Multiple sequence alignment - TraesCS7B01G274200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G274200 chr7B 100.000 3229 0 0 1 3229 503471521 503474749 0.000000e+00 5963
1 TraesCS7B01G274200 chr7B 91.329 1038 66 15 997 2024 504244681 504243658 0.000000e+00 1397
2 TraesCS7B01G274200 chr7B 90.786 369 20 4 2020 2388 504237787 504237433 6.270000e-132 481
3 TraesCS7B01G274200 chr7B 83.611 360 29 11 30 362 504246484 504246128 8.700000e-81 311
4 TraesCS7B01G274200 chr7B 77.866 506 90 21 1675 2166 643292159 643291662 8.760000e-76 294
5 TraesCS7B01G274200 chr7B 77.255 510 88 25 1673 2165 643295732 643295234 1.140000e-69 274
6 TraesCS7B01G274200 chr7B 88.235 102 10 2 1131 1231 503506435 503506535 1.570000e-23 121
7 TraesCS7B01G274200 chr7D 93.271 1917 101 13 1316 3229 478327852 478329743 0.000000e+00 2800
8 TraesCS7B01G274200 chr7D 90.893 1120 65 20 1342 2459 478572298 478571214 0.000000e+00 1469
9 TraesCS7B01G274200 chr7D 87.404 1040 72 26 262 1253 478326793 478327821 0.000000e+00 1140
10 TraesCS7B01G274200 chr7D 83.010 877 85 30 378 1230 478573209 478572373 0.000000e+00 736
11 TraesCS7B01G274200 chr7D 94.545 165 7 2 1 165 478326423 478326585 1.490000e-63 254
12 TraesCS7B01G274200 chr7D 82.237 304 18 15 92 360 478573500 478573198 2.510000e-56 230
13 TraesCS7B01G274200 chr7D 85.864 191 18 4 2465 2648 478569922 478569734 9.140000e-46 195
14 TraesCS7B01G274200 chr7D 92.241 116 6 3 151 265 478326628 478326741 9.270000e-36 161
15 TraesCS7B01G274200 chr7D 84.746 118 16 2 1115 1231 478370386 478370502 2.040000e-22 117
16 TraesCS7B01G274200 chr7A 89.923 1300 85 25 1351 2642 516997907 516996646 0.000000e+00 1633
17 TraesCS7B01G274200 chr7A 90.411 1095 59 16 1317 2402 517414533 517413476 0.000000e+00 1399
18 TraesCS7B01G274200 chr7A 84.144 1028 69 35 280 1258 517415525 517414543 0.000000e+00 909
19 TraesCS7B01G274200 chr7A 79.280 1250 135 66 43 1247 516999145 516997975 0.000000e+00 760
20 TraesCS7B01G274200 chr7A 78.585 509 85 23 1673 2166 670946630 670946131 6.720000e-82 315
21 TraesCS7B01G274200 chr7A 84.980 253 26 5 2391 2642 517413259 517413018 2.490000e-61 246
22 TraesCS7B01G274200 chr7A 92.982 171 8 2 1 169 517416863 517416695 2.490000e-61 246
23 TraesCS7B01G274200 chr7A 91.919 99 7 1 171 269 517416569 517416472 1.560000e-28 137
24 TraesCS7B01G274200 chr6A 77.232 448 82 16 1675 2109 23896092 23895652 8.950000e-61 244
25 TraesCS7B01G274200 chr6A 83.838 198 32 0 1354 1551 109135962 109136159 4.250000e-44 189
26 TraesCS7B01G274200 chr3A 84.848 198 30 0 1354 1551 113922265 113922068 1.960000e-47 200
27 TraesCS7B01G274200 chr6D 83.838 198 32 0 1354 1551 90922940 90923137 4.250000e-44 189
28 TraesCS7B01G274200 chr6D 85.294 102 15 0 1123 1224 90922746 90922847 4.410000e-19 106
29 TraesCS7B01G274200 chr6B 83.920 199 30 2 1354 1551 173391986 173392183 4.250000e-44 189
30 TraesCS7B01G274200 chr6B 86.275 102 14 0 1123 1224 173391805 173391906 9.470000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G274200 chr7B 503471521 503474749 3228 False 5963.00 5963 100.00000 1 3229 1 chr7B.!!$F1 3228
1 TraesCS7B01G274200 chr7B 504243658 504246484 2826 True 854.00 1397 87.47000 30 2024 2 chr7B.!!$R2 1994
2 TraesCS7B01G274200 chr7B 643291662 643295732 4070 True 284.00 294 77.56050 1673 2166 2 chr7B.!!$R3 493
3 TraesCS7B01G274200 chr7D 478326423 478329743 3320 False 1088.75 2800 91.86525 1 3229 4 chr7D.!!$F2 3228
4 TraesCS7B01G274200 chr7D 478569734 478573500 3766 True 657.50 1469 85.50100 92 2648 4 chr7D.!!$R1 2556
5 TraesCS7B01G274200 chr7A 516996646 516999145 2499 True 1196.50 1633 84.60150 43 2642 2 chr7A.!!$R2 2599
6 TraesCS7B01G274200 chr7A 517413018 517416863 3845 True 587.40 1399 88.88720 1 2642 5 chr7A.!!$R3 2641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 3121 0.1078 ACCTCTAGCTAGTCGCGTCA 60.108 55.0 20.1 0.0 45.59 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2893 6583 0.258774 TTATTGGGAGCCCCTTCAGC 59.741 55.0 11.1 0.0 45.7 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 1.103803 GCGGGTGACAGTGAGATAGA 58.896 55.000 0.00 0.00 0.00 1.98
80 81 1.202313 GCGGGTGACAGTGAGATAGAC 60.202 57.143 0.00 0.00 0.00 2.59
240 400 1.655099 CAAGTTGCAATGTAATGCCGC 59.345 47.619 0.59 0.00 45.83 6.53
326 1448 3.126858 GCAATACGGATGCTTCAAACTGA 59.873 43.478 1.64 0.00 40.64 3.41
335 1457 1.396301 GCTTCAAACTGAGAGATGGCG 59.604 52.381 0.00 0.00 0.00 5.69
344 1466 7.224753 TCAAACTGAGAGATGGCGATAAAATAC 59.775 37.037 0.00 0.00 0.00 1.89
369 1499 1.373999 GAGTGCTGCTTGACTCGCT 60.374 57.895 0.00 0.00 29.86 4.93
371 1501 0.534412 AGTGCTGCTTGACTCGCTAT 59.466 50.000 0.00 0.00 0.00 2.97
406 1556 4.201970 TGTTGTTTCCGATTGAACCTGAAC 60.202 41.667 0.00 0.00 31.05 3.18
458 2488 1.003355 ATGGCTAGCAACAGCACGT 60.003 52.632 18.24 0.00 43.67 4.49
460 2490 0.389817 TGGCTAGCAACAGCACGTAG 60.390 55.000 18.24 0.00 43.67 3.51
592 2630 1.002257 CCATGCACAGCCTACACCA 60.002 57.895 0.00 0.00 0.00 4.17
619 2658 1.154205 GCACAGCAACACGTCTCTGT 61.154 55.000 0.00 0.00 40.08 3.41
789 2878 4.853050 ATCCAGCTGCTGCGGCTC 62.853 66.667 31.80 10.61 43.23 4.70
803 2894 4.459089 GCTCCAGAGTCCGGCCAC 62.459 72.222 2.24 0.00 0.00 5.01
931 3068 1.750930 CACCCTATGCATCTCGCCT 59.249 57.895 0.19 0.00 41.33 5.52
932 3069 0.320247 CACCCTATGCATCTCGCCTC 60.320 60.000 0.19 0.00 41.33 4.70
933 3070 0.760567 ACCCTATGCATCTCGCCTCA 60.761 55.000 0.19 0.00 41.33 3.86
980 3121 0.107800 ACCTCTAGCTAGTCGCGTCA 60.108 55.000 20.10 0.00 45.59 4.35
1064 3206 2.645567 CGTGCTCTGTGTCCTCGT 59.354 61.111 0.00 0.00 0.00 4.18
1277 3419 6.264970 TCTGTTCCATCAAATGTGTTCATCAA 59.735 34.615 0.00 0.00 32.56 2.57
1281 3423 6.995364 TCCATCAAATGTGTTCATCAAATGT 58.005 32.000 0.00 0.00 32.56 2.71
1282 3424 6.869388 TCCATCAAATGTGTTCATCAAATGTG 59.131 34.615 0.00 0.00 31.79 3.21
1287 3429 5.787953 ATGTGTTCATCAAATGTGTTCCA 57.212 34.783 0.00 0.00 0.00 3.53
1288 3430 4.930963 TGTGTTCATCAAATGTGTTCCAC 58.069 39.130 0.00 0.00 34.56 4.02
1289 3431 3.974401 GTGTTCATCAAATGTGTTCCACG 59.026 43.478 0.00 0.00 37.14 4.94
1290 3432 3.879892 TGTTCATCAAATGTGTTCCACGA 59.120 39.130 0.00 0.00 37.14 4.35
1605 3756 0.589708 GCTGACCCGTACAAAACACC 59.410 55.000 0.00 0.00 0.00 4.16
1624 3777 2.210116 CCACTACACGTTCTGCACTTT 58.790 47.619 0.00 0.00 0.00 2.66
1625 3778 2.032894 CCACTACACGTTCTGCACTTTG 60.033 50.000 0.00 0.00 0.00 2.77
1636 3789 4.893424 TCTGCACTTTGTTTTACTGGAC 57.107 40.909 0.00 0.00 0.00 4.02
1642 3797 4.062991 ACTTTGTTTTACTGGACTAGCCG 58.937 43.478 0.00 0.00 40.66 5.52
1880 4035 1.166531 GGTCGCAGTGCCAGTTCTTT 61.167 55.000 10.11 0.00 0.00 2.52
2015 4176 2.659244 GACGGGTTCGACAACGCA 60.659 61.111 5.32 0.00 43.97 5.24
2156 4317 2.031919 TTCGTCACGGCCATGCTT 59.968 55.556 2.24 0.00 0.00 3.91
2310 4474 4.927425 GTCAGGTTCACGTATGTATGTGTT 59.073 41.667 11.08 0.00 42.38 3.32
2311 4475 6.094719 GTCAGGTTCACGTATGTATGTGTTA 58.905 40.000 11.08 0.87 42.38 2.41
2425 4818 5.782255 CGTTGGTCGTAAAAGTGTATCATC 58.218 41.667 0.00 0.00 34.52 2.92
2430 4823 7.100409 TGGTCGTAAAAGTGTATCATCATCAA 58.900 34.615 0.00 0.00 0.00 2.57
2447 4840 9.569122 TCATCATCAACATCATCAATACAGAAT 57.431 29.630 0.00 0.00 0.00 2.40
2472 6155 3.890756 TGGGATGGTGCAATCATCATAAC 59.109 43.478 23.96 15.05 43.71 1.89
2524 6207 4.546829 ATGTACGGTGGTGTTCACTATT 57.453 40.909 2.98 0.00 45.38 1.73
2609 6299 8.046708 TGTGATGTATACCATACTTCTTGCTTT 58.953 33.333 0.00 0.00 32.56 3.51
2611 6301 8.892723 TGATGTATACCATACTTCTTGCTTTTG 58.107 33.333 0.00 0.00 32.56 2.44
2613 6303 7.398829 TGTATACCATACTTCTTGCTTTTGGA 58.601 34.615 0.00 0.00 0.00 3.53
2614 6304 7.552687 TGTATACCATACTTCTTGCTTTTGGAG 59.447 37.037 0.00 0.00 0.00 3.86
2681 6371 3.921021 GCACGAGTCTGCATACCATATAC 59.079 47.826 8.99 0.00 37.11 1.47
2683 6373 5.394802 CACGAGTCTGCATACCATATACTC 58.605 45.833 0.00 0.00 0.00 2.59
2686 6376 6.209589 ACGAGTCTGCATACCATATACTCAAT 59.790 38.462 0.00 0.00 31.88 2.57
2695 6385 9.664332 GCATACCATATACTCAATGAGAAAGAT 57.336 33.333 18.20 4.61 33.32 2.40
2723 6413 8.136563 AGAAAACCCCTACAAAAGTTTACAAA 57.863 30.769 0.00 0.00 32.38 2.83
2740 6430 3.565307 ACAAACACTCCACATTGACCAT 58.435 40.909 0.00 0.00 0.00 3.55
2741 6431 4.724399 ACAAACACTCCACATTGACCATA 58.276 39.130 0.00 0.00 0.00 2.74
2754 6444 6.094048 CACATTGACCATACTCCACCTAAAAG 59.906 42.308 0.00 0.00 0.00 2.27
2768 6458 4.330074 CACCTAAAAGCACATTCTACTCCG 59.670 45.833 0.00 0.00 0.00 4.63
2771 6461 2.698855 AAGCACATTCTACTCCGCAT 57.301 45.000 0.00 0.00 0.00 4.73
2784 6474 2.125310 CGCATTACTCGCCCACCA 60.125 61.111 0.00 0.00 0.00 4.17
2791 6481 0.330604 TACTCGCCCACCACTCTACT 59.669 55.000 0.00 0.00 0.00 2.57
2795 6485 1.025812 CGCCCACCACTCTACTCTAG 58.974 60.000 0.00 0.00 0.00 2.43
2796 6486 0.747852 GCCCACCACTCTACTCTAGC 59.252 60.000 0.00 0.00 0.00 3.42
2802 6492 2.239150 ACCACTCTACTCTAGCGAGGAA 59.761 50.000 0.00 0.00 41.71 3.36
2840 6530 8.725148 GTCCTTTGATAGCATAAATGTCTATGG 58.275 37.037 9.93 6.78 31.80 2.74
2843 6533 5.178061 TGATAGCATAAATGTCTATGGCCG 58.822 41.667 0.00 0.00 31.80 6.13
2846 6536 3.138304 GCATAAATGTCTATGGCCGACA 58.862 45.455 13.45 13.45 44.59 4.35
2855 6545 1.204704 CTATGGCCGACAACAGACTGA 59.795 52.381 10.08 0.00 0.00 3.41
2861 6551 1.202533 CCGACAACAGACTGACAGGTT 60.203 52.381 10.08 0.00 0.00 3.50
2862 6552 1.860950 CGACAACAGACTGACAGGTTG 59.139 52.381 10.08 16.78 44.57 3.77
2896 6586 3.474570 CGGAGGGGAAGAGGGCTG 61.475 72.222 0.00 0.00 0.00 4.85
2897 6587 2.041265 GGAGGGGAAGAGGGCTGA 59.959 66.667 0.00 0.00 0.00 4.26
2936 6626 3.071206 TGAGTGGAGGAGGCTCGC 61.071 66.667 8.69 2.81 32.32 5.03
2983 6673 4.393155 CCTGGTGCACTAGCCGCA 62.393 66.667 23.74 7.82 41.13 5.69
2993 6683 0.321671 ACTAGCCGCACACAAGTCAT 59.678 50.000 0.00 0.00 0.00 3.06
3008 6698 6.423905 ACACAAGTCATCATACAAGTGTGTAC 59.576 38.462 4.41 0.00 44.69 2.90
3013 6703 8.621532 AGTCATCATACAAGTGTGTACAAAAT 57.378 30.769 0.00 0.00 42.99 1.82
3014 6704 9.719355 AGTCATCATACAAGTGTGTACAAAATA 57.281 29.630 0.00 0.00 42.99 1.40
3168 6858 6.064060 TGTATGGCCCATTCTAAAATGAGAG 58.936 40.000 0.00 0.00 44.25 3.20
3176 6866 7.013655 GCCCATTCTAAAATGAGAGCTATTCAA 59.986 37.037 4.66 0.00 44.25 2.69
3214 6904 0.322322 AGAACAATCCCCGTGCGTTA 59.678 50.000 0.00 0.00 0.00 3.18
3218 6908 0.167251 CAATCCCCGTGCGTTACAAC 59.833 55.000 0.00 0.00 0.00 3.32
3219 6909 0.250381 AATCCCCGTGCGTTACAACA 60.250 50.000 0.00 0.00 0.00 3.33
3220 6910 0.035820 ATCCCCGTGCGTTACAACAT 60.036 50.000 0.00 0.00 0.00 2.71
3221 6911 0.951525 TCCCCGTGCGTTACAACATG 60.952 55.000 0.00 0.00 0.00 3.21
3225 6915 2.869801 CCCGTGCGTTACAACATGATAT 59.130 45.455 0.00 0.00 0.00 1.63
3227 6917 4.508492 CCCGTGCGTTACAACATGATATAA 59.492 41.667 0.00 0.00 0.00 0.98
3228 6918 5.006844 CCCGTGCGTTACAACATGATATAAA 59.993 40.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.036875 GTGCTAAACTGGGGTCAGCT 59.963 55.000 0.00 0.00 44.59 4.24
167 168 9.747898 AGTCTGGAGATAGGACAATAATACTAG 57.252 37.037 0.00 0.00 32.98 2.57
240 400 4.333649 TGATCGTAGAGTTGTACGTAAGGG 59.666 45.833 0.00 0.00 44.94 3.95
326 1448 8.807118 TCATTCTAGTATTTTATCGCCATCTCT 58.193 33.333 0.00 0.00 0.00 3.10
335 1457 8.600449 AGCAGCACTCATTCTAGTATTTTATC 57.400 34.615 0.00 0.00 0.00 1.75
344 1466 3.859443 AGTCAAGCAGCACTCATTCTAG 58.141 45.455 0.00 0.00 0.00 2.43
385 1515 4.204012 AGTTCAGGTTCAATCGGAAACAA 58.796 39.130 0.00 0.00 46.07 2.83
388 1518 5.646360 GGATAAGTTCAGGTTCAATCGGAAA 59.354 40.000 0.00 0.00 37.23 3.13
406 1556 1.211457 AGACTTGCCTGCCTGGATAAG 59.789 52.381 0.00 0.00 38.35 1.73
458 2488 1.888018 GTACTGCTCCACCACGCTA 59.112 57.895 0.00 0.00 0.00 4.26
460 2490 2.809601 CGTACTGCTCCACCACGC 60.810 66.667 0.00 0.00 0.00 5.34
517 2547 1.128692 GCGGAAATTTCGTGGACTGAG 59.871 52.381 11.95 0.00 0.00 3.35
552 2582 0.976073 GGGTCAGTCCGGATTCCTCA 60.976 60.000 7.81 0.00 37.00 3.86
592 2630 1.449423 TGTTGCTGTGCACGTCACT 60.449 52.632 13.13 0.00 45.81 3.41
619 2658 5.708544 TCCCCGAGTATTATAAGAGGAACA 58.291 41.667 0.00 0.00 0.00 3.18
621 2660 7.867160 ATTTCCCCGAGTATTATAAGAGGAA 57.133 36.000 0.00 0.00 0.00 3.36
622 2661 7.121759 CGTATTTCCCCGAGTATTATAAGAGGA 59.878 40.741 0.00 0.00 0.00 3.71
657 2704 9.353431 TCATTGCATGTGTTGGTTATCTTATAT 57.647 29.630 0.00 0.00 0.00 0.86
661 2708 5.981088 TCATTGCATGTGTTGGTTATCTT 57.019 34.783 0.00 0.00 0.00 2.40
662 2709 6.153170 TGAATCATTGCATGTGTTGGTTATCT 59.847 34.615 0.00 0.00 0.00 1.98
719 2804 2.106683 GGCTTGGCACGACGCTAAT 61.107 57.895 0.00 0.00 40.71 1.73
789 2878 3.691342 TTCGTGGCCGGACTCTGG 61.691 66.667 9.82 0.00 33.95 3.86
931 3068 2.046285 TGCGAGCTCGATGAGGTGA 61.046 57.895 38.74 8.66 40.67 4.02
932 3069 1.875813 GTGCGAGCTCGATGAGGTG 60.876 63.158 38.74 8.52 40.67 4.00
933 3070 2.492090 GTGCGAGCTCGATGAGGT 59.508 61.111 38.74 0.00 43.43 3.85
980 3121 1.896220 TGCTTCTTCGGCTTTGATGT 58.104 45.000 0.00 0.00 0.00 3.06
1281 3423 4.927978 AAAATCCAACAATCGTGGAACA 57.072 36.364 0.00 0.00 35.74 3.18
1282 3424 4.849383 CGTAAAATCCAACAATCGTGGAAC 59.151 41.667 0.00 0.00 35.13 3.62
1287 3429 4.685628 ACGTACGTAAAATCCAACAATCGT 59.314 37.500 21.41 0.00 0.00 3.73
1288 3430 5.010749 CACGTACGTAAAATCCAACAATCG 58.989 41.667 22.34 0.00 0.00 3.34
1289 3431 4.784550 GCACGTACGTAAAATCCAACAATC 59.215 41.667 22.34 0.00 0.00 2.67
1290 3432 4.667161 CGCACGTACGTAAAATCCAACAAT 60.667 41.667 22.34 0.00 0.00 2.71
1605 3756 2.607635 ACAAAGTGCAGAACGTGTAGTG 59.392 45.455 0.00 0.00 32.19 2.74
1624 3777 2.289195 CCACGGCTAGTCCAGTAAAACA 60.289 50.000 4.43 0.00 34.01 2.83
1625 3778 2.344025 CCACGGCTAGTCCAGTAAAAC 58.656 52.381 4.43 0.00 34.01 2.43
1642 3797 2.125753 CTCAGCCGAGTCAGCCAC 60.126 66.667 0.00 0.00 34.29 5.01
2156 4317 3.089874 AGCAGGCCGCCCATCTTA 61.090 61.111 14.64 0.00 44.04 2.10
2310 4474 9.378551 GGTGTTCTTCTTCATACATACACATTA 57.621 33.333 0.00 0.00 37.08 1.90
2311 4475 7.882791 TGGTGTTCTTCTTCATACATACACATT 59.117 33.333 0.00 0.00 37.08 2.71
2430 4823 9.239551 CATCCCATTATTCTGTATTGATGATGT 57.760 33.333 0.00 0.00 31.12 3.06
2447 4840 4.181799 TGATGATTGCACCATCCCATTA 57.818 40.909 19.73 4.31 39.60 1.90
2524 6207 2.945440 GCCAATCAGTCAGCCACCATAA 60.945 50.000 0.00 0.00 0.00 1.90
2662 6352 5.629079 TGAGTATATGGTATGCAGACTCG 57.371 43.478 11.87 0.00 35.65 4.18
2667 6357 8.837788 TTTCTCATTGAGTATATGGTATGCAG 57.162 34.615 13.23 0.00 0.00 4.41
2681 6371 8.246871 GGGGTTTTCTTTATCTTTCTCATTGAG 58.753 37.037 7.38 7.38 0.00 3.02
2683 6373 8.127150 AGGGGTTTTCTTTATCTTTCTCATTG 57.873 34.615 0.00 0.00 0.00 2.82
2686 6376 7.751646 TGTAGGGGTTTTCTTTATCTTTCTCA 58.248 34.615 0.00 0.00 0.00 3.27
2695 6385 9.252635 TGTAAACTTTTGTAGGGGTTTTCTTTA 57.747 29.630 0.00 0.00 34.40 1.85
2703 6393 5.953548 AGTGTTTGTAAACTTTTGTAGGGGT 59.046 36.000 8.74 0.00 39.59 4.95
2723 6413 3.055094 GGAGTATGGTCAATGTGGAGTGT 60.055 47.826 0.00 0.00 0.00 3.55
2740 6430 5.499004 AGAATGTGCTTTTAGGTGGAGTA 57.501 39.130 0.00 0.00 0.00 2.59
2741 6431 4.373156 AGAATGTGCTTTTAGGTGGAGT 57.627 40.909 0.00 0.00 0.00 3.85
2754 6444 3.458189 AGTAATGCGGAGTAGAATGTGC 58.542 45.455 0.00 0.00 0.00 4.57
2768 6458 1.078426 AGTGGTGGGCGAGTAATGC 60.078 57.895 0.00 0.00 0.00 3.56
2771 6461 1.180029 GTAGAGTGGTGGGCGAGTAA 58.820 55.000 0.00 0.00 0.00 2.24
2784 6474 3.547746 CCTTTCCTCGCTAGAGTAGAGT 58.452 50.000 0.00 0.00 42.86 3.24
2791 6481 3.596940 ATAGACCCTTTCCTCGCTAGA 57.403 47.619 0.00 0.00 0.00 2.43
2795 6485 2.937149 GACAAATAGACCCTTTCCTCGC 59.063 50.000 0.00 0.00 0.00 5.03
2796 6486 3.197983 AGGACAAATAGACCCTTTCCTCG 59.802 47.826 0.00 0.00 31.96 4.63
2802 6492 6.122964 GCTATCAAAGGACAAATAGACCCTT 58.877 40.000 0.00 0.00 40.46 3.95
2840 6530 0.946221 CCTGTCAGTCTGTTGTCGGC 60.946 60.000 0.00 0.00 0.00 5.54
2843 6533 2.213499 CCAACCTGTCAGTCTGTTGTC 58.787 52.381 15.18 0.00 0.00 3.18
2846 6536 1.507140 TCCCAACCTGTCAGTCTGTT 58.493 50.000 0.00 0.00 0.00 3.16
2855 6545 2.411765 CTTCGGCCTTCCCAACCTGT 62.412 60.000 0.00 0.00 0.00 4.00
2892 6582 1.645402 TATTGGGAGCCCCTTCAGCC 61.645 60.000 11.10 0.00 45.70 4.85
2893 6583 0.258774 TTATTGGGAGCCCCTTCAGC 59.741 55.000 11.10 0.00 45.70 4.26
2894 6584 1.752084 GCTTATTGGGAGCCCCTTCAG 60.752 57.143 11.10 4.20 45.70 3.02
2895 6585 0.258774 GCTTATTGGGAGCCCCTTCA 59.741 55.000 11.10 0.00 45.70 3.02
2896 6586 0.553333 AGCTTATTGGGAGCCCCTTC 59.447 55.000 11.10 0.00 45.70 3.46
2897 6587 0.553333 GAGCTTATTGGGAGCCCCTT 59.447 55.000 11.10 2.63 45.70 3.95
2908 6598 3.960102 CTCCTCCACTCAGAGAGCTTATT 59.040 47.826 3.79 0.00 35.82 1.40
2936 6626 2.743752 CCGCGTTGACATGCTCCAG 61.744 63.158 4.92 0.00 32.03 3.86
2983 6673 5.368145 ACACACTTGTATGATGACTTGTGT 58.632 37.500 0.00 0.00 41.05 3.72
3127 6817 4.358851 CATACATTTGGCCCATTAACACG 58.641 43.478 0.00 0.00 0.00 4.49
3191 6881 1.653151 GCACGGGGATTGTTCTAGTC 58.347 55.000 0.00 0.00 0.00 2.59
3193 6883 0.108329 ACGCACGGGGATTGTTCTAG 60.108 55.000 0.00 0.00 0.00 2.43
3203 6893 0.951525 TCATGTTGTAACGCACGGGG 60.952 55.000 0.00 0.00 0.00 5.73
3204 6894 1.083489 ATCATGTTGTAACGCACGGG 58.917 50.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.