Multiple sequence alignment - TraesCS7B01G273800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G273800 chr7B 100.000 3566 0 0 1 3566 502907467 502911032 0.000000e+00 6586
1 TraesCS7B01G273800 chr7B 93.135 1646 108 2 966 2611 503106651 503108291 0.000000e+00 2409
2 TraesCS7B01G273800 chr7B 90.171 1750 144 13 985 2712 654252898 654251155 0.000000e+00 2254
3 TraesCS7B01G273800 chr7B 97.975 395 8 0 226 620 502896948 502896554 0.000000e+00 686
4 TraesCS7B01G273800 chr7B 98.684 228 3 0 1 228 502907119 502906892 4.290000e-109 405
5 TraesCS7B01G273800 chr7B 98.529 68 1 0 539 606 502907246 502907179 1.740000e-23 121
6 TraesCS7B01G273800 chr7D 95.035 2276 81 8 621 2868 477865125 477867396 0.000000e+00 3548
7 TraesCS7B01G273800 chr7D 91.191 1805 126 19 827 2611 477968585 477970376 0.000000e+00 2422
8 TraesCS7B01G273800 chr7D 91.877 1588 117 3 972 2550 585538056 585539640 0.000000e+00 2207
9 TraesCS7B01G273800 chr7D 93.248 548 28 9 3024 3566 477867720 477868263 0.000000e+00 798
10 TraesCS7B01G273800 chr7A 93.941 2129 86 13 656 2760 518506008 518503899 0.000000e+00 3177
11 TraesCS7B01G273800 chr7A 90.960 1803 129 19 830 2611 517895766 517893977 0.000000e+00 2396
12 TraesCS7B01G273800 chr7A 88.951 1792 148 22 972 2716 675574094 675575882 0.000000e+00 2167
13 TraesCS7B01G273800 chr7A 91.449 573 39 9 3001 3566 518503133 518502564 0.000000e+00 778
14 TraesCS7B01G273800 chr6A 97.903 620 12 1 1 620 426640671 426641289 0.000000e+00 1072
15 TraesCS7B01G273800 chr6A 98.780 82 1 0 539 620 426640450 426640369 2.870000e-31 147
16 TraesCS7B01G273800 chr4B 97.581 620 15 0 1 620 281896333 281895714 0.000000e+00 1062
17 TraesCS7B01G273800 chr4B 97.647 85 2 0 536 620 281896551 281896635 2.870000e-31 147
18 TraesCS7B01G273800 chr4A 91.438 619 31 14 4 618 743440200 743439600 0.000000e+00 830
19 TraesCS7B01G273800 chr4A 95.161 62 3 0 536 597 743440423 743440484 8.150000e-17 99
20 TraesCS7B01G273800 chr5D 74.909 1375 288 44 1206 2547 371862276 371863626 3.090000e-160 575
21 TraesCS7B01G273800 chr2A 72.714 1345 312 41 1247 2550 72813925 72812595 1.990000e-107 399
22 TraesCS7B01G273800 chr2A 85.714 168 18 4 2735 2896 170139120 170138953 4.730000e-39 172
23 TraesCS7B01G273800 chr2A 81.579 190 29 5 2723 2909 99790667 99790481 6.170000e-33 152
24 TraesCS7B01G273800 chr5B 83.210 405 60 4 199 596 68812827 68813230 7.280000e-97 364
25 TraesCS7B01G273800 chr5B 92.857 112 5 1 61 169 68811913 68812024 3.680000e-35 159
26 TraesCS7B01G273800 chr1D 91.026 156 12 1 2745 2898 106848895 106848740 3.610000e-50 209
27 TraesCS7B01G273800 chr2B 84.884 172 16 7 2735 2896 88906148 88905977 7.920000e-37 165
28 TraesCS7B01G273800 chr6B 88.550 131 9 3 2768 2898 39369700 39369576 1.710000e-33 154
29 TraesCS7B01G273800 chr2D 82.955 176 22 6 2740 2907 100188373 100188198 6.170000e-33 152
30 TraesCS7B01G273800 chr6D 86.014 143 10 5 2774 2907 187022698 187022839 1.030000e-30 145
31 TraesCS7B01G273800 chr3A 80.723 166 24 6 2735 2898 71236690 71236531 4.830000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G273800 chr7B 502907467 502911032 3565 False 6586.0 6586 100.0000 1 3566 1 chr7B.!!$F1 3565
1 TraesCS7B01G273800 chr7B 503106651 503108291 1640 False 2409.0 2409 93.1350 966 2611 1 chr7B.!!$F2 1645
2 TraesCS7B01G273800 chr7B 654251155 654252898 1743 True 2254.0 2254 90.1710 985 2712 1 chr7B.!!$R2 1727
3 TraesCS7B01G273800 chr7D 477968585 477970376 1791 False 2422.0 2422 91.1910 827 2611 1 chr7D.!!$F1 1784
4 TraesCS7B01G273800 chr7D 585538056 585539640 1584 False 2207.0 2207 91.8770 972 2550 1 chr7D.!!$F2 1578
5 TraesCS7B01G273800 chr7D 477865125 477868263 3138 False 2173.0 3548 94.1415 621 3566 2 chr7D.!!$F3 2945
6 TraesCS7B01G273800 chr7A 517893977 517895766 1789 True 2396.0 2396 90.9600 830 2611 1 chr7A.!!$R1 1781
7 TraesCS7B01G273800 chr7A 675574094 675575882 1788 False 2167.0 2167 88.9510 972 2716 1 chr7A.!!$F1 1744
8 TraesCS7B01G273800 chr7A 518502564 518506008 3444 True 1977.5 3177 92.6950 656 3566 2 chr7A.!!$R2 2910
9 TraesCS7B01G273800 chr6A 426640671 426641289 618 False 1072.0 1072 97.9030 1 620 1 chr6A.!!$F1 619
10 TraesCS7B01G273800 chr4B 281895714 281896333 619 True 1062.0 1062 97.5810 1 620 1 chr4B.!!$R1 619
11 TraesCS7B01G273800 chr4A 743439600 743440200 600 True 830.0 830 91.4380 4 618 1 chr4A.!!$R1 614
12 TraesCS7B01G273800 chr5D 371862276 371863626 1350 False 575.0 575 74.9090 1206 2547 1 chr5D.!!$F1 1341
13 TraesCS7B01G273800 chr2A 72812595 72813925 1330 True 399.0 399 72.7140 1247 2550 1 chr2A.!!$R1 1303
14 TraesCS7B01G273800 chr5B 68811913 68813230 1317 False 261.5 364 88.0335 61 596 2 chr5B.!!$F1 535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 1180 0.036388 GGAACTGCGGAGGTCAATCA 60.036 55.0 24.10 0.0 37.71 2.57 F
509 1285 0.042880 CGAGCACTCGTCTACGCTAG 60.043 60.0 11.82 0.0 46.99 3.42 F
2133 3036 0.036010 CCGTGTGGGAGCAGATCTTT 60.036 55.0 0.00 0.0 38.47 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 3036 1.080093 CTTCACGAGCCAGCCGTAA 60.080 57.895 5.97 0.0 38.29 3.18 R
2349 3259 1.214305 ATGCCTGCCTGGGGTTCTTA 61.214 55.000 0.00 0.0 36.00 2.10 R
2980 4134 0.034059 CACCTCGACAGCCTTTGAGT 59.966 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
369 1145 4.471726 CGACGGGCGCTTCGTAGT 62.472 66.667 23.88 8.98 41.22 2.73
370 1146 2.879462 GACGGGCGCTTCGTAGTG 60.879 66.667 23.88 0.00 41.22 2.74
371 1147 4.430765 ACGGGCGCTTCGTAGTGG 62.431 66.667 22.94 0.19 39.22 4.00
375 1151 4.789075 GCGCTTCGTAGTGGCGGA 62.789 66.667 0.00 0.00 45.16 5.54
376 1152 2.126228 CGCTTCGTAGTGGCGGAA 60.126 61.111 0.00 0.00 42.74 4.30
377 1153 1.735198 CGCTTCGTAGTGGCGGAAA 60.735 57.895 0.00 0.00 42.74 3.13
378 1154 1.286354 CGCTTCGTAGTGGCGGAAAA 61.286 55.000 0.00 0.00 42.74 2.29
379 1155 0.869730 GCTTCGTAGTGGCGGAAAAA 59.130 50.000 0.00 0.00 0.00 1.94
397 1173 1.897560 AAAAAGAGGAACTGCGGAGG 58.102 50.000 9.36 0.00 41.55 4.30
398 1174 0.765510 AAAAGAGGAACTGCGGAGGT 59.234 50.000 9.36 0.00 41.55 3.85
399 1175 0.321996 AAAGAGGAACTGCGGAGGTC 59.678 55.000 14.43 14.43 41.55 3.85
400 1176 0.832135 AAGAGGAACTGCGGAGGTCA 60.832 55.000 24.10 0.00 41.55 4.02
401 1177 0.832135 AGAGGAACTGCGGAGGTCAA 60.832 55.000 24.10 0.00 41.55 3.18
402 1178 0.250513 GAGGAACTGCGGAGGTCAAT 59.749 55.000 24.10 11.53 41.55 2.57
403 1179 0.250513 AGGAACTGCGGAGGTCAATC 59.749 55.000 24.10 6.46 37.71 2.67
404 1180 0.036388 GGAACTGCGGAGGTCAATCA 60.036 55.000 24.10 0.00 37.71 2.57
405 1181 1.610624 GGAACTGCGGAGGTCAATCAA 60.611 52.381 24.10 0.00 37.71 2.57
406 1182 1.464997 GAACTGCGGAGGTCAATCAAC 59.535 52.381 18.02 0.00 35.77 3.18
407 1183 0.687354 ACTGCGGAGGTCAATCAACT 59.313 50.000 9.36 0.00 0.00 3.16
408 1184 1.081892 CTGCGGAGGTCAATCAACTG 58.918 55.000 0.00 0.00 0.00 3.16
409 1185 0.955428 TGCGGAGGTCAATCAACTGC 60.955 55.000 0.00 0.00 0.00 4.40
410 1186 0.955428 GCGGAGGTCAATCAACTGCA 60.955 55.000 0.00 0.00 33.71 4.41
411 1187 0.798776 CGGAGGTCAATCAACTGCAC 59.201 55.000 0.00 0.00 0.00 4.57
412 1188 1.877680 CGGAGGTCAATCAACTGCACA 60.878 52.381 0.00 0.00 0.00 4.57
413 1189 1.808945 GGAGGTCAATCAACTGCACAG 59.191 52.381 0.00 0.00 0.00 3.66
414 1190 1.198637 GAGGTCAATCAACTGCACAGC 59.801 52.381 0.00 0.00 0.00 4.40
415 1191 0.110056 GGTCAATCAACTGCACAGCG 60.110 55.000 0.00 0.00 0.00 5.18
416 1192 0.110056 GTCAATCAACTGCACAGCGG 60.110 55.000 0.00 0.00 41.29 5.52
417 1193 1.443194 CAATCAACTGCACAGCGGC 60.443 57.895 0.00 0.00 38.71 6.53
418 1194 1.898094 AATCAACTGCACAGCGGCA 60.898 52.632 1.45 1.02 42.53 5.69
419 1195 2.133742 AATCAACTGCACAGCGGCAC 62.134 55.000 1.45 0.00 39.25 5.01
420 1196 3.585020 CAACTGCACAGCGGCACA 61.585 61.111 1.45 0.00 39.25 4.57
421 1197 2.595463 AACTGCACAGCGGCACAT 60.595 55.556 1.45 0.00 39.25 3.21
422 1198 2.620112 AACTGCACAGCGGCACATC 61.620 57.895 1.45 0.00 39.25 3.06
423 1199 3.051479 CTGCACAGCGGCACATCA 61.051 61.111 1.45 0.00 39.25 3.07
424 1200 2.360225 TGCACAGCGGCACATCAT 60.360 55.556 1.45 0.00 39.25 2.45
425 1201 2.319011 CTGCACAGCGGCACATCATC 62.319 60.000 1.45 0.00 39.25 2.92
426 1202 2.110967 GCACAGCGGCACATCATCT 61.111 57.895 1.45 0.00 0.00 2.90
427 1203 1.651240 GCACAGCGGCACATCATCTT 61.651 55.000 1.45 0.00 0.00 2.40
428 1204 1.655484 CACAGCGGCACATCATCTTA 58.345 50.000 1.45 0.00 0.00 2.10
429 1205 1.328680 CACAGCGGCACATCATCTTAC 59.671 52.381 1.45 0.00 0.00 2.34
430 1206 1.208052 ACAGCGGCACATCATCTTACT 59.792 47.619 1.45 0.00 0.00 2.24
431 1207 1.863454 CAGCGGCACATCATCTTACTC 59.137 52.381 1.45 0.00 0.00 2.59
432 1208 1.482182 AGCGGCACATCATCTTACTCA 59.518 47.619 1.45 0.00 0.00 3.41
433 1209 1.863454 GCGGCACATCATCTTACTCAG 59.137 52.381 0.00 0.00 0.00 3.35
434 1210 1.863454 CGGCACATCATCTTACTCAGC 59.137 52.381 0.00 0.00 0.00 4.26
435 1211 2.482664 CGGCACATCATCTTACTCAGCT 60.483 50.000 0.00 0.00 0.00 4.24
436 1212 2.871022 GGCACATCATCTTACTCAGCTG 59.129 50.000 7.63 7.63 0.00 4.24
437 1213 2.287373 GCACATCATCTTACTCAGCTGC 59.713 50.000 9.47 0.00 0.00 5.25
438 1214 3.794717 CACATCATCTTACTCAGCTGCT 58.205 45.455 9.47 0.00 0.00 4.24
439 1215 4.190001 CACATCATCTTACTCAGCTGCTT 58.810 43.478 9.47 0.00 0.00 3.91
440 1216 4.634883 CACATCATCTTACTCAGCTGCTTT 59.365 41.667 9.47 0.00 0.00 3.51
441 1217 5.123502 CACATCATCTTACTCAGCTGCTTTT 59.876 40.000 9.47 0.00 0.00 2.27
442 1218 5.353678 ACATCATCTTACTCAGCTGCTTTTC 59.646 40.000 9.47 0.00 0.00 2.29
443 1219 3.928992 TCATCTTACTCAGCTGCTTTTCG 59.071 43.478 9.47 0.00 0.00 3.46
444 1220 3.660501 TCTTACTCAGCTGCTTTTCGA 57.339 42.857 9.47 0.00 0.00 3.71
445 1221 4.193826 TCTTACTCAGCTGCTTTTCGAT 57.806 40.909 9.47 0.00 0.00 3.59
446 1222 4.569943 TCTTACTCAGCTGCTTTTCGATT 58.430 39.130 9.47 0.00 0.00 3.34
447 1223 4.389992 TCTTACTCAGCTGCTTTTCGATTG 59.610 41.667 9.47 0.00 0.00 2.67
448 1224 2.498167 ACTCAGCTGCTTTTCGATTGT 58.502 42.857 9.47 0.00 0.00 2.71
449 1225 2.225019 ACTCAGCTGCTTTTCGATTGTG 59.775 45.455 9.47 0.00 0.00 3.33
450 1226 2.481568 CTCAGCTGCTTTTCGATTGTGA 59.518 45.455 9.47 0.00 0.00 3.58
451 1227 3.076621 TCAGCTGCTTTTCGATTGTGAT 58.923 40.909 9.47 0.00 0.00 3.06
452 1228 3.120095 TCAGCTGCTTTTCGATTGTGATG 60.120 43.478 9.47 0.00 0.00 3.07
453 1229 3.076621 AGCTGCTTTTCGATTGTGATGA 58.923 40.909 0.00 0.00 0.00 2.92
454 1230 3.503363 AGCTGCTTTTCGATTGTGATGAA 59.497 39.130 0.00 0.00 0.00 2.57
455 1231 3.605486 GCTGCTTTTCGATTGTGATGAAC 59.395 43.478 0.00 0.00 0.00 3.18
456 1232 4.614535 GCTGCTTTTCGATTGTGATGAACT 60.615 41.667 0.00 0.00 0.00 3.01
457 1233 5.390885 GCTGCTTTTCGATTGTGATGAACTA 60.391 40.000 0.00 0.00 0.00 2.24
458 1234 6.169419 TGCTTTTCGATTGTGATGAACTAG 57.831 37.500 0.00 0.00 0.00 2.57
459 1235 5.700832 TGCTTTTCGATTGTGATGAACTAGT 59.299 36.000 0.00 0.00 0.00 2.57
460 1236 6.017933 GCTTTTCGATTGTGATGAACTAGTG 58.982 40.000 0.00 0.00 0.00 2.74
461 1237 6.480524 TTTTCGATTGTGATGAACTAGTGG 57.519 37.500 0.00 0.00 0.00 4.00
462 1238 3.521560 TCGATTGTGATGAACTAGTGGC 58.478 45.455 0.00 0.00 0.00 5.01
463 1239 3.056179 TCGATTGTGATGAACTAGTGGCA 60.056 43.478 0.00 0.00 0.00 4.92
464 1240 3.308053 CGATTGTGATGAACTAGTGGCAG 59.692 47.826 0.00 0.00 0.00 4.85
465 1241 4.507710 GATTGTGATGAACTAGTGGCAGA 58.492 43.478 0.00 0.00 0.00 4.26
466 1242 4.558226 TTGTGATGAACTAGTGGCAGAT 57.442 40.909 0.00 0.00 0.00 2.90
467 1243 3.865446 TGTGATGAACTAGTGGCAGATG 58.135 45.455 0.00 0.00 0.00 2.90
468 1244 3.515104 TGTGATGAACTAGTGGCAGATGA 59.485 43.478 0.00 0.00 0.00 2.92
469 1245 3.868077 GTGATGAACTAGTGGCAGATGAC 59.132 47.826 0.00 0.00 0.00 3.06
470 1246 3.118629 TGATGAACTAGTGGCAGATGACC 60.119 47.826 0.00 0.00 0.00 4.02
471 1247 2.256306 TGAACTAGTGGCAGATGACCA 58.744 47.619 0.00 0.00 33.84 4.02
472 1248 2.637382 TGAACTAGTGGCAGATGACCAA 59.363 45.455 0.00 0.00 39.39 3.67
473 1249 3.265791 GAACTAGTGGCAGATGACCAAG 58.734 50.000 0.00 0.00 39.39 3.61
474 1250 1.065854 ACTAGTGGCAGATGACCAAGC 60.066 52.381 0.00 0.00 39.39 4.01
475 1251 1.209019 CTAGTGGCAGATGACCAAGCT 59.791 52.381 0.00 0.00 39.39 3.74
476 1252 0.322277 AGTGGCAGATGACCAAGCTG 60.322 55.000 0.00 0.00 39.39 4.24
478 1254 2.789917 GCAGATGACCAAGCTGCG 59.210 61.111 0.00 0.00 44.52 5.18
479 1255 2.789917 CAGATGACCAAGCTGCGC 59.210 61.111 0.00 0.00 0.00 6.09
480 1256 2.437359 AGATGACCAAGCTGCGCC 60.437 61.111 4.18 0.00 0.00 6.53
481 1257 3.869272 GATGACCAAGCTGCGCCG 61.869 66.667 4.18 0.00 0.00 6.46
507 1283 2.785921 CGAGCACTCGTCTACGCT 59.214 61.111 11.82 0.00 46.99 5.07
508 1284 2.004445 CGAGCACTCGTCTACGCTA 58.996 57.895 11.82 0.00 46.99 4.26
509 1285 0.042880 CGAGCACTCGTCTACGCTAG 60.043 60.000 11.82 0.00 46.99 3.42
510 1286 1.288350 GAGCACTCGTCTACGCTAGA 58.712 55.000 0.00 0.00 39.60 2.43
511 1287 1.664659 GAGCACTCGTCTACGCTAGAA 59.335 52.381 0.00 0.00 36.40 2.10
512 1288 2.082231 AGCACTCGTCTACGCTAGAAA 58.918 47.619 0.00 0.00 36.40 2.52
513 1289 2.683867 AGCACTCGTCTACGCTAGAAAT 59.316 45.455 0.00 0.00 36.40 2.17
514 1290 3.875727 AGCACTCGTCTACGCTAGAAATA 59.124 43.478 0.00 0.00 36.40 1.40
515 1291 3.967470 GCACTCGTCTACGCTAGAAATAC 59.033 47.826 0.00 0.00 36.40 1.89
516 1292 4.495349 GCACTCGTCTACGCTAGAAATACA 60.495 45.833 0.00 0.00 36.40 2.29
517 1293 5.566623 CACTCGTCTACGCTAGAAATACAA 58.433 41.667 0.00 0.00 36.40 2.41
518 1294 6.200100 CACTCGTCTACGCTAGAAATACAAT 58.800 40.000 0.00 0.00 36.40 2.71
519 1295 6.691818 CACTCGTCTACGCTAGAAATACAATT 59.308 38.462 0.00 0.00 36.40 2.32
520 1296 7.220300 CACTCGTCTACGCTAGAAATACAATTT 59.780 37.037 0.00 0.00 36.40 1.82
521 1297 8.400947 ACTCGTCTACGCTAGAAATACAATTTA 58.599 33.333 0.00 0.00 36.40 1.40
522 1298 9.229784 CTCGTCTACGCTAGAAATACAATTTAA 57.770 33.333 0.00 0.00 36.40 1.52
523 1299 9.740239 TCGTCTACGCTAGAAATACAATTTAAT 57.260 29.630 0.00 0.00 36.40 1.40
540 1316 8.139989 ACAATTTAATTAATCAGATCTGCTGGC 58.860 33.333 18.36 0.00 44.98 4.85
541 1317 6.639632 TTTAATTAATCAGATCTGCTGGCC 57.360 37.500 18.36 0.00 44.98 5.36
542 1318 2.645838 TTAATCAGATCTGCTGGCCC 57.354 50.000 18.36 0.00 44.98 5.80
543 1319 1.510492 TAATCAGATCTGCTGGCCCA 58.490 50.000 18.36 0.00 44.98 5.36
544 1320 0.106819 AATCAGATCTGCTGGCCCAC 60.107 55.000 18.36 0.00 44.98 4.61
545 1321 1.276859 ATCAGATCTGCTGGCCCACA 61.277 55.000 18.36 0.00 44.98 4.17
546 1322 1.001764 CAGATCTGCTGGCCCACAA 60.002 57.895 10.38 0.00 41.07 3.33
547 1323 1.030488 CAGATCTGCTGGCCCACAAG 61.030 60.000 10.38 0.00 41.07 3.16
548 1324 1.751927 GATCTGCTGGCCCACAAGG 60.752 63.158 0.00 0.00 39.47 3.61
549 1325 2.202236 GATCTGCTGGCCCACAAGGA 62.202 60.000 0.00 0.00 38.24 3.36
550 1326 1.578215 ATCTGCTGGCCCACAAGGAT 61.578 55.000 0.00 0.00 38.24 3.24
551 1327 2.036098 TGCTGGCCCACAAGGATG 59.964 61.111 0.00 0.00 38.24 3.51
552 1328 3.455469 GCTGGCCCACAAGGATGC 61.455 66.667 0.00 0.00 38.24 3.91
553 1329 2.036098 CTGGCCCACAAGGATGCA 59.964 61.111 0.00 0.00 38.24 3.96
554 1330 2.283101 TGGCCCACAAGGATGCAC 60.283 61.111 0.00 0.00 38.24 4.57
555 1331 3.443045 GGCCCACAAGGATGCACG 61.443 66.667 0.00 0.00 38.24 5.34
556 1332 2.672996 GCCCACAAGGATGCACGT 60.673 61.111 0.00 0.00 38.24 4.49
557 1333 2.690778 GCCCACAAGGATGCACGTC 61.691 63.158 0.00 0.00 38.24 4.34
558 1334 2.390599 CCCACAAGGATGCACGTCG 61.391 63.158 0.00 0.00 38.24 5.12
559 1335 2.476051 CACAAGGATGCACGTCGC 59.524 61.111 0.00 3.44 42.89 5.19
560 1336 3.112075 ACAAGGATGCACGTCGCG 61.112 61.111 0.00 0.00 46.97 5.87
561 1337 4.505217 CAAGGATGCACGTCGCGC 62.505 66.667 0.00 0.00 46.97 6.86
562 1338 4.742201 AAGGATGCACGTCGCGCT 62.742 61.111 5.56 0.00 46.97 5.92
565 1341 3.777925 GATGCACGTCGCGCTGTT 61.778 61.111 5.56 0.00 46.97 3.16
566 1342 3.295228 GATGCACGTCGCGCTGTTT 62.295 57.895 5.56 0.00 46.97 2.83
567 1343 2.764251 GATGCACGTCGCGCTGTTTT 62.764 55.000 5.56 0.00 46.97 2.43
568 1344 1.561717 ATGCACGTCGCGCTGTTTTA 61.562 50.000 5.56 0.00 46.97 1.52
569 1345 1.787056 GCACGTCGCGCTGTTTTAC 60.787 57.895 5.56 0.00 0.00 2.01
570 1346 1.850640 CACGTCGCGCTGTTTTACT 59.149 52.632 5.56 0.00 0.00 2.24
571 1347 0.448861 CACGTCGCGCTGTTTTACTG 60.449 55.000 5.56 0.00 0.00 2.74
572 1348 1.129809 CGTCGCGCTGTTTTACTGG 59.870 57.895 5.56 0.00 0.00 4.00
573 1349 1.154469 GTCGCGCTGTTTTACTGGC 60.154 57.895 5.56 0.00 0.00 4.85
574 1350 2.175811 CGCGCTGTTTTACTGGCC 59.824 61.111 5.56 0.00 0.00 5.36
575 1351 2.566529 GCGCTGTTTTACTGGCCC 59.433 61.111 0.00 0.00 0.00 5.80
576 1352 1.971695 GCGCTGTTTTACTGGCCCT 60.972 57.895 0.00 0.00 0.00 5.19
577 1353 1.875963 CGCTGTTTTACTGGCCCTG 59.124 57.895 0.00 0.00 0.00 4.45
578 1354 1.586541 GCTGTTTTACTGGCCCTGC 59.413 57.895 0.00 0.00 0.00 4.85
579 1355 1.178534 GCTGTTTTACTGGCCCTGCA 61.179 55.000 0.00 0.00 0.00 4.41
580 1356 1.549203 CTGTTTTACTGGCCCTGCAT 58.451 50.000 0.00 0.00 0.00 3.96
581 1357 2.722094 CTGTTTTACTGGCCCTGCATA 58.278 47.619 0.00 0.00 0.00 3.14
582 1358 2.684881 CTGTTTTACTGGCCCTGCATAG 59.315 50.000 0.00 0.00 0.00 2.23
583 1359 2.041081 TGTTTTACTGGCCCTGCATAGT 59.959 45.455 0.00 0.00 33.49 2.12
584 1360 3.264706 TGTTTTACTGGCCCTGCATAGTA 59.735 43.478 0.00 0.00 31.87 1.82
585 1361 4.263550 TGTTTTACTGGCCCTGCATAGTAA 60.264 41.667 0.00 3.39 37.68 2.24
586 1362 4.788925 TTTACTGGCCCTGCATAGTAAT 57.211 40.909 10.85 0.00 38.49 1.89
587 1363 4.788925 TTACTGGCCCTGCATAGTAATT 57.211 40.909 0.00 0.00 36.02 1.40
588 1364 3.214696 ACTGGCCCTGCATAGTAATTC 57.785 47.619 0.00 0.00 0.00 2.17
589 1365 2.158608 ACTGGCCCTGCATAGTAATTCC 60.159 50.000 0.00 0.00 0.00 3.01
590 1366 2.107204 CTGGCCCTGCATAGTAATTCCT 59.893 50.000 0.00 0.00 0.00 3.36
591 1367 2.158623 TGGCCCTGCATAGTAATTCCTG 60.159 50.000 0.00 0.00 0.00 3.86
592 1368 1.882623 GCCCTGCATAGTAATTCCTGC 59.117 52.381 0.00 0.00 35.21 4.85
593 1369 2.749466 GCCCTGCATAGTAATTCCTGCA 60.749 50.000 0.00 0.00 41.98 4.41
596 1372 3.213206 TGCATAGTAATTCCTGCAGGG 57.787 47.619 32.23 13.83 39.54 4.45
597 1373 2.158623 TGCATAGTAATTCCTGCAGGGG 60.159 50.000 32.23 9.58 39.54 4.79
598 1374 2.106511 GCATAGTAATTCCTGCAGGGGA 59.893 50.000 32.23 21.17 34.77 4.81
599 1375 3.744660 CATAGTAATTCCTGCAGGGGAC 58.255 50.000 32.23 22.38 34.78 4.46
616 1392 4.020617 CCCTGCAGGTGAGCCGAA 62.021 66.667 30.63 0.00 40.50 4.30
617 1393 2.743928 CCTGCAGGTGAGCCGAAC 60.744 66.667 25.53 0.00 40.50 3.95
618 1394 2.743928 CTGCAGGTGAGCCGAACC 60.744 66.667 5.57 0.00 40.50 3.62
619 1395 4.329545 TGCAGGTGAGCCGAACCC 62.330 66.667 0.00 0.00 38.57 4.11
626 1402 1.029681 GTGAGCCGAACCCACTTTTT 58.970 50.000 0.00 0.00 0.00 1.94
644 1420 7.307930 CCACTTTTTAAGAAACAAATGCATCCC 60.308 37.037 0.00 0.00 0.00 3.85
651 1427 3.866883 AACAAATGCATCCCCTAAACG 57.133 42.857 0.00 0.00 0.00 3.60
673 1449 2.101233 GCTCCCGGAAGAAACGCTC 61.101 63.158 0.73 0.00 0.00 5.03
674 1450 1.592223 CTCCCGGAAGAAACGCTCT 59.408 57.895 0.73 0.00 35.13 4.09
708 1484 3.826729 GCCTGAAACAAGGGAACTAATGT 59.173 43.478 0.00 0.00 42.68 2.71
717 1493 3.716431 AGGGAACTAATGTAGTCCCGAA 58.284 45.455 13.02 0.00 44.22 4.30
778 1554 2.528743 CGATGCCAGATCGCCACAC 61.529 63.158 0.00 0.00 34.66 3.82
817 1595 4.705507 ACTCAGCTAAACGTTCCTGATCTA 59.294 41.667 19.80 1.25 34.20 1.98
983 1797 0.611200 TACACACCCAAGACATCCCG 59.389 55.000 0.00 0.00 0.00 5.14
1152 1975 2.037901 CTCCTCTATGCCAAGAGCTCA 58.962 52.381 17.77 0.00 41.48 4.26
1848 2726 2.131709 CCTTCCCGCCGACCTCATA 61.132 63.158 0.00 0.00 0.00 2.15
2056 2950 0.396811 CCTCCTCAACCGGAACAACT 59.603 55.000 9.46 0.00 31.44 3.16
2133 3036 0.036010 CCGTGTGGGAGCAGATCTTT 60.036 55.000 0.00 0.00 38.47 2.52
2340 3250 3.244875 ACATGTACAAGTTCATGGAGCCA 60.245 43.478 19.40 0.00 43.68 4.75
2391 3301 1.139058 GCCAACTACAGGGACATCGAT 59.861 52.381 0.00 0.00 0.00 3.59
2412 3322 0.616395 TCGGCAGGAATGAGGTGGTA 60.616 55.000 0.00 0.00 0.00 3.25
2575 3496 2.289133 GGGAAGTATTGATCGAGGCTCC 60.289 54.545 9.32 0.00 0.00 4.70
2596 3517 3.011818 CTGCATGGAGATTTGTAGTGCA 58.988 45.455 8.85 0.00 38.62 4.57
2652 3597 5.617751 GCGCATATGCTAATTAGTTGGAAGG 60.618 44.000 24.56 5.08 39.32 3.46
2659 3608 2.990740 ATTAGTTGGAAGGGTTGCCA 57.009 45.000 0.00 0.00 0.00 4.92
2726 3680 5.675684 AGGTGGAAGACATTTGTTTTTGT 57.324 34.783 0.00 0.00 0.00 2.83
2728 3682 4.570369 GGTGGAAGACATTTGTTTTTGTGG 59.430 41.667 0.00 0.00 0.00 4.17
2729 3683 5.415221 GTGGAAGACATTTGTTTTTGTGGA 58.585 37.500 0.00 0.00 0.00 4.02
2733 3687 7.286546 TGGAAGACATTTGTTTTTGTGGATCTA 59.713 33.333 0.00 0.00 0.00 1.98
2743 3697 5.912149 TTTTGTGGATCTATCTAGGGCAT 57.088 39.130 0.00 0.00 0.00 4.40
2766 3911 4.166187 TCTAGATGTGCTAGCTATTGCG 57.834 45.455 17.23 0.00 45.14 4.85
2821 3975 3.981211 ACAAGAAAAATGCTTGCACGAT 58.019 36.364 0.00 0.00 45.00 3.73
2872 4026 6.828502 TTTAGATGTGCAATACTTAGAGCG 57.171 37.500 0.00 0.00 0.00 5.03
2885 4039 8.401709 CAATACTTAGAGCGCATCTAGATATGA 58.598 37.037 11.47 0.00 41.57 2.15
2886 4040 6.825944 ACTTAGAGCGCATCTAGATATGAA 57.174 37.500 11.47 0.00 41.57 2.57
2924 4078 2.791383 TTTTGACAATCAAGCGTGGG 57.209 45.000 0.00 0.00 37.70 4.61
2925 4079 0.958091 TTTGACAATCAAGCGTGGGG 59.042 50.000 0.00 0.00 37.70 4.96
2926 4080 0.893270 TTGACAATCAAGCGTGGGGG 60.893 55.000 0.00 0.00 31.83 5.40
2927 4081 1.002624 GACAATCAAGCGTGGGGGA 60.003 57.895 0.00 0.00 0.00 4.81
2928 4082 0.394352 GACAATCAAGCGTGGGGGAT 60.394 55.000 0.00 0.00 0.00 3.85
2929 4083 0.680921 ACAATCAAGCGTGGGGGATG 60.681 55.000 0.00 0.00 0.00 3.51
2930 4084 1.076777 AATCAAGCGTGGGGGATGG 60.077 57.895 0.00 0.00 0.00 3.51
2931 4085 1.570857 AATCAAGCGTGGGGGATGGA 61.571 55.000 0.00 0.00 0.00 3.41
2932 4086 1.355718 ATCAAGCGTGGGGGATGGAT 61.356 55.000 0.00 0.00 0.00 3.41
2933 4087 1.825191 CAAGCGTGGGGGATGGATG 60.825 63.158 0.00 0.00 0.00 3.51
2934 4088 3.060614 AAGCGTGGGGGATGGATGG 62.061 63.158 0.00 0.00 0.00 3.51
2935 4089 4.586235 GCGTGGGGGATGGATGGG 62.586 72.222 0.00 0.00 0.00 4.00
2936 4090 3.889692 CGTGGGGGATGGATGGGG 61.890 72.222 0.00 0.00 0.00 4.96
2937 4091 2.369568 GTGGGGGATGGATGGGGA 60.370 66.667 0.00 0.00 0.00 4.81
2938 4092 2.038438 TGGGGGATGGATGGGGAG 60.038 66.667 0.00 0.00 0.00 4.30
2939 4093 2.293934 GGGGGATGGATGGGGAGA 59.706 66.667 0.00 0.00 0.00 3.71
2940 4094 1.849823 GGGGGATGGATGGGGAGAG 60.850 68.421 0.00 0.00 0.00 3.20
2941 4095 1.849823 GGGGATGGATGGGGAGAGG 60.850 68.421 0.00 0.00 0.00 3.69
2942 4096 1.849823 GGGATGGATGGGGAGAGGG 60.850 68.421 0.00 0.00 0.00 4.30
2943 4097 1.849823 GGATGGATGGGGAGAGGGG 60.850 68.421 0.00 0.00 0.00 4.79
2944 4098 1.849823 GATGGATGGGGAGAGGGGG 60.850 68.421 0.00 0.00 0.00 5.40
2965 4119 3.164977 GGAGGCTAGCTCCCCCAC 61.165 72.222 15.72 0.00 35.03 4.61
2966 4120 3.164977 GAGGCTAGCTCCCCCACC 61.165 72.222 15.72 0.00 0.00 4.61
2967 4121 3.700350 AGGCTAGCTCCCCCACCT 61.700 66.667 15.72 0.00 0.00 4.00
2968 4122 3.483869 GGCTAGCTCCCCCACCTG 61.484 72.222 15.72 0.00 0.00 4.00
2969 4123 2.365635 GCTAGCTCCCCCACCTGA 60.366 66.667 7.70 0.00 0.00 3.86
2970 4124 1.995626 GCTAGCTCCCCCACCTGAA 60.996 63.158 7.70 0.00 0.00 3.02
2971 4125 1.348775 GCTAGCTCCCCCACCTGAAT 61.349 60.000 7.70 0.00 0.00 2.57
2972 4126 2.040144 GCTAGCTCCCCCACCTGAATA 61.040 57.143 7.70 0.00 0.00 1.75
2973 4127 2.408565 CTAGCTCCCCCACCTGAATAA 58.591 52.381 0.00 0.00 0.00 1.40
2974 4128 1.912862 AGCTCCCCCACCTGAATAAT 58.087 50.000 0.00 0.00 0.00 1.28
2975 4129 1.496429 AGCTCCCCCACCTGAATAATG 59.504 52.381 0.00 0.00 0.00 1.90
2976 4130 1.215423 GCTCCCCCACCTGAATAATGT 59.785 52.381 0.00 0.00 0.00 2.71
2977 4131 2.441750 GCTCCCCCACCTGAATAATGTA 59.558 50.000 0.00 0.00 0.00 2.29
2978 4132 3.074538 GCTCCCCCACCTGAATAATGTAT 59.925 47.826 0.00 0.00 0.00 2.29
2979 4133 4.447762 GCTCCCCCACCTGAATAATGTATT 60.448 45.833 0.00 0.00 0.00 1.89
2980 4134 5.222048 GCTCCCCCACCTGAATAATGTATTA 60.222 44.000 0.00 0.00 0.00 0.98
2981 4135 6.195600 TCCCCCACCTGAATAATGTATTAC 57.804 41.667 0.00 0.00 0.00 1.89
2982 4136 5.914716 TCCCCCACCTGAATAATGTATTACT 59.085 40.000 0.00 0.00 0.00 2.24
2983 4137 6.043938 TCCCCCACCTGAATAATGTATTACTC 59.956 42.308 0.00 0.00 0.00 2.59
2984 4138 6.183361 CCCCCACCTGAATAATGTATTACTCA 60.183 42.308 0.00 0.00 29.25 3.41
2985 4139 7.287061 CCCCACCTGAATAATGTATTACTCAA 58.713 38.462 0.00 0.00 29.47 3.02
2986 4140 7.777910 CCCCACCTGAATAATGTATTACTCAAA 59.222 37.037 0.00 0.00 29.47 2.69
2987 4141 8.840321 CCCACCTGAATAATGTATTACTCAAAG 58.160 37.037 0.00 0.00 29.47 2.77
2988 4142 8.840321 CCACCTGAATAATGTATTACTCAAAGG 58.160 37.037 0.00 0.46 29.47 3.11
2989 4143 8.345565 CACCTGAATAATGTATTACTCAAAGGC 58.654 37.037 0.00 0.00 29.47 4.35
2990 4144 8.275040 ACCTGAATAATGTATTACTCAAAGGCT 58.725 33.333 0.00 0.00 29.47 4.58
2991 4145 8.562892 CCTGAATAATGTATTACTCAAAGGCTG 58.437 37.037 0.00 0.00 29.47 4.85
2992 4146 9.113838 CTGAATAATGTATTACTCAAAGGCTGT 57.886 33.333 0.00 0.00 29.47 4.40
2993 4147 9.109393 TGAATAATGTATTACTCAAAGGCTGTC 57.891 33.333 0.00 0.00 27.04 3.51
2994 4148 7.715265 ATAATGTATTACTCAAAGGCTGTCG 57.285 36.000 0.00 0.00 0.00 4.35
2995 4149 4.794278 TGTATTACTCAAAGGCTGTCGA 57.206 40.909 0.00 0.00 0.00 4.20
2996 4150 4.744570 TGTATTACTCAAAGGCTGTCGAG 58.255 43.478 6.55 6.55 0.00 4.04
2997 4151 2.743636 TTACTCAAAGGCTGTCGAGG 57.256 50.000 11.42 0.00 0.00 4.63
2998 4152 1.629043 TACTCAAAGGCTGTCGAGGT 58.371 50.000 11.42 0.00 0.00 3.85
2999 4153 0.034059 ACTCAAAGGCTGTCGAGGTG 59.966 55.000 11.42 0.00 0.00 4.00
3043 4522 0.107654 TGAGAGATCGTGCGGAGAGA 60.108 55.000 0.00 0.00 0.00 3.10
3050 4529 1.982660 TCGTGCGGAGAGATAGGAAT 58.017 50.000 0.00 0.00 0.00 3.01
3055 4534 1.277557 GCGGAGAGATAGGAATGCCAT 59.722 52.381 0.00 0.00 36.29 4.40
3063 4542 5.369110 AGAGATAGGAATGCCATGAGAAAGT 59.631 40.000 0.00 0.00 36.29 2.66
3094 4573 3.317993 TGTCACTCACAAACAGAGATCGA 59.682 43.478 0.00 0.00 36.91 3.59
3132 4611 7.500892 GTCTAGGTCTGAGATGATGAGTCTAAA 59.499 40.741 0.00 0.00 0.00 1.85
3186 4665 4.906065 AACAACATATCATTGCGAGCAT 57.094 36.364 0.00 0.00 0.00 3.79
3198 4677 0.392336 GCGAGCATCCCAGATCTTCT 59.608 55.000 0.00 0.00 0.00 2.85
3200 4679 2.352617 GCGAGCATCCCAGATCTTCTAG 60.353 54.545 0.00 0.00 0.00 2.43
3228 4707 3.225798 GCAGCACCAAAGGCCACA 61.226 61.111 5.01 0.00 0.00 4.17
3301 4782 3.684305 TCACTTGTCAATGGAGTAATGCG 59.316 43.478 0.00 0.00 0.00 4.73
3326 4807 1.227205 CTGCCAGACTCGAGCATCC 60.227 63.158 13.61 0.00 35.64 3.51
3327 4808 2.107953 GCCAGACTCGAGCATCCC 59.892 66.667 13.61 0.00 0.00 3.85
3395 4877 2.553602 TGTTGGTGATGATGTGCTTGTC 59.446 45.455 0.00 0.00 0.00 3.18
3441 4923 5.086621 AGCCCATTTTTGAAGAGTAACCAT 58.913 37.500 0.00 0.00 0.00 3.55
3487 4970 0.749454 ATGAGCCCGCCAAATGAGAC 60.749 55.000 0.00 0.00 0.00 3.36
3500 4983 4.302455 CAAATGAGACGAGCGATTAGGAT 58.698 43.478 0.00 0.00 0.00 3.24
3536 5019 3.322369 TCATGAGCACGTCGTAATGTTT 58.678 40.909 0.00 0.00 0.00 2.83
3556 5039 5.163141 TGTTTCTTGGTGGAGAAGTTATGGA 60.163 40.000 0.00 0.00 37.01 3.41
3560 5043 1.913419 GGTGGAGAAGTTATGGACCCA 59.087 52.381 0.00 0.00 0.00 4.51
3561 5044 2.355818 GGTGGAGAAGTTATGGACCCAC 60.356 54.545 0.00 0.00 41.18 4.61
3563 5046 2.983192 TGGAGAAGTTATGGACCCACAA 59.017 45.455 0.00 0.00 0.00 3.33
3564 5047 3.009033 TGGAGAAGTTATGGACCCACAAG 59.991 47.826 0.00 0.00 0.00 3.16
3565 5048 3.610911 GAGAAGTTATGGACCCACAAGG 58.389 50.000 0.00 0.00 43.78 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
360 1136 0.869730 TTTTTCCGCCACTACGAAGC 59.130 50.000 0.00 0.00 34.06 3.86
378 1154 1.143073 ACCTCCGCAGTTCCTCTTTTT 59.857 47.619 0.00 0.00 0.00 1.94
379 1155 0.765510 ACCTCCGCAGTTCCTCTTTT 59.234 50.000 0.00 0.00 0.00 2.27
380 1156 0.321996 GACCTCCGCAGTTCCTCTTT 59.678 55.000 0.00 0.00 0.00 2.52
381 1157 0.832135 TGACCTCCGCAGTTCCTCTT 60.832 55.000 0.00 0.00 0.00 2.85
382 1158 0.832135 TTGACCTCCGCAGTTCCTCT 60.832 55.000 0.00 0.00 0.00 3.69
383 1159 0.250513 ATTGACCTCCGCAGTTCCTC 59.749 55.000 0.00 0.00 0.00 3.71
384 1160 0.250513 GATTGACCTCCGCAGTTCCT 59.749 55.000 0.00 0.00 0.00 3.36
385 1161 0.036388 TGATTGACCTCCGCAGTTCC 60.036 55.000 0.00 0.00 0.00 3.62
386 1162 1.464997 GTTGATTGACCTCCGCAGTTC 59.535 52.381 0.00 0.00 0.00 3.01
387 1163 1.072331 AGTTGATTGACCTCCGCAGTT 59.928 47.619 0.00 0.00 0.00 3.16
388 1164 0.687354 AGTTGATTGACCTCCGCAGT 59.313 50.000 0.00 0.00 0.00 4.40
389 1165 1.081892 CAGTTGATTGACCTCCGCAG 58.918 55.000 0.00 0.00 0.00 5.18
390 1166 0.955428 GCAGTTGATTGACCTCCGCA 60.955 55.000 0.00 0.00 0.00 5.69
391 1167 0.955428 TGCAGTTGATTGACCTCCGC 60.955 55.000 0.00 0.00 0.00 5.54
392 1168 0.798776 GTGCAGTTGATTGACCTCCG 59.201 55.000 0.00 0.00 0.00 4.63
393 1169 1.808945 CTGTGCAGTTGATTGACCTCC 59.191 52.381 0.00 0.00 0.00 4.30
394 1170 1.198637 GCTGTGCAGTTGATTGACCTC 59.801 52.381 0.00 0.00 0.00 3.85
395 1171 1.242076 GCTGTGCAGTTGATTGACCT 58.758 50.000 0.00 0.00 0.00 3.85
396 1172 0.110056 CGCTGTGCAGTTGATTGACC 60.110 55.000 0.00 0.00 0.00 4.02
397 1173 0.110056 CCGCTGTGCAGTTGATTGAC 60.110 55.000 0.00 0.00 0.00 3.18
398 1174 1.855213 GCCGCTGTGCAGTTGATTGA 61.855 55.000 0.00 0.00 0.00 2.57
399 1175 1.443194 GCCGCTGTGCAGTTGATTG 60.443 57.895 0.00 0.00 0.00 2.67
400 1176 1.898094 TGCCGCTGTGCAGTTGATT 60.898 52.632 0.00 0.00 36.04 2.57
401 1177 2.281692 TGCCGCTGTGCAGTTGAT 60.282 55.556 0.00 0.00 36.04 2.57
402 1178 3.279116 GTGCCGCTGTGCAGTTGA 61.279 61.111 0.00 0.00 43.02 3.18
403 1179 2.791396 GATGTGCCGCTGTGCAGTTG 62.791 60.000 0.00 0.00 43.02 3.16
404 1180 2.595463 ATGTGCCGCTGTGCAGTT 60.595 55.556 0.00 0.00 43.02 3.16
405 1181 3.052082 GATGTGCCGCTGTGCAGT 61.052 61.111 0.00 0.00 43.02 4.40
406 1182 2.319011 GATGATGTGCCGCTGTGCAG 62.319 60.000 0.00 0.00 43.02 4.41
407 1183 2.360225 ATGATGTGCCGCTGTGCA 60.360 55.556 0.00 0.00 39.37 4.57
408 1184 1.651240 AAGATGATGTGCCGCTGTGC 61.651 55.000 0.00 0.00 0.00 4.57
409 1185 1.328680 GTAAGATGATGTGCCGCTGTG 59.671 52.381 0.00 0.00 0.00 3.66
410 1186 1.208052 AGTAAGATGATGTGCCGCTGT 59.792 47.619 0.00 0.00 0.00 4.40
411 1187 1.863454 GAGTAAGATGATGTGCCGCTG 59.137 52.381 0.00 0.00 0.00 5.18
412 1188 1.482182 TGAGTAAGATGATGTGCCGCT 59.518 47.619 0.00 0.00 0.00 5.52
413 1189 1.863454 CTGAGTAAGATGATGTGCCGC 59.137 52.381 0.00 0.00 0.00 6.53
414 1190 1.863454 GCTGAGTAAGATGATGTGCCG 59.137 52.381 0.00 0.00 0.00 5.69
415 1191 2.871022 CAGCTGAGTAAGATGATGTGCC 59.129 50.000 8.42 0.00 45.58 5.01
416 1192 2.287373 GCAGCTGAGTAAGATGATGTGC 59.713 50.000 20.43 0.00 45.58 4.57
417 1193 3.794717 AGCAGCTGAGTAAGATGATGTG 58.205 45.455 20.43 0.00 45.58 3.21
418 1194 4.484537 AAGCAGCTGAGTAAGATGATGT 57.515 40.909 20.43 0.00 40.79 3.06
419 1195 5.502058 CGAAAAGCAGCTGAGTAAGATGATG 60.502 44.000 20.43 0.00 40.79 3.07
420 1196 4.569966 CGAAAAGCAGCTGAGTAAGATGAT 59.430 41.667 20.43 0.00 44.30 2.45
421 1197 3.928992 CGAAAAGCAGCTGAGTAAGATGA 59.071 43.478 20.43 0.00 45.58 2.92
422 1198 3.928992 TCGAAAAGCAGCTGAGTAAGATG 59.071 43.478 20.43 0.00 45.49 2.90
423 1199 4.193826 TCGAAAAGCAGCTGAGTAAGAT 57.806 40.909 20.43 0.00 0.00 2.40
424 1200 3.660501 TCGAAAAGCAGCTGAGTAAGA 57.339 42.857 20.43 6.01 0.00 2.10
425 1201 4.153117 ACAATCGAAAAGCAGCTGAGTAAG 59.847 41.667 20.43 3.47 0.00 2.34
426 1202 4.065088 ACAATCGAAAAGCAGCTGAGTAA 58.935 39.130 20.43 0.00 0.00 2.24
427 1203 3.433274 CACAATCGAAAAGCAGCTGAGTA 59.567 43.478 20.43 0.00 0.00 2.59
428 1204 2.225019 CACAATCGAAAAGCAGCTGAGT 59.775 45.455 20.43 0.00 0.00 3.41
429 1205 2.481568 TCACAATCGAAAAGCAGCTGAG 59.518 45.455 20.43 0.57 0.00 3.35
430 1206 2.493035 TCACAATCGAAAAGCAGCTGA 58.507 42.857 20.43 0.00 0.00 4.26
431 1207 2.975410 TCACAATCGAAAAGCAGCTG 57.025 45.000 10.11 10.11 0.00 4.24
432 1208 3.076621 TCATCACAATCGAAAAGCAGCT 58.923 40.909 0.00 0.00 0.00 4.24
433 1209 3.476295 TCATCACAATCGAAAAGCAGC 57.524 42.857 0.00 0.00 0.00 5.25
434 1210 5.039480 AGTTCATCACAATCGAAAAGCAG 57.961 39.130 0.00 0.00 0.00 4.24
435 1211 5.700832 ACTAGTTCATCACAATCGAAAAGCA 59.299 36.000 0.00 0.00 0.00 3.91
436 1212 6.017933 CACTAGTTCATCACAATCGAAAAGC 58.982 40.000 0.00 0.00 0.00 3.51
437 1213 6.537566 CCACTAGTTCATCACAATCGAAAAG 58.462 40.000 0.00 0.00 0.00 2.27
438 1214 5.106712 GCCACTAGTTCATCACAATCGAAAA 60.107 40.000 0.00 0.00 0.00 2.29
439 1215 4.391830 GCCACTAGTTCATCACAATCGAAA 59.608 41.667 0.00 0.00 0.00 3.46
440 1216 3.932710 GCCACTAGTTCATCACAATCGAA 59.067 43.478 0.00 0.00 0.00 3.71
441 1217 3.056179 TGCCACTAGTTCATCACAATCGA 60.056 43.478 0.00 0.00 0.00 3.59
442 1218 3.261580 TGCCACTAGTTCATCACAATCG 58.738 45.455 0.00 0.00 0.00 3.34
443 1219 4.507710 TCTGCCACTAGTTCATCACAATC 58.492 43.478 0.00 0.00 0.00 2.67
444 1220 4.558226 TCTGCCACTAGTTCATCACAAT 57.442 40.909 0.00 0.00 0.00 2.71
445 1221 4.020307 TCATCTGCCACTAGTTCATCACAA 60.020 41.667 0.00 0.00 0.00 3.33
446 1222 3.515104 TCATCTGCCACTAGTTCATCACA 59.485 43.478 0.00 0.00 0.00 3.58
447 1223 3.868077 GTCATCTGCCACTAGTTCATCAC 59.132 47.826 0.00 0.00 0.00 3.06
448 1224 3.118629 GGTCATCTGCCACTAGTTCATCA 60.119 47.826 0.00 0.00 0.00 3.07
449 1225 3.118629 TGGTCATCTGCCACTAGTTCATC 60.119 47.826 0.00 0.00 0.00 2.92
450 1226 2.840038 TGGTCATCTGCCACTAGTTCAT 59.160 45.455 0.00 0.00 0.00 2.57
451 1227 2.256306 TGGTCATCTGCCACTAGTTCA 58.744 47.619 0.00 0.00 0.00 3.18
452 1228 3.265791 CTTGGTCATCTGCCACTAGTTC 58.734 50.000 0.00 0.00 35.46 3.01
453 1229 2.616510 GCTTGGTCATCTGCCACTAGTT 60.617 50.000 0.00 0.00 35.46 2.24
454 1230 1.065854 GCTTGGTCATCTGCCACTAGT 60.066 52.381 0.00 0.00 35.46 2.57
455 1231 1.209019 AGCTTGGTCATCTGCCACTAG 59.791 52.381 0.00 0.00 35.46 2.57
456 1232 1.065926 CAGCTTGGTCATCTGCCACTA 60.066 52.381 0.00 0.00 35.46 2.74
457 1233 0.322277 CAGCTTGGTCATCTGCCACT 60.322 55.000 0.00 0.00 35.46 4.00
458 1234 1.930908 GCAGCTTGGTCATCTGCCAC 61.931 60.000 11.88 0.00 45.34 5.01
459 1235 1.676635 GCAGCTTGGTCATCTGCCA 60.677 57.895 11.88 0.00 45.34 4.92
460 1236 3.194719 GCAGCTTGGTCATCTGCC 58.805 61.111 11.88 0.00 45.34 4.85
461 1237 2.789917 CGCAGCTTGGTCATCTGC 59.210 61.111 12.53 12.53 46.98 4.26
491 1267 1.288350 TCTAGCGTAGACGAGTGCTC 58.712 55.000 6.19 0.00 43.02 4.26
492 1268 1.735386 TTCTAGCGTAGACGAGTGCT 58.265 50.000 6.19 0.00 43.02 4.40
493 1269 2.539346 TTTCTAGCGTAGACGAGTGC 57.461 50.000 6.19 0.00 43.02 4.40
494 1270 5.152923 TGTATTTCTAGCGTAGACGAGTG 57.847 43.478 6.19 0.00 43.02 3.51
495 1271 5.808042 TTGTATTTCTAGCGTAGACGAGT 57.192 39.130 6.19 0.00 43.02 4.18
496 1272 7.681125 AAATTGTATTTCTAGCGTAGACGAG 57.319 36.000 6.19 0.00 43.02 4.18
497 1273 9.740239 ATTAAATTGTATTTCTAGCGTAGACGA 57.260 29.630 6.19 0.00 43.02 4.20
514 1290 8.139989 GCCAGCAGATCTGATTAATTAAATTGT 58.860 33.333 27.04 0.00 45.72 2.71
515 1291 7.597743 GGCCAGCAGATCTGATTAATTAAATTG 59.402 37.037 27.04 3.83 45.72 2.32
516 1292 7.256083 GGGCCAGCAGATCTGATTAATTAAATT 60.256 37.037 27.04 0.00 45.72 1.82
517 1293 6.210185 GGGCCAGCAGATCTGATTAATTAAAT 59.790 38.462 27.04 0.00 45.72 1.40
518 1294 5.536161 GGGCCAGCAGATCTGATTAATTAAA 59.464 40.000 27.04 0.00 45.72 1.52
519 1295 5.072741 GGGCCAGCAGATCTGATTAATTAA 58.927 41.667 27.04 0.00 45.72 1.40
520 1296 4.104579 TGGGCCAGCAGATCTGATTAATTA 59.895 41.667 27.04 3.48 45.72 1.40
521 1297 3.117398 TGGGCCAGCAGATCTGATTAATT 60.117 43.478 27.04 1.01 45.72 1.40
522 1298 2.444388 TGGGCCAGCAGATCTGATTAAT 59.556 45.455 27.04 3.09 45.72 1.40
523 1299 1.845791 TGGGCCAGCAGATCTGATTAA 59.154 47.619 27.04 0.39 45.72 1.40
524 1300 1.141657 GTGGGCCAGCAGATCTGATTA 59.858 52.381 27.04 0.92 45.72 1.75
525 1301 0.106819 GTGGGCCAGCAGATCTGATT 60.107 55.000 27.04 10.54 45.72 2.57
526 1302 1.276859 TGTGGGCCAGCAGATCTGAT 61.277 55.000 27.04 18.40 45.72 2.90
527 1303 1.491274 TTGTGGGCCAGCAGATCTGA 61.491 55.000 27.04 0.00 45.72 3.27
528 1304 1.001764 TTGTGGGCCAGCAGATCTG 60.002 57.895 18.84 18.84 42.49 2.90
529 1305 1.302285 CTTGTGGGCCAGCAGATCT 59.698 57.895 6.40 0.00 0.00 2.75
530 1306 1.751927 CCTTGTGGGCCAGCAGATC 60.752 63.158 6.40 0.00 0.00 2.75
531 1307 1.578215 ATCCTTGTGGGCCAGCAGAT 61.578 55.000 6.40 4.29 34.39 2.90
532 1308 2.233566 ATCCTTGTGGGCCAGCAGA 61.234 57.895 6.40 1.54 34.39 4.26
533 1309 2.050350 CATCCTTGTGGGCCAGCAG 61.050 63.158 6.40 5.56 34.39 4.24
534 1310 2.036098 CATCCTTGTGGGCCAGCA 59.964 61.111 6.40 5.46 34.39 4.41
535 1311 3.455469 GCATCCTTGTGGGCCAGC 61.455 66.667 6.40 0.00 34.39 4.85
536 1312 2.036098 TGCATCCTTGTGGGCCAG 59.964 61.111 6.40 0.00 34.39 4.85
537 1313 2.283101 GTGCATCCTTGTGGGCCA 60.283 61.111 0.00 0.00 34.39 5.36
538 1314 3.443045 CGTGCATCCTTGTGGGCC 61.443 66.667 0.00 0.00 34.39 5.80
539 1315 2.672996 ACGTGCATCCTTGTGGGC 60.673 61.111 0.00 0.00 34.39 5.36
540 1316 2.390599 CGACGTGCATCCTTGTGGG 61.391 63.158 0.00 0.00 0.00 4.61
541 1317 3.027170 GCGACGTGCATCCTTGTGG 62.027 63.158 0.00 0.00 45.45 4.17
542 1318 2.476051 GCGACGTGCATCCTTGTG 59.524 61.111 0.00 0.00 45.45 3.33
543 1319 3.112075 CGCGACGTGCATCCTTGT 61.112 61.111 0.00 0.00 46.97 3.16
544 1320 4.505217 GCGCGACGTGCATCCTTG 62.505 66.667 27.26 0.00 46.97 3.61
545 1321 4.742201 AGCGCGACGTGCATCCTT 62.742 61.111 32.41 11.11 46.97 3.36
548 1324 2.764251 AAAACAGCGCGACGTGCATC 62.764 55.000 32.41 6.28 46.97 3.91
549 1325 1.561717 TAAAACAGCGCGACGTGCAT 61.562 50.000 32.41 18.84 46.97 3.96
550 1326 2.238437 TAAAACAGCGCGACGTGCA 61.238 52.632 32.41 10.36 46.97 4.57
551 1327 1.787056 GTAAAACAGCGCGACGTGC 60.787 57.895 25.18 25.18 39.59 5.34
552 1328 0.448861 CAGTAAAACAGCGCGACGTG 60.449 55.000 12.10 6.09 0.00 4.49
553 1329 1.554042 CCAGTAAAACAGCGCGACGT 61.554 55.000 12.10 1.60 0.00 4.34
554 1330 1.129809 CCAGTAAAACAGCGCGACG 59.870 57.895 12.10 0.76 0.00 5.12
555 1331 1.154469 GCCAGTAAAACAGCGCGAC 60.154 57.895 12.10 0.04 0.00 5.19
556 1332 2.322081 GGCCAGTAAAACAGCGCGA 61.322 57.895 12.10 0.00 0.00 5.87
557 1333 2.175811 GGCCAGTAAAACAGCGCG 59.824 61.111 0.00 0.00 0.00 6.86
558 1334 1.971695 AGGGCCAGTAAAACAGCGC 60.972 57.895 6.18 0.00 38.36 5.92
559 1335 1.875963 CAGGGCCAGTAAAACAGCG 59.124 57.895 6.18 0.00 0.00 5.18
560 1336 1.178534 TGCAGGGCCAGTAAAACAGC 61.179 55.000 6.18 0.00 0.00 4.40
561 1337 1.549203 ATGCAGGGCCAGTAAAACAG 58.451 50.000 6.18 0.00 0.00 3.16
562 1338 2.041081 ACTATGCAGGGCCAGTAAAACA 59.959 45.455 6.18 0.00 0.00 2.83
563 1339 2.723273 ACTATGCAGGGCCAGTAAAAC 58.277 47.619 6.18 0.00 0.00 2.43
564 1340 4.577988 TTACTATGCAGGGCCAGTAAAA 57.422 40.909 6.18 0.00 34.49 1.52
565 1341 4.788925 ATTACTATGCAGGGCCAGTAAA 57.211 40.909 14.99 0.00 38.02 2.01
566 1342 4.445735 GGAATTACTATGCAGGGCCAGTAA 60.446 45.833 13.79 13.79 38.47 2.24
567 1343 3.072476 GGAATTACTATGCAGGGCCAGTA 59.928 47.826 6.18 0.69 0.00 2.74
568 1344 2.158608 GGAATTACTATGCAGGGCCAGT 60.159 50.000 6.18 1.86 0.00 4.00
569 1345 2.107204 AGGAATTACTATGCAGGGCCAG 59.893 50.000 6.18 0.00 0.00 4.85
570 1346 2.135189 AGGAATTACTATGCAGGGCCA 58.865 47.619 6.18 0.00 0.00 5.36
571 1347 2.508526 CAGGAATTACTATGCAGGGCC 58.491 52.381 0.00 0.00 0.00 5.80
572 1348 1.882623 GCAGGAATTACTATGCAGGGC 59.117 52.381 0.00 0.00 38.54 5.19
573 1349 3.213206 TGCAGGAATTACTATGCAGGG 57.787 47.619 0.55 0.00 43.34 4.45
576 1352 2.158623 CCCCTGCAGGAATTACTATGCA 60.159 50.000 34.91 4.65 45.82 3.96
577 1353 2.106511 TCCCCTGCAGGAATTACTATGC 59.893 50.000 34.91 0.00 38.24 3.14
578 1354 3.496870 GGTCCCCTGCAGGAATTACTATG 60.497 52.174 34.91 13.46 37.78 2.23
579 1355 2.711547 GGTCCCCTGCAGGAATTACTAT 59.288 50.000 34.91 0.00 37.78 2.12
580 1356 2.124411 GGTCCCCTGCAGGAATTACTA 58.876 52.381 34.91 7.85 37.78 1.82
581 1357 0.919710 GGTCCCCTGCAGGAATTACT 59.080 55.000 34.91 0.00 37.78 2.24
582 1358 0.106669 GGGTCCCCTGCAGGAATTAC 60.107 60.000 34.91 22.86 37.78 1.89
583 1359 0.253630 AGGGTCCCCTGCAGGAATTA 60.254 55.000 34.91 13.03 46.22 1.40
584 1360 1.544917 AGGGTCCCCTGCAGGAATT 60.545 57.895 34.91 10.13 46.22 2.17
585 1361 2.128226 AGGGTCCCCTGCAGGAAT 59.872 61.111 34.91 9.76 46.22 3.01
599 1375 4.020617 TTCGGCTCACCTGCAGGG 62.021 66.667 35.42 23.77 40.27 4.45
600 1376 2.743928 GTTCGGCTCACCTGCAGG 60.744 66.667 31.60 31.60 42.17 4.85
601 1377 2.743928 GGTTCGGCTCACCTGCAG 60.744 66.667 6.78 6.78 34.04 4.41
602 1378 4.329545 GGGTTCGGCTCACCTGCA 62.330 66.667 2.37 0.00 34.36 4.41
603 1379 4.329545 TGGGTTCGGCTCACCTGC 62.330 66.667 2.37 0.00 34.36 4.85
604 1380 2.358737 GTGGGTTCGGCTCACCTG 60.359 66.667 2.37 0.00 42.69 4.00
608 1384 2.642154 TAAAAAGTGGGTTCGGCTCA 57.358 45.000 0.00 0.00 0.00 4.26
609 1385 3.143728 TCTTAAAAAGTGGGTTCGGCTC 58.856 45.455 0.00 0.00 0.00 4.70
610 1386 3.217681 TCTTAAAAAGTGGGTTCGGCT 57.782 42.857 0.00 0.00 0.00 5.52
611 1387 3.994204 TTCTTAAAAAGTGGGTTCGGC 57.006 42.857 0.00 0.00 0.00 5.54
612 1388 5.251601 TGTTTCTTAAAAAGTGGGTTCGG 57.748 39.130 0.00 0.00 0.00 4.30
613 1389 7.617557 CATTTGTTTCTTAAAAAGTGGGTTCG 58.382 34.615 0.00 0.00 0.00 3.95
614 1390 7.065204 TGCATTTGTTTCTTAAAAAGTGGGTTC 59.935 33.333 0.00 0.00 0.00 3.62
615 1391 6.881602 TGCATTTGTTTCTTAAAAAGTGGGTT 59.118 30.769 0.00 0.00 0.00 4.11
616 1392 6.410540 TGCATTTGTTTCTTAAAAAGTGGGT 58.589 32.000 0.00 0.00 0.00 4.51
617 1393 6.917217 TGCATTTGTTTCTTAAAAAGTGGG 57.083 33.333 0.00 0.00 0.00 4.61
618 1394 7.307930 GGGATGCATTTGTTTCTTAAAAAGTGG 60.308 37.037 0.00 0.00 0.00 4.00
619 1395 7.307930 GGGGATGCATTTGTTTCTTAAAAAGTG 60.308 37.037 0.00 0.00 0.00 3.16
626 1402 6.349777 CGTTTAGGGGATGCATTTGTTTCTTA 60.350 38.462 0.00 0.00 0.00 2.10
644 1420 2.499685 CGGGAGCCTCCGTTTAGG 59.500 66.667 4.29 0.00 44.60 2.69
651 1427 1.078356 GTTTCTTCCGGGAGCCTCC 60.078 63.158 4.24 0.73 35.23 4.30
673 1449 2.116736 TTCAGGCGCGAAACTGCAAG 62.117 55.000 12.10 0.00 42.29 4.01
674 1450 1.719725 TTTCAGGCGCGAAACTGCAA 61.720 50.000 12.10 8.61 34.76 4.08
708 1484 2.322658 AGAACACAACCTTCGGGACTA 58.677 47.619 0.00 0.00 38.77 2.59
717 1493 2.758423 GTTTGGTCCAAGAACACAACCT 59.242 45.455 4.09 0.00 0.00 3.50
828 1622 5.598417 AGCTCACCTAAACTTGGAATGTTTT 59.402 36.000 0.00 0.00 40.77 2.43
983 1797 1.413382 CATTGTAGCCGATCGAGCTC 58.587 55.000 27.01 19.99 41.83 4.09
1848 2726 1.676916 CCCATAGCGATGATGCGGATT 60.677 52.381 8.55 0.00 40.67 3.01
2056 2950 1.302192 CGGCGAAGGGTTTGAAGGA 60.302 57.895 0.00 0.00 0.00 3.36
2133 3036 1.080093 CTTCACGAGCCAGCCGTAA 60.080 57.895 5.97 0.00 38.29 3.18
2340 3250 2.764572 CCTGGGGTTCTTACTCACGTAT 59.235 50.000 0.00 0.00 0.00 3.06
2349 3259 1.214305 ATGCCTGCCTGGGGTTCTTA 61.214 55.000 0.00 0.00 36.00 2.10
2391 3301 1.617018 CCACCTCATTCCTGCCGAGA 61.617 60.000 0.00 0.00 0.00 4.04
2412 3322 3.244078 TGCTGTAGGTTGAGATGTCGTTT 60.244 43.478 0.00 0.00 0.00 3.60
2512 3422 3.840666 TGCTCATTCCTGAAGTAGTCCTT 59.159 43.478 0.00 0.00 35.59 3.36
2562 3472 0.179065 CATGCAGGAGCCTCGATCAA 60.179 55.000 0.00 0.00 41.13 2.57
2575 3496 3.011818 TGCACTACAAATCTCCATGCAG 58.988 45.455 0.00 0.00 36.72 4.41
2596 3517 4.839121 TCTACTATTGAAACGCCAACCAT 58.161 39.130 0.00 0.00 0.00 3.55
2659 3608 1.446016 AGAACCAGCACCTAAGGGTT 58.554 50.000 0.00 0.00 44.73 4.11
2671 3620 5.163663 TGCTAATTTTCGCCATTAGAACCAG 60.164 40.000 10.54 0.00 36.64 4.00
2726 3680 7.713704 TCTAGATATGCCCTAGATAGATCCA 57.286 40.000 0.00 0.00 38.08 3.41
2728 3682 9.013229 CACATCTAGATATGCCCTAGATAGATC 57.987 40.741 4.54 0.00 46.55 2.75
2729 3683 7.451255 GCACATCTAGATATGCCCTAGATAGAT 59.549 40.741 22.87 3.03 46.55 1.98
2743 3697 5.677344 GCGCAATAGCTAGCACATCTAGATA 60.677 44.000 18.83 0.00 46.60 1.98
2798 3952 2.472488 CGTGCAAGCATTTTTCTTGTCC 59.528 45.455 0.00 0.00 42.06 4.02
2804 3958 5.220098 GCTAAGAATCGTGCAAGCATTTTTC 60.220 40.000 0.00 2.32 0.00 2.29
2846 4000 7.359598 CGCTCTAAGTATTGCACATCTAAATCC 60.360 40.741 0.00 0.00 0.00 3.01
2849 4003 5.234329 GCGCTCTAAGTATTGCACATCTAAA 59.766 40.000 0.00 0.00 0.00 1.85
2916 4070 2.597340 CATCCATCCCCCACGCTT 59.403 61.111 0.00 0.00 0.00 4.68
2917 4071 3.492353 CCATCCATCCCCCACGCT 61.492 66.667 0.00 0.00 0.00 5.07
2918 4072 4.586235 CCCATCCATCCCCCACGC 62.586 72.222 0.00 0.00 0.00 5.34
2919 4073 3.889692 CCCCATCCATCCCCCACG 61.890 72.222 0.00 0.00 0.00 4.94
2920 4074 2.369568 TCCCCATCCATCCCCCAC 60.370 66.667 0.00 0.00 0.00 4.61
2921 4075 2.038438 CTCCCCATCCATCCCCCA 60.038 66.667 0.00 0.00 0.00 4.96
2922 4076 1.849823 CTCTCCCCATCCATCCCCC 60.850 68.421 0.00 0.00 0.00 5.40
2923 4077 1.849823 CCTCTCCCCATCCATCCCC 60.850 68.421 0.00 0.00 0.00 4.81
2924 4078 1.849823 CCCTCTCCCCATCCATCCC 60.850 68.421 0.00 0.00 0.00 3.85
2925 4079 1.849823 CCCCTCTCCCCATCCATCC 60.850 68.421 0.00 0.00 0.00 3.51
2926 4080 1.849823 CCCCCTCTCCCCATCCATC 60.850 68.421 0.00 0.00 0.00 3.51
2927 4081 2.295365 CCCCCTCTCCCCATCCAT 59.705 66.667 0.00 0.00 0.00 3.41
2949 4103 3.164977 GGTGGGGGAGCTAGCCTC 61.165 72.222 12.13 8.32 39.98 4.70
2950 4104 3.700350 AGGTGGGGGAGCTAGCCT 61.700 66.667 12.13 0.00 0.00 4.58
2951 4105 3.483869 CAGGTGGGGGAGCTAGCC 61.484 72.222 12.13 2.59 0.00 3.93
2952 4106 1.348775 ATTCAGGTGGGGGAGCTAGC 61.349 60.000 6.62 6.62 0.00 3.42
2953 4107 2.103153 TATTCAGGTGGGGGAGCTAG 57.897 55.000 0.00 0.00 0.00 3.42
2954 4108 2.579624 TTATTCAGGTGGGGGAGCTA 57.420 50.000 0.00 0.00 0.00 3.32
2955 4109 1.496429 CATTATTCAGGTGGGGGAGCT 59.504 52.381 0.00 0.00 0.00 4.09
2956 4110 1.215423 ACATTATTCAGGTGGGGGAGC 59.785 52.381 0.00 0.00 0.00 4.70
2957 4111 5.324832 AATACATTATTCAGGTGGGGGAG 57.675 43.478 0.00 0.00 0.00 4.30
2958 4112 5.914716 AGTAATACATTATTCAGGTGGGGGA 59.085 40.000 0.00 0.00 0.00 4.81
2959 4113 6.183361 TGAGTAATACATTATTCAGGTGGGGG 60.183 42.308 3.76 0.00 35.11 5.40
2960 4114 6.837312 TGAGTAATACATTATTCAGGTGGGG 58.163 40.000 3.76 0.00 35.11 4.96
2961 4115 8.746052 TTTGAGTAATACATTATTCAGGTGGG 57.254 34.615 7.10 0.00 39.23 4.61
2962 4116 8.840321 CCTTTGAGTAATACATTATTCAGGTGG 58.160 37.037 7.10 7.29 39.23 4.61
2963 4117 8.345565 GCCTTTGAGTAATACATTATTCAGGTG 58.654 37.037 7.10 2.95 39.23 4.00
2964 4118 8.275040 AGCCTTTGAGTAATACATTATTCAGGT 58.725 33.333 7.10 1.39 39.23 4.00
2965 4119 8.562892 CAGCCTTTGAGTAATACATTATTCAGG 58.437 37.037 7.10 7.43 39.23 3.86
2966 4120 9.113838 ACAGCCTTTGAGTAATACATTATTCAG 57.886 33.333 7.10 0.15 39.23 3.02
2967 4121 9.109393 GACAGCCTTTGAGTAATACATTATTCA 57.891 33.333 3.76 3.76 37.26 2.57
2968 4122 8.276325 CGACAGCCTTTGAGTAATACATTATTC 58.724 37.037 0.00 0.00 31.83 1.75
2969 4123 7.985184 TCGACAGCCTTTGAGTAATACATTATT 59.015 33.333 0.00 0.00 0.00 1.40
2970 4124 7.497595 TCGACAGCCTTTGAGTAATACATTAT 58.502 34.615 0.00 0.00 0.00 1.28
2971 4125 6.869695 TCGACAGCCTTTGAGTAATACATTA 58.130 36.000 0.00 0.00 0.00 1.90
2972 4126 5.730550 TCGACAGCCTTTGAGTAATACATT 58.269 37.500 0.00 0.00 0.00 2.71
2973 4127 5.339008 TCGACAGCCTTTGAGTAATACAT 57.661 39.130 0.00 0.00 0.00 2.29
2974 4128 4.381612 CCTCGACAGCCTTTGAGTAATACA 60.382 45.833 0.00 0.00 0.00 2.29
2975 4129 4.113354 CCTCGACAGCCTTTGAGTAATAC 58.887 47.826 0.00 0.00 0.00 1.89
2976 4130 3.767673 ACCTCGACAGCCTTTGAGTAATA 59.232 43.478 0.00 0.00 0.00 0.98
2977 4131 2.567615 ACCTCGACAGCCTTTGAGTAAT 59.432 45.455 0.00 0.00 0.00 1.89
2978 4132 1.968493 ACCTCGACAGCCTTTGAGTAA 59.032 47.619 0.00 0.00 0.00 2.24
2979 4133 1.272490 CACCTCGACAGCCTTTGAGTA 59.728 52.381 0.00 0.00 0.00 2.59
2980 4134 0.034059 CACCTCGACAGCCTTTGAGT 59.966 55.000 0.00 0.00 0.00 3.41
2981 4135 0.671781 CCACCTCGACAGCCTTTGAG 60.672 60.000 0.00 0.00 0.00 3.02
2982 4136 1.371183 CCACCTCGACAGCCTTTGA 59.629 57.895 0.00 0.00 0.00 2.69
2983 4137 2.328099 GCCACCTCGACAGCCTTTG 61.328 63.158 0.00 0.00 0.00 2.77
2984 4138 2.032681 GCCACCTCGACAGCCTTT 59.967 61.111 0.00 0.00 0.00 3.11
2985 4139 4.379243 CGCCACCTCGACAGCCTT 62.379 66.667 0.00 0.00 0.00 4.35
2989 4143 2.642254 TAACCCGCCACCTCGACAG 61.642 63.158 0.00 0.00 0.00 3.51
2990 4144 2.601067 TAACCCGCCACCTCGACA 60.601 61.111 0.00 0.00 0.00 4.35
2991 4145 2.125793 GTAACCCGCCACCTCGAC 60.126 66.667 0.00 0.00 0.00 4.20
2992 4146 2.601067 TGTAACCCGCCACCTCGA 60.601 61.111 0.00 0.00 0.00 4.04
2993 4147 2.125673 CTGTAACCCGCCACCTCG 60.126 66.667 0.00 0.00 0.00 4.63
2994 4148 0.252197 ATTCTGTAACCCGCCACCTC 59.748 55.000 0.00 0.00 0.00 3.85
2995 4149 0.696501 AATTCTGTAACCCGCCACCT 59.303 50.000 0.00 0.00 0.00 4.00
2996 4150 2.011947 GTAATTCTGTAACCCGCCACC 58.988 52.381 0.00 0.00 0.00 4.61
2997 4151 2.702261 TGTAATTCTGTAACCCGCCAC 58.298 47.619 0.00 0.00 0.00 5.01
2998 4152 3.340034 CTTGTAATTCTGTAACCCGCCA 58.660 45.455 0.00 0.00 0.00 5.69
2999 4153 2.681344 CCTTGTAATTCTGTAACCCGCC 59.319 50.000 0.00 0.00 0.00 6.13
3037 4516 3.837146 TCTCATGGCATTCCTATCTCTCC 59.163 47.826 0.00 0.00 0.00 3.71
3043 4522 5.121380 ACACTTTCTCATGGCATTCCTAT 57.879 39.130 0.00 0.00 0.00 2.57
3050 4529 1.003580 GGAGGACACTTTCTCATGGCA 59.996 52.381 0.00 0.00 0.00 4.92
3055 4534 2.972021 TGACATGGAGGACACTTTCTCA 59.028 45.455 0.00 0.00 0.00 3.27
3063 4542 1.715785 TGTGAGTGACATGGAGGACA 58.284 50.000 0.00 0.00 0.00 4.02
3132 4611 7.369551 TCGACCAACATTCTATAATAACCCT 57.630 36.000 0.00 0.00 0.00 4.34
3186 4665 2.302260 CACGCTCTAGAAGATCTGGGA 58.698 52.381 0.00 0.00 0.00 4.37
3198 4677 0.108804 GTGCTGCTTACCACGCTCTA 60.109 55.000 0.00 0.00 0.00 2.43
3200 4679 2.391389 GGTGCTGCTTACCACGCTC 61.391 63.158 0.00 0.00 38.12 5.03
3228 4707 0.475828 ACCTACCTGCCCTCCAAGTT 60.476 55.000 0.00 0.00 0.00 2.66
3235 4714 1.686110 CTTCGGACCTACCTGCCCT 60.686 63.158 0.00 0.00 36.31 5.19
3260 4739 6.155475 AGTGATGTATCTGAGCTTTAGGAC 57.845 41.667 0.00 0.00 0.00 3.85
3326 4807 2.939103 GTTGTTCATCTCATTCCCTCGG 59.061 50.000 0.00 0.00 0.00 4.63
3327 4808 3.599343 TGTTGTTCATCTCATTCCCTCG 58.401 45.455 0.00 0.00 0.00 4.63
3336 4817 4.860907 GCCATCAACATTGTTGTTCATCTC 59.139 41.667 24.71 8.88 44.24 2.75
3441 4923 4.441356 CCAAGGAAGCTAAAAGTGTTTGCA 60.441 41.667 2.27 0.00 0.00 4.08
3487 4970 3.235195 CCGAACTTATCCTAATCGCTCG 58.765 50.000 0.00 0.00 32.46 5.03
3500 4983 0.107703 CATGAGCAGGCCCGAACTTA 60.108 55.000 0.00 0.00 0.00 2.24
3531 5014 5.711976 CCATAACTTCTCCACCAAGAAACAT 59.288 40.000 0.00 0.00 34.95 2.71
3532 5015 5.070001 CCATAACTTCTCCACCAAGAAACA 58.930 41.667 0.00 0.00 34.95 2.83
3533 5016 5.181433 GTCCATAACTTCTCCACCAAGAAAC 59.819 44.000 0.00 0.00 34.95 2.78
3536 5019 3.263425 GGTCCATAACTTCTCCACCAAGA 59.737 47.826 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.