Multiple sequence alignment - TraesCS7B01G274300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G274300 chr7B 100.000 3161 0 0 1 3161 503495167 503498327 0.000000e+00 5838.0
1 TraesCS7B01G274300 chr7B 81.429 350 63 2 1606 1954 504244008 504243660 5.160000e-73 285.0
2 TraesCS7B01G274300 chr7D 91.438 1822 66 27 386 2170 478332668 478334436 0.000000e+00 2418.0
3 TraesCS7B01G274300 chr7D 78.099 484 94 10 1685 2159 478335694 478336174 2.380000e-76 296.0
4 TraesCS7B01G274300 chr7D 77.218 496 101 12 1608 2097 478576341 478576830 2.400000e-71 279.0
5 TraesCS7B01G274300 chr7D 84.118 170 9 8 2467 2635 478334689 478334841 7.060000e-32 148.0
6 TraesCS7B01G274300 chr7A 88.707 1709 123 37 509 2180 516990766 516989091 0.000000e+00 2023.0
7 TraesCS7B01G274300 chr7A 97.576 330 8 0 1 330 679160115 679159786 1.650000e-157 566.0
8 TraesCS7B01G274300 chr7A 79.201 851 148 22 1324 2152 517414494 517413651 5.920000e-157 564.0
9 TraesCS7B01G274300 chr7A 94.413 358 20 0 1 358 597472354 597472711 4.610000e-153 551.0
10 TraesCS7B01G274300 chr7A 79.125 297 29 13 2885 3161 516920695 516920412 1.170000e-39 174.0
11 TraesCS7B01G274300 chr7A 80.137 146 23 6 1082 1224 515199446 515199588 1.550000e-18 104.0
12 TraesCS7B01G274300 chr7A 87.640 89 11 0 2549 2637 516988931 516988843 1.550000e-18 104.0
13 TraesCS7B01G274300 chr3B 98.281 349 6 0 1 349 201349546 201349198 2.080000e-171 612.0
14 TraesCS7B01G274300 chr6B 98.276 348 6 0 1 348 640575048 640575395 7.500000e-171 610.0
15 TraesCS7B01G274300 chr6B 74.390 410 87 13 1752 2149 42004975 42004572 3.260000e-35 159.0
16 TraesCS7B01G274300 chr6B 81.757 148 23 4 1079 1224 173391764 173391909 1.540000e-23 121.0
17 TraesCS7B01G274300 chr4A 98.006 351 6 1 1 350 595420784 595421134 2.700000e-170 608.0
18 TraesCS7B01G274300 chr4A 97.135 349 9 1 1 348 606793561 606793909 3.510000e-164 588.0
19 TraesCS7B01G274300 chr4B 97.701 348 8 0 1 348 551260412 551260065 1.620000e-167 599.0
20 TraesCS7B01G274300 chr5B 96.667 330 11 0 1 330 226431219 226431548 1.660000e-152 549.0
21 TraesCS7B01G274300 chr5B 77.857 140 23 8 1095 1230 428963274 428963139 2.610000e-11 80.5
22 TraesCS7B01G274300 chr5A 94.000 350 20 1 1 350 452435303 452434955 2.160000e-146 529.0
23 TraesCS7B01G274300 chr5A 78.571 140 22 8 1095 1230 463766006 463765871 5.620000e-13 86.1
24 TraesCS7B01G274300 chr6D 74.328 409 89 12 1752 2149 25804305 25803902 3.260000e-35 159.0
25 TraesCS7B01G274300 chr6D 74.396 414 87 16 1112 1520 90922738 90923137 3.260000e-35 159.0
26 TraesCS7B01G274300 chr6A 73.499 483 102 19 1631 2097 23896068 23895596 3.260000e-35 159.0
27 TraesCS7B01G274300 chr6A 74.092 413 90 15 1112 1520 109135760 109136159 1.520000e-33 154.0
28 TraesCS7B01G274300 chr5D 77.857 140 23 8 1095 1230 362664903 362664768 2.610000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G274300 chr7B 503495167 503498327 3160 False 5838.0 5838 100.000000 1 3161 1 chr7B.!!$F1 3160
1 TraesCS7B01G274300 chr7D 478332668 478336174 3506 False 954.0 2418 84.551667 386 2635 3 chr7D.!!$F2 2249
2 TraesCS7B01G274300 chr7A 516988843 516990766 1923 True 1063.5 2023 88.173500 509 2637 2 chr7A.!!$R4 2128
3 TraesCS7B01G274300 chr7A 517413651 517414494 843 True 564.0 564 79.201000 1324 2152 1 chr7A.!!$R2 828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.028642 AAGGTAGGGGATGGAGGCAT 60.029 55.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2247 2382 0.106708 TGATTATCAGTCAGGCCGCC 59.893 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.181367 GCGATGGAGCTTGTGGTG 58.819 61.111 0.00 0.00 0.00 4.17
18 19 2.401766 GCGATGGAGCTTGTGGTGG 61.402 63.158 0.00 0.00 0.00 4.61
19 20 2.401766 CGATGGAGCTTGTGGTGGC 61.402 63.158 0.00 0.00 0.00 5.01
20 21 2.036256 ATGGAGCTTGTGGTGGCC 59.964 61.111 0.00 0.00 0.00 5.36
21 22 3.590466 ATGGAGCTTGTGGTGGCCC 62.590 63.158 0.00 0.00 0.00 5.80
22 23 4.284550 GGAGCTTGTGGTGGCCCA 62.285 66.667 0.00 0.00 38.87 5.36
23 24 2.674380 GAGCTTGTGGTGGCCCAG 60.674 66.667 0.00 0.00 42.94 4.45
24 25 3.497884 GAGCTTGTGGTGGCCCAGT 62.498 63.158 0.00 0.00 42.94 4.00
25 26 2.985847 GCTTGTGGTGGCCCAGTC 60.986 66.667 0.00 0.00 42.94 3.51
26 27 2.669569 CTTGTGGTGGCCCAGTCG 60.670 66.667 0.00 0.00 42.94 4.18
27 28 4.947147 TTGTGGTGGCCCAGTCGC 62.947 66.667 0.00 0.00 42.94 5.19
49 50 4.548513 CGGGAGGAGGAGGAGGGG 62.549 77.778 0.00 0.00 0.00 4.79
50 51 3.036959 GGGAGGAGGAGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
51 52 2.612251 GGAGGAGGAGGAGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
52 53 2.612251 GAGGAGGAGGAGGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
53 54 3.039526 AGGAGGAGGAGGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
54 55 4.179599 GGAGGAGGAGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
55 56 3.036959 GAGGAGGAGGGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
56 57 2.289979 AGGAGGAGGGGAGGGGAT 60.290 66.667 0.00 0.00 0.00 3.85
57 58 2.122189 GGAGGAGGGGAGGGGATG 60.122 72.222 0.00 0.00 0.00 3.51
58 59 2.851588 GAGGAGGGGAGGGGATGC 60.852 72.222 0.00 0.00 0.00 3.91
59 60 4.888325 AGGAGGGGAGGGGATGCG 62.888 72.222 0.00 0.00 0.00 4.73
70 71 3.880846 GGATGCGCGCCCTTGAAG 61.881 66.667 30.77 0.00 0.00 3.02
71 72 3.880846 GATGCGCGCCCTTGAAGG 61.881 66.667 30.77 3.69 34.30 3.46
82 83 3.268023 CCCTTGAAGGCTGTAGGTTAG 57.732 52.381 5.50 0.00 32.73 2.34
83 84 2.092914 CCCTTGAAGGCTGTAGGTTAGG 60.093 54.545 5.50 0.00 32.73 2.69
84 85 2.092914 CCTTGAAGGCTGTAGGTTAGGG 60.093 54.545 0.00 0.00 0.00 3.53
85 86 2.634639 TGAAGGCTGTAGGTTAGGGA 57.365 50.000 0.00 0.00 0.00 4.20
86 87 3.130734 TGAAGGCTGTAGGTTAGGGAT 57.869 47.619 0.00 0.00 0.00 3.85
87 88 2.771943 TGAAGGCTGTAGGTTAGGGATG 59.228 50.000 0.00 0.00 0.00 3.51
88 89 1.807814 AGGCTGTAGGTTAGGGATGG 58.192 55.000 0.00 0.00 0.00 3.51
89 90 1.294068 AGGCTGTAGGTTAGGGATGGA 59.706 52.381 0.00 0.00 0.00 3.41
90 91 2.089925 AGGCTGTAGGTTAGGGATGGAT 60.090 50.000 0.00 0.00 0.00 3.41
91 92 2.303311 GGCTGTAGGTTAGGGATGGATC 59.697 54.545 0.00 0.00 0.00 3.36
92 93 3.243724 GCTGTAGGTTAGGGATGGATCT 58.756 50.000 0.00 0.00 0.00 2.75
93 94 3.007398 GCTGTAGGTTAGGGATGGATCTG 59.993 52.174 0.00 0.00 0.00 2.90
94 95 3.580458 CTGTAGGTTAGGGATGGATCTGG 59.420 52.174 0.00 0.00 0.00 3.86
95 96 1.439543 AGGTTAGGGATGGATCTGGC 58.560 55.000 0.00 0.00 0.00 4.85
96 97 0.402121 GGTTAGGGATGGATCTGGCC 59.598 60.000 0.00 0.00 0.00 5.36
97 98 1.140312 GTTAGGGATGGATCTGGCCA 58.860 55.000 4.71 4.71 43.23 5.36
104 105 0.178998 ATGGATCTGGCCATGACAGC 60.179 55.000 5.51 0.00 46.62 4.40
105 106 1.225426 GGATCTGGCCATGACAGCA 59.775 57.895 5.51 3.42 38.81 4.41
106 107 0.818445 GGATCTGGCCATGACAGCAG 60.818 60.000 5.51 0.00 38.81 4.24
107 108 0.818445 GATCTGGCCATGACAGCAGG 60.818 60.000 5.51 0.00 38.81 4.85
178 179 4.452733 CCGCCGGTGAGGGAGTTC 62.453 72.222 18.79 0.00 41.48 3.01
179 180 4.796231 CGCCGGTGAGGGAGTTCG 62.796 72.222 10.20 0.00 41.48 3.95
180 181 3.692406 GCCGGTGAGGGAGTTCGT 61.692 66.667 1.90 0.00 41.48 3.85
181 182 2.261671 CCGGTGAGGGAGTTCGTG 59.738 66.667 0.00 0.00 35.97 4.35
182 183 2.261671 CGGTGAGGGAGTTCGTGG 59.738 66.667 0.00 0.00 0.00 4.94
183 184 2.273179 CGGTGAGGGAGTTCGTGGA 61.273 63.158 0.00 0.00 0.00 4.02
184 185 1.592223 GGTGAGGGAGTTCGTGGAG 59.408 63.158 0.00 0.00 0.00 3.86
185 186 1.592223 GTGAGGGAGTTCGTGGAGG 59.408 63.158 0.00 0.00 0.00 4.30
186 187 2.283529 TGAGGGAGTTCGTGGAGGC 61.284 63.158 0.00 0.00 0.00 4.70
187 188 3.003763 AGGGAGTTCGTGGAGGCC 61.004 66.667 0.00 0.00 0.00 5.19
188 189 4.097361 GGGAGTTCGTGGAGGCCC 62.097 72.222 0.00 0.00 0.00 5.80
189 190 3.319198 GGAGTTCGTGGAGGCCCA 61.319 66.667 0.00 0.00 40.95 5.36
190 191 2.266055 GAGTTCGTGGAGGCCCAG 59.734 66.667 0.00 0.00 44.55 4.45
191 192 2.526873 AGTTCGTGGAGGCCCAGT 60.527 61.111 0.00 0.00 44.55 4.00
192 193 2.047179 GTTCGTGGAGGCCCAGTC 60.047 66.667 0.00 0.00 44.55 3.51
193 194 3.691342 TTCGTGGAGGCCCAGTCG 61.691 66.667 0.00 0.00 44.55 4.18
196 197 4.767255 GTGGAGGCCCAGTCGCAG 62.767 72.222 0.00 0.00 44.55 5.18
199 200 4.828925 GAGGCCCAGTCGCAGCTC 62.829 72.222 0.00 0.00 0.00 4.09
232 233 3.545481 CGCGCACGTAGGCTGAAG 61.545 66.667 8.75 0.00 33.53 3.02
233 234 3.188786 GCGCACGTAGGCTGAAGG 61.189 66.667 0.30 0.00 0.00 3.46
234 235 2.261671 CGCACGTAGGCTGAAGGT 59.738 61.111 0.00 0.00 0.00 3.50
235 236 1.509463 CGCACGTAGGCTGAAGGTA 59.491 57.895 0.00 0.00 0.00 3.08
236 237 0.525668 CGCACGTAGGCTGAAGGTAG 60.526 60.000 0.00 0.00 0.00 3.18
237 238 0.179108 GCACGTAGGCTGAAGGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
238 239 0.460311 CACGTAGGCTGAAGGTAGGG 59.540 60.000 0.00 0.00 0.00 3.53
239 240 0.686769 ACGTAGGCTGAAGGTAGGGG 60.687 60.000 0.00 0.00 0.00 4.79
240 241 0.396695 CGTAGGCTGAAGGTAGGGGA 60.397 60.000 0.00 0.00 0.00 4.81
241 242 1.758123 CGTAGGCTGAAGGTAGGGGAT 60.758 57.143 0.00 0.00 0.00 3.85
242 243 1.694696 GTAGGCTGAAGGTAGGGGATG 59.305 57.143 0.00 0.00 0.00 3.51
243 244 0.695803 AGGCTGAAGGTAGGGGATGG 60.696 60.000 0.00 0.00 0.00 3.51
244 245 0.694444 GGCTGAAGGTAGGGGATGGA 60.694 60.000 0.00 0.00 0.00 3.41
245 246 0.761802 GCTGAAGGTAGGGGATGGAG 59.238 60.000 0.00 0.00 0.00 3.86
246 247 1.428869 CTGAAGGTAGGGGATGGAGG 58.571 60.000 0.00 0.00 0.00 4.30
247 248 0.694444 TGAAGGTAGGGGATGGAGGC 60.694 60.000 0.00 0.00 0.00 4.70
248 249 0.694444 GAAGGTAGGGGATGGAGGCA 60.694 60.000 0.00 0.00 0.00 4.75
249 250 0.028642 AAGGTAGGGGATGGAGGCAT 60.029 55.000 0.00 0.00 0.00 4.40
250 251 0.769776 AGGTAGGGGATGGAGGCATG 60.770 60.000 0.00 0.00 0.00 4.06
251 252 1.062488 GGTAGGGGATGGAGGCATGT 61.062 60.000 0.00 0.00 0.00 3.21
252 253 1.729586 GTAGGGGATGGAGGCATGTA 58.270 55.000 0.00 0.00 0.00 2.29
253 254 2.054799 GTAGGGGATGGAGGCATGTAA 58.945 52.381 0.00 0.00 0.00 2.41
254 255 1.143813 AGGGGATGGAGGCATGTAAG 58.856 55.000 0.00 0.00 0.00 2.34
255 256 1.140312 GGGGATGGAGGCATGTAAGA 58.860 55.000 0.00 0.00 0.00 2.10
256 257 1.494721 GGGGATGGAGGCATGTAAGAA 59.505 52.381 0.00 0.00 0.00 2.52
257 258 2.091885 GGGGATGGAGGCATGTAAGAAA 60.092 50.000 0.00 0.00 0.00 2.52
258 259 3.217626 GGGATGGAGGCATGTAAGAAAG 58.782 50.000 0.00 0.00 0.00 2.62
259 260 3.217626 GGATGGAGGCATGTAAGAAAGG 58.782 50.000 0.00 0.00 0.00 3.11
260 261 3.117888 GGATGGAGGCATGTAAGAAAGGA 60.118 47.826 0.00 0.00 0.00 3.36
261 262 3.634397 TGGAGGCATGTAAGAAAGGAG 57.366 47.619 0.00 0.00 0.00 3.69
262 263 2.239654 TGGAGGCATGTAAGAAAGGAGG 59.760 50.000 0.00 0.00 0.00 4.30
263 264 2.293170 GAGGCATGTAAGAAAGGAGGC 58.707 52.381 0.00 0.00 0.00 4.70
264 265 1.017387 GGCATGTAAGAAAGGAGGCG 58.983 55.000 0.00 0.00 0.00 5.52
265 266 1.017387 GCATGTAAGAAAGGAGGCGG 58.983 55.000 0.00 0.00 0.00 6.13
266 267 1.668419 CATGTAAGAAAGGAGGCGGG 58.332 55.000 0.00 0.00 0.00 6.13
267 268 0.546598 ATGTAAGAAAGGAGGCGGGG 59.453 55.000 0.00 0.00 0.00 5.73
268 269 0.545787 TGTAAGAAAGGAGGCGGGGA 60.546 55.000 0.00 0.00 0.00 4.81
269 270 0.837940 GTAAGAAAGGAGGCGGGGAT 59.162 55.000 0.00 0.00 0.00 3.85
270 271 1.129058 TAAGAAAGGAGGCGGGGATC 58.871 55.000 0.00 0.00 0.00 3.36
271 272 0.914417 AAGAAAGGAGGCGGGGATCA 60.914 55.000 0.00 0.00 0.00 2.92
272 273 1.153147 GAAAGGAGGCGGGGATCAC 60.153 63.158 0.00 0.00 0.00 3.06
273 274 2.925162 GAAAGGAGGCGGGGATCACG 62.925 65.000 4.85 4.85 0.00 4.35
338 339 2.635338 GGTGTGCCGACGGAAAAC 59.365 61.111 20.50 13.37 0.00 2.43
354 355 6.673154 CGGAAAACGTTTCCCTTTATCTAT 57.327 37.500 14.77 0.00 37.93 1.98
355 356 7.080353 CGGAAAACGTTTCCCTTTATCTATT 57.920 36.000 14.77 0.00 37.93 1.73
356 357 8.200364 CGGAAAACGTTTCCCTTTATCTATTA 57.800 34.615 14.77 0.00 37.93 0.98
357 358 8.333186 CGGAAAACGTTTCCCTTTATCTATTAG 58.667 37.037 14.77 0.00 37.93 1.73
358 359 8.618677 GGAAAACGTTTCCCTTTATCTATTAGG 58.381 37.037 15.01 0.00 32.48 2.69
359 360 9.170734 GAAAACGTTTCCCTTTATCTATTAGGT 57.829 33.333 15.01 0.00 0.00 3.08
360 361 9.524496 AAAACGTTTCCCTTTATCTATTAGGTT 57.476 29.630 15.01 0.00 0.00 3.50
361 362 8.502105 AACGTTTCCCTTTATCTATTAGGTTG 57.498 34.615 0.00 0.00 0.00 3.77
362 363 6.541278 ACGTTTCCCTTTATCTATTAGGTTGC 59.459 38.462 0.00 0.00 0.00 4.17
363 364 6.540914 CGTTTCCCTTTATCTATTAGGTTGCA 59.459 38.462 0.00 0.00 0.00 4.08
364 365 7.228706 CGTTTCCCTTTATCTATTAGGTTGCAT 59.771 37.037 0.00 0.00 0.00 3.96
365 366 8.352942 GTTTCCCTTTATCTATTAGGTTGCATG 58.647 37.037 0.00 0.00 0.00 4.06
366 367 7.149202 TCCCTTTATCTATTAGGTTGCATGT 57.851 36.000 0.00 0.00 0.00 3.21
367 368 7.582719 TCCCTTTATCTATTAGGTTGCATGTT 58.417 34.615 0.00 0.00 0.00 2.71
368 369 8.058847 TCCCTTTATCTATTAGGTTGCATGTTT 58.941 33.333 0.00 0.00 0.00 2.83
369 370 8.137437 CCCTTTATCTATTAGGTTGCATGTTTG 58.863 37.037 0.00 0.00 0.00 2.93
370 371 8.902806 CCTTTATCTATTAGGTTGCATGTTTGA 58.097 33.333 0.00 0.00 0.00 2.69
371 372 9.941664 CTTTATCTATTAGGTTGCATGTTTGAG 57.058 33.333 0.00 0.00 0.00 3.02
372 373 9.461312 TTTATCTATTAGGTTGCATGTTTGAGT 57.539 29.630 0.00 0.00 0.00 3.41
378 379 8.807948 ATTAGGTTGCATGTTTGAGTATAAGT 57.192 30.769 0.00 0.00 0.00 2.24
379 380 8.630054 TTAGGTTGCATGTTTGAGTATAAGTT 57.370 30.769 0.00 0.00 0.00 2.66
380 381 7.524717 AGGTTGCATGTTTGAGTATAAGTTT 57.475 32.000 0.00 0.00 0.00 2.66
381 382 7.370383 AGGTTGCATGTTTGAGTATAAGTTTG 58.630 34.615 0.00 0.00 0.00 2.93
382 383 7.230510 AGGTTGCATGTTTGAGTATAAGTTTGA 59.769 33.333 0.00 0.00 0.00 2.69
383 384 7.538678 GGTTGCATGTTTGAGTATAAGTTTGAG 59.461 37.037 0.00 0.00 0.00 3.02
384 385 7.144722 TGCATGTTTGAGTATAAGTTTGAGG 57.855 36.000 0.00 0.00 0.00 3.86
402 403 1.375523 GTTGCATCCCGGACTCGTT 60.376 57.895 0.73 0.00 33.95 3.85
417 418 2.871022 ACTCGTTCGCAGACGTATAGAT 59.129 45.455 8.46 0.00 41.18 1.98
419 420 2.032290 TCGTTCGCAGACGTATAGATGG 60.032 50.000 8.46 0.00 41.18 3.51
423 424 1.399855 CGCAGACGTATAGATGGACGG 60.400 57.143 0.00 0.00 43.32 4.79
428 429 5.629097 CAGACGTATAGATGGACGGATTAC 58.371 45.833 0.00 0.00 43.32 1.89
457 458 5.293560 GTCTGGCTCTAATTAGGCTTACAG 58.706 45.833 19.09 17.39 42.33 2.74
506 507 0.620556 ATCAATCGAAGGCACCCACT 59.379 50.000 0.00 0.00 0.00 4.00
771 788 0.395311 CTCTCAAGGCCACCATGCAT 60.395 55.000 5.01 0.00 0.00 3.96
825 853 2.973155 GCTACGTGCGTTCAGATTAC 57.027 50.000 1.66 0.00 0.00 1.89
838 868 5.739630 CGTTCAGATTACTAGCACAGTACTG 59.260 44.000 21.44 21.44 39.52 2.74
849 879 2.732597 GCACAGTACTGAGACGATCACC 60.733 54.545 29.30 2.44 33.22 4.02
872 909 4.342987 CAGCGGCCGAGCGCTATA 62.343 66.667 33.48 0.00 43.00 1.31
908 945 0.897863 AGCGTCTCTCTCTGCCACTT 60.898 55.000 0.00 0.00 0.00 3.16
915 952 2.187946 CTCTGCCACTTAGCCCGG 59.812 66.667 0.00 0.00 0.00 5.73
990 1027 1.516892 GCTGACTGAGCTGAGAGGG 59.483 63.158 7.36 0.00 45.21 4.30
991 1028 1.516892 CTGACTGAGCTGAGAGGGC 59.483 63.158 7.36 0.00 0.00 5.19
992 1029 1.958902 CTGACTGAGCTGAGAGGGCC 61.959 65.000 7.36 0.00 0.00 5.80
1048 1085 4.742201 TTGTCGCTGCCGCTCTCC 62.742 66.667 0.00 0.00 0.00 3.71
1050 1087 4.863925 GTCGCTGCCGCTCTCCTC 62.864 72.222 0.00 0.00 0.00 3.71
1052 1089 4.869440 CGCTGCCGCTCTCCTCTG 62.869 72.222 0.00 0.00 0.00 3.35
1053 1090 4.527583 GCTGCCGCTCTCCTCTGG 62.528 72.222 0.00 0.00 0.00 3.86
1293 1336 6.956202 AGCTCCCTGAGATTGATTAAATTG 57.044 37.500 0.00 0.00 0.00 2.32
1317 1360 0.385473 GCGTGCGTATGCTTGTTTGT 60.385 50.000 10.72 0.00 43.34 2.83
1318 1361 1.924191 GCGTGCGTATGCTTGTTTGTT 60.924 47.619 10.72 0.00 43.34 2.83
1319 1362 1.969256 CGTGCGTATGCTTGTTTGTTC 59.031 47.619 8.69 0.00 43.34 3.18
1320 1363 1.969256 GTGCGTATGCTTGTTTGTTCG 59.031 47.619 8.69 0.00 43.34 3.95
1321 1364 0.974836 GCGTATGCTTGTTTGTTCGC 59.025 50.000 0.00 0.00 38.39 4.70
1322 1365 1.602191 CGTATGCTTGTTTGTTCGCC 58.398 50.000 0.00 0.00 0.00 5.54
1403 1446 2.094659 CGGCGCGAATGTCAACTCT 61.095 57.895 12.10 0.00 0.00 3.24
1567 1619 5.162075 GGTAATACCTTATACAGCTCGCAG 58.838 45.833 1.41 0.00 34.73 5.18
1573 1625 3.254060 CTTATACAGCTCGCAGTGTGTT 58.746 45.455 3.13 0.00 0.00 3.32
1574 1626 2.169832 ATACAGCTCGCAGTGTGTTT 57.830 45.000 3.13 0.00 0.00 2.83
1575 1627 1.217001 TACAGCTCGCAGTGTGTTTG 58.783 50.000 3.13 3.79 0.00 2.93
1576 1628 1.369689 CAGCTCGCAGTGTGTTTGC 60.370 57.895 3.13 7.19 38.18 3.68
1577 1629 1.524621 AGCTCGCAGTGTGTTTGCT 60.525 52.632 3.13 9.25 39.38 3.91
1578 1630 0.249868 AGCTCGCAGTGTGTTTGCTA 60.250 50.000 15.68 0.00 39.38 3.49
1579 1631 0.586319 GCTCGCAGTGTGTTTGCTAA 59.414 50.000 3.13 0.00 39.38 3.09
1580 1632 1.398960 GCTCGCAGTGTGTTTGCTAAG 60.399 52.381 3.13 0.00 39.38 2.18
1581 1633 1.867233 CTCGCAGTGTGTTTGCTAAGT 59.133 47.619 3.13 0.00 39.38 2.24
1602 1654 1.629013 CTGACGCGAAGTAATCTGCA 58.371 50.000 15.93 0.00 0.00 4.41
2097 2208 1.217057 AGGCCATGGTCAAGATGGGT 61.217 55.000 20.74 0.00 40.80 4.51
2163 2274 3.009143 ACTGCAGGAAGGTTAACTAAGGG 59.991 47.826 19.93 0.00 0.00 3.95
2171 2282 5.942236 GGAAGGTTAACTAAGGGTGGTTAAG 59.058 44.000 5.42 0.00 40.22 1.85
2180 2291 1.285078 AGGGTGGTTAAGGATTGCCTC 59.715 52.381 0.00 0.00 46.28 4.70
2181 2292 1.005450 GGGTGGTTAAGGATTGCCTCA 59.995 52.381 0.00 0.00 46.28 3.86
2182 2293 2.092323 GGTGGTTAAGGATTGCCTCAC 58.908 52.381 0.00 0.00 46.28 3.51
2183 2294 1.737793 GTGGTTAAGGATTGCCTCACG 59.262 52.381 0.00 0.00 46.28 4.35
2184 2295 1.626321 TGGTTAAGGATTGCCTCACGA 59.374 47.619 0.00 0.00 46.28 4.35
2185 2296 2.039216 TGGTTAAGGATTGCCTCACGAA 59.961 45.455 0.00 0.00 46.28 3.85
2186 2297 2.418976 GGTTAAGGATTGCCTCACGAAC 59.581 50.000 0.00 0.00 46.28 3.95
2199 2330 3.121279 CCTCACGAACTTAACATCACACG 59.879 47.826 0.00 0.00 0.00 4.49
2200 2331 3.708890 TCACGAACTTAACATCACACGT 58.291 40.909 0.00 0.00 0.00 4.49
2202 2333 5.463286 TCACGAACTTAACATCACACGTAT 58.537 37.500 0.00 0.00 0.00 3.06
2208 2343 7.844169 CGAACTTAACATCACACGTATTTATGG 59.156 37.037 0.00 0.00 0.00 2.74
2220 2355 3.496884 CGTATTTATGGGATTGTGACCGG 59.503 47.826 0.00 0.00 0.00 5.28
2237 2372 2.258591 GCTGACGCGAACAGGAGA 59.741 61.111 27.64 3.58 36.09 3.71
2243 2378 3.444916 TGACGCGAACAGGAGAATTATC 58.555 45.455 15.93 0.00 0.00 1.75
2244 2379 2.795470 GACGCGAACAGGAGAATTATCC 59.205 50.000 15.93 11.33 39.89 2.59
2252 2387 1.239347 GGAGAATTATCCTTGGCGGC 58.761 55.000 12.00 0.00 36.35 6.53
2253 2388 1.239347 GAGAATTATCCTTGGCGGCC 58.761 55.000 13.32 13.32 0.00 6.13
2254 2389 0.846693 AGAATTATCCTTGGCGGCCT 59.153 50.000 21.46 1.18 0.00 5.19
2255 2390 0.954452 GAATTATCCTTGGCGGCCTG 59.046 55.000 21.46 12.70 0.00 4.85
2256 2391 0.550914 AATTATCCTTGGCGGCCTGA 59.449 50.000 21.46 14.12 0.00 3.86
2257 2392 0.179018 ATTATCCTTGGCGGCCTGAC 60.179 55.000 21.46 0.00 0.00 3.51
2258 2393 1.271840 TTATCCTTGGCGGCCTGACT 61.272 55.000 21.46 3.87 0.00 3.41
2259 2394 1.971505 TATCCTTGGCGGCCTGACTG 61.972 60.000 21.46 4.51 0.00 3.51
2260 2395 4.020617 CCTTGGCGGCCTGACTGA 62.021 66.667 21.46 0.00 0.00 3.41
2266 2401 0.106708 GGCGGCCTGACTGATAATCA 59.893 55.000 12.87 0.00 0.00 2.57
2283 2418 8.997621 TGATAATCAGGTTGTGTAGTTAGTTC 57.002 34.615 0.00 0.00 0.00 3.01
2285 2420 9.303537 GATAATCAGGTTGTGTAGTTAGTTCTC 57.696 37.037 0.00 0.00 0.00 2.87
2286 2421 6.665992 ATCAGGTTGTGTAGTTAGTTCTCA 57.334 37.500 0.00 0.00 0.00 3.27
2289 2424 4.344102 AGGTTGTGTAGTTAGTTCTCAGCA 59.656 41.667 0.00 0.00 0.00 4.41
2290 2425 4.686554 GGTTGTGTAGTTAGTTCTCAGCAG 59.313 45.833 0.00 0.00 0.00 4.24
2291 2426 4.521130 TGTGTAGTTAGTTCTCAGCAGG 57.479 45.455 0.00 0.00 0.00 4.85
2292 2427 4.149598 TGTGTAGTTAGTTCTCAGCAGGA 58.850 43.478 0.00 0.00 0.00 3.86
2338 2506 5.815233 TTTCTGACTGAAACAGAGGAGAT 57.185 39.130 5.76 0.00 43.67 2.75
2339 2507 5.815233 TTCTGACTGAAACAGAGGAGATT 57.185 39.130 5.76 0.00 43.67 2.40
2340 2508 6.918067 TTCTGACTGAAACAGAGGAGATTA 57.082 37.500 5.76 0.00 43.67 1.75
2341 2509 6.522625 TCTGACTGAAACAGAGGAGATTAG 57.477 41.667 5.76 0.00 39.10 1.73
2342 2510 6.013379 TCTGACTGAAACAGAGGAGATTAGT 58.987 40.000 5.76 0.00 39.10 2.24
2343 2511 7.175797 TCTGACTGAAACAGAGGAGATTAGTA 58.824 38.462 5.76 0.00 39.10 1.82
2344 2512 7.836685 TCTGACTGAAACAGAGGAGATTAGTAT 59.163 37.037 5.76 0.00 39.10 2.12
2345 2513 9.126151 CTGACTGAAACAGAGGAGATTAGTATA 57.874 37.037 5.76 0.00 37.54 1.47
2346 2514 9.126151 TGACTGAAACAGAGGAGATTAGTATAG 57.874 37.037 5.76 0.00 35.18 1.31
2347 2515 9.127277 GACTGAAACAGAGGAGATTAGTATAGT 57.873 37.037 5.76 0.00 35.18 2.12
2352 2520 9.577222 AAACAGAGGAGATTAGTATAGTACTCC 57.423 37.037 13.10 13.10 42.64 3.85
2353 2521 8.277720 ACAGAGGAGATTAGTATAGTACTCCA 57.722 38.462 19.30 0.00 44.11 3.86
2354 2522 8.896658 ACAGAGGAGATTAGTATAGTACTCCAT 58.103 37.037 19.30 9.75 44.11 3.41
2355 2523 9.173021 CAGAGGAGATTAGTATAGTACTCCATG 57.827 40.741 19.30 15.03 44.11 3.66
2356 2524 8.896658 AGAGGAGATTAGTATAGTACTCCATGT 58.103 37.037 19.30 5.94 44.11 3.21
2393 2561 9.507329 AAGACATTTTATTGACACAGTCATAGT 57.493 29.630 0.12 0.00 42.40 2.12
2394 2562 8.939929 AGACATTTTATTGACACAGTCATAGTG 58.060 33.333 0.12 0.00 42.40 2.74
2424 2592 9.838339 AAAAAGGTCTTACATATGATACAGAGG 57.162 33.333 10.38 0.00 0.00 3.69
2425 2593 8.554490 AAAGGTCTTACATATGATACAGAGGT 57.446 34.615 10.38 0.00 0.00 3.85
2426 2594 9.656323 AAAGGTCTTACATATGATACAGAGGTA 57.344 33.333 10.38 0.00 0.00 3.08
2427 2595 8.871629 AGGTCTTACATATGATACAGAGGTAG 57.128 38.462 10.38 0.00 31.88 3.18
2428 2596 8.449625 AGGTCTTACATATGATACAGAGGTAGT 58.550 37.037 10.38 0.00 31.88 2.73
2429 2597 9.736414 GGTCTTACATATGATACAGAGGTAGTA 57.264 37.037 10.38 0.00 31.88 1.82
2437 2605 9.733556 ATATGATACAGAGGTAGTAGAAGACAG 57.266 37.037 0.00 0.00 31.88 3.51
2443 2611 7.330262 ACAGAGGTAGTAGAAGACAGTACTAC 58.670 42.308 10.04 10.04 45.87 2.73
2450 2618 7.700022 AGTAGAAGACAGTACTACCGAAAAT 57.300 36.000 0.00 0.00 37.71 1.82
2456 2624 6.100004 AGACAGTACTACCGAAAATCATGTG 58.900 40.000 0.00 0.00 0.00 3.21
2457 2625 6.032956 ACAGTACTACCGAAAATCATGTGA 57.967 37.500 0.00 0.00 0.00 3.58
2460 2628 7.606456 ACAGTACTACCGAAAATCATGTGAAAT 59.394 33.333 0.00 0.00 0.00 2.17
2465 2633 8.830580 ACTACCGAAAATCATGTGAAATGATAG 58.169 33.333 0.00 0.00 37.75 2.08
2485 2661 2.297033 AGAAAGTGAAACCGCGTACCTA 59.703 45.455 4.92 0.00 37.80 3.08
2496 2672 3.243839 ACCGCGTACCTAGAAGACAAAAA 60.244 43.478 4.92 0.00 0.00 1.94
2497 2673 3.930848 CCGCGTACCTAGAAGACAAAAAT 59.069 43.478 4.92 0.00 0.00 1.82
2499 2675 5.577945 CCGCGTACCTAGAAGACAAAAATAA 59.422 40.000 4.92 0.00 0.00 1.40
2500 2676 6.091169 CCGCGTACCTAGAAGACAAAAATAAA 59.909 38.462 4.92 0.00 0.00 1.40
2501 2677 6.952083 CGCGTACCTAGAAGACAAAAATAAAC 59.048 38.462 0.00 0.00 0.00 2.01
2502 2678 6.952083 GCGTACCTAGAAGACAAAAATAAACG 59.048 38.462 0.00 0.00 0.00 3.60
2503 2679 7.359514 GCGTACCTAGAAGACAAAAATAAACGT 60.360 37.037 0.00 0.00 0.00 3.99
2511 2687 8.592155 AGAAGACAAAAATAAACGTTTTTCAGC 58.408 29.630 20.19 2.22 38.77 4.26
2512 2688 7.820044 AGACAAAAATAAACGTTTTTCAGCA 57.180 28.000 20.19 0.00 38.77 4.41
2513 2689 8.245701 AGACAAAAATAAACGTTTTTCAGCAA 57.754 26.923 20.19 0.00 38.77 3.91
2514 2690 8.713271 AGACAAAAATAAACGTTTTTCAGCAAA 58.287 25.926 20.19 0.00 38.77 3.68
2515 2691 9.319223 GACAAAAATAAACGTTTTTCAGCAAAA 57.681 25.926 20.19 0.00 38.77 2.44
2543 2719 0.818296 ACACGAGTACATCTCCTGGC 59.182 55.000 0.00 0.00 39.84 4.85
2544 2720 0.103208 CACGAGTACATCTCCTGGCC 59.897 60.000 0.00 0.00 39.84 5.36
2545 2721 1.043673 ACGAGTACATCTCCTGGCCC 61.044 60.000 0.00 0.00 39.84 5.80
2546 2722 1.749334 CGAGTACATCTCCTGGCCCC 61.749 65.000 0.00 0.00 39.84 5.80
2547 2723 1.749334 GAGTACATCTCCTGGCCCCG 61.749 65.000 0.00 0.00 37.22 5.73
2548 2724 2.445845 TACATCTCCTGGCCCCGG 60.446 66.667 0.00 0.00 0.00 5.73
2633 2810 0.955428 CGTAGTGCACCACATTGCCT 60.955 55.000 14.63 0.00 42.25 4.75
2634 2811 0.523072 GTAGTGCACCACATTGCCTG 59.477 55.000 14.63 0.00 42.25 4.85
2635 2812 1.243342 TAGTGCACCACATTGCCTGC 61.243 55.000 14.63 0.00 42.25 4.85
2636 2813 3.672447 TGCACCACATTGCCTGCG 61.672 61.111 0.00 0.00 42.25 5.18
2637 2814 3.364441 GCACCACATTGCCTGCGA 61.364 61.111 0.00 0.00 36.42 5.10
2638 2815 2.918345 GCACCACATTGCCTGCGAA 61.918 57.895 0.00 0.00 36.42 4.70
2639 2816 1.210931 CACCACATTGCCTGCGAAG 59.789 57.895 0.00 0.00 0.00 3.79
2640 2817 1.073025 ACCACATTGCCTGCGAAGA 59.927 52.632 0.00 0.00 0.00 2.87
2641 2818 0.957395 ACCACATTGCCTGCGAAGAG 60.957 55.000 0.00 0.00 0.00 2.85
2656 2833 2.417719 GAAGAGTGGTGCTTTCATCGT 58.582 47.619 0.00 0.00 0.00 3.73
2657 2834 2.086054 AGAGTGGTGCTTTCATCGTC 57.914 50.000 0.00 0.00 0.00 4.20
2658 2835 0.716108 GAGTGGTGCTTTCATCGTCG 59.284 55.000 0.00 0.00 0.00 5.12
2659 2836 1.132640 GTGGTGCTTTCATCGTCGC 59.867 57.895 0.00 0.00 0.00 5.19
2660 2837 2.032634 TGGTGCTTTCATCGTCGCC 61.033 57.895 0.00 0.00 0.00 5.54
2661 2838 1.741770 GGTGCTTTCATCGTCGCCT 60.742 57.895 0.00 0.00 0.00 5.52
2662 2839 1.298859 GGTGCTTTCATCGTCGCCTT 61.299 55.000 0.00 0.00 0.00 4.35
2663 2840 0.179215 GTGCTTTCATCGTCGCCTTG 60.179 55.000 0.00 0.00 0.00 3.61
2664 2841 1.226128 GCTTTCATCGTCGCCTTGC 60.226 57.895 0.00 0.00 0.00 4.01
2665 2842 1.911293 GCTTTCATCGTCGCCTTGCA 61.911 55.000 0.00 0.00 0.00 4.08
2666 2843 0.516877 CTTTCATCGTCGCCTTGCAA 59.483 50.000 0.00 0.00 0.00 4.08
2667 2844 1.131126 CTTTCATCGTCGCCTTGCAAT 59.869 47.619 0.00 0.00 0.00 3.56
2668 2845 2.017138 TTCATCGTCGCCTTGCAATA 57.983 45.000 0.00 0.00 0.00 1.90
2669 2846 1.286501 TCATCGTCGCCTTGCAATAC 58.713 50.000 0.00 0.00 0.00 1.89
2670 2847 0.043053 CATCGTCGCCTTGCAATACG 60.043 55.000 13.40 13.40 32.71 3.06
2671 2848 0.459585 ATCGTCGCCTTGCAATACGT 60.460 50.000 17.51 0.00 33.05 3.57
2672 2849 1.074319 TCGTCGCCTTGCAATACGTC 61.074 55.000 17.51 12.64 33.05 4.34
2673 2850 1.343821 GTCGCCTTGCAATACGTCG 59.656 57.895 17.51 9.44 0.00 5.12
2674 2851 1.807981 TCGCCTTGCAATACGTCGG 60.808 57.895 17.51 8.19 0.00 4.79
2675 2852 2.403586 GCCTTGCAATACGTCGGC 59.596 61.111 9.12 9.12 0.00 5.54
2676 2853 3.098555 CCTTGCAATACGTCGGCC 58.901 61.111 0.00 0.00 0.00 6.13
2677 2854 2.469516 CCTTGCAATACGTCGGCCC 61.470 63.158 0.00 0.00 0.00 5.80
2702 2879 3.735591 CCCTTTCTGTCGTCAACCTTTA 58.264 45.455 0.00 0.00 0.00 1.85
2710 2887 4.905412 GTCGTCAACCTTTACTGATGAC 57.095 45.455 8.26 8.26 46.03 3.06
2715 2892 3.327757 TCAACCTTTACTGATGACCAGCT 59.672 43.478 0.00 0.00 46.81 4.24
2718 2895 2.237143 CCTTTACTGATGACCAGCTCCA 59.763 50.000 0.00 0.00 46.81 3.86
2723 2900 0.401356 TGATGACCAGCTCCAGCAAA 59.599 50.000 0.48 0.00 45.16 3.68
2724 2901 0.807496 GATGACCAGCTCCAGCAAAC 59.193 55.000 0.48 0.00 45.16 2.93
2725 2902 0.111061 ATGACCAGCTCCAGCAAACA 59.889 50.000 0.48 0.00 45.16 2.83
2726 2903 0.535780 TGACCAGCTCCAGCAAACAG 60.536 55.000 0.48 0.00 45.16 3.16
2727 2904 1.860484 GACCAGCTCCAGCAAACAGC 61.860 60.000 0.48 0.00 45.16 4.40
2744 2921 6.427150 CAAACAGCACTACGTACATTTCTTT 58.573 36.000 0.00 0.00 0.00 2.52
2746 2923 7.718272 AACAGCACTACGTACATTTCTTTAA 57.282 32.000 0.00 0.00 0.00 1.52
2765 2942 6.490040 TCTTTAACTAGCTTTGCACATTTCCT 59.510 34.615 0.00 0.00 0.00 3.36
2766 2943 6.648879 TTAACTAGCTTTGCACATTTCCTT 57.351 33.333 0.00 0.00 0.00 3.36
2776 2954 2.091541 CACATTTCCTTGGGCACGTAT 58.908 47.619 0.00 0.00 0.00 3.06
2790 2968 4.443034 GGGCACGTATCTTCTTCAGGTAAT 60.443 45.833 0.00 0.00 0.00 1.89
2794 2979 7.201145 GCACGTATCTTCTTCAGGTAATTAGA 58.799 38.462 0.00 0.00 0.00 2.10
2818 3003 2.553172 TGTAAAATCCGTTTTCCCCGTG 59.447 45.455 0.00 0.00 38.44 4.94
2834 3019 2.223377 CCCGTGAAACAGAAAGTACTGC 59.777 50.000 0.00 0.00 41.06 4.40
2836 3021 3.311322 CCGTGAAACAGAAAGTACTGCAA 59.689 43.478 0.00 0.00 41.06 4.08
2839 3024 5.971202 CGTGAAACAGAAAGTACTGCAAAAT 59.029 36.000 0.00 0.00 41.06 1.82
2845 3030 6.042143 ACAGAAAGTACTGCAAAATGGTTTG 58.958 36.000 0.00 0.00 45.88 2.93
2847 3032 3.385193 AGTACTGCAAAATGGTTTGGC 57.615 42.857 0.00 0.00 43.73 4.52
2848 3033 2.965147 AGTACTGCAAAATGGTTTGGCT 59.035 40.909 0.00 0.00 43.73 4.75
2850 3035 1.485895 ACTGCAAAATGGTTTGGCTGT 59.514 42.857 8.07 8.07 43.73 4.40
2851 3036 1.868498 CTGCAAAATGGTTTGGCTGTG 59.132 47.619 3.72 0.00 43.73 3.66
2852 3037 1.209019 TGCAAAATGGTTTGGCTGTGT 59.791 42.857 3.72 0.00 43.73 3.72
2853 3038 1.866601 GCAAAATGGTTTGGCTGTGTC 59.133 47.619 1.72 0.00 43.73 3.67
2854 3039 2.741228 GCAAAATGGTTTGGCTGTGTCA 60.741 45.455 1.72 0.00 43.73 3.58
2855 3040 3.529533 CAAAATGGTTTGGCTGTGTCAA 58.470 40.909 0.00 0.00 40.47 3.18
2856 3041 3.902881 AAATGGTTTGGCTGTGTCAAA 57.097 38.095 0.00 0.00 34.64 2.69
2857 3042 3.457610 AATGGTTTGGCTGTGTCAAAG 57.542 42.857 0.00 0.00 37.82 2.77
2858 3043 3.272766 GGTTTGGCTGTGTCAAAGC 57.727 52.632 6.44 6.44 45.58 3.51
2870 3055 0.668535 GTCAAAGCTCCCGCAGTTTT 59.331 50.000 0.00 0.00 36.02 2.43
2873 3058 2.292292 TCAAAGCTCCCGCAGTTTTTAC 59.708 45.455 0.00 0.00 33.49 2.01
2874 3059 0.872388 AAGCTCCCGCAGTTTTTACG 59.128 50.000 0.00 0.00 39.10 3.18
2877 3062 1.504359 CTCCCGCAGTTTTTACGTCA 58.496 50.000 0.00 0.00 0.00 4.35
2878 3063 1.459592 CTCCCGCAGTTTTTACGTCAG 59.540 52.381 0.00 0.00 0.00 3.51
2882 3067 2.132762 CGCAGTTTTTACGTCAGTCCT 58.867 47.619 0.00 0.00 0.00 3.85
2903 3088 4.348656 CTGAATGAGCGGATGATTTGTTG 58.651 43.478 0.00 0.00 0.00 3.33
2904 3089 2.857592 ATGAGCGGATGATTTGTTGC 57.142 45.000 0.00 0.00 0.00 4.17
2905 3090 1.825090 TGAGCGGATGATTTGTTGCT 58.175 45.000 0.00 0.00 34.96 3.91
2919 3104 4.433186 TTGTTGCTATCCCAAAATGTCG 57.567 40.909 0.00 0.00 0.00 4.35
2921 3106 3.438781 TGTTGCTATCCCAAAATGTCGAC 59.561 43.478 9.11 9.11 0.00 4.20
2962 3197 1.268743 GCAGAACTTTCACTGGCACAC 60.269 52.381 0.00 0.00 35.05 3.82
2981 3220 6.370442 GGCACACATGTATTTACTACTGACAA 59.630 38.462 0.00 0.00 0.00 3.18
2984 3223 6.310467 ACACATGTATTTACTACTGACAAGCG 59.690 38.462 0.00 0.00 0.00 4.68
3008 3251 1.078759 GAACATCGGTCGTCAGGCAG 61.079 60.000 0.00 0.00 0.00 4.85
3009 3252 2.202797 CATCGGTCGTCAGGCAGG 60.203 66.667 0.00 0.00 0.00 4.85
3010 3253 4.148825 ATCGGTCGTCAGGCAGGC 62.149 66.667 0.00 0.00 0.00 4.85
3012 3255 4.457496 CGGTCGTCAGGCAGGCAT 62.457 66.667 0.00 0.00 0.00 4.40
3013 3256 2.512515 GGTCGTCAGGCAGGCATC 60.513 66.667 0.00 0.00 0.00 3.91
3018 3279 1.447643 GTCAGGCAGGCATCGGTAT 59.552 57.895 0.00 0.00 0.00 2.73
3020 3281 0.179048 TCAGGCAGGCATCGGTATTG 60.179 55.000 0.00 0.00 0.00 1.90
3058 3320 6.408858 ACGAAGCATAAAGTGTGATTACTG 57.591 37.500 0.00 0.00 0.00 2.74
3059 3321 6.163476 ACGAAGCATAAAGTGTGATTACTGA 58.837 36.000 0.00 0.00 0.00 3.41
3061 3323 7.334421 ACGAAGCATAAAGTGTGATTACTGATT 59.666 33.333 0.00 0.00 0.00 2.57
3062 3324 8.177663 CGAAGCATAAAGTGTGATTACTGATTT 58.822 33.333 0.00 0.00 0.00 2.17
3065 3327 9.672673 AGCATAAAGTGTGATTACTGATTTACT 57.327 29.630 0.00 0.00 0.00 2.24
3066 3328 9.708222 GCATAAAGTGTGATTACTGATTTACTG 57.292 33.333 0.00 0.00 0.00 2.74
3072 3334 9.823647 AGTGTGATTACTGATTTACTGATTAGG 57.176 33.333 0.00 0.00 0.00 2.69
3073 3335 9.817809 GTGTGATTACTGATTTACTGATTAGGA 57.182 33.333 0.00 0.00 0.00 2.94
3098 3367 5.856126 ATTACAAGAAATTCGAGCGTTGA 57.144 34.783 0.00 0.00 0.00 3.18
3107 3376 1.135315 CGAGCGTTGATTGGCTTGG 59.865 57.895 0.00 0.00 40.16 3.61
3115 3384 2.284112 ATTGGCTTGGGTGGGCAG 60.284 61.111 0.00 0.00 40.22 4.85
3140 3410 6.080173 ACATGATCTGTTTGTCTCGGAAGAC 61.080 44.000 0.00 0.00 43.15 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.401766 CCACCACAAGCTCCATCGC 61.402 63.158 0.00 0.00 0.00 4.58
2 3 2.048603 GGCCACCACAAGCTCCATC 61.049 63.158 0.00 0.00 0.00 3.51
4 5 4.284550 GGGCCACCACAAGCTCCA 62.285 66.667 4.39 0.00 36.50 3.86
5 6 4.284550 TGGGCCACCACAAGCTCC 62.285 66.667 0.00 0.00 43.37 4.70
6 7 2.674380 CTGGGCCACCACAAGCTC 60.674 66.667 0.00 0.00 43.37 4.09
7 8 3.497884 GACTGGGCCACCACAAGCT 62.498 63.158 0.00 0.00 43.37 3.74
8 9 2.985847 GACTGGGCCACCACAAGC 60.986 66.667 0.00 0.00 43.37 4.01
9 10 2.669569 CGACTGGGCCACCACAAG 60.670 66.667 0.00 0.00 43.37 3.16
10 11 4.947147 GCGACTGGGCCACCACAA 62.947 66.667 0.00 0.00 43.37 3.33
30 31 4.548513 CCTCCTCCTCCTCCCGGG 62.549 77.778 16.85 16.85 0.00 5.73
31 32 4.548513 CCCTCCTCCTCCTCCCGG 62.549 77.778 0.00 0.00 0.00 5.73
32 33 4.548513 CCCCTCCTCCTCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
33 34 3.036959 TCCCCTCCTCCTCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
34 35 2.612251 CTCCCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
35 36 2.612251 CCTCCCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
36 37 3.039526 CCCTCCCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
37 38 4.179599 CCCCTCCCCTCCTCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
38 39 2.416923 ATCCCCTCCCCTCCTCCTC 61.417 68.421 0.00 0.00 0.00 3.71
39 40 2.289979 ATCCCCTCCCCTCCTCCT 60.290 66.667 0.00 0.00 0.00 3.69
40 41 2.122189 CATCCCCTCCCCTCCTCC 60.122 72.222 0.00 0.00 0.00 4.30
41 42 2.851588 GCATCCCCTCCCCTCCTC 60.852 72.222 0.00 0.00 0.00 3.71
42 43 4.888325 CGCATCCCCTCCCCTCCT 62.888 72.222 0.00 0.00 0.00 3.69
53 54 3.880846 CTTCAAGGGCGCGCATCC 61.881 66.667 34.42 25.47 0.00 3.51
54 55 3.880846 CCTTCAAGGGCGCGCATC 61.881 66.667 34.42 23.66 0.00 3.91
62 63 2.092914 CCTAACCTACAGCCTTCAAGGG 60.093 54.545 5.33 0.00 35.37 3.95
63 64 2.092914 CCCTAACCTACAGCCTTCAAGG 60.093 54.545 0.00 0.00 38.80 3.61
64 65 2.838202 TCCCTAACCTACAGCCTTCAAG 59.162 50.000 0.00 0.00 0.00 3.02
65 66 2.910544 TCCCTAACCTACAGCCTTCAA 58.089 47.619 0.00 0.00 0.00 2.69
66 67 2.634639 TCCCTAACCTACAGCCTTCA 57.365 50.000 0.00 0.00 0.00 3.02
67 68 2.104963 CCATCCCTAACCTACAGCCTTC 59.895 54.545 0.00 0.00 0.00 3.46
68 69 2.127708 CCATCCCTAACCTACAGCCTT 58.872 52.381 0.00 0.00 0.00 4.35
69 70 1.294068 TCCATCCCTAACCTACAGCCT 59.706 52.381 0.00 0.00 0.00 4.58
70 71 1.802553 TCCATCCCTAACCTACAGCC 58.197 55.000 0.00 0.00 0.00 4.85
71 72 3.007398 CAGATCCATCCCTAACCTACAGC 59.993 52.174 0.00 0.00 0.00 4.40
72 73 3.580458 CCAGATCCATCCCTAACCTACAG 59.420 52.174 0.00 0.00 0.00 2.74
73 74 3.587498 CCAGATCCATCCCTAACCTACA 58.413 50.000 0.00 0.00 0.00 2.74
74 75 2.303311 GCCAGATCCATCCCTAACCTAC 59.697 54.545 0.00 0.00 0.00 3.18
75 76 2.621070 GCCAGATCCATCCCTAACCTA 58.379 52.381 0.00 0.00 0.00 3.08
76 77 1.439543 GCCAGATCCATCCCTAACCT 58.560 55.000 0.00 0.00 0.00 3.50
77 78 0.402121 GGCCAGATCCATCCCTAACC 59.598 60.000 0.00 0.00 0.00 2.85
78 79 1.140312 TGGCCAGATCCATCCCTAAC 58.860 55.000 0.00 0.00 0.00 2.34
79 80 1.706866 CATGGCCAGATCCATCCCTAA 59.293 52.381 13.05 0.00 44.63 2.69
80 81 1.132430 TCATGGCCAGATCCATCCCTA 60.132 52.381 13.05 0.00 44.63 3.53
81 82 0.402419 TCATGGCCAGATCCATCCCT 60.402 55.000 13.05 0.00 44.63 4.20
82 83 0.251077 GTCATGGCCAGATCCATCCC 60.251 60.000 13.05 0.00 44.63 3.85
83 84 0.475475 TGTCATGGCCAGATCCATCC 59.525 55.000 13.05 0.00 44.63 3.51
84 85 1.893544 CTGTCATGGCCAGATCCATC 58.106 55.000 13.05 0.00 44.63 3.51
86 87 1.225426 GCTGTCATGGCCAGATCCA 59.775 57.895 13.05 4.22 40.97 3.41
87 88 0.818445 CTGCTGTCATGGCCAGATCC 60.818 60.000 13.05 0.00 31.38 3.36
88 89 0.818445 CCTGCTGTCATGGCCAGATC 60.818 60.000 13.05 4.11 31.38 2.75
89 90 1.226542 CCTGCTGTCATGGCCAGAT 59.773 57.895 13.05 0.00 31.38 2.90
90 91 2.672908 CCTGCTGTCATGGCCAGA 59.327 61.111 13.05 6.16 31.38 3.86
91 92 3.138798 GCCTGCTGTCATGGCCAG 61.139 66.667 13.05 3.43 40.71 4.85
92 93 3.931190 CTGCCTGCTGTCATGGCCA 62.931 63.158 8.56 8.56 45.56 5.36
93 94 3.138798 CTGCCTGCTGTCATGGCC 61.139 66.667 0.00 0.00 45.56 5.36
94 95 3.823330 GCTGCCTGCTGTCATGGC 61.823 66.667 0.00 0.00 46.26 4.40
95 96 3.138798 GGCTGCCTGCTGTCATGG 61.139 66.667 12.43 0.00 42.39 3.66
96 97 1.753078 ATGGCTGCCTGCTGTCATG 60.753 57.895 21.03 0.00 38.46 3.07
97 98 1.753078 CATGGCTGCCTGCTGTCAT 60.753 57.895 21.03 9.89 40.05 3.06
98 99 2.360726 CATGGCTGCCTGCTGTCA 60.361 61.111 21.03 5.78 42.39 3.58
99 100 3.138798 CCATGGCTGCCTGCTGTC 61.139 66.667 21.03 0.00 42.39 3.51
161 162 4.452733 GAACTCCCTCACCGGCGG 62.453 72.222 27.06 27.06 0.00 6.13
162 163 4.796231 CGAACTCCCTCACCGGCG 62.796 72.222 0.00 0.00 0.00 6.46
163 164 3.692406 ACGAACTCCCTCACCGGC 61.692 66.667 0.00 0.00 0.00 6.13
164 165 2.261671 CACGAACTCCCTCACCGG 59.738 66.667 0.00 0.00 0.00 5.28
165 166 2.214181 CTCCACGAACTCCCTCACCG 62.214 65.000 0.00 0.00 0.00 4.94
166 167 1.592223 CTCCACGAACTCCCTCACC 59.408 63.158 0.00 0.00 0.00 4.02
167 168 1.592223 CCTCCACGAACTCCCTCAC 59.408 63.158 0.00 0.00 0.00 3.51
168 169 2.283529 GCCTCCACGAACTCCCTCA 61.284 63.158 0.00 0.00 0.00 3.86
169 170 2.579738 GCCTCCACGAACTCCCTC 59.420 66.667 0.00 0.00 0.00 4.30
170 171 3.003763 GGCCTCCACGAACTCCCT 61.004 66.667 0.00 0.00 0.00 4.20
171 172 4.097361 GGGCCTCCACGAACTCCC 62.097 72.222 0.84 0.00 0.00 4.30
172 173 3.316573 CTGGGCCTCCACGAACTCC 62.317 68.421 4.53 0.00 38.32 3.85
173 174 2.266055 CTGGGCCTCCACGAACTC 59.734 66.667 4.53 0.00 38.32 3.01
174 175 2.526873 ACTGGGCCTCCACGAACT 60.527 61.111 4.53 0.00 38.32 3.01
175 176 2.047179 GACTGGGCCTCCACGAAC 60.047 66.667 4.53 0.00 38.32 3.95
176 177 3.691342 CGACTGGGCCTCCACGAA 61.691 66.667 4.53 0.00 38.32 3.85
179 180 4.767255 CTGCGACTGGGCCTCCAC 62.767 72.222 4.53 0.00 38.32 4.02
182 183 4.828925 GAGCTGCGACTGGGCCTC 62.829 72.222 4.53 0.00 0.00 4.70
215 216 3.545481 CTTCAGCCTACGTGCGCG 61.545 66.667 19.78 19.78 44.93 6.86
216 217 2.552585 TACCTTCAGCCTACGTGCGC 62.553 60.000 0.00 0.00 36.02 6.09
217 218 0.525668 CTACCTTCAGCCTACGTGCG 60.526 60.000 0.00 0.00 36.02 5.34
218 219 0.179108 CCTACCTTCAGCCTACGTGC 60.179 60.000 0.00 0.00 0.00 5.34
219 220 0.460311 CCCTACCTTCAGCCTACGTG 59.540 60.000 0.00 0.00 0.00 4.49
220 221 0.686769 CCCCTACCTTCAGCCTACGT 60.687 60.000 0.00 0.00 0.00 3.57
221 222 0.396695 TCCCCTACCTTCAGCCTACG 60.397 60.000 0.00 0.00 0.00 3.51
222 223 1.694696 CATCCCCTACCTTCAGCCTAC 59.305 57.143 0.00 0.00 0.00 3.18
223 224 1.414538 CCATCCCCTACCTTCAGCCTA 60.415 57.143 0.00 0.00 0.00 3.93
224 225 0.695803 CCATCCCCTACCTTCAGCCT 60.696 60.000 0.00 0.00 0.00 4.58
225 226 0.694444 TCCATCCCCTACCTTCAGCC 60.694 60.000 0.00 0.00 0.00 4.85
226 227 0.761802 CTCCATCCCCTACCTTCAGC 59.238 60.000 0.00 0.00 0.00 4.26
227 228 1.428869 CCTCCATCCCCTACCTTCAG 58.571 60.000 0.00 0.00 0.00 3.02
228 229 0.694444 GCCTCCATCCCCTACCTTCA 60.694 60.000 0.00 0.00 0.00 3.02
229 230 0.694444 TGCCTCCATCCCCTACCTTC 60.694 60.000 0.00 0.00 0.00 3.46
230 231 0.028642 ATGCCTCCATCCCCTACCTT 60.029 55.000 0.00 0.00 0.00 3.50
231 232 0.769776 CATGCCTCCATCCCCTACCT 60.770 60.000 0.00 0.00 0.00 3.08
232 233 1.062488 ACATGCCTCCATCCCCTACC 61.062 60.000 0.00 0.00 0.00 3.18
233 234 1.729586 TACATGCCTCCATCCCCTAC 58.270 55.000 0.00 0.00 0.00 3.18
234 235 2.090210 TCTTACATGCCTCCATCCCCTA 60.090 50.000 0.00 0.00 0.00 3.53
235 236 1.143813 CTTACATGCCTCCATCCCCT 58.856 55.000 0.00 0.00 0.00 4.79
236 237 1.140312 TCTTACATGCCTCCATCCCC 58.860 55.000 0.00 0.00 0.00 4.81
237 238 3.217626 CTTTCTTACATGCCTCCATCCC 58.782 50.000 0.00 0.00 0.00 3.85
238 239 3.117888 TCCTTTCTTACATGCCTCCATCC 60.118 47.826 0.00 0.00 0.00 3.51
239 240 4.133078 CTCCTTTCTTACATGCCTCCATC 58.867 47.826 0.00 0.00 0.00 3.51
240 241 3.117738 CCTCCTTTCTTACATGCCTCCAT 60.118 47.826 0.00 0.00 0.00 3.41
241 242 2.239654 CCTCCTTTCTTACATGCCTCCA 59.760 50.000 0.00 0.00 0.00 3.86
242 243 2.924421 CCTCCTTTCTTACATGCCTCC 58.076 52.381 0.00 0.00 0.00 4.30
243 244 2.293170 GCCTCCTTTCTTACATGCCTC 58.707 52.381 0.00 0.00 0.00 4.70
244 245 1.407437 CGCCTCCTTTCTTACATGCCT 60.407 52.381 0.00 0.00 0.00 4.75
245 246 1.017387 CGCCTCCTTTCTTACATGCC 58.983 55.000 0.00 0.00 0.00 4.40
246 247 1.017387 CCGCCTCCTTTCTTACATGC 58.983 55.000 0.00 0.00 0.00 4.06
247 248 1.668419 CCCGCCTCCTTTCTTACATG 58.332 55.000 0.00 0.00 0.00 3.21
248 249 0.546598 CCCCGCCTCCTTTCTTACAT 59.453 55.000 0.00 0.00 0.00 2.29
249 250 0.545787 TCCCCGCCTCCTTTCTTACA 60.546 55.000 0.00 0.00 0.00 2.41
250 251 0.837940 ATCCCCGCCTCCTTTCTTAC 59.162 55.000 0.00 0.00 0.00 2.34
251 252 1.129058 GATCCCCGCCTCCTTTCTTA 58.871 55.000 0.00 0.00 0.00 2.10
252 253 0.914417 TGATCCCCGCCTCCTTTCTT 60.914 55.000 0.00 0.00 0.00 2.52
253 254 1.306997 TGATCCCCGCCTCCTTTCT 60.307 57.895 0.00 0.00 0.00 2.52
254 255 1.153147 GTGATCCCCGCCTCCTTTC 60.153 63.158 0.00 0.00 0.00 2.62
255 256 2.998949 GTGATCCCCGCCTCCTTT 59.001 61.111 0.00 0.00 0.00 3.11
256 257 3.470888 CGTGATCCCCGCCTCCTT 61.471 66.667 0.00 0.00 0.00 3.36
321 322 2.635338 GTTTTCCGTCGGCACACC 59.365 61.111 6.34 0.00 0.00 4.16
322 323 2.247267 CGTTTTCCGTCGGCACAC 59.753 61.111 6.34 0.00 0.00 3.82
331 332 6.673154 ATAGATAAAGGGAAACGTTTTCCG 57.327 37.500 28.58 0.00 45.48 4.30
332 333 8.618677 CCTAATAGATAAAGGGAAACGTTTTCC 58.381 37.037 28.10 28.10 45.48 3.13
333 334 9.170734 ACCTAATAGATAAAGGGAAACGTTTTC 57.829 33.333 15.89 13.44 45.48 2.29
334 335 9.524496 AACCTAATAGATAAAGGGAAACGTTTT 57.476 29.630 15.89 0.82 45.48 2.43
336 337 7.066645 GCAACCTAATAGATAAAGGGAAACGTT 59.933 37.037 0.00 0.00 40.85 3.99
337 338 6.541278 GCAACCTAATAGATAAAGGGAAACGT 59.459 38.462 0.00 0.00 34.52 3.99
338 339 6.540914 TGCAACCTAATAGATAAAGGGAAACG 59.459 38.462 0.00 0.00 34.52 3.60
339 340 7.875327 TGCAACCTAATAGATAAAGGGAAAC 57.125 36.000 0.00 0.00 34.52 2.78
340 341 8.058847 ACATGCAACCTAATAGATAAAGGGAAA 58.941 33.333 0.00 0.00 34.52 3.13
341 342 7.582719 ACATGCAACCTAATAGATAAAGGGAA 58.417 34.615 0.00 0.00 34.52 3.97
342 343 7.149202 ACATGCAACCTAATAGATAAAGGGA 57.851 36.000 0.00 0.00 34.52 4.20
343 344 7.823745 AACATGCAACCTAATAGATAAAGGG 57.176 36.000 0.00 0.00 34.52 3.95
344 345 8.902806 TCAAACATGCAACCTAATAGATAAAGG 58.097 33.333 0.00 0.00 36.42 3.11
345 346 9.941664 CTCAAACATGCAACCTAATAGATAAAG 57.058 33.333 0.00 0.00 0.00 1.85
346 347 9.461312 ACTCAAACATGCAACCTAATAGATAAA 57.539 29.630 0.00 0.00 0.00 1.40
352 353 9.899661 ACTTATACTCAAACATGCAACCTAATA 57.100 29.630 0.00 0.00 0.00 0.98
353 354 8.807948 ACTTATACTCAAACATGCAACCTAAT 57.192 30.769 0.00 0.00 0.00 1.73
354 355 8.630054 AACTTATACTCAAACATGCAACCTAA 57.370 30.769 0.00 0.00 0.00 2.69
355 356 8.511321 CAAACTTATACTCAAACATGCAACCTA 58.489 33.333 0.00 0.00 0.00 3.08
356 357 7.230510 TCAAACTTATACTCAAACATGCAACCT 59.769 33.333 0.00 0.00 0.00 3.50
357 358 7.367285 TCAAACTTATACTCAAACATGCAACC 58.633 34.615 0.00 0.00 0.00 3.77
358 359 7.538678 CCTCAAACTTATACTCAAACATGCAAC 59.461 37.037 0.00 0.00 0.00 4.17
359 360 7.230510 ACCTCAAACTTATACTCAAACATGCAA 59.769 33.333 0.00 0.00 0.00 4.08
360 361 6.714810 ACCTCAAACTTATACTCAAACATGCA 59.285 34.615 0.00 0.00 0.00 3.96
361 362 7.145932 ACCTCAAACTTATACTCAAACATGC 57.854 36.000 0.00 0.00 0.00 4.06
362 363 7.538678 GCAACCTCAAACTTATACTCAAACATG 59.461 37.037 0.00 0.00 0.00 3.21
363 364 7.230510 TGCAACCTCAAACTTATACTCAAACAT 59.769 33.333 0.00 0.00 0.00 2.71
364 365 6.544197 TGCAACCTCAAACTTATACTCAAACA 59.456 34.615 0.00 0.00 0.00 2.83
365 366 6.966021 TGCAACCTCAAACTTATACTCAAAC 58.034 36.000 0.00 0.00 0.00 2.93
366 367 7.094377 GGATGCAACCTCAAACTTATACTCAAA 60.094 37.037 5.61 0.00 0.00 2.69
367 368 6.374333 GGATGCAACCTCAAACTTATACTCAA 59.626 38.462 5.61 0.00 0.00 3.02
368 369 5.880332 GGATGCAACCTCAAACTTATACTCA 59.120 40.000 5.61 0.00 0.00 3.41
369 370 5.297029 GGGATGCAACCTCAAACTTATACTC 59.703 44.000 13.30 0.00 0.00 2.59
370 371 5.193679 GGGATGCAACCTCAAACTTATACT 58.806 41.667 13.30 0.00 0.00 2.12
371 372 4.035208 CGGGATGCAACCTCAAACTTATAC 59.965 45.833 13.30 0.00 0.00 1.47
372 373 4.196193 CGGGATGCAACCTCAAACTTATA 58.804 43.478 13.30 0.00 0.00 0.98
373 374 3.016736 CGGGATGCAACCTCAAACTTAT 58.983 45.455 13.30 0.00 0.00 1.73
374 375 2.432444 CGGGATGCAACCTCAAACTTA 58.568 47.619 13.30 0.00 0.00 2.24
375 376 1.247567 CGGGATGCAACCTCAAACTT 58.752 50.000 13.30 0.00 0.00 2.66
376 377 0.609131 CCGGGATGCAACCTCAAACT 60.609 55.000 13.30 0.00 0.00 2.66
377 378 0.608035 TCCGGGATGCAACCTCAAAC 60.608 55.000 13.30 0.00 0.00 2.93
378 379 0.608035 GTCCGGGATGCAACCTCAAA 60.608 55.000 13.30 0.00 0.00 2.69
379 380 1.002624 GTCCGGGATGCAACCTCAA 60.003 57.895 13.30 0.00 0.00 3.02
380 381 1.899437 GAGTCCGGGATGCAACCTCA 61.899 60.000 13.30 0.00 0.00 3.86
381 382 1.153349 GAGTCCGGGATGCAACCTC 60.153 63.158 13.30 2.33 0.00 3.85
382 383 2.990479 GAGTCCGGGATGCAACCT 59.010 61.111 13.30 0.00 0.00 3.50
383 384 2.511600 CGAGTCCGGGATGCAACC 60.512 66.667 4.00 4.00 0.00 3.77
384 385 1.359459 GAACGAGTCCGGGATGCAAC 61.359 60.000 0.00 0.00 40.78 4.17
402 403 1.529865 CGTCCATCTATACGTCTGCGA 59.470 52.381 0.00 0.00 42.00 5.10
417 418 3.028850 CAGACCTAAGGTAATCCGTCCA 58.971 50.000 0.00 0.00 35.25 4.02
419 420 2.223994 GCCAGACCTAAGGTAATCCGTC 60.224 54.545 0.00 0.00 35.25 4.79
423 424 6.673839 ATTAGAGCCAGACCTAAGGTAATC 57.326 41.667 0.00 0.00 35.25 1.75
428 429 4.262678 GCCTAATTAGAGCCAGACCTAAGG 60.263 50.000 14.28 0.00 0.00 2.69
457 458 5.396654 GTCTTTGCTTCGACACTGAAATTTC 59.603 40.000 11.41 11.41 0.00 2.17
771 788 1.071542 TGATTGGCTGGTTGACGAGAA 59.928 47.619 0.00 0.00 0.00 2.87
807 835 3.724751 GCTAGTAATCTGAACGCACGTAG 59.275 47.826 0.00 0.00 0.00 3.51
825 853 3.623510 TGATCGTCTCAGTACTGTGCTAG 59.376 47.826 21.99 12.28 0.00 3.42
838 868 0.179161 CTGGTCGTGGTGATCGTCTC 60.179 60.000 0.00 0.00 0.00 3.36
859 896 1.269413 TGTACTTTATAGCGCTCGGCC 60.269 52.381 16.34 0.00 45.17 6.13
872 909 4.519730 AGACGCTAGAGAACAGTGTACTTT 59.480 41.667 0.00 0.00 36.89 2.66
992 1029 3.638592 AAGAAACCCATCCCGGCCG 62.639 63.158 21.04 21.04 0.00 6.13
1053 1090 2.286872 CATGGAAGGATCACACAGAGC 58.713 52.381 0.00 0.00 0.00 4.09
1227 1264 1.207089 AGAATGGAGAAATGCGACCGA 59.793 47.619 0.00 0.00 0.00 4.69
1229 1266 1.943340 GGAGAATGGAGAAATGCGACC 59.057 52.381 0.00 0.00 0.00 4.79
1265 1308 1.062581 TCAATCTCAGGGAGCTAGCCT 60.063 52.381 12.13 0.00 0.00 4.58
1266 1309 1.418334 TCAATCTCAGGGAGCTAGCC 58.582 55.000 12.13 2.59 0.00 3.93
1317 1360 2.668632 GTCACATCCCTGGGCGAA 59.331 61.111 8.22 0.00 0.00 4.70
1318 1361 3.770040 CGTCACATCCCTGGGCGA 61.770 66.667 8.22 0.00 30.20 5.54
1321 1364 4.082523 ACGCGTCACATCCCTGGG 62.083 66.667 5.58 6.33 0.00 4.45
1322 1365 2.509336 GACGCGTCACATCCCTGG 60.509 66.667 33.09 0.00 0.00 4.45
1394 1437 2.661537 CCGCGCACAGAGTTGACA 60.662 61.111 8.75 0.00 0.00 3.58
1549 1596 3.021695 ACACTGCGAGCTGTATAAGGTA 58.978 45.455 7.27 0.00 36.52 3.08
1575 1627 1.009389 ACTTCGCGTCAGCACTTAGC 61.009 55.000 5.77 0.00 45.49 3.09
1576 1628 2.257974 TACTTCGCGTCAGCACTTAG 57.742 50.000 5.77 0.00 45.49 2.18
1577 1629 2.710220 TTACTTCGCGTCAGCACTTA 57.290 45.000 5.77 0.00 45.49 2.24
1578 1630 1.993370 GATTACTTCGCGTCAGCACTT 59.007 47.619 5.77 0.00 45.49 3.16
1579 1631 1.202582 AGATTACTTCGCGTCAGCACT 59.797 47.619 5.77 0.00 45.49 4.40
1580 1632 1.321743 CAGATTACTTCGCGTCAGCAC 59.678 52.381 5.77 0.00 45.49 4.40
1581 1633 1.629013 CAGATTACTTCGCGTCAGCA 58.371 50.000 5.77 0.00 45.49 4.41
1818 1929 2.027751 GTCTCCCCGTAGATGCGC 59.972 66.667 0.00 0.00 0.00 6.09
2137 2248 3.744660 AGTTAACCTTCCTGCAGTTCAG 58.255 45.455 13.81 5.04 42.49 3.02
2163 2274 1.737793 CGTGAGGCAATCCTTAACCAC 59.262 52.381 0.00 0.00 44.46 4.16
2171 2282 3.071479 TGTTAAGTTCGTGAGGCAATCC 58.929 45.455 0.00 0.00 0.00 3.01
2180 2291 5.756950 ATACGTGTGATGTTAAGTTCGTG 57.243 39.130 0.00 0.00 0.00 4.35
2181 2292 6.774354 AAATACGTGTGATGTTAAGTTCGT 57.226 33.333 0.00 0.00 0.00 3.85
2182 2293 7.844169 CCATAAATACGTGTGATGTTAAGTTCG 59.156 37.037 0.00 0.00 0.00 3.95
2183 2294 8.120465 CCCATAAATACGTGTGATGTTAAGTTC 58.880 37.037 0.00 0.00 0.00 3.01
2184 2295 7.825270 TCCCATAAATACGTGTGATGTTAAGTT 59.175 33.333 0.00 0.00 0.00 2.66
2185 2296 7.332557 TCCCATAAATACGTGTGATGTTAAGT 58.667 34.615 0.00 0.00 0.00 2.24
2186 2297 7.780008 TCCCATAAATACGTGTGATGTTAAG 57.220 36.000 0.00 0.00 0.00 1.85
2199 2330 3.252458 GCCGGTCACAATCCCATAAATAC 59.748 47.826 1.90 0.00 0.00 1.89
2200 2331 3.137544 AGCCGGTCACAATCCCATAAATA 59.862 43.478 1.90 0.00 0.00 1.40
2202 2333 1.283613 AGCCGGTCACAATCCCATAAA 59.716 47.619 1.90 0.00 0.00 1.40
2208 2343 2.100631 CGTCAGCCGGTCACAATCC 61.101 63.158 1.90 0.00 0.00 3.01
2220 2355 0.737715 ATTCTCCTGTTCGCGTCAGC 60.738 55.000 21.54 2.15 40.74 4.26
2230 2365 2.158755 CCGCCAAGGATAATTCTCCTGT 60.159 50.000 12.81 1.82 45.15 4.00
2237 2372 0.550914 TCAGGCCGCCAAGGATAATT 59.449 50.000 13.15 0.00 45.00 1.40
2243 2378 1.971505 TATCAGTCAGGCCGCCAAGG 61.972 60.000 13.15 0.37 44.97 3.61
2244 2379 0.107703 TTATCAGTCAGGCCGCCAAG 60.108 55.000 13.15 3.65 0.00 3.61
2245 2380 0.546122 ATTATCAGTCAGGCCGCCAA 59.454 50.000 13.15 0.00 0.00 4.52
2247 2382 0.106708 TGATTATCAGTCAGGCCGCC 59.893 55.000 0.00 0.00 0.00 6.13
2248 2383 1.506493 CTGATTATCAGTCAGGCCGC 58.494 55.000 13.65 0.00 39.58 6.53
2253 2388 6.634805 ACTACACAACCTGATTATCAGTCAG 58.365 40.000 19.37 11.23 42.80 3.51
2254 2389 6.605471 ACTACACAACCTGATTATCAGTCA 57.395 37.500 19.37 0.00 42.80 3.41
2255 2390 8.251721 ACTAACTACACAACCTGATTATCAGTC 58.748 37.037 19.37 0.00 42.80 3.51
2256 2391 8.135382 ACTAACTACACAACCTGATTATCAGT 57.865 34.615 19.37 6.50 42.80 3.41
2257 2392 9.088512 GAACTAACTACACAACCTGATTATCAG 57.911 37.037 14.80 14.80 43.91 2.90
2258 2393 8.812972 AGAACTAACTACACAACCTGATTATCA 58.187 33.333 0.00 0.00 0.00 2.15
2259 2394 9.303537 GAGAACTAACTACACAACCTGATTATC 57.696 37.037 0.00 0.00 0.00 1.75
2260 2395 8.812972 TGAGAACTAACTACACAACCTGATTAT 58.187 33.333 0.00 0.00 0.00 1.28
2266 2401 4.344102 TGCTGAGAACTAACTACACAACCT 59.656 41.667 0.00 0.00 0.00 3.50
2283 2418 1.533338 GCGCAATTCAATCCTGCTGAG 60.533 52.381 0.30 0.00 33.82 3.35
2285 2420 0.171679 TGCGCAATTCAATCCTGCTG 59.828 50.000 8.16 0.00 33.82 4.41
2286 2421 0.454600 CTGCGCAATTCAATCCTGCT 59.545 50.000 13.05 0.00 33.82 4.24
2289 2424 1.430632 CGCTGCGCAATTCAATCCT 59.569 52.632 13.05 0.00 0.00 3.24
2290 2425 3.987187 CGCTGCGCAATTCAATCC 58.013 55.556 13.05 0.00 0.00 3.01
2367 2535 9.507329 ACTATGACTGTGTCAATAAAATGTCTT 57.493 29.630 4.46 0.00 45.96 3.01
2368 2536 8.939929 CACTATGACTGTGTCAATAAAATGTCT 58.060 33.333 4.46 0.00 45.96 3.41
2369 2537 8.721478 ACACTATGACTGTGTCAATAAAATGTC 58.279 33.333 4.46 0.00 45.96 3.06
2370 2538 8.621532 ACACTATGACTGTGTCAATAAAATGT 57.378 30.769 4.46 2.24 45.96 2.71
2398 2566 9.838339 CCTCTGTATCATATGTAAGACCTTTTT 57.162 33.333 1.90 0.00 0.00 1.94
2399 2567 8.993424 ACCTCTGTATCATATGTAAGACCTTTT 58.007 33.333 1.90 0.00 0.00 2.27
2400 2568 8.554490 ACCTCTGTATCATATGTAAGACCTTT 57.446 34.615 1.90 0.00 0.00 3.11
2401 2569 9.303116 CTACCTCTGTATCATATGTAAGACCTT 57.697 37.037 1.90 0.00 0.00 3.50
2402 2570 8.449625 ACTACCTCTGTATCATATGTAAGACCT 58.550 37.037 1.90 0.00 0.00 3.85
2403 2571 8.638629 ACTACCTCTGTATCATATGTAAGACC 57.361 38.462 1.90 0.00 0.00 3.85
2409 2577 9.509956 GTCTTCTACTACCTCTGTATCATATGT 57.490 37.037 1.90 0.00 0.00 2.29
2410 2578 9.508642 TGTCTTCTACTACCTCTGTATCATATG 57.491 37.037 0.00 0.00 0.00 1.78
2411 2579 9.733556 CTGTCTTCTACTACCTCTGTATCATAT 57.266 37.037 0.00 0.00 0.00 1.78
2412 2580 8.715842 ACTGTCTTCTACTACCTCTGTATCATA 58.284 37.037 0.00 0.00 0.00 2.15
2413 2581 7.579105 ACTGTCTTCTACTACCTCTGTATCAT 58.421 38.462 0.00 0.00 0.00 2.45
2414 2582 6.959904 ACTGTCTTCTACTACCTCTGTATCA 58.040 40.000 0.00 0.00 0.00 2.15
2415 2583 8.206189 AGTACTGTCTTCTACTACCTCTGTATC 58.794 40.741 0.00 0.00 0.00 2.24
2416 2584 8.093118 AGTACTGTCTTCTACTACCTCTGTAT 57.907 38.462 0.00 0.00 0.00 2.29
2417 2585 7.493499 AGTACTGTCTTCTACTACCTCTGTA 57.507 40.000 0.00 0.00 0.00 2.74
2418 2586 6.377245 AGTACTGTCTTCTACTACCTCTGT 57.623 41.667 0.00 0.00 0.00 3.41
2419 2587 7.775397 GTAGTACTGTCTTCTACTACCTCTG 57.225 44.000 5.39 0.00 39.24 3.35
2424 2592 7.602517 TTTCGGTAGTACTGTCTTCTACTAC 57.397 40.000 5.39 8.60 42.28 2.73
2425 2593 8.798859 ATTTTCGGTAGTACTGTCTTCTACTA 57.201 34.615 5.39 1.97 35.69 1.82
2426 2594 7.392673 TGATTTTCGGTAGTACTGTCTTCTACT 59.607 37.037 5.39 2.75 35.69 2.57
2427 2595 7.533426 TGATTTTCGGTAGTACTGTCTTCTAC 58.467 38.462 5.39 0.00 34.93 2.59
2428 2596 7.692460 TGATTTTCGGTAGTACTGTCTTCTA 57.308 36.000 5.39 0.00 0.00 2.10
2429 2597 6.585695 TGATTTTCGGTAGTACTGTCTTCT 57.414 37.500 5.39 0.00 0.00 2.85
2430 2598 6.812160 ACATGATTTTCGGTAGTACTGTCTTC 59.188 38.462 5.39 3.81 0.00 2.87
2431 2599 6.590292 CACATGATTTTCGGTAGTACTGTCTT 59.410 38.462 5.39 0.00 0.00 3.01
2437 2605 7.970384 TCATTTCACATGATTTTCGGTAGTAC 58.030 34.615 0.00 0.00 0.00 2.73
2443 2611 9.229784 CTTTCTATCATTTCACATGATTTTCGG 57.770 33.333 0.00 0.00 39.30 4.30
2444 2612 9.778993 ACTTTCTATCATTTCACATGATTTTCG 57.221 29.630 0.00 0.00 39.30 3.46
2450 2618 8.514594 GGTTTCACTTTCTATCATTTCACATGA 58.485 33.333 0.00 0.00 0.00 3.07
2456 2624 5.022021 CGCGGTTTCACTTTCTATCATTTC 58.978 41.667 0.00 0.00 0.00 2.17
2457 2625 4.454504 ACGCGGTTTCACTTTCTATCATTT 59.545 37.500 12.47 0.00 0.00 2.32
2460 2628 3.034721 ACGCGGTTTCACTTTCTATCA 57.965 42.857 12.47 0.00 0.00 2.15
2465 2633 1.505425 AGGTACGCGGTTTCACTTTC 58.495 50.000 12.47 0.00 0.00 2.62
2485 2661 8.592155 GCTGAAAAACGTTTATTTTTGTCTTCT 58.408 29.630 15.03 0.00 40.89 2.85
2503 2679 6.252441 CGTGTGATGTAAGTTTTGCTGAAAAA 59.748 34.615 0.00 0.00 35.35 1.94
2505 2681 5.065346 TCGTGTGATGTAAGTTTTGCTGAAA 59.935 36.000 0.00 0.00 0.00 2.69
2506 2682 4.572795 TCGTGTGATGTAAGTTTTGCTGAA 59.427 37.500 0.00 0.00 0.00 3.02
2507 2683 4.123506 TCGTGTGATGTAAGTTTTGCTGA 58.876 39.130 0.00 0.00 0.00 4.26
2508 2684 4.024893 ACTCGTGTGATGTAAGTTTTGCTG 60.025 41.667 0.00 0.00 0.00 4.41
2509 2685 4.127171 ACTCGTGTGATGTAAGTTTTGCT 58.873 39.130 0.00 0.00 0.00 3.91
2510 2686 4.468095 ACTCGTGTGATGTAAGTTTTGC 57.532 40.909 0.00 0.00 0.00 3.68
2511 2687 6.519353 TGTACTCGTGTGATGTAAGTTTTG 57.481 37.500 0.00 0.00 0.00 2.44
2512 2688 7.152645 AGATGTACTCGTGTGATGTAAGTTTT 58.847 34.615 0.00 0.00 0.00 2.43
2513 2689 6.688578 AGATGTACTCGTGTGATGTAAGTTT 58.311 36.000 0.00 0.00 0.00 2.66
2514 2690 6.268825 AGATGTACTCGTGTGATGTAAGTT 57.731 37.500 0.00 0.00 0.00 2.66
2515 2691 5.163642 GGAGATGTACTCGTGTGATGTAAGT 60.164 44.000 0.00 0.00 45.76 2.24
2516 2692 5.066634 AGGAGATGTACTCGTGTGATGTAAG 59.933 44.000 0.00 0.00 45.76 2.34
2517 2693 4.948004 AGGAGATGTACTCGTGTGATGTAA 59.052 41.667 0.00 0.00 45.76 2.41
2543 2719 3.622060 ATTGTTCGAGCACCCGGGG 62.622 63.158 27.92 12.73 0.00 5.73
2544 2720 1.241315 AAATTGTTCGAGCACCCGGG 61.241 55.000 22.25 22.25 0.00 5.73
2545 2721 0.109781 CAAATTGTTCGAGCACCCGG 60.110 55.000 0.00 0.00 0.00 5.73
2546 2722 0.729140 GCAAATTGTTCGAGCACCCG 60.729 55.000 0.00 0.00 0.00 5.28
2547 2723 0.729140 CGCAAATTGTTCGAGCACCC 60.729 55.000 0.00 0.00 0.00 4.61
2548 2724 0.040425 ACGCAAATTGTTCGAGCACC 60.040 50.000 0.00 0.00 0.00 5.01
2583 2759 2.792890 CGAGCTCACCGACAAGTGATAG 60.793 54.545 15.40 0.00 45.39 2.08
2624 2801 0.167470 CACTCTTCGCAGGCAATGTG 59.833 55.000 0.00 0.00 41.00 3.21
2625 2802 0.957395 CCACTCTTCGCAGGCAATGT 60.957 55.000 0.00 0.00 0.00 2.71
2633 2810 0.179059 TGAAAGCACCACTCTTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
2634 2811 1.129437 GATGAAAGCACCACTCTTCGC 59.871 52.381 0.00 0.00 0.00 4.70
2635 2812 1.391485 CGATGAAAGCACCACTCTTCG 59.609 52.381 0.00 0.00 32.67 3.79
2636 2813 2.413453 GACGATGAAAGCACCACTCTTC 59.587 50.000 0.00 0.00 0.00 2.87
2637 2814 2.417719 GACGATGAAAGCACCACTCTT 58.582 47.619 0.00 0.00 0.00 2.85
2638 2815 1.670087 CGACGATGAAAGCACCACTCT 60.670 52.381 0.00 0.00 0.00 3.24
2639 2816 0.716108 CGACGATGAAAGCACCACTC 59.284 55.000 0.00 0.00 0.00 3.51
2640 2817 1.291877 GCGACGATGAAAGCACCACT 61.292 55.000 0.00 0.00 0.00 4.00
2641 2818 1.132640 GCGACGATGAAAGCACCAC 59.867 57.895 0.00 0.00 0.00 4.16
2656 2833 1.807981 CCGACGTATTGCAAGGCGA 60.808 57.895 25.33 1.33 0.00 5.54
2657 2834 2.701006 CCGACGTATTGCAAGGCG 59.299 61.111 19.44 19.44 0.00 5.52
2658 2835 2.403586 GCCGACGTATTGCAAGGC 59.596 61.111 4.94 7.37 37.61 4.35
2659 2836 2.469516 GGGCCGACGTATTGCAAGG 61.470 63.158 4.94 0.00 0.00 3.61
2660 2837 2.808958 CGGGCCGACGTATTGCAAG 61.809 63.158 24.41 0.00 0.00 4.01
2661 2838 2.816083 CGGGCCGACGTATTGCAA 60.816 61.111 24.41 0.00 0.00 4.08
2662 2839 4.071875 ACGGGCCGACGTATTGCA 62.072 61.111 35.78 0.00 46.58 4.08
2663 2840 3.560278 CACGGGCCGACGTATTGC 61.560 66.667 35.78 0.00 46.75 3.56
2664 2841 3.560278 GCACGGGCCGACGTATTG 61.560 66.667 35.78 20.36 46.75 1.90
2674 2851 3.056328 GACAGAAAGGGCACGGGC 61.056 66.667 0.00 0.00 40.13 6.13
2675 2852 2.742372 CGACAGAAAGGGCACGGG 60.742 66.667 0.00 0.00 0.00 5.28
2676 2853 2.027625 GACGACAGAAAGGGCACGG 61.028 63.158 0.00 0.00 0.00 4.94
2677 2854 0.878523 TTGACGACAGAAAGGGCACG 60.879 55.000 0.00 0.00 0.00 5.34
2702 2879 1.196766 TGCTGGAGCTGGTCATCAGT 61.197 55.000 9.30 0.00 45.08 3.41
2710 2887 1.900016 TGCTGTTTGCTGGAGCTGG 60.900 57.895 0.00 0.00 43.37 4.85
2715 2892 0.105964 ACGTAGTGCTGTTTGCTGGA 59.894 50.000 0.00 0.00 42.51 3.86
2718 2895 2.519377 TGTACGTAGTGCTGTTTGCT 57.481 45.000 0.00 0.00 45.46 3.91
2723 2900 6.927381 AGTTAAAGAAATGTACGTAGTGCTGT 59.073 34.615 0.00 0.00 45.46 4.40
2724 2901 7.347508 AGTTAAAGAAATGTACGTAGTGCTG 57.652 36.000 0.00 0.00 45.46 4.41
2725 2902 7.275123 GCTAGTTAAAGAAATGTACGTAGTGCT 59.725 37.037 0.00 0.00 45.46 4.40
2726 2903 7.275123 AGCTAGTTAAAGAAATGTACGTAGTGC 59.725 37.037 0.00 0.00 45.73 4.40
2727 2904 8.684973 AGCTAGTTAAAGAAATGTACGTAGTG 57.315 34.615 0.00 0.00 45.73 2.74
2729 2906 9.953825 CAAAGCTAGTTAAAGAAATGTACGTAG 57.046 33.333 0.00 0.00 0.00 3.51
2730 2907 8.437742 GCAAAGCTAGTTAAAGAAATGTACGTA 58.562 33.333 0.00 0.00 0.00 3.57
2731 2908 7.041644 TGCAAAGCTAGTTAAAGAAATGTACGT 60.042 33.333 0.00 0.00 0.00 3.57
2732 2909 7.268447 GTGCAAAGCTAGTTAAAGAAATGTACG 59.732 37.037 0.00 0.00 0.00 3.67
2733 2910 8.073768 TGTGCAAAGCTAGTTAAAGAAATGTAC 58.926 33.333 0.00 0.00 0.00 2.90
2744 2921 5.048083 CCAAGGAAATGTGCAAAGCTAGTTA 60.048 40.000 0.00 0.00 0.00 2.24
2746 2923 3.256631 CCAAGGAAATGTGCAAAGCTAGT 59.743 43.478 0.00 0.00 0.00 2.57
2765 2942 2.354704 CCTGAAGAAGATACGTGCCCAA 60.355 50.000 0.00 0.00 0.00 4.12
2766 2943 1.207089 CCTGAAGAAGATACGTGCCCA 59.793 52.381 0.00 0.00 0.00 5.36
2790 2968 6.207221 GGGGAAAACGGATTTTACAGTTCTAA 59.793 38.462 0.00 0.00 40.03 2.10
2794 2979 3.253921 CGGGGAAAACGGATTTTACAGTT 59.746 43.478 0.00 0.00 40.03 3.16
2804 2989 0.107312 TGTTTCACGGGGAAAACGGA 60.107 50.000 7.05 0.00 46.53 4.69
2805 2990 0.309612 CTGTTTCACGGGGAAAACGG 59.690 55.000 7.05 3.71 46.53 4.44
2806 2991 1.301423 TCTGTTTCACGGGGAAAACG 58.699 50.000 7.05 1.78 46.53 3.60
2818 3003 6.273071 ACCATTTTGCAGTACTTTCTGTTTC 58.727 36.000 0.00 0.00 37.70 2.78
2834 3019 3.176552 TGACACAGCCAAACCATTTTG 57.823 42.857 0.00 0.00 41.71 2.44
2836 3021 3.795877 CTTTGACACAGCCAAACCATTT 58.204 40.909 0.00 0.00 31.13 2.32
2839 3024 0.459489 GCTTTGACACAGCCAAACCA 59.541 50.000 1.94 0.00 31.13 3.67
2845 3030 2.328099 CGGGAGCTTTGACACAGCC 61.328 63.158 9.96 2.26 38.09 4.85
2858 3043 1.459592 CTGACGTAAAAACTGCGGGAG 59.540 52.381 0.00 0.00 37.48 4.30
2859 3044 1.202557 ACTGACGTAAAAACTGCGGGA 60.203 47.619 0.00 0.00 37.48 5.14
2870 3055 2.415491 CGCTCATTCAGGACTGACGTAA 60.415 50.000 0.67 0.00 39.66 3.18
2873 3058 0.803768 CCGCTCATTCAGGACTGACG 60.804 60.000 0.67 2.21 39.66 4.35
2874 3059 0.532573 TCCGCTCATTCAGGACTGAC 59.467 55.000 0.67 0.00 39.66 3.51
2877 3062 1.489481 TCATCCGCTCATTCAGGACT 58.511 50.000 0.00 0.00 36.81 3.85
2878 3063 2.540265 ATCATCCGCTCATTCAGGAC 57.460 50.000 0.00 0.00 36.81 3.85
2882 3067 3.427909 GCAACAAATCATCCGCTCATTCA 60.428 43.478 0.00 0.00 0.00 2.57
2903 3088 2.540101 CTCGTCGACATTTTGGGATAGC 59.460 50.000 17.16 0.00 0.00 2.97
2904 3089 3.551890 CACTCGTCGACATTTTGGGATAG 59.448 47.826 17.16 0.00 0.00 2.08
2905 3090 3.193903 TCACTCGTCGACATTTTGGGATA 59.806 43.478 17.16 0.00 0.00 2.59
2948 3183 4.771590 AATACATGTGTGCCAGTGAAAG 57.228 40.909 9.11 0.00 0.00 2.62
2962 3197 6.887376 ACGCTTGTCAGTAGTAAATACATG 57.113 37.500 0.00 0.00 36.79 3.21
3002 3245 0.464373 ACAATACCGATGCCTGCCTG 60.464 55.000 0.00 0.00 0.00 4.85
3008 3251 3.068307 ACTCTCAGTACAATACCGATGCC 59.932 47.826 0.00 0.00 0.00 4.40
3009 3252 4.308899 ACTCTCAGTACAATACCGATGC 57.691 45.455 0.00 0.00 0.00 3.91
3010 3253 5.531659 ACCTACTCTCAGTACAATACCGATG 59.468 44.000 0.00 0.00 0.00 3.84
3011 3254 5.692928 ACCTACTCTCAGTACAATACCGAT 58.307 41.667 0.00 0.00 0.00 4.18
3012 3255 5.108187 ACCTACTCTCAGTACAATACCGA 57.892 43.478 0.00 0.00 0.00 4.69
3013 3256 5.050499 CGTACCTACTCTCAGTACAATACCG 60.050 48.000 0.00 0.00 36.91 4.02
3018 3279 4.394300 GCTTCGTACCTACTCTCAGTACAA 59.606 45.833 0.00 0.00 36.91 2.41
3020 3281 3.937706 TGCTTCGTACCTACTCTCAGTAC 59.062 47.826 0.00 0.00 34.37 2.73
3026 3287 5.418209 ACACTTTATGCTTCGTACCTACTCT 59.582 40.000 0.00 0.00 0.00 3.24
3068 3330 8.761497 CGCTCGAATTTCTTGTAATAATCCTAA 58.239 33.333 0.00 0.00 0.00 2.69
3069 3331 7.924412 ACGCTCGAATTTCTTGTAATAATCCTA 59.076 33.333 0.00 0.00 0.00 2.94
3070 3332 6.761714 ACGCTCGAATTTCTTGTAATAATCCT 59.238 34.615 0.00 0.00 0.00 3.24
3071 3333 6.945072 ACGCTCGAATTTCTTGTAATAATCC 58.055 36.000 0.00 0.00 0.00 3.01
3072 3334 8.114290 TCAACGCTCGAATTTCTTGTAATAATC 58.886 33.333 0.00 0.00 0.00 1.75
3073 3335 7.970384 TCAACGCTCGAATTTCTTGTAATAAT 58.030 30.769 0.00 0.00 0.00 1.28
3074 3336 7.354025 TCAACGCTCGAATTTCTTGTAATAA 57.646 32.000 0.00 0.00 0.00 1.40
3076 3338 5.856126 TCAACGCTCGAATTTCTTGTAAT 57.144 34.783 0.00 0.00 0.00 1.89
3077 3339 5.856126 ATCAACGCTCGAATTTCTTGTAA 57.144 34.783 0.00 0.00 0.00 2.41
3079 3341 4.466828 CAATCAACGCTCGAATTTCTTGT 58.533 39.130 0.00 0.00 0.00 3.16
3080 3342 3.848019 CCAATCAACGCTCGAATTTCTTG 59.152 43.478 0.00 0.00 0.00 3.02
3081 3343 3.670627 GCCAATCAACGCTCGAATTTCTT 60.671 43.478 0.00 0.00 0.00 2.52
3082 3344 2.159517 GCCAATCAACGCTCGAATTTCT 60.160 45.455 0.00 0.00 0.00 2.52
3083 3345 2.159517 AGCCAATCAACGCTCGAATTTC 60.160 45.455 0.00 0.00 0.00 2.17
3084 3346 1.812571 AGCCAATCAACGCTCGAATTT 59.187 42.857 0.00 0.00 0.00 1.82
3085 3347 1.453155 AGCCAATCAACGCTCGAATT 58.547 45.000 0.00 0.00 0.00 2.17
3088 3357 1.298157 CCAAGCCAATCAACGCTCGA 61.298 55.000 0.00 0.00 33.09 4.04
3092 3361 1.080569 CACCCAAGCCAATCAACGC 60.081 57.895 0.00 0.00 0.00 4.84
3098 3367 2.284112 CTGCCCACCCAAGCCAAT 60.284 61.111 0.00 0.00 0.00 3.16
3115 3384 3.849911 TCCGAGACAAACAGATCATGTC 58.150 45.455 10.98 10.98 43.00 3.06
3140 3410 0.176680 AGAATAGTGCACCCTGCTCG 59.823 55.000 14.63 0.00 45.31 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.