Multiple sequence alignment - TraesCS7B01G274000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G274000 chr7B 100.000 2549 0 0 1 2549 503342316 503344864 0.000000e+00 4708
1 TraesCS7B01G274000 chr7B 93.154 1373 63 11 605 1953 54520694 54519329 0.000000e+00 1986
2 TraesCS7B01G274000 chr7B 97.162 599 16 1 2 599 120521140 120521738 0.000000e+00 1011
3 TraesCS7B01G274000 chr7B 97.157 598 17 0 2 599 230952804 230953401 0.000000e+00 1011
4 TraesCS7B01G274000 chr7B 94.975 597 30 0 1953 2549 54518754 54518158 0.000000e+00 937
5 TraesCS7B01G274000 chr7B 94.807 597 30 1 1953 2549 503451475 503452070 0.000000e+00 929
6 TraesCS7B01G274000 chr7B 94.482 598 32 1 1953 2549 129567443 129566846 0.000000e+00 920
7 TraesCS7B01G274000 chr2D 94.199 1379 55 4 600 1953 610930657 610932035 0.000000e+00 2080
8 TraesCS7B01G274000 chr2D 93.388 242 12 3 1715 1953 435213918 435214158 3.120000e-94 355
9 TraesCS7B01G274000 chr2D 93.004 243 12 4 1715 1953 299993296 299993537 1.450000e-92 350
10 TraesCS7B01G274000 chr4A 93.198 1382 62 9 595 1949 738255679 738257055 0.000000e+00 2002
11 TraesCS7B01G274000 chr4A 93.438 1341 53 12 636 1949 598584614 598583282 0.000000e+00 1956
12 TraesCS7B01G274000 chr4A 92.975 242 12 5 1715 1953 603145878 603145639 5.220000e-92 348
13 TraesCS7B01G274000 chr6B 92.934 1387 73 3 592 1953 527993585 527992199 0.000000e+00 1995
14 TraesCS7B01G274000 chr6B 93.854 602 32 3 1953 2549 271093705 271093104 0.000000e+00 902
15 TraesCS7B01G274000 chr1B 92.899 1380 72 4 600 1953 582666189 582664810 0.000000e+00 1982
16 TraesCS7B01G274000 chr1B 96.990 598 18 0 2 599 263605734 263605137 0.000000e+00 1005
17 TraesCS7B01G274000 chr1B 96.990 598 18 0 2 599 355016384 355015787 0.000000e+00 1005
18 TraesCS7B01G274000 chr1B 94.807 597 30 1 1953 2549 575858376 575857781 0.000000e+00 929
19 TraesCS7B01G274000 chr1B 94.186 602 30 2 1953 2549 130647139 130647740 0.000000e+00 913
20 TraesCS7B01G274000 chr1B 93.854 602 32 3 1953 2549 616701883 616701282 0.000000e+00 902
21 TraesCS7B01G274000 chr1B 94.088 592 35 0 1958 2549 372944966 372944375 0.000000e+00 900
22 TraesCS7B01G274000 chr4B 92.754 1380 76 3 598 1953 534922953 534921574 0.000000e+00 1973
23 TraesCS7B01G274000 chr4B 92.442 1376 80 4 600 1953 546331516 546330143 0.000000e+00 1943
24 TraesCS7B01G274000 chr4B 94.027 1038 41 3 937 1953 656537814 656536777 0.000000e+00 1554
25 TraesCS7B01G274000 chr4B 96.990 598 18 0 2 599 286005241 286005838 0.000000e+00 1005
26 TraesCS7B01G274000 chr4B 95.477 597 27 0 1953 2549 642721451 642720855 0.000000e+00 953
27 TraesCS7B01G274000 chr4B 94.640 597 32 0 1953 2549 100009642 100009046 0.000000e+00 926
28 TraesCS7B01G274000 chr4B 94.305 597 34 0 1953 2549 656536206 656535610 0.000000e+00 915
29 TraesCS7B01G274000 chr4B 94.137 597 35 0 1953 2549 80651699 80651103 0.000000e+00 909
30 TraesCS7B01G274000 chr4B 93.970 597 36 0 1953 2549 657231530 657230934 0.000000e+00 904
31 TraesCS7B01G274000 chr4B 93.802 597 37 0 1953 2549 648879449 648878853 0.000000e+00 898
32 TraesCS7B01G274000 chr4B 93.667 600 35 2 1953 2549 89563717 89564316 0.000000e+00 894
33 TraesCS7B01G274000 chr4B 93.478 598 39 0 1952 2549 585996882 585997479 0.000000e+00 889
34 TraesCS7B01G274000 chr3B 92.213 1387 76 7 595 1953 792939413 792940795 0.000000e+00 1934
35 TraesCS7B01G274000 chr3B 94.472 597 32 1 1953 2549 804663007 804663602 0.000000e+00 918
36 TraesCS7B01G274000 chrUn 91.737 1416 60 23 595 1953 60558704 60560119 0.000000e+00 1914
37 TraesCS7B01G274000 chrUn 92.664 1036 53 4 937 1949 37355410 37354375 0.000000e+00 1471
38 TraesCS7B01G274000 chrUn 92.664 1036 53 4 937 1949 287430937 287429902 0.000000e+00 1471
39 TraesCS7B01G274000 chrUn 93.189 602 36 3 1953 2549 60560698 60561299 0.000000e+00 880
40 TraesCS7B01G274000 chrUn 91.820 599 47 1 1953 2549 37353797 37353199 0.000000e+00 833
41 TraesCS7B01G274000 chrUn 91.820 599 47 1 1953 2549 287429324 287428726 0.000000e+00 833
42 TraesCS7B01G274000 chrUn 92.105 570 36 2 1987 2548 93724282 93723714 0.000000e+00 795
43 TraesCS7B01G274000 chrUn 92.091 569 34 3 1988 2548 302376021 302376586 0.000000e+00 791
44 TraesCS7B01G274000 chrUn 91.449 573 33 5 1987 2548 88422502 88423069 0.000000e+00 773
45 TraesCS7B01G274000 chrUn 91.274 573 34 5 1987 2548 284637032 284637599 0.000000e+00 767
46 TraesCS7B01G274000 chrUn 91.274 573 34 5 1987 2548 443236731 443236164 0.000000e+00 767
47 TraesCS7B01G274000 chrUn 90.925 573 36 5 1987 2548 231574982 231575549 0.000000e+00 756
48 TraesCS7B01G274000 chrUn 90.409 563 39 8 1987 2548 43127339 43126791 0.000000e+00 726
49 TraesCS7B01G274000 chrUn 92.593 243 12 5 1715 1953 93725161 93724921 6.750000e-91 344
50 TraesCS7B01G274000 chrUn 91.770 243 14 5 1715 1953 175763458 175763698 1.460000e-87 333
51 TraesCS7B01G274000 chrUn 91.770 243 14 6 1715 1953 353552469 353552229 1.460000e-87 333
52 TraesCS7B01G274000 chrUn 91.736 242 16 3 1715 1953 368601967 368602207 1.460000e-87 333
53 TraesCS7B01G274000 chrUn 95.631 206 8 1 1749 1953 302375245 302375450 1.890000e-86 329
54 TraesCS7B01G274000 chrUn 91.701 241 13 6 1716 1951 88505651 88505889 6.800000e-86 327
55 TraesCS7B01G274000 chrUn 91.358 243 15 5 1715 1953 406119632 406119872 6.800000e-86 327
56 TraesCS7B01G274000 chr5B 97.492 598 15 0 2 599 166970159 166969562 0.000000e+00 1022
57 TraesCS7B01G274000 chr5B 97.329 599 14 2 2 599 635961513 635960916 0.000000e+00 1016
58 TraesCS7B01G274000 chr5B 97.157 598 17 0 2 599 377466413 377465816 0.000000e+00 1011
59 TraesCS7B01G274000 chr2B 96.833 600 15 3 2 599 364979591 364980188 0.000000e+00 1000
60 TraesCS7B01G274000 chr2B 95.310 597 28 0 1953 2549 62452909 62453505 0.000000e+00 948
61 TraesCS7B01G274000 chr2B 94.975 597 30 0 1953 2549 666073796 666073200 0.000000e+00 937
62 TraesCS7B01G274000 chr6D 92.105 570 32 5 1987 2548 52519527 52518963 0.000000e+00 791
63 TraesCS7B01G274000 chr6D 92.562 242 14 3 1715 1953 277566066 277565826 6.750000e-91 344
64 TraesCS7B01G274000 chr6D 92.181 243 14 4 1715 1953 52520403 52520162 3.140000e-89 339
65 TraesCS7B01G274000 chr6D 92.181 243 14 4 1715 1953 109964552 109964793 3.140000e-89 339
66 TraesCS7B01G274000 chr5D 92.077 568 32 5 1987 2546 324811521 324812083 0.000000e+00 787
67 TraesCS7B01G274000 chr5D 91.930 570 33 5 1987 2548 559992019 559991455 0.000000e+00 785
68 TraesCS7B01G274000 chr5D 93.004 243 12 4 1715 1953 482330823 482330582 1.450000e-92 350
69 TraesCS7B01G274000 chr5D 92.975 242 12 5 1715 1953 336263967 336264206 5.220000e-92 348
70 TraesCS7B01G274000 chr5D 92.562 242 14 4 1715 1953 336309630 336309390 6.750000e-91 344
71 TraesCS7B01G274000 chr5D 92.181 243 14 4 1715 1953 324810634 324810875 3.140000e-89 339
72 TraesCS7B01G274000 chr5D 92.181 243 14 4 1715 1953 559992904 559992663 3.140000e-89 339
73 TraesCS7B01G274000 chr1A 91.623 573 32 5 1987 2548 71841835 71842402 0.000000e+00 778
74 TraesCS7B01G274000 chr1A 91.449 573 33 5 1987 2548 72557070 72557637 0.000000e+00 773
75 TraesCS7B01G274000 chr7D 93.033 244 11 4 1715 1953 577660118 577659876 4.030000e-93 351
76 TraesCS7B01G274000 chr7D 92.623 244 12 6 1715 1953 604917259 604917501 1.880000e-91 346
77 TraesCS7B01G274000 chr7D 92.593 243 12 6 1715 1953 574725776 574725536 6.750000e-91 344
78 TraesCS7B01G274000 chr7A 92.975 242 13 4 1715 1953 112660534 112660294 1.450000e-92 350
79 TraesCS7B01G274000 chr3D 92.593 243 12 6 1715 1953 475107990 475108230 6.750000e-91 344
80 TraesCS7B01G274000 chr3D 92.213 244 13 5 1715 1953 410900936 410901178 8.730000e-90 340


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G274000 chr7B 503342316 503344864 2548 False 4708.0 4708 100.0000 1 2549 1 chr7B.!!$F3 2548
1 TraesCS7B01G274000 chr7B 54518158 54520694 2536 True 1461.5 1986 94.0645 605 2549 2 chr7B.!!$R2 1944
2 TraesCS7B01G274000 chr7B 120521140 120521738 598 False 1011.0 1011 97.1620 2 599 1 chr7B.!!$F1 597
3 TraesCS7B01G274000 chr7B 230952804 230953401 597 False 1011.0 1011 97.1570 2 599 1 chr7B.!!$F2 597
4 TraesCS7B01G274000 chr7B 503451475 503452070 595 False 929.0 929 94.8070 1953 2549 1 chr7B.!!$F4 596
5 TraesCS7B01G274000 chr7B 129566846 129567443 597 True 920.0 920 94.4820 1953 2549 1 chr7B.!!$R1 596
6 TraesCS7B01G274000 chr2D 610930657 610932035 1378 False 2080.0 2080 94.1990 600 1953 1 chr2D.!!$F3 1353
7 TraesCS7B01G274000 chr4A 738255679 738257055 1376 False 2002.0 2002 93.1980 595 1949 1 chr4A.!!$F1 1354
8 TraesCS7B01G274000 chr4A 598583282 598584614 1332 True 1956.0 1956 93.4380 636 1949 1 chr4A.!!$R1 1313
9 TraesCS7B01G274000 chr6B 527992199 527993585 1386 True 1995.0 1995 92.9340 592 1953 1 chr6B.!!$R2 1361
10 TraesCS7B01G274000 chr6B 271093104 271093705 601 True 902.0 902 93.8540 1953 2549 1 chr6B.!!$R1 596
11 TraesCS7B01G274000 chr1B 582664810 582666189 1379 True 1982.0 1982 92.8990 600 1953 1 chr1B.!!$R5 1353
12 TraesCS7B01G274000 chr1B 263605137 263605734 597 True 1005.0 1005 96.9900 2 599 1 chr1B.!!$R1 597
13 TraesCS7B01G274000 chr1B 355015787 355016384 597 True 1005.0 1005 96.9900 2 599 1 chr1B.!!$R2 597
14 TraesCS7B01G274000 chr1B 575857781 575858376 595 True 929.0 929 94.8070 1953 2549 1 chr1B.!!$R4 596
15 TraesCS7B01G274000 chr1B 130647139 130647740 601 False 913.0 913 94.1860 1953 2549 1 chr1B.!!$F1 596
16 TraesCS7B01G274000 chr1B 616701282 616701883 601 True 902.0 902 93.8540 1953 2549 1 chr1B.!!$R6 596
17 TraesCS7B01G274000 chr1B 372944375 372944966 591 True 900.0 900 94.0880 1958 2549 1 chr1B.!!$R3 591
18 TraesCS7B01G274000 chr4B 534921574 534922953 1379 True 1973.0 1973 92.7540 598 1953 1 chr4B.!!$R3 1355
19 TraesCS7B01G274000 chr4B 546330143 546331516 1373 True 1943.0 1943 92.4420 600 1953 1 chr4B.!!$R4 1353
20 TraesCS7B01G274000 chr4B 656535610 656537814 2204 True 1234.5 1554 94.1660 937 2549 2 chr4B.!!$R8 1612
21 TraesCS7B01G274000 chr4B 286005241 286005838 597 False 1005.0 1005 96.9900 2 599 1 chr4B.!!$F2 597
22 TraesCS7B01G274000 chr4B 642720855 642721451 596 True 953.0 953 95.4770 1953 2549 1 chr4B.!!$R5 596
23 TraesCS7B01G274000 chr4B 100009046 100009642 596 True 926.0 926 94.6400 1953 2549 1 chr4B.!!$R2 596
24 TraesCS7B01G274000 chr4B 80651103 80651699 596 True 909.0 909 94.1370 1953 2549 1 chr4B.!!$R1 596
25 TraesCS7B01G274000 chr4B 657230934 657231530 596 True 904.0 904 93.9700 1953 2549 1 chr4B.!!$R7 596
26 TraesCS7B01G274000 chr4B 648878853 648879449 596 True 898.0 898 93.8020 1953 2549 1 chr4B.!!$R6 596
27 TraesCS7B01G274000 chr4B 89563717 89564316 599 False 894.0 894 93.6670 1953 2549 1 chr4B.!!$F1 596
28 TraesCS7B01G274000 chr4B 585996882 585997479 597 False 889.0 889 93.4780 1952 2549 1 chr4B.!!$F3 597
29 TraesCS7B01G274000 chr3B 792939413 792940795 1382 False 1934.0 1934 92.2130 595 1953 1 chr3B.!!$F1 1358
30 TraesCS7B01G274000 chr3B 804663007 804663602 595 False 918.0 918 94.4720 1953 2549 1 chr3B.!!$F2 596
31 TraesCS7B01G274000 chrUn 60558704 60561299 2595 False 1397.0 1914 92.4630 595 2549 2 chrUn.!!$F8 1954
32 TraesCS7B01G274000 chrUn 37353199 37355410 2211 True 1152.0 1471 92.2420 937 2549 2 chrUn.!!$R4 1612
33 TraesCS7B01G274000 chrUn 287428726 287430937 2211 True 1152.0 1471 92.2420 937 2549 2 chrUn.!!$R6 1612
34 TraesCS7B01G274000 chrUn 88422502 88423069 567 False 773.0 773 91.4490 1987 2548 1 chrUn.!!$F1 561
35 TraesCS7B01G274000 chrUn 284637032 284637599 567 False 767.0 767 91.2740 1987 2548 1 chrUn.!!$F5 561
36 TraesCS7B01G274000 chrUn 443236164 443236731 567 True 767.0 767 91.2740 1987 2548 1 chrUn.!!$R3 561
37 TraesCS7B01G274000 chrUn 231574982 231575549 567 False 756.0 756 90.9250 1987 2548 1 chrUn.!!$F4 561
38 TraesCS7B01G274000 chrUn 43126791 43127339 548 True 726.0 726 90.4090 1987 2548 1 chrUn.!!$R1 561
39 TraesCS7B01G274000 chrUn 93723714 93725161 1447 True 569.5 795 92.3490 1715 2548 2 chrUn.!!$R5 833
40 TraesCS7B01G274000 chrUn 302375245 302376586 1341 False 560.0 791 93.8610 1749 2548 2 chrUn.!!$F9 799
41 TraesCS7B01G274000 chr5B 166969562 166970159 597 True 1022.0 1022 97.4920 2 599 1 chr5B.!!$R1 597
42 TraesCS7B01G274000 chr5B 635960916 635961513 597 True 1016.0 1016 97.3290 2 599 1 chr5B.!!$R3 597
43 TraesCS7B01G274000 chr5B 377465816 377466413 597 True 1011.0 1011 97.1570 2 599 1 chr5B.!!$R2 597
44 TraesCS7B01G274000 chr2B 364979591 364980188 597 False 1000.0 1000 96.8330 2 599 1 chr2B.!!$F2 597
45 TraesCS7B01G274000 chr2B 62452909 62453505 596 False 948.0 948 95.3100 1953 2549 1 chr2B.!!$F1 596
46 TraesCS7B01G274000 chr2B 666073200 666073796 596 True 937.0 937 94.9750 1953 2549 1 chr2B.!!$R1 596
47 TraesCS7B01G274000 chr6D 52518963 52520403 1440 True 565.0 791 92.1430 1715 2548 2 chr6D.!!$R2 833
48 TraesCS7B01G274000 chr5D 324810634 324812083 1449 False 563.0 787 92.1290 1715 2546 2 chr5D.!!$F2 831
49 TraesCS7B01G274000 chr5D 559991455 559992904 1449 True 562.0 785 92.0555 1715 2548 2 chr5D.!!$R3 833
50 TraesCS7B01G274000 chr1A 71841835 71842402 567 False 778.0 778 91.6230 1987 2548 1 chr1A.!!$F1 561
51 TraesCS7B01G274000 chr1A 72557070 72557637 567 False 773.0 773 91.4490 1987 2548 1 chr1A.!!$F2 561


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 634 0.550914 TTTGCCCTCAGTGGTGTCTT 59.449 50.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2806 0.54341 TGCACTCCCTTCCCTACGAA 60.543 55.0 0.0 0.0 0.0 3.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 202 4.282703 TCTTTCTTTACCGTGCTTCCTAGT 59.717 41.667 0.00 0.00 0.00 2.57
288 290 9.739276 AGGTTCAATCTCTACATCATTGTTTTA 57.261 29.630 0.00 0.00 37.28 1.52
632 634 0.550914 TTTGCCCTCAGTGGTGTCTT 59.449 50.000 0.00 0.00 0.00 3.01
687 689 1.002502 AGTTTTGCCCCTAGTCCGC 60.003 57.895 0.00 0.00 0.00 5.54
695 697 4.063967 CCTAGTCCGCGTGCACCA 62.064 66.667 12.15 0.00 0.00 4.17
789 792 3.865446 GCAGAGGCAGCCAATTTTATTT 58.135 40.909 15.80 0.00 40.72 1.40
964 970 0.617535 TAAGCTAGCTGTGGAGGGCA 60.618 55.000 20.16 0.00 0.00 5.36
983 1018 2.192979 GGCGGCATTGAGATCCCA 59.807 61.111 3.07 0.00 0.00 4.37
988 1023 1.811558 CGGCATTGAGATCCCATTCGT 60.812 52.381 0.00 0.00 0.00 3.85
1043 1078 4.519437 CTCGCGGATGCAGAGCCA 62.519 66.667 6.13 0.00 42.97 4.75
1083 1118 3.553437 CTTCGTCTGTCCGCGGTGT 62.553 63.158 27.15 0.00 0.00 4.16
1284 1319 1.759445 GATGCTCTGGCCAAGACTCTA 59.241 52.381 7.01 0.00 37.74 2.43
1397 1432 3.318875 CGAAGCACGCACTGACAA 58.681 55.556 0.00 0.00 34.51 3.18
1428 1463 4.216257 GCTGTTGAGCTTAGGATGTTGAAA 59.784 41.667 0.00 0.00 42.52 2.69
1439 1474 8.357402 GCTTAGGATGTTGAAAAAGAAGGTTAA 58.643 33.333 0.00 0.00 0.00 2.01
1509 1544 5.772004 TGGGCATTTGTAGGTATGGTAATT 58.228 37.500 0.00 0.00 0.00 1.40
1843 1940 1.471684 GAAAATGTGCCTCAGCTCTGG 59.528 52.381 0.00 0.00 40.80 3.86
1844 1941 0.403271 AAATGTGCCTCAGCTCTGGT 59.597 50.000 3.75 0.00 40.80 4.00
1845 1942 1.279496 AATGTGCCTCAGCTCTGGTA 58.721 50.000 3.75 0.00 40.80 3.25
1846 1943 0.829333 ATGTGCCTCAGCTCTGGTAG 59.171 55.000 3.75 0.00 40.80 3.18
1847 1944 0.251787 TGTGCCTCAGCTCTGGTAGA 60.252 55.000 3.75 0.00 40.80 2.59
1848 1945 0.459489 GTGCCTCAGCTCTGGTAGAG 59.541 60.000 1.52 1.52 45.04 2.43
1949 2048 4.436113 AGGGTGGAAAATGCACAAAAAT 57.564 36.364 4.42 0.00 40.73 1.82
2072 2806 0.536687 TTCACACCTCCTCGTCGTCT 60.537 55.000 0.00 0.00 0.00 4.18
2288 3022 0.036388 GGGTGAACATCCTCAGCGAA 60.036 55.000 0.00 0.00 43.32 4.70
2293 3027 0.976641 AACATCCTCAGCGAACCTCA 59.023 50.000 0.00 0.00 0.00 3.86
2503 3248 1.535226 GGTCGTTTGGGTGTTTGAAGC 60.535 52.381 0.00 0.00 0.00 3.86
2505 3250 2.614983 GTCGTTTGGGTGTTTGAAGCTA 59.385 45.455 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 2.183478 TGAGGATTTTGAGCGCTTCA 57.817 45.000 13.26 8.56 0.00 3.02
100 101 2.679837 TGATGAGGATTTTGAGCGCTTC 59.320 45.455 13.26 4.01 0.00 3.86
394 396 4.048970 ACCTACTGTAGACACACCTGAT 57.951 45.455 16.22 0.00 0.00 2.90
632 634 1.032014 GAGGGCAAAACTGAGCACAA 58.968 50.000 0.00 0.00 36.38 3.33
687 689 1.151777 ACAGAACGAGTTGGTGCACG 61.152 55.000 11.45 0.00 0.00 5.34
695 697 2.354821 GCCAAAGTTCACAGAACGAGTT 59.645 45.455 4.43 0.00 0.00 3.01
872 876 2.890474 GTGGTCACCGCCGCTATG 60.890 66.667 0.00 0.00 36.19 2.23
945 951 0.617535 TGCCCTCCACAGCTAGCTTA 60.618 55.000 16.46 0.00 0.00 3.09
964 970 2.203070 GGATCTCAATGCCGCCGT 60.203 61.111 0.00 0.00 0.00 5.68
988 1023 1.478510 GGAAGACATGGAGCTCGAAGA 59.521 52.381 7.83 0.00 0.00 2.87
1083 1118 4.847516 CGATCAACGCTCGCCCGA 62.848 66.667 1.63 0.00 34.51 5.14
1284 1319 6.579666 TGCTCTTCTTGCAGTTCATTTATT 57.420 33.333 0.00 0.00 35.31 1.40
1428 1463 7.721399 TGATCTTCAAGCTTCTTAACCTTCTTT 59.279 33.333 0.00 0.00 0.00 2.52
1439 1474 2.305343 AGTGCCTGATCTTCAAGCTTCT 59.695 45.455 0.00 0.00 35.00 2.85
1455 1490 2.100749 GCAAATGGGTATTGGTAGTGCC 59.899 50.000 0.00 0.00 37.90 5.01
1509 1544 4.991153 TTTCAACATTACAACCAGTGCA 57.009 36.364 0.00 0.00 0.00 4.57
1599 1634 9.701355 CATTTAAACAACTTTGACCAACATTTC 57.299 29.630 0.00 0.00 0.00 2.17
1843 1940 3.512724 TGGCACTAGGTGTAAACCTCTAC 59.487 47.826 8.24 0.00 41.12 2.59
1844 1941 3.781808 TGGCACTAGGTGTAAACCTCTA 58.218 45.455 8.24 0.00 41.12 2.43
1845 1942 2.616524 TGGCACTAGGTGTAAACCTCT 58.383 47.619 8.24 0.00 41.12 3.69
1846 1943 3.412237 TTGGCACTAGGTGTAAACCTC 57.588 47.619 8.24 0.00 41.12 3.85
1847 1944 3.868619 TTTGGCACTAGGTGTAAACCT 57.131 42.857 10.20 10.20 43.62 3.50
1848 1945 6.578163 TTATTTTGGCACTAGGTGTAAACC 57.422 37.500 0.00 0.00 35.75 3.27
1849 1946 8.301002 TCATTTATTTTGGCACTAGGTGTAAAC 58.699 33.333 0.00 0.00 35.75 2.01
1949 2048 6.565811 GCTTTTCTATGTCGTGTCATGTCAAA 60.566 38.462 0.00 0.00 0.00 2.69
2072 2806 0.543410 TGCACTCCCTTCCCTACGAA 60.543 55.000 0.00 0.00 0.00 3.85
2106 2840 3.833070 ACCAACTACGAGAACATCTTCCT 59.167 43.478 0.00 0.00 0.00 3.36
2293 3027 2.464403 GGCTATGCCCACCTCCCAT 61.464 63.158 0.00 0.00 44.06 4.00
2488 3233 4.102524 TCTCTCTAGCTTCAAACACCCAAA 59.897 41.667 0.00 0.00 0.00 3.28
2503 3248 4.398988 CCAGATCCGATCCATTCTCTCTAG 59.601 50.000 4.67 0.00 0.00 2.43
2505 3250 3.164268 CCAGATCCGATCCATTCTCTCT 58.836 50.000 4.67 0.00 0.00 3.10



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.