.00 0.00 3.85
1218 1415 2.283529 AATGGCGTCCGAGTCAGGT 61.284 57.895 0.00 0.00 0.00 4.00
1220 1417 1.078759 GTCAATGGCGTCCGAGTCAG 61.079 60.000 0.00 0.00 0.00 3.51
1221 1418 1.080093 GTCAATGGCGTCCGAGTCA 60.080 57.895 0.00 0.00 0.00 3.41
1222 1419 2.158959 CGTCAATGGCGTCCGAGTC 61.159 63.158 0.00 0.00 0.00 3.36
1224 1421 3.554692 GCGTCAATGGCGTCCGAG 61.555 66.667 9.55 0.00 0.00 4.63
1231 1428 3.195698 GTCTCGGGCGTCAATGGC 61.196 66.667 0.00 0.00 0.00 4.40
1232 1429 1.375396 TTGTCTCGGGCGTCAATGG 60.375 57.895 0.00 0.00 0.00 3.16
1233 1430 0.948623 TGTTGTCTCGGGCGTCAATG 60.949 55.000 0.00 0.00 0.00 2.82
1236 1433 2.338620 CTGTTGTCTCGGGCGTCA 59.661 61.111 0.00 0.00 0.00 4.35
1237 1434 3.112709 GCTGTTGTCTCGGGCGTC 61.113 66.667 0.00 0.00 0.00 5.19
1238 1435 4.681978 GGCTGTTGTCTCGGGCGT 62.682 66.667 0.00 0.00 0.00 5.68
1241 1438 3.649277 CTCCGGCTGTTGTCTCGGG 62.649 68.421 0.00 0.00 42.44 5.14
1243 1440 2.811317 GCTCCGGCTGTTGTCTCG 60.811 66.667 0.00 0.00 35.22 4.04
1246 1443 2.328099 CCTTGCTCCGGCTGTTGTC 61.328 63.158 0.00 0.00 39.59 3.18
1247 1444 2.281761 CCTTGCTCCGGCTGTTGT 60.282 61.111 0.00 0.00 39.59 3.32
1248 1445 2.032528 TCCTTGCTCCGGCTGTTG 59.967 61.111 0.00 0.00 39.59 3.33
1249 1446 2.348998 CTCCTTGCTCCGGCTGTT 59.651 61.111 0.00 0.00 39.59 3.16
1251 1448 4.399395 TGCTCCTTGCTCCGGCTG 62.399 66.667 0.00 0.00 43.37 4.85
1252 1449 4.093291 CTGCTCCTTGCTCCGGCT 62.093 66.667 0.00 0.00 43.37 5.52
1254 1451 3.907260 TTGCTGCTCCTTGCTCCGG 62.907 63.158 0.00 0.00 43.37 5.14
1256 1453 2.338785 GGTTGCTGCTCCTTGCTCC 61.339 63.158 0.00 0.00 43.37 4.70
1257 1454 2.338785 GGGTTGCTGCTCCTTGCTC 61.339 63.158 0.00 0.00 43.37 4.26
1259 1456 3.376918 GGGGTTGCTGCTCCTTGC 61.377 66.667 0.00 0.00 43.25 4.01
1260 1457 1.530013 CTTGGGGTTGCTGCTCCTTG 61.530 60.000 0.00 0.00 0.00 3.61
1261 1458 1.228675 CTTGGGGTTGCTGCTCCTT 60.229 57.895 0.00 0.00 0.00 3.36
1262 1459 2.437897 CTTGGGGTTGCTGCTCCT 59.562 61.111 0.00 0.00 0.00 3.69
1264 1461 3.376918 GCCTTGGGGTTGCTGCTC 61.377 66.667 0.00 0.00 34.45 4.26
1266 1463 3.583882 TAGGCCTTGGGGTTGCTGC 62.584 63.158 12.58 0.00 34.45 5.25
1267 1464 1.379044 CTAGGCCTTGGGGTTGCTG 60.379 63.158 12.58 0.00 34.45 4.41
1268 1465 3.090765 CTAGGCCTTGGGGTTGCT 58.909 61.111 12.58 0.00 34.45 3.91
1269 1466 2.755876 GCTAGGCCTTGGGGTTGC 60.756 66.667 12.58 0.54 34.45 4.17
1270 1467 2.043953 GGCTAGGCCTTGGGGTTG 60.044 66.667 12.58 0.00 46.69 3.77
1281 1478 3.407967 TTTGGGCGAGGGGCTAGG 61.408 66.667 0.00 0.00 42.94 3.02
1282 1479 2.124695 GTTTGGGCGAGGGGCTAG 60.125 66.667 0.00 0.00 42.94 3.42
1283 1480 2.265467 GATGTTTGGGCGAGGGGCTA 62.265 60.000 0.00 0.00 42.94 3.93
1285 1482 3.140814 GATGTTTGGGCGAGGGGC 61.141 66.667 0.00 0.00 42.51 5.80
1287 1484 1.315257 CCTTGATGTTTGGGCGAGGG 61.315 60.000 0.00 0.00 30.89 4.30
1288 1485 0.609131 ACCTTGATGTTTGGGCGAGG 60.609 55.000 0.00 0.00 38.82 4.63
1290 1487 0.109532 TCACCTTGATGTTTGGGCGA 59.890 50.000 0.00 0.00 0.00 5.54
1294 1491 2.712057 GTGCTCACCTTGATGTTTGG 57.288 50.000 0.00 0.00 0.00 3.28
1311 1508 3.731652 TCTTTGTTCAGCAAATGGGTG 57.268 42.857 0.00 0.00 45.00 4.61
1312 1509 4.961438 AATCTTTGTTCAGCAAATGGGT 57.039 36.364 0.00 0.00 45.00 4.51
1313 1510 4.453136 CCAAATCTTTGTTCAGCAAATGGG 59.547 41.667 2.29 0.00 45.00 4.00
1314 1511 5.049954 CACCAAATCTTTGTTCAGCAAATGG 60.050 40.000 3.48 3.48 45.00 3.16
1315 1512 5.524646 ACACCAAATCTTTGTTCAGCAAATG 59.475 36.000 2.29 0.00 45.00 2.32
1316 1513 5.524646 CACACCAAATCTTTGTTCAGCAAAT 59.475 36.000 2.29 0.00 45.00 2.32
1317 1514 4.869297 CACACCAAATCTTTGTTCAGCAAA 59.131 37.500 2.29 0.00 44.05 3.68
1318 1515 4.081752 ACACACCAAATCTTTGTTCAGCAA 60.082 37.500 2.29 0.00 36.45 3.91
1319 1516 3.446873 ACACACCAAATCTTTGTTCAGCA 59.553 39.130 2.29 0.00 36.45 4.41
1320 1517 4.045636 ACACACCAAATCTTTGTTCAGC 57.954 40.909 2.29 0.00 36.45 4.26
1321 1518 5.519722 GGTACACACCAAATCTTTGTTCAG 58.480 41.667 0.00 0.00 45.04 3.02
1322 1519 4.035792 CGGTACACACCAAATCTTTGTTCA 59.964 41.667 0.00 0.00 46.14 3.18
1323 1520 4.035909 ACGGTACACACCAAATCTTTGTTC 59.964 41.667 0.00 0.00 46.14 3.18
1324 1521 3.949113 ACGGTACACACCAAATCTTTGTT 59.051 39.130 0.00 0.00 46.14 2.83
1325 1522 3.547746 ACGGTACACACCAAATCTTTGT 58.452 40.909 0.00 0.00 46.14 2.83
1326 1523 4.035792 TCAACGGTACACACCAAATCTTTG 59.964 41.667 0.00 0.00 46.14 2.77
1327 1524 4.200874 TCAACGGTACACACCAAATCTTT 58.799 39.130 0.00 0.00 46.14 2.52
1328 1525 3.811083 TCAACGGTACACACCAAATCTT 58.189 40.909 0.00 0.00 46.14 2.40
1330 1527 3.119990 CCATCAACGGTACACACCAAATC 60.120 47.826 0.00 0.00 46.14 2.17
1331 1528 2.817258 CCATCAACGGTACACACCAAAT 59.183 45.455 0.00 0.00 46.14 2.32
1332 1529 2.158798 TCCATCAACGGTACACACCAAA 60.159 45.455 0.00 0.00 46.14 3.28
1333 1530 1.416772 TCCATCAACGGTACACACCAA 59.583 47.619 0.00 0.00 46.14 3.67
1334 1531 1.049402 TCCATCAACGGTACACACCA 58.951 50.000 0.00 0.00 46.14 4.17
1335 1532 2.172851 TTCCATCAACGGTACACACC 57.827 50.000 0.00 0.00 41.93 4.16
1337 1534 3.135225 CAGTTTCCATCAACGGTACACA 58.865 45.455 0.00 0.00 0.00 3.72
1338 1535 3.395639 TCAGTTTCCATCAACGGTACAC 58.604 45.455 0.00 0.00 0.00 2.90
1339 1536 3.755112 TCAGTTTCCATCAACGGTACA 57.245 42.857 0.00 0.00 0.00 2.90
1340 1537 5.411669 AGAATTCAGTTTCCATCAACGGTAC 59.588 40.000 8.44 0.00 0.00 3.34
1341 1538 5.556915 AGAATTCAGTTTCCATCAACGGTA 58.443 37.500 8.44 0.00 0.00 4.02
1342 1539 4.398319 AGAATTCAGTTTCCATCAACGGT 58.602 39.130 8.44 0.00 0.00 4.83
1343 1540 5.376854 AAGAATTCAGTTTCCATCAACGG 57.623 39.130 8.44 0.00 0.00 4.44
1344 1541 6.697019 ACAAAAGAATTCAGTTTCCATCAACG 59.303 34.615 8.44 0.00 0.00 4.10
1346 1543 6.479660 GCACAAAAGAATTCAGTTTCCATCAA 59.520 34.615 8.44 0.00 0.00 2.57
1347 1544 5.984926 GCACAAAAGAATTCAGTTTCCATCA 59.015 36.000 8.44 0.00 0.00 3.07
1348 1545 5.984926 TGCACAAAAGAATTCAGTTTCCATC 59.015 36.000 8.44 0.00 0.00 3.51
1349 1546 5.916318 TGCACAAAAGAATTCAGTTTCCAT 58.084 33.333 8.44 0.00 0.00 3.41
1350 1547 5.105392 ACTGCACAAAAGAATTCAGTTTCCA 60.105 36.000 8.44 4.31 31.51 3.53
1352 1549 5.807011 ACACTGCACAAAAGAATTCAGTTTC 59.193 36.000 8.44 0.00 33.08 2.78
1354 1551 5.329035 ACACTGCACAAAAGAATTCAGTT 57.671 34.783 8.44 0.00 33.08 3.16
1355 1552 4.989279 ACACTGCACAAAAGAATTCAGT 57.011 36.364 8.44 0.00 35.42 3.41
1356 1553 4.905866 CGTACACTGCACAAAAGAATTCAG 59.094 41.667 8.44 0.00 0.00 3.02
1358 1555 4.670621 CACGTACACTGCACAAAAGAATTC 59.329 41.667 0.00 0.00 0.00 2.17
1359 1556 4.095782 ACACGTACACTGCACAAAAGAATT 59.904 37.500 0.00 0.00 0.00 2.17
1360 1557 3.625764 ACACGTACACTGCACAAAAGAAT 59.374 39.130 0.00 0.00 0.00 2.40
1362 1559 2.623535 ACACGTACACTGCACAAAAGA 58.376 42.857 0.00 0.00 0.00 2.52
1363 1560 3.554324 AGTACACGTACACTGCACAAAAG 59.446 43.478 9.85 0.00 38.48 2.27
1364 1561 3.307512 CAGTACACGTACACTGCACAAAA 59.692 43.478 13.82 0.00 38.48 2.44
1365 1562 2.861335 CAGTACACGTACACTGCACAAA 59.139 45.455 13.82 0.00 38.48 2.83
1367 1564 2.128367 CAGTACACGTACACTGCACA 57.872 50.000 13.82 0.00 38.48 4.57
1372 1569 3.181499 GCAGATAGCAGTACACGTACACT 60.181 47.826 9.85 8.64 44.79 3.55
1373 1570 3.106672 GCAGATAGCAGTACACGTACAC 58.893 50.000 9.85 1.85 44.79 2.90
1374 1571 3.416119 GCAGATAGCAGTACACGTACA 57.584 47.619 9.85 0.00 44.79 2.90
1403 1600 8.683615 CCTCACATGTACTAGTTCATACAACTA 58.316 37.037 13.89 0.00 35.05 2.24
1404 1601 7.396339 TCCTCACATGTACTAGTTCATACAACT 59.604 37.037 13.89 0.00 35.05 3.16
1405 1602 7.544622 TCCTCACATGTACTAGTTCATACAAC 58.455 38.462 13.89 0.00 35.05 3.32
1406 1603 7.712204 TCCTCACATGTACTAGTTCATACAA 57.288 36.000 13.89 3.08 35.05 2.41
1407 1604 7.201911 CCATCCTCACATGTACTAGTTCATACA 60.202 40.741 13.89 6.67 35.82 2.29
1409 1606 7.014326 GTCCATCCTCACATGTACTAGTTCATA 59.986 40.741 13.89 0.00 0.00 2.15
1410 1607 5.899547 TCCATCCTCACATGTACTAGTTCAT 59.100 40.000 9.03 9.03 0.00 2.57
1411 1608 5.127194 GTCCATCCTCACATGTACTAGTTCA 59.873 44.000 0.00 1.74 0.00 3.18
1412 1609 5.593010 GTCCATCCTCACATGTACTAGTTC 58.407 45.833 0.00 0.00 0.00 3.01
1413 1610 4.098044 CGTCCATCCTCACATGTACTAGTT 59.902 45.833 0.00 0.00 0.00 2.24
1415 1612 3.632604 ACGTCCATCCTCACATGTACTAG 59.367 47.826 0.00 0.00 0.00 2.57
1416 1613 3.628008 ACGTCCATCCTCACATGTACTA 58.372 45.455 0.00 0.00 0.00 1.82
1417 1614 2.457598 ACGTCCATCCTCACATGTACT 58.542 47.619 0.00 0.00 0.00 2.73
1420 1617 4.487714 AATTACGTCCATCCTCACATGT 57.512 40.909 0.00 0.00 0.00 3.21
1421 1618 4.635765 ACAAATTACGTCCATCCTCACATG 59.364 41.667 0.00 0.00 0.00 3.21
1422 1619 4.843728 ACAAATTACGTCCATCCTCACAT 58.156 39.130 0.00 0.00 0.00 3.21
1423 1620 4.280436 ACAAATTACGTCCATCCTCACA 57.720 40.909 0.00 0.00 0.00 3.58
1424 1621 4.693566 TGAACAAATTACGTCCATCCTCAC 59.306 41.667 0.00 0.00 0.00 3.51
1425 1622 4.900684 TGAACAAATTACGTCCATCCTCA 58.099 39.130 0.00 0.00 0.00 3.86
1426 1623 4.935808 ACTGAACAAATTACGTCCATCCTC 59.064 41.667 0.00 0.00 0.00 3.71
1427 1624 4.695455 CACTGAACAAATTACGTCCATCCT 59.305 41.667 0.00 0.00 0.00 3.24
1429 1626 5.607119 ACACTGAACAAATTACGTCCATC 57.393 39.130 0.00 0.00 0.00 3.51
1431 1628 5.603596 ACTACACTGAACAAATTACGTCCA 58.396 37.500 0.00 0.00 0.00 4.02
1433 1630 8.236084 ACATACTACACTGAACAAATTACGTC 57.764 34.615 0.00 0.00 0.00 4.34
1439 1636 9.856488 CAGTACTACATACTACACTGAACAAAT 57.144 33.333 0.00 0.00 42.62 2.32
1440 1637 7.811236 GCAGTACTACATACTACACTGAACAAA 59.189 37.037 0.00 0.00 42.62 2.83
1441 1638 7.176165 AGCAGTACTACATACTACACTGAACAA 59.824 37.037 0.00 0.00 42.62 2.83
1443 1640 7.086230 AGCAGTACTACATACTACACTGAAC 57.914 40.000 0.00 0.00 42.62 3.18
1444 1641 8.837389 CATAGCAGTACTACATACTACACTGAA 58.163 37.037 0.00 0.00 42.62 3.02
1452 1649 8.705594 ACCAAAATCATAGCAGTACTACATACT 58.294 33.333 0.00 0.00 45.61 2.12
1453 1650 8.888579 ACCAAAATCATAGCAGTACTACATAC 57.111 34.615 0.00 0.00 32.32 2.39
1455 1652 8.807948 AAACCAAAATCATAGCAGTACTACAT 57.192 30.769 0.00 0.00 32.32 2.29
1456 1653 8.511321 CAAAACCAAAATCATAGCAGTACTACA 58.489 33.333 0.00 0.00 32.32 2.74
1457 1654 7.484959 GCAAAACCAAAATCATAGCAGTACTAC 59.515 37.037 0.00 0.00 32.32 2.73
1458 1655 7.175816 TGCAAAACCAAAATCATAGCAGTACTA 59.824 33.333 0.00 0.00 34.64 1.82
1459 1656 6.015519 TGCAAAACCAAAATCATAGCAGTACT 60.016 34.615 0.00 0.00 0.00 2.73
1460 1657 6.155827 TGCAAAACCAAAATCATAGCAGTAC 58.844 36.000 0.00 0.00 0.00 2.73
1461 1658 6.338214 TGCAAAACCAAAATCATAGCAGTA 57.662 33.333 0.00 0.00 0.00 2.74
1462 1659 5.212532 TGCAAAACCAAAATCATAGCAGT 57.787 34.783 0.00 0.00 0.00 4.40
1463 1660 6.542574 TTTGCAAAACCAAAATCATAGCAG 57.457 33.333 10.02 0.00 32.20 4.24
1464 1661 6.541641 ACTTTTGCAAAACCAAAATCATAGCA 59.458 30.769 20.46 0.00 42.04 3.49
1469 1666 7.247019 GCTAAACTTTTGCAAAACCAAAATCA 58.753 30.769 20.46 0.00 42.04 2.57
1470 1667 6.690957 GGCTAAACTTTTGCAAAACCAAAATC 59.309 34.615 20.46 7.41 42.04 2.17
1471 1668 6.151817 TGGCTAAACTTTTGCAAAACCAAAAT 59.848 30.769 20.46 6.78 42.04 1.82
1472 1669 5.473504 TGGCTAAACTTTTGCAAAACCAAAA 59.526 32.000 20.46 0.00 41.07 2.44
1473 1670 5.003804 TGGCTAAACTTTTGCAAAACCAAA 58.996 33.333 20.46 6.35 33.21 3.28
1474 1671 4.579869 TGGCTAAACTTTTGCAAAACCAA 58.420 34.783 20.46 0.51 0.00 3.67
1475 1672 4.207891 TGGCTAAACTTTTGCAAAACCA 57.792 36.364 20.46 20.18 0.00 3.67
1476 1673 5.295540 TCATTGGCTAAACTTTTGCAAAACC 59.704 36.000 20.46 17.99 0.00 3.27
1477 1674 6.356757 TCATTGGCTAAACTTTTGCAAAAC 57.643 33.333 20.46 9.65 0.00 2.43
1493 1690 1.956477 ACAGAGTGTTGGTTCATTGGC 59.044 47.619 0.00 0.00 0.00 4.52
1495 1692 6.373779 GTTGATACAGAGTGTTGGTTCATTG 58.626 40.000 0.00 0.00 0.00 2.82
1496 1693 5.473504 GGTTGATACAGAGTGTTGGTTCATT 59.526 40.000 0.00 0.00 0.00 2.57
1497 1694 5.003804 GGTTGATACAGAGTGTTGGTTCAT 58.996 41.667 0.00 0.00 0.00 2.57
1498 1695 4.385825 GGTTGATACAGAGTGTTGGTTCA 58.614 43.478 0.00 0.00 0.00 3.18
1555 1752 1.000486 ACTCCCGCTTCTAGCTCCA 60.000 57.895 0.00 0.00 39.60 3.86
1882 2087 1.132640 GCATCGAACAGTTGGCGTC 59.867 57.895 0.00 0.00 0.00 5.19
2007 2325 3.554960 GCATGAACTTGGGAAAAGAACCC 60.555 47.826 0.00 0.00 46.87 4.11
2080 2457 4.093556 GCTCCATGTAGTTTGTCTTAGCAC 59.906 45.833 0.00 0.00 0.00 4.40
2252 5820 0.691078 AGGAAAGCCGCATCCCTAGA 60.691 55.000 10.68 0.00 39.96 2.43
2259 5827 1.453155 CTACACAAGGAAAGCCGCAT 58.547 50.000 0.00 0.00 39.96 4.73
2260 5828 1.234615 GCTACACAAGGAAAGCCGCA 61.235 55.000 0.00 0.00 39.96 5.69
2261 5829 0.955919 AGCTACACAAGGAAAGCCGC 60.956 55.000 0.00 0.00 39.96 6.53
2402 5977 4.099419 ACCAAAGCCTCTTTACTGTTTTGG 59.901 41.667 13.30 13.30 45.21 3.28
2472 6047 1.005242 CACATTTCTCAGAGCGCATCG 60.005 52.381 11.47 0.00 0.00 3.84
2578 6154 4.420206 TCATCAGTTCTTCCTCCTCAAGA 58.580 43.478 0.00 0.00 0.00 3.02
2789 6372 1.588239 AGCTCTCAACATGATCCCCA 58.412 50.000 0.00 0.00 0.00 4.96
2882 6493 7.106239 AGCTATACATTAGCACTGTCTGTTTT 58.894 34.615 7.31 0.00 42.68 2.43
2976 6587 2.762535 TCCCCTTTAAGAGCAACTCG 57.237 50.000 0.00 0.00 35.36 4.18
2983 6594 3.587506 TGAGGACCTTTCCCCTTTAAGAG 59.412 47.826 0.00 0.00 44.10 2.85
3096 6707 8.344831 CACTGTCTGTTTTATTTTCACATGAGA 58.655 33.333 0.00 0.00 0.00 3.27
4180 8244 2.069273 AGTTTCGCGTCCATCTGAAAG 58.931 47.619 5.77 0.00 31.55 2.62
4286 8350 0.461339 GCGGCCGAGAATAAGGAACA 60.461 55.000 33.48 0.00 0.00 3.18
4629 8739 0.460109 CCTGCACGCTACAGCATACA 60.460 55.000 1.61 0.00 40.42 2.29
4643 8755 4.498894 AATCAAGATGTCATCTCCTGCA 57.501 40.909 15.75 3.27 39.08 4.41
4670 8782 7.084486 GGATACCAAGTTCAACATCAAAGTTC 58.916 38.462 0.00 0.00 0.00 3.01
4726 8838 7.009174 CGCCTGGTATTTAAGTTAAATTTGCAG 59.991 37.037 22.52 12.27 39.06 4.41
4746 8860 2.910688 ATGTACCATACTTCGCCTGG 57.089 50.000 0.00 0.00 36.09 4.45
4750 8864 4.243270 GGGATGTATGTACCATACTTCGC 58.757 47.826 20.81 20.81 35.84 4.70
4753 8867 4.597507 CCTGGGGATGTATGTACCATACTT 59.402 45.833 13.74 8.64 0.00 2.24
4833 8950 9.495572 AAGTGTTTTGAAAGTATTTGGTTTTCA 57.504 25.926 0.00 0.00 39.27 2.69
4848 8965 3.732471 GCACCGCAACTAAGTGTTTTGAA 60.732 43.478 0.00 0.00 36.63 2.69
4849 8966 2.223386 GCACCGCAACTAAGTGTTTTGA 60.223 45.455 0.00 0.00 36.63 2.69
4862 8979 2.745281 GGTAAGAACTAATGCACCGCAA 59.255 45.455 0.00 0.00 43.62 4.85
4863 8980 2.027561 AGGTAAGAACTAATGCACCGCA 60.028 45.455 0.00 0.00 44.86 5.69
4866 8983 3.858247 ACGAGGTAAGAACTAATGCACC 58.142 45.455 0.00 0.00 0.00 5.01
4875 8992 8.950961 GTCAAAAACAATAAACGAGGTAAGAAC 58.049 33.333 0.00 0.00 0.00 3.01
4879 8996 8.622157 TCATGTCAAAAACAATAAACGAGGTAA 58.378 29.630 0.00 0.00 42.37 2.85
4880 8997 8.155821 TCATGTCAAAAACAATAAACGAGGTA 57.844 30.769 0.00 0.00 42.37 3.08
4900 9017 8.877864 TTATTGGTTGATTCCTTTACTCATGT 57.122 30.769 0.00 0.00 0.00 3.21
4906 9023 8.803235 ACCTTTCTTATTGGTTGATTCCTTTAC 58.197 33.333 0.00 0.00 0.00 2.01
4917 9034 4.827284 CACACTCCACCTTTCTTATTGGTT 59.173 41.667 0.00 0.00 30.72 3.67
4928 9045 3.181445 TGAAAGCATACACACTCCACCTT 60.181 43.478 0.00 0.00 0.00 3.50
4930 9047 2.778299 TGAAAGCATACACACTCCACC 58.222 47.619 0.00 0.00 0.00 4.61
4935 9052 3.424703 AGCCATTGAAAGCATACACACT 58.575 40.909 0.00 0.00 0.00 3.55
5022 9159 2.223386 CGCAACCAAGACGAAGGAAAAA 60.223 45.455 0.00 0.00 0.00 1.94
5023 9160 1.332375 CGCAACCAAGACGAAGGAAAA 59.668 47.619 0.00 0.00 0.00 2.29
5026 9163 1.301401 CCGCAACCAAGACGAAGGA 60.301 57.895 0.00 0.00 0.00 3.36
5030 9167 2.970324 GCACCGCAACCAAGACGA 60.970 61.111 0.00 0.00 0.00 4.20
5033 9170 1.750780 TTGTGCACCGCAACCAAGA 60.751 52.632 15.69 0.00 41.47 3.02
5049 9186 6.515272 AGGTGCATAAGTCATTTTAGGTTG 57.485 37.500 0.00 0.00 0.00 3.77
5057 9194 3.704566 TCCGTCTAGGTGCATAAGTCATT 59.295 43.478 0.00 0.00 41.99 2.57
5171 9370 1.472082 CTGCGTTGCCATTTGGTGATA 59.528 47.619 0.00 0.00 37.57 2.15
5250 9449 8.193250 GACTTAAGTCAAAACTAATATGCGGA 57.807 34.615 27.12 0.00 44.18 5.54
5280 9891 8.869897 TCTACAAACTTGATCGCACTTTATAAG 58.130 33.333 0.00 0.00 0.00 1.73
5540 10154 0.240945 GGCTCCATTGTTGTGAACGG 59.759 55.000 0.00 0.00 0.00 4.44
5670 10291 1.423845 CTGCGTGCCGGTTTCATAC 59.576 57.895 1.90 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.