Multiple sequence alignment - TraesCS7B01G274600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G274600 chr7B 100.000 4909 0 0 987 5895 504187151 504192059 0.000000e+00 9066.0
1 TraesCS7B01G274600 chr7B 100.000 542 0 0 1 542 504186165 504186706 0.000000e+00 1002.0
2 TraesCS7B01G274600 chr7B 78.261 276 40 12 5194 5465 169359899 169360158 6.110000e-35 159.0
3 TraesCS7B01G274600 chr7B 91.753 97 8 0 3937 4033 162120812 162120908 1.030000e-27 135.0
4 TraesCS7B01G274600 chr2B 92.525 3398 186 28 1879 5246 87924835 87921476 0.000000e+00 4806.0
5 TraesCS7B01G274600 chr2B 86.043 738 38 11 5204 5895 87921464 87920746 0.000000e+00 732.0
6 TraesCS7B01G274600 chr2B 90.179 112 8 1 5202 5313 790882600 790882708 6.160000e-30 143.0
7 TraesCS7B01G274600 chr2B 87.273 110 12 2 5377 5484 450365604 450365713 2.230000e-24 124.0
8 TraesCS7B01G274600 chr2B 83.333 72 9 3 37 107 583525565 583525496 4.930000e-06 63.9
9 TraesCS7B01G274600 chr1D 89.921 3542 232 56 1705 5188 465127798 465131272 0.000000e+00 4447.0
10 TraesCS7B01G274600 chr1D 83.010 671 86 14 999 1662 465127140 465127789 3.060000e-162 582.0
11 TraesCS7B01G274600 chr1D 87.949 390 20 4 5528 5891 465131273 465131661 9.070000e-118 435.0
12 TraesCS7B01G274600 chr1A 91.208 2832 184 26 2008 4790 557488443 557491258 0.000000e+00 3790.0
13 TraesCS7B01G274600 chr1A 84.335 1015 117 21 1012 2007 557487414 557488405 0.000000e+00 955.0
14 TraesCS7B01G274600 chr1A 89.159 452 18 6 5473 5893 557491390 557491841 8.700000e-148 534.0
15 TraesCS7B01G274600 chr1A 76.939 490 44 35 98 529 557486852 557487330 1.290000e-51 215.0
16 TraesCS7B01G274600 chr1A 89.552 134 8 2 5051 5178 557491254 557491387 1.310000e-36 165.0
17 TraesCS7B01G274600 chr1A 80.751 213 24 9 5273 5481 297980840 297980641 3.680000e-32 150.0
18 TraesCS7B01G274600 chr1A 80.282 213 25 9 5273 5481 113048846 113049045 1.710000e-30 145.0
19 TraesCS7B01G274600 chr4B 87.749 2506 191 49 1247 3705 112034490 112036926 0.000000e+00 2820.0
20 TraesCS7B01G274600 chr4B 92.218 1285 86 6 3704 4984 112037030 112038304 0.000000e+00 1807.0
21 TraesCS7B01G274600 chr4B 89.888 445 18 4 5475 5893 112038914 112039357 1.120000e-151 547.0
22 TraesCS7B01G274600 chr4B 76.102 431 49 25 135 528 112033351 112033764 6.070000e-40 176.0
23 TraesCS7B01G274600 chr3A 87.867 783 64 20 4421 5195 22220085 22219326 0.000000e+00 891.0
24 TraesCS7B01G274600 chr3A 87.661 778 64 18 4427 5195 22222609 22221855 0.000000e+00 876.0
25 TraesCS7B01G274600 chr3A 87.429 700 53 21 4503 5195 22207061 22206390 0.000000e+00 773.0
26 TraesCS7B01G274600 chr3A 84.459 444 23 14 5475 5893 22206395 22205973 4.280000e-106 396.0
27 TraesCS7B01G274600 chr3A 83.796 432 48 14 5475 5893 22219331 22218909 1.990000e-104 390.0
28 TraesCS7B01G274600 chr3A 83.678 435 43 21 5475 5893 22221860 22221438 9.270000e-103 385.0
29 TraesCS7B01G274600 chr3A 80.751 213 24 9 5273 5481 344517205 344517006 3.680000e-32 150.0
30 TraesCS7B01G274600 chr3A 89.815 108 11 0 3926 4033 470095789 470095682 7.970000e-29 139.0
31 TraesCS7B01G274600 chr3A 77.056 231 40 9 1626 1846 723563566 723563339 2.890000e-23 121.0
32 TraesCS7B01G274600 chr7A 83.983 462 61 9 998 1455 7050613 7051065 1.170000e-116 431.0
33 TraesCS7B01G274600 chr2D 84.018 438 55 6 1002 1437 613464523 613464947 1.980000e-109 407.0
34 TraesCS7B01G274600 chr2D 88.333 120 12 1 5194 5313 544336578 544336461 6.160000e-30 143.0
35 TraesCS7B01G274600 chr2D 76.623 308 38 11 5194 5480 418555474 418555180 7.970000e-29 139.0
36 TraesCS7B01G274600 chr2D 85.496 131 15 2 5194 5323 337562182 337562309 3.710000e-27 134.0
37 TraesCS7B01G274600 chr7D 88.104 269 24 6 4789 5056 363048923 363048662 4.440000e-81 313.0
38 TraesCS7B01G274600 chr7D 78.964 309 38 14 5194 5479 21096411 21096715 1.010000e-42 185.0
39 TraesCS7B01G274600 chr7D 89.524 105 10 1 5377 5480 193847818 193847922 1.330000e-26 132.0
40 TraesCS7B01G274600 chr7D 81.290 155 25 4 5328 5480 30291836 30291988 8.020000e-24 122.0
41 TraesCS7B01G274600 chr4D 87.786 262 24 4 4789 5049 145579507 145579761 3.450000e-77 300.0
42 TraesCS7B01G274600 chr4D 78.571 308 32 13 5194 5480 118151452 118151158 7.850000e-39 172.0
43 TraesCS7B01G274600 chr4D 88.571 105 11 1 5377 5480 348162613 348162717 6.200000e-25 126.0
44 TraesCS7B01G274600 chr5B 87.121 264 26 4 4786 5048 446430706 446430450 5.780000e-75 292.0
45 TraesCS7B01G274600 chr5B 90.291 103 9 1 3936 4038 166379183 166379082 3.710000e-27 134.0
46 TraesCS7B01G274600 chr1B 82.919 322 43 9 1021 1339 107795117 107794805 4.500000e-71 279.0
47 TraesCS7B01G274600 chr6D 78.095 315 45 9 5184 5480 25471841 25472149 1.690000e-40 178.0
48 TraesCS7B01G274600 chrUn 78.247 308 44 12 5194 5480 82563782 82563477 6.070000e-40 176.0
49 TraesCS7B01G274600 chr5D 77.778 306 47 13 5193 5483 210678195 210677896 1.020000e-37 169.0
50 TraesCS7B01G274600 chr5D 77.273 308 36 12 5194 5480 222228408 222228114 3.680000e-32 150.0
51 TraesCS7B01G274600 chr5D 89.109 101 11 0 3933 4033 139440912 139441012 6.200000e-25 126.0
52 TraesCS7B01G274600 chr5A 81.517 211 26 6 5273 5481 575067136 575066937 1.700000e-35 161.0
53 TraesCS7B01G274600 chr5A 80.660 212 26 7 5273 5481 399662808 399662609 3.680000e-32 150.0
54 TraesCS7B01G274600 chr4A 81.221 213 23 9 5273 5481 463266129 463266328 7.910000e-34 156.0
55 TraesCS7B01G274600 chr6B 80.841 214 23 10 5273 5481 180610649 180610449 1.020000e-32 152.0
56 TraesCS7B01G274600 chr6B 76.655 287 33 13 5215 5480 645180050 645179777 1.720000e-25 128.0
57 TraesCS7B01G274600 chr3B 80.751 213 24 9 5273 5481 310521792 310521991 3.680000e-32 150.0
58 TraesCS7B01G274600 chr6A 85.714 133 13 6 5193 5323 6747207 6747335 1.030000e-27 135.0
59 TraesCS7B01G274600 chr3D 86.607 112 13 2 3923 4034 9066362 9066253 8.020000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G274600 chr7B 504186165 504192059 5894 False 5034.000000 9066 100.00000 1 5895 2 chr7B.!!$F3 5894
1 TraesCS7B01G274600 chr2B 87920746 87924835 4089 True 2769.000000 4806 89.28400 1879 5895 2 chr2B.!!$R2 4016
2 TraesCS7B01G274600 chr1D 465127140 465131661 4521 False 1821.333333 4447 86.96000 999 5891 3 chr1D.!!$F1 4892
3 TraesCS7B01G274600 chr1A 557486852 557491841 4989 False 1131.800000 3790 86.23860 98 5893 5 chr1A.!!$F2 5795
4 TraesCS7B01G274600 chr4B 112033351 112039357 6006 False 1337.500000 2820 86.48925 135 5893 4 chr4B.!!$F1 5758
5 TraesCS7B01G274600 chr3A 22218909 22222609 3700 True 635.500000 891 85.75050 4421 5893 4 chr3A.!!$R5 1472
6 TraesCS7B01G274600 chr3A 22205973 22207061 1088 True 584.500000 773 85.94400 4503 5893 2 chr3A.!!$R4 1390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.106894 AGGTGGCGCTATTTCTAGCC 59.893 55.0 7.64 0.0 46.41 3.93 F
1228 1321 0.178918 GAGGGAGGGAGGGGTAGATG 60.179 65.0 0.00 0.0 0.00 2.90 F
1310 1800 0.402887 TGATATCGAGGTCGCCCCTA 59.597 55.0 0.00 0.0 46.51 3.53 F
1414 1904 0.532573 CTGCGAGAGGAAGGCAGTTA 59.467 55.0 4.20 0.0 46.82 2.24 F
3363 3970 0.035458 AAGGCCAGACTCAGGTTTCG 59.965 55.0 5.01 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1893 2409 0.178992 TGAAGAAACTGGGGCTGGTG 60.179 55.000 0.00 0.00 0.00 4.17 R
2196 2769 0.251341 CCTAAACCAACCAGCCAGCT 60.251 55.000 0.00 0.00 0.00 4.24 R
3030 3617 1.275010 TGAATGCGTCAGGCTAGTCAA 59.725 47.619 0.00 0.00 44.05 3.18 R
3410 4017 0.323360 GGGTGGCCTCAAATGCACTA 60.323 55.000 3.32 0.00 0.00 2.74 R
5317 9047 0.320073 TGCTTTCAATGGCTTGCAGC 60.320 50.000 0.11 0.11 41.46 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.679996 GAGCCCCCAACGCCAAAT 60.680 61.111 0.00 0.00 0.00 2.32
30 31 2.203773 AGCCCCCAACGCCAAATT 60.204 55.556 0.00 0.00 0.00 1.82
31 32 1.826340 GAGCCCCCAACGCCAAATTT 61.826 55.000 0.00 0.00 0.00 1.82
32 33 1.375396 GCCCCCAACGCCAAATTTC 60.375 57.895 0.00 0.00 0.00 2.17
33 34 1.295101 CCCCCAACGCCAAATTTCC 59.705 57.895 0.00 0.00 0.00 3.13
34 35 1.295101 CCCCAACGCCAAATTTCCC 59.705 57.895 0.00 0.00 0.00 3.97
35 36 1.080161 CCCAACGCCAAATTTCCCG 60.080 57.895 5.68 5.68 0.00 5.14
36 37 1.736282 CCAACGCCAAATTTCCCGC 60.736 57.895 6.85 0.33 0.00 6.13
37 38 1.736282 CAACGCCAAATTTCCCGCC 60.736 57.895 6.85 0.00 0.00 6.13
38 39 3.275832 AACGCCAAATTTCCCGCCG 62.276 57.895 6.85 0.53 0.00 6.46
39 40 4.490575 CGCCAAATTTCCCGCCGG 62.491 66.667 0.00 0.00 0.00 6.13
40 41 4.812476 GCCAAATTTCCCGCCGGC 62.812 66.667 19.07 19.07 0.00 6.13
41 42 4.490575 CCAAATTTCCCGCCGGCG 62.491 66.667 41.00 41.00 39.44 6.46
60 61 4.506255 GCCCCAGGTGGCGCTATT 62.506 66.667 7.64 0.00 42.54 1.73
61 62 2.275418 CCCCAGGTGGCGCTATTT 59.725 61.111 7.64 0.00 0.00 1.40
62 63 1.823899 CCCCAGGTGGCGCTATTTC 60.824 63.158 7.64 0.00 0.00 2.17
63 64 1.224592 CCCAGGTGGCGCTATTTCT 59.775 57.895 7.64 0.00 0.00 2.52
64 65 0.468226 CCCAGGTGGCGCTATTTCTA 59.532 55.000 7.64 0.00 0.00 2.10
65 66 1.541233 CCCAGGTGGCGCTATTTCTAG 60.541 57.143 7.64 0.00 0.00 2.43
66 67 1.221414 CAGGTGGCGCTATTTCTAGC 58.779 55.000 7.64 0.00 45.79 3.42
67 68 0.106894 AGGTGGCGCTATTTCTAGCC 59.893 55.000 7.64 0.00 46.41 3.93
68 69 0.106894 GGTGGCGCTATTTCTAGCCT 59.893 55.000 7.64 0.00 46.41 4.58
69 70 1.503294 GTGGCGCTATTTCTAGCCTC 58.497 55.000 7.64 0.00 46.41 4.70
70 71 1.069358 GTGGCGCTATTTCTAGCCTCT 59.931 52.381 7.64 0.00 46.41 3.69
71 72 1.069204 TGGCGCTATTTCTAGCCTCTG 59.931 52.381 7.64 0.00 46.41 3.35
72 73 1.606737 GGCGCTATTTCTAGCCTCTGG 60.607 57.143 7.64 0.00 46.41 3.86
73 74 1.606737 GCGCTATTTCTAGCCTCTGGG 60.607 57.143 0.00 0.00 46.41 4.45
74 75 1.001406 CGCTATTTCTAGCCTCTGGGG 59.999 57.143 0.00 0.00 46.41 4.96
75 76 1.349357 GCTATTTCTAGCCTCTGGGGG 59.651 57.143 0.00 0.00 43.90 5.40
83 84 4.740822 CCTCTGGGGGCCAAACGG 62.741 72.222 4.39 0.00 30.80 4.44
92 93 3.508840 GCCAAACGGCCGGAGATG 61.509 66.667 31.76 20.75 44.46 2.90
93 94 3.508840 CCAAACGGCCGGAGATGC 61.509 66.667 31.76 0.00 0.00 3.91
94 95 2.436646 CAAACGGCCGGAGATGCT 60.437 61.111 31.76 2.42 0.00 3.79
95 96 2.125106 AAACGGCCGGAGATGCTC 60.125 61.111 31.76 0.00 0.00 4.26
96 97 2.660064 AAACGGCCGGAGATGCTCT 61.660 57.895 31.76 0.57 0.00 4.09
131 132 2.828661 GGAGCTCCCCCTTGTTTTAT 57.171 50.000 23.19 0.00 0.00 1.40
171 182 3.479203 TGGGTAGCCGCCTGGATG 61.479 66.667 6.45 0.00 37.49 3.51
185 196 3.194329 GCCTGGATGGAAAAGGAAAAGAG 59.806 47.826 0.00 0.00 38.35 2.85
203 214 2.897969 AGAGAAAAAGGCACTACTCCGA 59.102 45.455 0.00 0.00 38.49 4.55
210 221 1.089920 GGCACTACTCCGACGACTTA 58.910 55.000 0.00 0.00 0.00 2.24
215 226 1.396301 CTACTCCGACGACTTACGCTT 59.604 52.381 0.00 0.00 46.94 4.68
216 227 1.442769 ACTCCGACGACTTACGCTTA 58.557 50.000 0.00 0.00 46.94 3.09
217 228 2.012673 ACTCCGACGACTTACGCTTAT 58.987 47.619 0.00 0.00 46.94 1.73
218 229 3.198068 ACTCCGACGACTTACGCTTATA 58.802 45.455 0.00 0.00 46.94 0.98
234 245 6.245724 ACGCTTATATCGCTTAAACAAACAC 58.754 36.000 0.00 0.00 0.00 3.32
235 246 5.675444 CGCTTATATCGCTTAAACAAACACC 59.325 40.000 0.00 0.00 0.00 4.16
236 247 6.548171 GCTTATATCGCTTAAACAAACACCA 58.452 36.000 0.00 0.00 0.00 4.17
237 248 6.468000 GCTTATATCGCTTAAACAAACACCAC 59.532 38.462 0.00 0.00 0.00 4.16
238 249 5.950758 ATATCGCTTAAACAAACACCACA 57.049 34.783 0.00 0.00 0.00 4.17
239 250 4.640789 ATCGCTTAAACAAACACCACAA 57.359 36.364 0.00 0.00 0.00 3.33
241 252 4.806330 TCGCTTAAACAAACACCACAAAA 58.194 34.783 0.00 0.00 0.00 2.44
242 253 4.621886 TCGCTTAAACAAACACCACAAAAC 59.378 37.500 0.00 0.00 0.00 2.43
244 255 5.107453 CGCTTAAACAAACACCACAAAACAA 60.107 36.000 0.00 0.00 0.00 2.83
245 256 6.564125 CGCTTAAACAAACACCACAAAACAAA 60.564 34.615 0.00 0.00 0.00 2.83
246 257 6.575572 GCTTAAACAAACACCACAAAACAAAC 59.424 34.615 0.00 0.00 0.00 2.93
247 258 7.548196 TTAAACAAACACCACAAAACAAACA 57.452 28.000 0.00 0.00 0.00 2.83
248 259 5.411083 AACAAACACCACAAAACAAACAC 57.589 34.783 0.00 0.00 0.00 3.32
254 290 1.488393 CCACAAAACAAACACCCCCAT 59.512 47.619 0.00 0.00 0.00 4.00
269 305 0.390603 CCCATAGAAACCACGTGCGA 60.391 55.000 10.91 0.00 0.00 5.10
287 323 5.628134 GTGCGAATAGTAAACAAAAGAGGG 58.372 41.667 0.00 0.00 0.00 4.30
291 327 5.220416 CGAATAGTAAACAAAAGAGGGCGAG 60.220 44.000 0.00 0.00 0.00 5.03
312 352 1.418373 GAACAAACAAATCCGGCAGC 58.582 50.000 0.00 0.00 0.00 5.25
314 354 1.112315 ACAAACAAATCCGGCAGCCA 61.112 50.000 13.30 0.00 0.00 4.75
370 426 2.350895 CAACTGCGTCCCATCCCA 59.649 61.111 0.00 0.00 0.00 4.37
372 428 2.525124 AACTGCGTCCCATCCCACA 61.525 57.895 0.00 0.00 0.00 4.17
407 463 3.009115 GCCCTACCTGCCTCACCA 61.009 66.667 0.00 0.00 0.00 4.17
427 495 1.375326 GAGCAAACGACCCTCCCTT 59.625 57.895 0.00 0.00 0.00 3.95
436 504 1.004891 ACCCTCCCTTCCTCCATCC 59.995 63.158 0.00 0.00 0.00 3.51
450 518 1.123928 CCATCCCGTAGCTTCCTCTT 58.876 55.000 0.00 0.00 0.00 2.85
451 519 1.202580 CCATCCCGTAGCTTCCTCTTG 60.203 57.143 0.00 0.00 0.00 3.02
461 529 1.899438 GCTTCCTCTTGTCTCCCTCCT 60.899 57.143 0.00 0.00 0.00 3.69
462 530 2.107366 CTTCCTCTTGTCTCCCTCCTC 58.893 57.143 0.00 0.00 0.00 3.71
465 533 0.689412 CTCTTGTCTCCCTCCTCCCC 60.689 65.000 0.00 0.00 0.00 4.81
466 534 1.156322 TCTTGTCTCCCTCCTCCCCT 61.156 60.000 0.00 0.00 0.00 4.79
467 535 0.980231 CTTGTCTCCCTCCTCCCCTG 60.980 65.000 0.00 0.00 0.00 4.45
469 537 2.955246 TCTCCCTCCTCCCCTGCT 60.955 66.667 0.00 0.00 0.00 4.24
470 538 2.445654 CTCCCTCCTCCCCTGCTC 60.446 72.222 0.00 0.00 0.00 4.26
508 576 2.159142 CGCCCGAACTAACCAACTAGAT 60.159 50.000 0.00 0.00 0.00 1.98
512 580 4.142315 CCCGAACTAACCAACTAGATCGAA 60.142 45.833 10.66 0.00 43.19 3.71
519 589 2.292323 ACCAACTAGATCGAACTCCCCT 60.292 50.000 0.00 0.00 0.00 4.79
539 609 4.547367 CCGCCCTTCCGGTCCATC 62.547 72.222 0.00 0.00 43.24 3.51
540 610 3.781307 CGCCCTTCCGGTCCATCA 61.781 66.667 0.00 0.00 0.00 3.07
1055 1144 0.321122 CCAGCTGCGAAGAAGAAGGT 60.321 55.000 8.66 0.00 0.00 3.50
1056 1145 0.795085 CAGCTGCGAAGAAGAAGGTG 59.205 55.000 0.00 0.00 32.47 4.00
1060 1149 1.003233 GCGAAGAAGAAGGTGGGCT 60.003 57.895 0.00 0.00 0.00 5.19
1098 1190 0.759436 GGTTCGGGGCTCCTGATCTA 60.759 60.000 0.00 0.00 38.86 1.98
1132 1225 1.836604 TTTTTCCCTGGTGCTGGGC 60.837 57.895 0.00 0.00 41.59 5.36
1143 1236 1.340991 GGTGCTGGGCTCAGGATTTTA 60.341 52.381 17.16 0.00 43.14 1.52
1144 1237 1.745653 GTGCTGGGCTCAGGATTTTAC 59.254 52.381 17.16 0.00 43.14 2.01
1145 1238 1.354031 TGCTGGGCTCAGGATTTTACA 59.646 47.619 17.16 0.00 41.19 2.41
1146 1239 2.019984 GCTGGGCTCAGGATTTTACAG 58.980 52.381 17.16 0.00 41.19 2.74
1147 1240 2.619074 GCTGGGCTCAGGATTTTACAGT 60.619 50.000 17.16 0.00 41.19 3.55
1148 1241 3.690460 CTGGGCTCAGGATTTTACAGTT 58.310 45.455 5.38 0.00 37.36 3.16
1149 1242 4.843728 CTGGGCTCAGGATTTTACAGTTA 58.156 43.478 5.38 0.00 37.36 2.24
1192 1285 1.502163 GGATTTGGATCTGCGCGGAG 61.502 60.000 25.24 22.84 32.66 4.63
1218 1311 0.863220 TTTAGGGAGGGAGGGAGGGA 60.863 60.000 0.00 0.00 0.00 4.20
1220 1313 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1221 1314 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
1222 1315 4.179599 GAGGGAGGGAGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
1228 1321 0.178918 GAGGGAGGGAGGGGTAGATG 60.179 65.000 0.00 0.00 0.00 2.90
1236 1329 3.174779 GGGAGGGGTAGATGTAGGAATC 58.825 54.545 0.00 0.00 0.00 2.52
1238 1331 3.439558 GGAGGGGTAGATGTAGGAATCCA 60.440 52.174 0.61 0.00 0.00 3.41
1241 1334 2.288886 GGGTAGATGTAGGAATCCACGC 60.289 54.545 0.61 0.00 0.00 5.34
1253 1739 1.512926 ATCCACGCGATTGATTAGCC 58.487 50.000 15.93 0.00 0.00 3.93
1310 1800 0.402887 TGATATCGAGGTCGCCCCTA 59.597 55.000 0.00 0.00 46.51 3.53
1321 1811 2.357361 GGTCGCCCCTATAGCTAGATCT 60.357 54.545 0.00 0.00 0.00 2.75
1323 1813 2.576648 TCGCCCCTATAGCTAGATCTCA 59.423 50.000 0.00 0.00 0.00 3.27
1359 1849 3.148279 GGTGGTCGGATCGCTCCT 61.148 66.667 3.43 0.00 39.65 3.69
1361 1851 2.833582 TGGTCGGATCGCTCCTCC 60.834 66.667 3.43 6.59 39.65 4.30
1380 1870 1.831652 CGCCTTGACCCTGGAGAACT 61.832 60.000 0.00 0.00 0.00 3.01
1383 1873 0.689623 CTTGACCCTGGAGAACTGCT 59.310 55.000 0.00 0.00 0.00 4.24
1385 1875 1.140312 TGACCCTGGAGAACTGCTTT 58.860 50.000 0.00 0.00 0.00 3.51
1414 1904 0.532573 CTGCGAGAGGAAGGCAGTTA 59.467 55.000 4.20 0.00 46.82 2.24
1415 1905 0.973632 TGCGAGAGGAAGGCAGTTAA 59.026 50.000 0.00 0.00 32.07 2.01
1440 1930 5.063944 GCTGCTTGATTCGAGTCAAATAAGA 59.936 40.000 21.73 1.66 37.63 2.10
1444 1934 6.403333 TTGATTCGAGTCAAATAAGAACGG 57.597 37.500 19.66 0.00 35.31 4.44
1445 1935 5.475719 TGATTCGAGTCAAATAAGAACGGT 58.524 37.500 8.32 0.00 0.00 4.83
1446 1936 5.929992 TGATTCGAGTCAAATAAGAACGGTT 59.070 36.000 8.32 0.00 0.00 4.44
1447 1937 5.834239 TTCGAGTCAAATAAGAACGGTTC 57.166 39.130 12.91 12.91 0.00 3.62
1448 1938 5.130292 TCGAGTCAAATAAGAACGGTTCT 57.870 39.130 17.38 17.38 43.15 3.01
1449 1939 4.921515 TCGAGTCAAATAAGAACGGTTCTG 59.078 41.667 23.05 11.71 40.59 3.02
1450 1940 4.921515 CGAGTCAAATAAGAACGGTTCTGA 59.078 41.667 23.05 16.84 40.59 3.27
1451 1941 5.164080 CGAGTCAAATAAGAACGGTTCTGAC 60.164 44.000 23.05 22.73 40.59 3.51
1452 1942 5.855045 AGTCAAATAAGAACGGTTCTGACT 58.145 37.500 25.05 25.05 40.59 3.41
1453 1943 6.289064 AGTCAAATAAGAACGGTTCTGACTT 58.711 36.000 25.05 14.12 40.59 3.01
1454 1944 6.424207 AGTCAAATAAGAACGGTTCTGACTTC 59.576 38.462 25.05 14.22 40.59 3.01
1455 1945 6.202188 GTCAAATAAGAACGGTTCTGACTTCA 59.798 38.462 23.05 0.00 40.59 3.02
1456 1946 6.764085 TCAAATAAGAACGGTTCTGACTTCAA 59.236 34.615 23.05 5.27 40.59 2.69
1457 1947 7.281324 TCAAATAAGAACGGTTCTGACTTCAAA 59.719 33.333 23.05 4.05 40.59 2.69
1458 1948 7.562454 AATAAGAACGGTTCTGACTTCAAAA 57.438 32.000 23.05 2.76 40.59 2.44
1459 1949 5.485662 AAGAACGGTTCTGACTTCAAAAG 57.514 39.130 23.05 0.00 40.59 2.27
1460 1950 4.766375 AGAACGGTTCTGACTTCAAAAGA 58.234 39.130 21.86 0.00 38.91 2.52
1485 1975 6.331307 AGGGCTGATTCTGAATTCCTAATAGT 59.669 38.462 4.11 0.00 0.00 2.12
1526 2026 5.736951 ATCTAGGCTATGGTTCAGATGTC 57.263 43.478 0.00 0.00 0.00 3.06
1534 2034 3.469008 TGGTTCAGATGTCTTTCGTGT 57.531 42.857 0.00 0.00 0.00 4.49
1551 2051 7.385752 TCTTTCGTGTAACCGATTAGAACATTT 59.614 33.333 0.00 0.00 36.62 2.32
1552 2052 7.424227 TTCGTGTAACCGATTAGAACATTTT 57.576 32.000 0.00 0.00 36.62 1.82
1553 2053 6.823531 TCGTGTAACCGATTAGAACATTTTG 58.176 36.000 0.00 0.00 30.63 2.44
1558 2058 9.438228 TGTAACCGATTAGAACATTTTGTATCA 57.562 29.630 0.00 0.00 0.00 2.15
1561 2062 6.882140 ACCGATTAGAACATTTTGTATCACCA 59.118 34.615 0.00 0.00 0.00 4.17
1567 2068 7.391148 AGAACATTTTGTATCACCATGTACC 57.609 36.000 0.00 0.00 0.00 3.34
1579 2080 2.948979 ACCATGTACCATTTATGTGCCG 59.051 45.455 0.00 0.00 0.00 5.69
1607 2112 2.488153 AGCCCAAAATAGTCTGAAACGC 59.512 45.455 0.00 0.00 0.00 4.84
1621 2126 3.670625 TGAAACGCAGTGGTTTAGCTAT 58.329 40.909 8.98 0.00 45.00 2.97
1624 2129 1.066143 ACGCAGTGGTTTAGCTATGCT 60.066 47.619 11.76 0.00 42.51 3.79
1625 2130 2.167693 ACGCAGTGGTTTAGCTATGCTA 59.832 45.455 11.76 0.00 42.51 3.49
1637 2142 4.199432 AGCTATGCTACACTGATATGGC 57.801 45.455 0.00 0.00 36.99 4.40
1670 2175 3.219176 AGGACATGGGATGTAGCAATG 57.781 47.619 0.00 0.00 45.03 2.82
1737 2252 6.969993 AGTGCCCTGTAATAAAAACAGAAA 57.030 33.333 4.84 0.00 45.89 2.52
1740 2255 7.709182 AGTGCCCTGTAATAAAAACAGAAAAAC 59.291 33.333 4.84 0.00 45.89 2.43
1782 2297 1.130777 ACTGCCCCATTTGTTGCTTT 58.869 45.000 0.00 0.00 0.00 3.51
1817 2333 2.303022 TCGAGGCTTTGAGGACTGAATT 59.697 45.455 0.00 0.00 0.00 2.17
1869 2385 4.301072 TTTAAGTTGTAGCATGAGCCCT 57.699 40.909 0.00 0.00 43.56 5.19
1882 2398 5.074239 AGCATGAGCCCTTAGAGGATATTTT 59.926 40.000 0.00 0.00 43.56 1.82
1906 2422 1.152756 GACAACACCAGCCCCAGTT 60.153 57.895 0.00 0.00 0.00 3.16
2036 2589 1.067364 CCAACACAGCAGCAACATCAA 59.933 47.619 0.00 0.00 0.00 2.57
2045 2598 2.357009 GCAGCAACATCAATAGGTCAGG 59.643 50.000 0.00 0.00 0.00 3.86
2060 2623 4.298626 AGGTCAGGAGGAGCATTATACAA 58.701 43.478 0.00 0.00 46.51 2.41
2081 2644 7.534723 ACAACAAAGTATAGTGGTGACTCTA 57.465 36.000 3.63 0.00 40.41 2.43
2086 2649 5.712084 AGTATAGTGGTGACTCTAGACCA 57.288 43.478 0.00 0.00 45.20 4.02
2094 2657 2.558795 GTGACTCTAGACCACAGCAAGA 59.441 50.000 13.05 0.00 0.00 3.02
2103 2666 1.003580 ACCACAGCAAGACGAATCCAT 59.996 47.619 0.00 0.00 0.00 3.41
2150 2722 4.384537 CCCAGTTGCTCTTGATCCAATCTA 60.385 45.833 0.00 0.00 0.00 1.98
2191 2764 4.023193 GCGAATAAAGAGGGAGAGAGAGAG 60.023 50.000 0.00 0.00 0.00 3.20
2192 2765 5.373222 CGAATAAAGAGGGAGAGAGAGAGA 58.627 45.833 0.00 0.00 0.00 3.10
2193 2766 5.470098 CGAATAAAGAGGGAGAGAGAGAGAG 59.530 48.000 0.00 0.00 0.00 3.20
2194 2767 6.590656 AATAAAGAGGGAGAGAGAGAGAGA 57.409 41.667 0.00 0.00 0.00 3.10
2195 2768 4.510167 AAAGAGGGAGAGAGAGAGAGAG 57.490 50.000 0.00 0.00 0.00 3.20
2196 2769 3.421394 AGAGGGAGAGAGAGAGAGAGA 57.579 52.381 0.00 0.00 0.00 3.10
2202 2775 1.133976 AGAGAGAGAGAGAGAGCTGGC 60.134 57.143 0.00 0.00 0.00 4.85
2237 2820 1.421646 GTGGGCATCTACTGGGCTTAT 59.578 52.381 0.00 0.00 0.00 1.73
2245 2828 2.032620 CTACTGGGCTTATCGTGTCCT 58.967 52.381 0.00 0.00 0.00 3.85
2251 2834 2.205074 GGCTTATCGTGTCCTGACATG 58.795 52.381 12.30 12.30 46.78 3.21
2320 2905 1.977056 ACTGTATCTGGCGTATCGGA 58.023 50.000 0.00 0.00 0.00 4.55
2323 2908 2.229062 CTGTATCTGGCGTATCGGATGT 59.771 50.000 0.00 0.00 34.80 3.06
2333 2918 4.927425 GGCGTATCGGATGTGTATTGTAAT 59.073 41.667 0.00 0.00 0.00 1.89
2381 2966 5.047847 GGTGCTTCATAGTCGTTTAGCATA 58.952 41.667 0.00 0.00 40.32 3.14
2383 2968 6.346919 GGTGCTTCATAGTCGTTTAGCATATG 60.347 42.308 0.00 0.00 40.32 1.78
2408 2993 8.407832 TGTTCTTATGATGGATTGCTATGTTTG 58.592 33.333 0.00 0.00 0.00 2.93
2410 2995 9.625747 TTCTTATGATGGATTGCTATGTTTGTA 57.374 29.630 0.00 0.00 0.00 2.41
2595 3182 4.578105 CCAGAAACTAGAAATGGAGGATGC 59.422 45.833 0.00 0.00 32.55 3.91
2657 3244 3.454858 TCTGGGAAGTCTAAGGCAAGAT 58.545 45.455 0.00 0.00 0.00 2.40
2774 3361 3.012560 GCAACTGCTGAGAACCAGT 57.987 52.632 0.00 0.00 44.71 4.00
2789 3376 4.344102 AGAACCAGTAACACAGTAGCAAGA 59.656 41.667 0.00 0.00 0.00 3.02
2837 3424 1.455822 TGGGAACTTCTGGGGACAAT 58.544 50.000 0.00 0.00 42.06 2.71
2839 3426 3.197983 TGGGAACTTCTGGGGACAATAT 58.802 45.455 0.00 0.00 42.06 1.28
2939 3526 4.600111 AGGGGCGGACTCCAAATAATATTA 59.400 41.667 0.00 0.00 0.00 0.98
2984 3571 5.680619 TGCCAGTCTCAAGTAAAAGAAAGA 58.319 37.500 0.00 0.00 0.00 2.52
3010 3597 6.319658 TGCTTTCTGAAGAGACAAGTTTTCAT 59.680 34.615 0.00 0.00 34.71 2.57
3114 3701 6.604396 TCAATTAGCACAGATGATGGTTCAAT 59.396 34.615 0.00 0.00 34.96 2.57
3135 3723 2.228582 TGGTGAAAATGAGGATGTTGCG 59.771 45.455 0.00 0.00 0.00 4.85
3178 3783 0.250467 AGCGTGAAGACAGTGCCAAT 60.250 50.000 0.00 0.00 31.56 3.16
3253 3859 2.310052 AGGTGGATTCAAGGAAAGAGGG 59.690 50.000 0.00 0.00 0.00 4.30
3301 3908 1.737838 CTCTGGAAAGTTGCCGCATA 58.262 50.000 0.00 0.00 0.00 3.14
3312 3919 1.679139 TGCCGCATAGAAATCCCTTG 58.321 50.000 0.00 0.00 0.00 3.61
3332 3939 3.534554 TGCAAGCATCGAATGTAGTGAT 58.465 40.909 0.00 0.00 0.00 3.06
3363 3970 0.035458 AAGGCCAGACTCAGGTTTCG 59.965 55.000 5.01 0.00 0.00 3.46
3410 4017 7.125507 TGCACCAAATTTTCCTCCAATGTATAT 59.874 33.333 0.00 0.00 0.00 0.86
3417 4024 9.592196 AATTTTCCTCCAATGTATATAGTGCAT 57.408 29.630 0.00 0.00 34.34 3.96
3433 4040 1.654023 GCATTTGAGGCCACCCGTAC 61.654 60.000 5.01 0.00 35.76 3.67
3448 4055 2.691526 CCCGTACACAATGGACTAGCTA 59.308 50.000 0.00 0.00 36.17 3.32
3596 4203 0.392193 CAAGCCGAATGAGCAGGAGT 60.392 55.000 0.00 0.00 0.00 3.85
3695 4306 5.412286 GGAAAAGGTTATGTTGCTACGGTAA 59.588 40.000 0.00 0.00 0.00 2.85
3779 4495 9.933723 GATTTGTTAGGTTAGGTAAGAACACTA 57.066 33.333 0.00 0.00 0.00 2.74
3841 4557 2.633481 AGTCTACTGTCCAGTCCCAAAC 59.367 50.000 2.65 0.00 42.54 2.93
3842 4558 2.633481 GTCTACTGTCCAGTCCCAAACT 59.367 50.000 2.65 0.00 42.54 2.66
3949 4665 7.418712 CCACTTTAATTACTACTCCCTCCGATT 60.419 40.741 0.00 0.00 0.00 3.34
4011 4731 3.185188 CCTCAGTTCAACACTTCGACATG 59.815 47.826 0.00 0.00 30.92 3.21
4036 4756 3.897657 ATGGTTCGGAGGGAGTATCTA 57.102 47.619 0.00 0.00 33.73 1.98
4046 4766 5.515106 GGAGGGAGTATCTATGAGCAGTAT 58.485 45.833 0.00 0.00 33.73 2.12
4125 4845 8.090214 ACATGGTTGAAAAGTAATTCCTCATTG 58.910 33.333 0.00 0.00 0.00 2.82
4175 4895 9.268255 CCTTTTGTTCGTTTAAAATTTGGAAAC 57.732 29.630 14.65 14.65 0.00 2.78
4206 4926 6.595716 CGTTTCCCTTTCTCTTCTGTATGAAT 59.404 38.462 0.00 0.00 33.71 2.57
4211 4931 6.404074 CCCTTTCTCTTCTGTATGAATTGCAC 60.404 42.308 0.00 0.00 33.71 4.57
4215 4935 4.910195 TCTTCTGTATGAATTGCACAGGT 58.090 39.130 9.58 0.00 40.08 4.00
4250 4970 2.089980 CTGCTCTTTTGGAGGATGGTG 58.910 52.381 0.00 0.00 41.47 4.17
4251 4971 1.272092 TGCTCTTTTGGAGGATGGTGG 60.272 52.381 0.00 0.00 42.08 4.61
4252 4972 1.272147 GCTCTTTTGGAGGATGGTGGT 60.272 52.381 0.00 0.00 42.08 4.16
4256 4976 3.913799 TCTTTTGGAGGATGGTGGTAAGA 59.086 43.478 0.00 0.00 0.00 2.10
4312 5032 0.110486 CTGGTATAAGGCCGGGCATT 59.890 55.000 31.59 23.38 36.30 3.56
4433 5153 3.472652 ACATACAACTTCGGCAGAAACA 58.527 40.909 0.00 0.00 35.71 2.83
4445 5165 3.250762 CGGCAGAAACAAAGTGAAGATCA 59.749 43.478 0.00 0.00 0.00 2.92
4528 5248 1.966451 CACGGGCCAGGAGAACAAC 60.966 63.158 8.08 0.00 0.00 3.32
4609 7861 1.423845 CTGCGTGCCGGTTTCATAC 59.576 57.895 1.90 0.00 0.00 2.39
4618 7870 2.151202 CCGGTTTCATACTGTGCTTGT 58.849 47.619 0.00 0.00 0.00 3.16
4739 7991 0.240945 GGCTCCATTGTTGTGAACGG 59.759 55.000 0.00 0.00 0.00 4.44
4999 8255 8.869897 TCTACAAACTTGATCGCACTTTATAAG 58.130 33.333 0.00 0.00 0.00 1.73
5029 8697 8.193250 GACTTAAGTCAAAACTAATATGCGGA 57.807 34.615 27.12 0.00 44.18 5.54
5108 8776 1.472082 CTGCGTTGCCATTTGGTGATA 59.528 47.619 0.00 0.00 37.57 2.15
5222 8952 3.704566 TCCGTCTAGGTGCATAAGTCATT 59.295 43.478 0.00 0.00 41.99 2.57
5230 8960 6.515272 AGGTGCATAAGTCATTTTAGGTTG 57.485 37.500 0.00 0.00 0.00 3.77
5246 8976 1.750780 TTGTGCACCGCAACCAAGA 60.751 52.632 15.69 0.00 41.47 3.02
5249 8979 2.970324 GCACCGCAACCAAGACGA 60.970 61.111 0.00 0.00 0.00 4.20
5253 8983 1.301401 CCGCAACCAAGACGAAGGA 60.301 57.895 0.00 0.00 0.00 3.36
5256 8986 1.332375 CGCAACCAAGACGAAGGAAAA 59.668 47.619 0.00 0.00 0.00 2.29
5257 8987 2.223386 CGCAACCAAGACGAAGGAAAAA 60.223 45.455 0.00 0.00 0.00 1.94
5344 9094 3.424703 AGCCATTGAAAGCATACACACT 58.575 40.909 0.00 0.00 0.00 3.55
5349 9099 2.778299 TGAAAGCATACACACTCCACC 58.222 47.619 0.00 0.00 0.00 4.61
5351 9101 3.181445 TGAAAGCATACACACTCCACCTT 60.181 43.478 0.00 0.00 0.00 3.50
5362 9112 4.827284 CACACTCCACCTTTCTTATTGGTT 59.173 41.667 0.00 0.00 30.72 3.67
5373 9123 8.803235 ACCTTTCTTATTGGTTGATTCCTTTAC 58.197 33.333 0.00 0.00 0.00 2.01
5379 9129 8.877864 TTATTGGTTGATTCCTTTACTCATGT 57.122 30.769 0.00 0.00 0.00 3.21
5399 9149 8.155821 TCATGTCAAAAACAATAAACGAGGTA 57.844 30.769 0.00 0.00 42.37 3.08
5400 9150 8.622157 TCATGTCAAAAACAATAAACGAGGTAA 58.378 29.630 0.00 0.00 42.37 2.85
5404 9154 8.950961 GTCAAAAACAATAAACGAGGTAAGAAC 58.049 33.333 0.00 0.00 0.00 3.01
5413 9163 3.858247 ACGAGGTAAGAACTAATGCACC 58.142 45.455 0.00 0.00 0.00 5.01
5416 9166 2.027561 AGGTAAGAACTAATGCACCGCA 60.028 45.455 0.00 0.00 44.86 5.69
5417 9167 2.745281 GGTAAGAACTAATGCACCGCAA 59.255 45.455 0.00 0.00 43.62 4.85
5430 9180 2.223386 GCACCGCAACTAAGTGTTTTGA 60.223 45.455 0.00 0.00 36.63 2.69
5431 9181 3.732471 GCACCGCAACTAAGTGTTTTGAA 60.732 43.478 0.00 0.00 36.63 2.69
5446 9196 9.495572 AAGTGTTTTGAAAGTATTTGGTTTTCA 57.504 25.926 0.00 0.00 39.27 2.69
5526 9279 4.597507 CCTGGGGATGTATGTACCATACTT 59.402 45.833 13.74 8.64 0.00 2.24
5529 9282 4.243270 GGGATGTATGTACCATACTTCGC 58.757 47.826 20.81 20.81 35.84 4.70
5533 9286 2.910688 ATGTACCATACTTCGCCTGG 57.089 50.000 0.00 0.00 36.09 4.45
5553 9308 7.009174 CGCCTGGTATTTAAGTTAAATTTGCAG 59.991 37.037 22.52 12.27 39.06 4.41
5609 9364 7.084486 GGATACCAAGTTCAACATCAAAGTTC 58.916 38.462 0.00 0.00 0.00 3.01
5636 9391 4.498894 AATCAAGATGTCATCTCCTGCA 57.501 40.909 15.75 3.27 39.08 4.41
5650 9407 0.460109 CCTGCACGCTACAGCATACA 60.460 55.000 1.61 0.00 40.42 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.826340 AAATTTGGCGTTGGGGGCTC 61.826 55.000 0.00 0.00 0.00 4.70
13 14 1.826340 GAAATTTGGCGTTGGGGGCT 61.826 55.000 0.00 0.00 0.00 5.19
14 15 1.375396 GAAATTTGGCGTTGGGGGC 60.375 57.895 0.00 0.00 0.00 5.80
15 16 1.295101 GGAAATTTGGCGTTGGGGG 59.705 57.895 0.00 0.00 0.00 5.40
16 17 1.295101 GGGAAATTTGGCGTTGGGG 59.705 57.895 0.00 0.00 0.00 4.96
17 18 1.080161 CGGGAAATTTGGCGTTGGG 60.080 57.895 0.00 0.00 0.00 4.12
18 19 1.736282 GCGGGAAATTTGGCGTTGG 60.736 57.895 0.00 0.00 0.00 3.77
19 20 1.736282 GGCGGGAAATTTGGCGTTG 60.736 57.895 0.00 0.00 0.00 4.10
20 21 2.654289 GGCGGGAAATTTGGCGTT 59.346 55.556 0.00 0.00 0.00 4.84
21 22 3.743636 CGGCGGGAAATTTGGCGT 61.744 61.111 12.88 0.00 45.26 5.68
23 24 4.812476 GCCGGCGGGAAATTTGGC 62.812 66.667 29.48 5.55 34.06 4.52
24 25 4.490575 CGCCGGCGGGAAATTTGG 62.491 66.667 40.50 8.79 34.06 3.28
45 46 0.468226 TAGAAATAGCGCCACCTGGG 59.532 55.000 2.29 0.00 40.85 4.45
46 47 1.871080 CTAGAAATAGCGCCACCTGG 58.129 55.000 2.29 0.00 38.53 4.45
47 48 1.221414 GCTAGAAATAGCGCCACCTG 58.779 55.000 2.29 0.00 32.99 4.00
48 49 0.106894 GGCTAGAAATAGCGCCACCT 59.893 55.000 2.29 0.00 43.70 4.00
49 50 0.106894 AGGCTAGAAATAGCGCCACC 59.893 55.000 2.29 0.00 44.85 4.61
50 51 1.069358 AGAGGCTAGAAATAGCGCCAC 59.931 52.381 2.29 0.00 44.85 5.01
51 52 1.069204 CAGAGGCTAGAAATAGCGCCA 59.931 52.381 2.29 0.00 44.85 5.69
52 53 1.606737 CCAGAGGCTAGAAATAGCGCC 60.607 57.143 2.29 0.00 43.70 6.53
53 54 1.606737 CCCAGAGGCTAGAAATAGCGC 60.607 57.143 0.00 0.00 43.70 5.92
54 55 1.001406 CCCCAGAGGCTAGAAATAGCG 59.999 57.143 0.00 0.00 43.70 4.26
55 56 1.349357 CCCCCAGAGGCTAGAAATAGC 59.651 57.143 0.00 0.00 42.12 2.97
66 67 4.740822 CCGTTTGGCCCCCAGAGG 62.741 72.222 0.00 0.00 33.81 3.69
76 77 3.508840 GCATCTCCGGCCGTTTGG 61.509 66.667 26.12 8.83 38.77 3.28
77 78 2.436646 AGCATCTCCGGCCGTTTG 60.437 61.111 26.12 16.07 0.00 2.93
78 79 2.125106 GAGCATCTCCGGCCGTTT 60.125 61.111 26.12 2.04 0.00 3.60
93 94 4.319177 CTCCCGGCTCCATTTTATAAGAG 58.681 47.826 0.00 0.00 0.00 2.85
94 95 3.496160 GCTCCCGGCTCCATTTTATAAGA 60.496 47.826 0.00 0.00 38.06 2.10
95 96 2.814336 GCTCCCGGCTCCATTTTATAAG 59.186 50.000 0.00 0.00 38.06 1.73
96 97 2.858745 GCTCCCGGCTCCATTTTATAA 58.141 47.619 0.00 0.00 38.06 0.98
111 112 8.892569 TTTTAAATAAAACAAGGGGGAGCTCCC 61.893 40.741 39.86 39.86 41.40 4.30
130 131 9.942850 CCACTGGATTTGTTATCCTTTTTAAAT 57.057 29.630 5.48 0.00 38.95 1.40
131 132 8.371699 CCCACTGGATTTGTTATCCTTTTTAAA 58.628 33.333 0.00 0.00 38.95 1.52
171 182 5.523916 GTGCCTTTTTCTCTTTTCCTTTTCC 59.476 40.000 0.00 0.00 0.00 3.13
185 196 1.725164 CGTCGGAGTAGTGCCTTTTTC 59.275 52.381 0.00 0.00 0.00 2.29
203 214 3.892918 AGCGATATAAGCGTAAGTCGT 57.107 42.857 14.73 3.99 42.13 4.34
210 221 6.245724 GTGTTTGTTTAAGCGATATAAGCGT 58.754 36.000 0.00 0.02 40.04 5.07
215 226 7.436430 TTGTGGTGTTTGTTTAAGCGATATA 57.564 32.000 0.00 0.00 0.00 0.86
216 227 5.950758 TGTGGTGTTTGTTTAAGCGATAT 57.049 34.783 0.00 0.00 0.00 1.63
217 228 5.752892 TTGTGGTGTTTGTTTAAGCGATA 57.247 34.783 0.00 0.00 0.00 2.92
218 229 4.640789 TTGTGGTGTTTGTTTAAGCGAT 57.359 36.364 0.00 0.00 0.00 4.58
234 245 0.905357 TGGGGGTGTTTGTTTTGTGG 59.095 50.000 0.00 0.00 0.00 4.17
235 246 2.998316 ATGGGGGTGTTTGTTTTGTG 57.002 45.000 0.00 0.00 0.00 3.33
236 247 3.917300 TCTATGGGGGTGTTTGTTTTGT 58.083 40.909 0.00 0.00 0.00 2.83
237 248 4.946478 TTCTATGGGGGTGTTTGTTTTG 57.054 40.909 0.00 0.00 0.00 2.44
238 249 4.101898 GGTTTCTATGGGGGTGTTTGTTTT 59.898 41.667 0.00 0.00 0.00 2.43
239 250 3.644265 GGTTTCTATGGGGGTGTTTGTTT 59.356 43.478 0.00 0.00 0.00 2.83
241 252 2.178106 TGGTTTCTATGGGGGTGTTTGT 59.822 45.455 0.00 0.00 0.00 2.83
242 253 2.560981 GTGGTTTCTATGGGGGTGTTTG 59.439 50.000 0.00 0.00 0.00 2.93
244 255 1.271707 CGTGGTTTCTATGGGGGTGTT 60.272 52.381 0.00 0.00 0.00 3.32
245 256 0.326927 CGTGGTTTCTATGGGGGTGT 59.673 55.000 0.00 0.00 0.00 4.16
246 257 0.326927 ACGTGGTTTCTATGGGGGTG 59.673 55.000 0.00 0.00 0.00 4.61
247 258 0.326927 CACGTGGTTTCTATGGGGGT 59.673 55.000 7.95 0.00 0.00 4.95
248 259 1.029947 GCACGTGGTTTCTATGGGGG 61.030 60.000 18.88 0.00 0.00 5.40
254 290 3.581024 ACTATTCGCACGTGGTTTCTA 57.419 42.857 18.88 0.00 0.00 2.10
269 305 4.395231 GCTCGCCCTCTTTTGTTTACTATT 59.605 41.667 0.00 0.00 0.00 1.73
287 323 1.327507 GGATTTGTTTGTTCGCTCGC 58.672 50.000 0.00 0.00 0.00 5.03
291 327 0.318275 TGCCGGATTTGTTTGTTCGC 60.318 50.000 5.05 0.00 0.00 4.70
357 413 4.386951 CGTGTGGGATGGGACGCA 62.387 66.667 0.00 0.00 0.00 5.24
364 420 2.815211 CAGCGACCGTGTGGGATG 60.815 66.667 0.00 0.00 40.75 3.51
365 421 2.994995 TCAGCGACCGTGTGGGAT 60.995 61.111 0.00 0.00 40.75 3.85
394 450 1.990060 GCTCCTGGTGAGGCAGGTA 60.990 63.158 0.00 0.00 41.73 3.08
402 458 1.070786 GGTCGTTTGCTCCTGGTGA 59.929 57.895 0.00 0.00 0.00 4.02
403 459 1.966451 GGGTCGTTTGCTCCTGGTG 60.966 63.158 0.00 0.00 0.00 4.17
407 463 2.593956 GGGAGGGTCGTTTGCTCCT 61.594 63.158 0.00 0.00 34.80 3.69
427 495 0.759436 GGAAGCTACGGGATGGAGGA 60.759 60.000 0.00 0.00 0.00 3.71
436 504 1.135333 GGAGACAAGAGGAAGCTACGG 59.865 57.143 0.00 0.00 0.00 4.02
450 518 2.780693 CAGGGGAGGAGGGAGACA 59.219 66.667 0.00 0.00 0.00 3.41
451 519 2.766229 GCAGGGGAGGAGGGAGAC 60.766 72.222 0.00 0.00 0.00 3.36
461 529 2.041265 GGAAGAGGGAGCAGGGGA 59.959 66.667 0.00 0.00 0.00 4.81
462 530 2.041928 AGGAAGAGGGAGCAGGGG 59.958 66.667 0.00 0.00 0.00 4.79
465 533 0.325110 TGGAGAGGAAGAGGGAGCAG 60.325 60.000 0.00 0.00 0.00 4.24
466 534 0.616111 GTGGAGAGGAAGAGGGAGCA 60.616 60.000 0.00 0.00 0.00 4.26
467 535 1.671901 CGTGGAGAGGAAGAGGGAGC 61.672 65.000 0.00 0.00 0.00 4.70
469 537 1.682684 GCGTGGAGAGGAAGAGGGA 60.683 63.158 0.00 0.00 0.00 4.20
470 538 2.896443 GCGTGGAGAGGAAGAGGG 59.104 66.667 0.00 0.00 0.00 4.30
1038 1127 0.321122 CCACCTTCTTCTTCGCAGCT 60.321 55.000 0.00 0.00 0.00 4.24
1046 1135 2.960688 GCCGAGCCCACCTTCTTCT 61.961 63.158 0.00 0.00 0.00 2.85
1122 1215 1.792757 AAATCCTGAGCCCAGCACCA 61.793 55.000 0.00 0.00 39.07 4.17
1143 1236 3.596214 CGCCTCCAACTGTAATAACTGT 58.404 45.455 0.00 0.00 39.24 3.55
1144 1237 2.936498 CCGCCTCCAACTGTAATAACTG 59.064 50.000 0.00 0.00 0.00 3.16
1145 1238 2.093128 CCCGCCTCCAACTGTAATAACT 60.093 50.000 0.00 0.00 0.00 2.24
1146 1239 2.285977 CCCGCCTCCAACTGTAATAAC 58.714 52.381 0.00 0.00 0.00 1.89
1147 1240 1.910671 ACCCGCCTCCAACTGTAATAA 59.089 47.619 0.00 0.00 0.00 1.40
1148 1241 1.575419 ACCCGCCTCCAACTGTAATA 58.425 50.000 0.00 0.00 0.00 0.98
1149 1242 0.696501 AACCCGCCTCCAACTGTAAT 59.303 50.000 0.00 0.00 0.00 1.89
1192 1285 1.214217 CTCCCTCCCTAAAACTCCCC 58.786 60.000 0.00 0.00 0.00 4.81
1218 1311 3.588569 GTGGATTCCTACATCTACCCCT 58.411 50.000 3.95 0.00 30.33 4.79
1220 1313 2.288886 GCGTGGATTCCTACATCTACCC 60.289 54.545 3.95 0.00 32.38 3.69
1221 1314 2.607282 CGCGTGGATTCCTACATCTACC 60.607 54.545 3.95 0.00 32.38 3.18
1222 1315 2.292569 TCGCGTGGATTCCTACATCTAC 59.707 50.000 5.77 0.00 32.63 2.59
1223 1316 2.578786 TCGCGTGGATTCCTACATCTA 58.421 47.619 5.77 0.00 0.00 1.98
1228 1321 2.218953 TCAATCGCGTGGATTCCTAC 57.781 50.000 5.77 0.14 43.52 3.18
1236 1329 0.874175 TCGGCTAATCAATCGCGTGG 60.874 55.000 5.77 0.00 0.00 4.94
1238 1331 1.206745 CGTCGGCTAATCAATCGCGT 61.207 55.000 5.77 0.00 0.00 6.01
1241 1334 1.129326 GACCGTCGGCTAATCAATCG 58.871 55.000 12.28 0.00 0.00 3.34
1253 1739 1.248785 TTCTCTTCCCCTGACCGTCG 61.249 60.000 0.00 0.00 0.00 5.12
1310 1800 3.023119 CCAGGCGATGAGATCTAGCTAT 58.977 50.000 0.00 0.00 0.00 2.97
1321 1811 2.444706 CCTCTCCCCAGGCGATGA 60.445 66.667 0.00 0.00 0.00 2.92
1323 1813 2.123077 CTCCTCTCCCCAGGCGAT 60.123 66.667 0.00 0.00 32.91 4.58
1359 1849 3.003173 CTCCAGGGTCAAGGCGGA 61.003 66.667 0.00 0.00 0.00 5.54
1361 1851 1.376037 GTTCTCCAGGGTCAAGGCG 60.376 63.158 0.00 0.00 0.00 5.52
1414 1904 2.462456 TGACTCGAATCAAGCAGCTT 57.538 45.000 0.21 0.21 0.00 3.74
1415 1905 2.462456 TTGACTCGAATCAAGCAGCT 57.538 45.000 4.98 0.00 33.62 4.24
1440 1930 3.877508 CCTCTTTTGAAGTCAGAACCGTT 59.122 43.478 0.00 0.00 0.00 4.44
1444 1934 3.251972 CAGCCCTCTTTTGAAGTCAGAAC 59.748 47.826 0.00 0.00 0.00 3.01
1445 1935 3.136443 TCAGCCCTCTTTTGAAGTCAGAA 59.864 43.478 0.00 0.00 0.00 3.02
1446 1936 2.705658 TCAGCCCTCTTTTGAAGTCAGA 59.294 45.455 0.00 0.00 0.00 3.27
1447 1937 3.131709 TCAGCCCTCTTTTGAAGTCAG 57.868 47.619 0.00 0.00 0.00 3.51
1448 1938 3.795688 ATCAGCCCTCTTTTGAAGTCA 57.204 42.857 0.00 0.00 0.00 3.41
1449 1939 4.155644 CAGAATCAGCCCTCTTTTGAAGTC 59.844 45.833 0.00 0.00 0.00 3.01
1450 1940 4.077822 CAGAATCAGCCCTCTTTTGAAGT 58.922 43.478 0.00 0.00 0.00 3.01
1451 1941 4.330250 TCAGAATCAGCCCTCTTTTGAAG 58.670 43.478 0.00 0.00 0.00 3.02
1452 1942 4.371624 TCAGAATCAGCCCTCTTTTGAA 57.628 40.909 0.00 0.00 0.00 2.69
1453 1943 4.371624 TTCAGAATCAGCCCTCTTTTGA 57.628 40.909 0.00 0.00 0.00 2.69
1454 1944 5.393896 GGAATTCAGAATCAGCCCTCTTTTG 60.394 44.000 7.93 0.00 0.00 2.44
1455 1945 4.708909 GGAATTCAGAATCAGCCCTCTTTT 59.291 41.667 7.93 0.00 0.00 2.27
1456 1946 4.017683 AGGAATTCAGAATCAGCCCTCTTT 60.018 41.667 7.93 0.00 0.00 2.52
1457 1947 3.526841 AGGAATTCAGAATCAGCCCTCTT 59.473 43.478 7.93 0.00 0.00 2.85
1458 1948 3.121688 AGGAATTCAGAATCAGCCCTCT 58.878 45.455 7.93 0.00 0.00 3.69
1459 1949 3.574354 AGGAATTCAGAATCAGCCCTC 57.426 47.619 7.93 0.00 0.00 4.30
1460 1950 5.659849 ATTAGGAATTCAGAATCAGCCCT 57.340 39.130 7.93 4.26 0.00 5.19
1485 1975 9.451002 GCCTAGATATATGTCTGTCTACAGTAA 57.549 37.037 11.93 0.75 44.12 2.24
1502 2002 7.188381 AGACATCTGAACCATAGCCTAGATAT 58.812 38.462 0.00 0.00 0.00 1.63
1506 2006 5.543507 AAGACATCTGAACCATAGCCTAG 57.456 43.478 0.00 0.00 0.00 3.02
1526 2026 6.642683 ATGTTCTAATCGGTTACACGAAAG 57.357 37.500 0.00 0.00 46.92 2.62
1534 2034 8.885722 GGTGATACAAAATGTTCTAATCGGTTA 58.114 33.333 0.00 0.00 0.00 2.85
1567 2068 1.004610 CTGCTCGACGGCACATAAATG 60.005 52.381 6.88 0.00 37.29 2.32
1579 2080 1.666189 GACTATTTTGGGCTGCTCGAC 59.334 52.381 0.00 0.00 0.00 4.20
1621 2126 1.754226 TGTCGCCATATCAGTGTAGCA 59.246 47.619 0.00 0.00 0.00 3.49
1624 2129 2.962421 TCCATGTCGCCATATCAGTGTA 59.038 45.455 0.00 0.00 0.00 2.90
1625 2130 1.762370 TCCATGTCGCCATATCAGTGT 59.238 47.619 0.00 0.00 0.00 3.55
1637 2142 3.133691 CCATGTCCTTGTATCCATGTCG 58.866 50.000 0.00 0.00 34.30 4.35
1662 2167 4.253685 TGGCTGTTTCTAGACATTGCTAC 58.746 43.478 0.00 0.00 28.58 3.58
1697 2210 9.284968 ACAGGGCACTTCATTAATTATGTATAC 57.715 33.333 0.00 0.00 35.64 1.47
1737 2252 2.234661 TGATCTCTCACGCATCCAGTTT 59.765 45.455 0.00 0.00 0.00 2.66
1740 2255 2.591571 TTGATCTCTCACGCATCCAG 57.408 50.000 0.00 0.00 0.00 3.86
1801 2317 5.755375 TCGATGATAATTCAGTCCTCAAAGC 59.245 40.000 0.00 0.00 34.73 3.51
1808 2324 6.931281 TGAGGAAATCGATGATAATTCAGTCC 59.069 38.462 0.00 0.00 34.73 3.85
1817 2333 7.551617 CCATGATGATTGAGGAAATCGATGATA 59.448 37.037 0.00 0.00 46.68 2.15
1882 2398 1.327303 GGGCTGGTGTTGTCAATCAA 58.673 50.000 0.00 0.00 0.00 2.57
1893 2409 0.178992 TGAAGAAACTGGGGCTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
1955 2471 0.337428 ATCCCAGGCAGCCAATCTTT 59.663 50.000 15.80 0.00 0.00 2.52
2036 2589 5.655394 TGTATAATGCTCCTCCTGACCTAT 58.345 41.667 0.00 0.00 0.00 2.57
2045 2598 9.765795 ACTATACTTTGTTGTATAATGCTCCTC 57.234 33.333 0.00 0.00 35.67 3.71
2060 2623 6.377712 GGTCTAGAGTCACCACTATACTTTGT 59.622 42.308 0.00 0.00 30.63 2.83
2081 2644 1.338200 GGATTCGTCTTGCTGTGGTCT 60.338 52.381 0.00 0.00 0.00 3.85
2086 2649 1.089920 GCATGGATTCGTCTTGCTGT 58.910 50.000 0.00 0.00 34.00 4.40
2094 2657 2.203070 GCCTCCGCATGGATTCGT 60.203 61.111 0.00 0.00 45.33 3.85
2121 2693 1.148273 AAGAGCAACTGGGCGACAA 59.852 52.632 0.00 0.00 39.27 3.18
2150 2722 0.610232 GCTCAATTGACCAGGGCAGT 60.610 55.000 3.38 0.00 0.00 4.40
2191 2764 1.078567 CCAACCAGCCAGCTCTCTC 60.079 63.158 0.00 0.00 0.00 3.20
2192 2765 1.422161 AACCAACCAGCCAGCTCTCT 61.422 55.000 0.00 0.00 0.00 3.10
2193 2766 0.538287 AAACCAACCAGCCAGCTCTC 60.538 55.000 0.00 0.00 0.00 3.20
2194 2767 0.771127 TAAACCAACCAGCCAGCTCT 59.229 50.000 0.00 0.00 0.00 4.09
2195 2768 1.168714 CTAAACCAACCAGCCAGCTC 58.831 55.000 0.00 0.00 0.00 4.09
2196 2769 0.251341 CCTAAACCAACCAGCCAGCT 60.251 55.000 0.00 0.00 0.00 4.24
2202 2775 1.886655 GCCCACTCCTAAACCAACCAG 60.887 57.143 0.00 0.00 0.00 4.00
2237 2820 2.261361 CGGCATGTCAGGACACGA 59.739 61.111 3.92 0.00 45.05 4.35
2320 2905 7.442364 GTCTGGCATGTCTATTACAATACACAT 59.558 37.037 0.00 0.00 42.70 3.21
2323 2908 6.099701 AGGTCTGGCATGTCTATTACAATACA 59.900 38.462 0.00 0.00 42.70 2.29
2352 2937 7.384115 GCTAAACGACTATGAAGCACCAATATA 59.616 37.037 0.00 0.00 0.00 0.86
2353 2938 6.202954 GCTAAACGACTATGAAGCACCAATAT 59.797 38.462 0.00 0.00 0.00 1.28
2381 2966 8.701908 AACATAGCAATCCATCATAAGAACAT 57.298 30.769 0.00 0.00 0.00 2.71
2383 2968 8.408601 ACAAACATAGCAATCCATCATAAGAAC 58.591 33.333 0.00 0.00 0.00 3.01
2595 3182 2.239907 AGGCCTAAACTAAGCTCAAGGG 59.760 50.000 1.29 0.00 0.00 3.95
2657 3244 3.829601 GCCTTAGGCTCTAGAGAAGCATA 59.170 47.826 24.24 8.30 46.69 3.14
2680 3267 2.614229 GCTCTCTTCCACTTGAGGTTCC 60.614 54.545 0.00 0.00 0.00 3.62
2774 3361 3.323691 TGCCTCTTCTTGCTACTGTGTTA 59.676 43.478 0.00 0.00 0.00 2.41
2837 3424 1.460305 GAGCAGAGGAGCCCCCATA 60.460 63.158 0.00 0.00 37.41 2.74
2939 3526 7.178983 TGGCATGTTTTCCTCAGAATTATTTCT 59.821 33.333 0.00 0.00 43.09 2.52
2984 3571 6.319658 TGAAAACTTGTCTCTTCAGAAAGCAT 59.680 34.615 0.00 0.00 32.18 3.79
3030 3617 1.275010 TGAATGCGTCAGGCTAGTCAA 59.725 47.619 0.00 0.00 44.05 3.18
3114 3701 2.228582 CGCAACATCCTCATTTTCACCA 59.771 45.455 0.00 0.00 0.00 4.17
3135 3723 1.448717 GCCTTCTGCTTCCGAGTCC 60.449 63.158 0.00 0.00 36.87 3.85
3253 3859 2.737252 CACTACCTGAAAAGCTCGGTTC 59.263 50.000 0.00 0.00 34.27 3.62
3301 3908 1.747355 CGATGCTTGCAAGGGATTTCT 59.253 47.619 27.10 0.70 0.00 2.52
3312 3919 4.277258 CAATCACTACATTCGATGCTTGC 58.723 43.478 0.00 0.00 0.00 4.01
3332 3939 0.740149 CTGGCCTTGATATTGCGCAA 59.260 50.000 27.24 27.24 0.00 4.85
3363 3970 1.641552 TAGTTATGCCCAGGGGTGCC 61.642 60.000 7.91 0.00 37.65 5.01
3390 3997 9.420118 TGCACTATATACATTGGAGGAAAATTT 57.580 29.630 0.00 0.00 0.00 1.82
3410 4017 0.323360 GGGTGGCCTCAAATGCACTA 60.323 55.000 3.32 0.00 0.00 2.74
3417 4024 1.071814 GTGTACGGGTGGCCTCAAA 59.928 57.895 3.32 0.00 0.00 2.69
3433 4040 4.626042 GTCTGGATAGCTAGTCCATTGTG 58.374 47.826 19.10 11.39 44.34 3.33
3462 4069 2.359975 GAAACCTGGGAGGCACCG 60.360 66.667 0.00 0.00 39.63 4.94
3596 4203 5.072055 TCTTTCCATCATCAGCTTGTTTGA 58.928 37.500 0.00 0.00 0.00 2.69
3779 4495 9.533831 AAATATCCAGACCAAGTATTTCAACTT 57.466 29.630 0.00 0.00 40.33 2.66
3808 4524 7.233757 ACTGGACAGTAGACTAAAACTCTTCAT 59.766 37.037 2.58 0.00 40.43 2.57
3841 4557 9.284968 TGAAGGAGAAACTAATAAACAAGGAAG 57.715 33.333 0.00 0.00 0.00 3.46
3842 4558 9.284968 CTGAAGGAGAAACTAATAAACAAGGAA 57.715 33.333 0.00 0.00 0.00 3.36
3949 4665 6.125327 TCAAAACTGCGACACTTATTTTGA 57.875 33.333 5.98 5.98 41.36 2.69
3992 4712 4.745125 AGTACATGTCGAAGTGTTGAACTG 59.255 41.667 0.00 0.00 39.81 3.16
4011 4731 2.664015 ACTCCCTCCGAACCATAGTAC 58.336 52.381 0.00 0.00 0.00 2.73
4036 4756 6.782082 TCAAGAAGTGACTATACTGCTCAT 57.218 37.500 0.00 0.00 35.46 2.90
4125 4845 1.206072 CTGTGCGCACAAGAAGCTC 59.794 57.895 39.43 13.16 41.33 4.09
4175 4895 6.651225 ACAGAAGAGAAAGGGAAACGATAAAG 59.349 38.462 0.00 0.00 0.00 1.85
4206 4926 2.439338 ACGTGCCAACCTGTGCAA 60.439 55.556 0.00 0.00 39.57 4.08
4211 4931 2.358737 GGAGGACGTGCCAACCTG 60.359 66.667 2.38 0.00 40.02 4.00
4215 4935 3.059982 CAGAGGAGGACGTGCCAA 58.940 61.111 2.38 0.00 40.02 4.52
4250 4970 5.234543 GCAATACCTTCTCGACAATCTTACC 59.765 44.000 0.00 0.00 0.00 2.85
4251 4971 5.234543 GGCAATACCTTCTCGACAATCTTAC 59.765 44.000 0.00 0.00 34.51 2.34
4252 4972 5.357257 GGCAATACCTTCTCGACAATCTTA 58.643 41.667 0.00 0.00 34.51 2.10
4312 5032 0.808125 CGAATTTGATGTTCGGGGCA 59.192 50.000 0.68 0.00 43.36 5.36
4404 5124 2.339418 CGAAGTTGTATGTTACGCCCA 58.661 47.619 0.00 0.00 0.00 5.36
4433 5153 4.558095 GCAAGCACACATGATCTTCACTTT 60.558 41.667 0.00 0.00 0.00 2.66
4445 5165 2.975536 GCCATGGCAAGCACACAT 59.024 55.556 32.08 0.00 41.49 3.21
4471 5191 1.006102 CGTGAACTCCTCAGGCGTT 60.006 57.895 0.00 0.00 33.60 4.84
4528 5248 1.127951 GGAAACACCGACATTGTAGCG 59.872 52.381 0.00 0.00 0.00 4.26
4609 7861 2.166254 ACAAAGGGAACAACAAGCACAG 59.834 45.455 0.00 0.00 0.00 3.66
4618 7870 4.991776 TGATATGGACACAAAGGGAACAA 58.008 39.130 0.00 0.00 0.00 2.83
5108 8776 0.815734 GCTGTCATTCTGCCTGCATT 59.184 50.000 0.00 0.00 35.43 3.56
5230 8960 2.331451 GTCTTGGTTGCGGTGCAC 59.669 61.111 8.80 8.80 38.71 4.57
5298 9028 1.093972 CGGCCAGTTCATTACATGCA 58.906 50.000 2.24 0.00 0.00 3.96
5300 9030 1.064505 CAGCGGCCAGTTCATTACATG 59.935 52.381 2.24 0.00 0.00 3.21
5314 9044 2.768503 TTTCAATGGCTTGCAGCGGC 62.769 55.000 0.31 0.31 43.62 6.53
5317 9047 0.320073 TGCTTTCAATGGCTTGCAGC 60.320 50.000 0.11 0.11 41.46 5.25
5325 9075 3.758023 TGGAGTGTGTATGCTTTCAATGG 59.242 43.478 0.00 0.00 0.00 3.16
5330 9080 3.059352 AGGTGGAGTGTGTATGCTTTC 57.941 47.619 0.00 0.00 0.00 2.62
5335 9085 6.094048 CCAATAAGAAAGGTGGAGTGTGTATG 59.906 42.308 0.00 0.00 32.54 2.39
5344 9094 5.714806 GGAATCAACCAATAAGAAAGGTGGA 59.285 40.000 0.00 0.00 39.58 4.02
5351 9101 9.753674 ATGAGTAAAGGAATCAACCAATAAGAA 57.246 29.630 0.00 0.00 0.00 2.52
5362 9112 8.231692 TGTTTTTGACATGAGTAAAGGAATCA 57.768 30.769 0.00 0.00 32.00 2.57
5373 9123 7.138736 ACCTCGTTTATTGTTTTTGACATGAG 58.861 34.615 0.00 0.00 38.26 2.90
5379 9129 8.895737 AGTTCTTACCTCGTTTATTGTTTTTGA 58.104 29.630 0.00 0.00 0.00 2.69
5393 9143 2.858344 CGGTGCATTAGTTCTTACCTCG 59.142 50.000 0.00 0.00 0.00 4.63
5399 9149 2.504367 AGTTGCGGTGCATTAGTTCTT 58.496 42.857 0.00 0.00 38.76 2.52
5400 9150 2.185004 AGTTGCGGTGCATTAGTTCT 57.815 45.000 0.00 0.00 38.76 3.01
5404 9154 2.742053 ACACTTAGTTGCGGTGCATTAG 59.258 45.455 0.00 0.00 38.76 1.73
5413 9163 7.908193 AATACTTTCAAAACACTTAGTTGCG 57.092 32.000 0.00 0.00 41.19 4.85
5446 9196 7.776969 TCCGTCTAGGTGTATAAGTCACTTTAT 59.223 37.037 0.00 0.00 41.99 1.40
5450 9200 5.108187 TCCGTCTAGGTGTATAAGTCACT 57.892 43.478 0.00 0.00 41.99 3.41
5463 9213 4.500035 GCATTTCTACTTCCTCCGTCTAGG 60.500 50.000 0.00 0.00 42.97 3.02
5526 9279 7.030768 GCAAATTTAACTTAAATACCAGGCGA 58.969 34.615 7.11 0.00 37.39 5.54
5529 9282 7.816995 TGCTGCAAATTTAACTTAAATACCAGG 59.183 33.333 18.59 0.00 37.39 4.45
5609 9364 6.427242 CAGGAGATGACATCTTGATTATGTGG 59.573 42.308 18.89 0.00 40.38 4.17
5636 9391 3.005897 CCTCCTAATGTATGCTGTAGCGT 59.994 47.826 3.83 3.83 45.83 5.07
5650 9407 4.482025 TGGACCATCATTTTCCCTCCTAAT 59.518 41.667 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.