Multiple sequence alignment - TraesCS7B01G273700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G273700 chr7B 100.000 3563 0 0 1 3563 502732926 502736488 0.000000e+00 6580.0
1 TraesCS7B01G273700 chr7B 79.323 1388 246 35 1165 2533 502316892 502318257 0.000000e+00 935.0
2 TraesCS7B01G273700 chr7B 74.617 457 76 24 8 435 706075131 706075576 7.910000e-37 165.0
3 TraesCS7B01G273700 chr7B 80.000 100 13 4 492 590 202273086 202273179 2.300000e-07 67.6
4 TraesCS7B01G273700 chr7D 95.307 2216 77 11 786 2996 477855363 477857556 0.000000e+00 3491.0
5 TraesCS7B01G273700 chr7D 78.944 1382 262 25 1165 2533 477659390 477660755 0.000000e+00 913.0
6 TraesCS7B01G273700 chr7D 88.447 528 31 9 3037 3563 477857919 477858417 8.460000e-171 610.0
7 TraesCS7B01G273700 chr7D 79.125 297 45 4 15 295 426828909 426829204 4.700000e-44 189.0
8 TraesCS7B01G273700 chr7A 92.424 2442 112 24 792 3193 518524963 518522555 0.000000e+00 3417.0
9 TraesCS7B01G273700 chr7A 78.596 1481 272 39 1083 2542 518571485 518570029 0.000000e+00 937.0
10 TraesCS7B01G273700 chr7A 81.250 176 32 1 3230 3404 518511933 518511758 1.330000e-29 141.0
11 TraesCS7B01G273700 chr7A 94.000 50 2 1 3185 3234 518520687 518520639 1.370000e-09 75.0
12 TraesCS7B01G273700 chr4D 86.115 1570 200 12 996 2551 78779617 78781182 0.000000e+00 1676.0
13 TraesCS7B01G273700 chr4D 81.818 121 21 1 561 681 82521069 82521188 2.260000e-17 100.0
14 TraesCS7B01G273700 chr4D 83.000 100 7 6 493 590 148696178 148696269 8.200000e-12 82.4
15 TraesCS7B01G273700 chr4B 85.760 1566 203 13 996 2545 110228737 110230298 0.000000e+00 1639.0
16 TraesCS7B01G273700 chr4B 83.445 1486 204 24 1081 2545 667426650 667428114 0.000000e+00 1343.0
17 TraesCS7B01G273700 chr4A 85.623 1565 201 16 996 2545 507592555 507594110 0.000000e+00 1622.0
18 TraesCS7B01G273700 chr2B 83.110 1569 221 17 1007 2541 762118358 762116800 0.000000e+00 1389.0
19 TraesCS7B01G273700 chr2B 79.839 124 16 7 172 295 724407407 724407293 8.200000e-12 82.4
20 TraesCS7B01G273700 chr2B 100.000 29 0 0 492 520 27719329 27719301 2.000000e-03 54.7
21 TraesCS7B01G273700 chr2A 82.908 1568 229 14 1007 2541 753106172 753104611 0.000000e+00 1375.0
22 TraesCS7B01G273700 chr2A 84.946 93 6 7 484 574 750627823 750627909 1.760000e-13 87.9
23 TraesCS7B01G273700 chr2A 83.871 93 7 7 484 574 750589363 750589449 8.200000e-12 82.4
24 TraesCS7B01G273700 chr2A 85.542 83 6 5 492 574 750737208 750737132 8.200000e-12 82.4
25 TraesCS7B01G273700 chrUn 83.842 1473 198 23 1086 2538 30095185 30096637 0.000000e+00 1365.0
26 TraesCS7B01G273700 chr3D 79.467 375 56 9 1 358 291167698 291168068 2.750000e-61 246.0
27 TraesCS7B01G273700 chr1D 76.823 384 72 5 1 367 344690893 344690510 2.170000e-47 200.0
28 TraesCS7B01G273700 chr3A 76.946 334 64 9 2216 2538 79236366 79236697 1.020000e-40 178.0
29 TraesCS7B01G273700 chr1B 80.000 210 40 2 175 383 660919644 660919436 1.710000e-33 154.0
30 TraesCS7B01G273700 chr1A 87.407 135 14 3 274 407 364895305 364895437 6.160000e-33 152.0
31 TraesCS7B01G273700 chr6B 94.340 53 3 0 171 223 672940953 672940901 8.200000e-12 82.4
32 TraesCS7B01G273700 chr6B 83.516 91 6 7 484 572 195527269 195527352 3.810000e-10 76.8
33 TraesCS7B01G273700 chr6A 97.143 35 1 0 492 526 596701103 596701137 3.840000e-05 60.2
34 TraesCS7B01G273700 chr5B 89.583 48 2 3 546 591 426256093 426256139 1.380000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G273700 chr7B 502732926 502736488 3562 False 6580.0 6580 100.000 1 3563 1 chr7B.!!$F3 3562
1 TraesCS7B01G273700 chr7B 502316892 502318257 1365 False 935.0 935 79.323 1165 2533 1 chr7B.!!$F2 1368
2 TraesCS7B01G273700 chr7D 477855363 477858417 3054 False 2050.5 3491 91.877 786 3563 2 chr7D.!!$F3 2777
3 TraesCS7B01G273700 chr7D 477659390 477660755 1365 False 913.0 913 78.944 1165 2533 1 chr7D.!!$F2 1368
4 TraesCS7B01G273700 chr7A 518520639 518524963 4324 True 1746.0 3417 93.212 792 3234 2 chr7A.!!$R3 2442
5 TraesCS7B01G273700 chr7A 518570029 518571485 1456 True 937.0 937 78.596 1083 2542 1 chr7A.!!$R2 1459
6 TraesCS7B01G273700 chr4D 78779617 78781182 1565 False 1676.0 1676 86.115 996 2551 1 chr4D.!!$F1 1555
7 TraesCS7B01G273700 chr4B 110228737 110230298 1561 False 1639.0 1639 85.760 996 2545 1 chr4B.!!$F1 1549
8 TraesCS7B01G273700 chr4B 667426650 667428114 1464 False 1343.0 1343 83.445 1081 2545 1 chr4B.!!$F2 1464
9 TraesCS7B01G273700 chr4A 507592555 507594110 1555 False 1622.0 1622 85.623 996 2545 1 chr4A.!!$F1 1549
10 TraesCS7B01G273700 chr2B 762116800 762118358 1558 True 1389.0 1389 83.110 1007 2541 1 chr2B.!!$R3 1534
11 TraesCS7B01G273700 chr2A 753104611 753106172 1561 True 1375.0 1375 82.908 1007 2541 1 chr2A.!!$R2 1534
12 TraesCS7B01G273700 chrUn 30095185 30096637 1452 False 1365.0 1365 83.842 1086 2538 1 chrUn.!!$F1 1452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
262 263 0.033208 CCCTGCCTTGGCTCCATAAA 60.033 55.0 13.18 0.00 0.00 1.40 F
375 376 0.034896 CATATACCTCCGGGGCACAC 59.965 60.0 0.00 0.00 39.10 3.82 F
434 435 0.103208 CCCGGCAGTAGACTAGCAAG 59.897 60.0 0.00 0.00 0.00 4.01 F
442 443 0.108329 TAGACTAGCAAGTTGCCGCC 60.108 55.0 24.02 8.48 46.52 6.13 F
685 686 0.109597 CAGTTTGCCGCATCCTTGTC 60.110 55.0 0.00 0.00 0.00 3.18 F
695 696 0.742281 CATCCTTGTCCGCAGACTGG 60.742 60.0 4.26 4.23 43.91 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1918 1970 3.770040 CTGGTCGCCCATGGTCGA 61.770 66.667 14.99 14.99 40.90 4.20 R
2358 2431 1.503542 CCGGTAGTTCACGTACGCT 59.496 57.895 16.72 6.78 0.00 5.07 R
2463 2539 1.248785 ACGCGAGCCTCTGGAAGTTA 61.249 55.000 15.93 0.00 33.76 2.24 R
2508 2584 3.821600 TCTGCTCGTTTCTGAAGTAGTCT 59.178 43.478 0.00 0.00 0.00 3.24 R
2538 2614 1.354101 TACGTCCTTGGACCAATGGT 58.646 50.000 3.74 3.74 39.44 3.55 R
2696 2772 1.825090 TTGGTTGCTGCATCCTACTG 58.175 50.000 25.44 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.513897 GTACCATGCCTCCCGTGC 60.514 66.667 0.00 0.00 0.00 5.34
18 19 3.792736 TACCATGCCTCCCGTGCC 61.793 66.667 0.00 0.00 0.00 5.01
21 22 4.415150 CATGCCTCCCGTGCCTGT 62.415 66.667 0.00 0.00 0.00 4.00
22 23 4.415150 ATGCCTCCCGTGCCTGTG 62.415 66.667 0.00 0.00 0.00 3.66
25 26 4.394712 CCTCCCGTGCCTGTGACC 62.395 72.222 0.00 0.00 0.00 4.02
26 27 4.742201 CTCCCGTGCCTGTGACCG 62.742 72.222 0.00 0.00 0.00 4.79
35 36 4.457496 CTGTGACCGCGCCATCCT 62.457 66.667 0.00 0.00 0.00 3.24
36 37 4.451150 TGTGACCGCGCCATCCTC 62.451 66.667 0.00 0.00 0.00 3.71
42 43 4.812476 CGCGCCATCCTCCGTCAA 62.812 66.667 0.00 0.00 0.00 3.18
43 44 2.435938 GCGCCATCCTCCGTCAAA 60.436 61.111 0.00 0.00 0.00 2.69
44 45 2.038269 GCGCCATCCTCCGTCAAAA 61.038 57.895 0.00 0.00 0.00 2.44
45 46 1.794222 CGCCATCCTCCGTCAAAAC 59.206 57.895 0.00 0.00 0.00 2.43
54 55 3.948081 CGTCAAAACGCGCATAGC 58.052 55.556 5.73 0.00 42.82 2.97
55 56 1.580132 CGTCAAAACGCGCATAGCC 60.580 57.895 5.73 0.00 42.82 3.93
56 57 1.499949 GTCAAAACGCGCATAGCCA 59.500 52.632 5.73 0.00 44.76 4.75
57 58 0.098728 GTCAAAACGCGCATAGCCAT 59.901 50.000 5.73 0.00 44.76 4.40
58 59 0.098552 TCAAAACGCGCATAGCCATG 59.901 50.000 5.73 0.00 44.76 3.66
67 68 2.324215 CATAGCCATGCCTTGTCGG 58.676 57.895 0.00 0.00 0.00 4.79
77 78 3.914984 CCTTGTCGGCAGAGAAAGA 57.085 52.632 9.83 0.00 0.00 2.52
78 79 2.169832 CCTTGTCGGCAGAGAAAGAA 57.830 50.000 9.83 0.00 0.00 2.52
79 80 2.072298 CCTTGTCGGCAGAGAAAGAAG 58.928 52.381 9.83 0.00 0.00 2.85
80 81 1.462670 CTTGTCGGCAGAGAAAGAAGC 59.537 52.381 0.00 0.00 0.00 3.86
81 82 0.320771 TGTCGGCAGAGAAAGAAGCC 60.321 55.000 0.00 0.00 43.61 4.35
84 85 2.461416 GGCAGAGAAAGAAGCCGAC 58.539 57.895 0.00 0.00 37.41 4.79
85 86 0.036858 GGCAGAGAAAGAAGCCGACT 60.037 55.000 0.00 0.00 37.41 4.18
86 87 1.074752 GCAGAGAAAGAAGCCGACTG 58.925 55.000 0.00 0.00 0.00 3.51
87 88 1.074752 CAGAGAAAGAAGCCGACTGC 58.925 55.000 0.00 0.00 41.71 4.40
96 97 2.959071 GCCGACTGCGCAGAGATC 60.959 66.667 42.03 27.47 35.83 2.75
97 98 2.653448 CCGACTGCGCAGAGATCG 60.653 66.667 42.03 35.57 35.83 3.69
98 99 2.405191 CGACTGCGCAGAGATCGA 59.595 61.111 42.03 1.15 34.77 3.59
99 100 1.936880 CGACTGCGCAGAGATCGAC 60.937 63.158 42.03 20.62 34.77 4.20
100 101 1.936880 GACTGCGCAGAGATCGACG 60.937 63.158 42.03 15.28 0.00 5.12
101 102 2.311080 GACTGCGCAGAGATCGACGA 62.311 60.000 42.03 0.00 0.00 4.20
102 103 1.653835 CTGCGCAGAGATCGACGAG 60.654 63.158 33.66 0.02 0.00 4.18
103 104 2.316361 CTGCGCAGAGATCGACGAGT 62.316 60.000 33.66 0.00 0.00 4.18
104 105 1.652930 GCGCAGAGATCGACGAGTC 60.653 63.158 0.30 2.70 0.00 3.36
114 115 2.102553 GACGAGTCGGTGGCTAGC 59.897 66.667 18.30 6.04 0.00 3.42
115 116 2.675423 ACGAGTCGGTGGCTAGCA 60.675 61.111 18.24 0.00 0.00 3.49
116 117 2.202623 CGAGTCGGTGGCTAGCAC 60.203 66.667 18.24 12.44 0.00 4.40
117 118 2.202623 GAGTCGGTGGCTAGCACG 60.203 66.667 18.24 17.20 0.00 5.34
118 119 2.989824 AGTCGGTGGCTAGCACGT 60.990 61.111 18.24 0.24 0.00 4.49
119 120 2.048503 GTCGGTGGCTAGCACGTT 60.049 61.111 18.24 0.00 0.00 3.99
120 121 2.092882 GTCGGTGGCTAGCACGTTC 61.093 63.158 18.24 11.19 0.00 3.95
121 122 3.179265 CGGTGGCTAGCACGTTCG 61.179 66.667 18.24 8.74 0.00 3.95
122 123 3.488090 GGTGGCTAGCACGTTCGC 61.488 66.667 18.24 4.96 0.00 4.70
133 134 2.126618 CGTTCGCGTCTACTGCCA 60.127 61.111 5.77 0.00 35.57 4.92
134 135 1.731613 CGTTCGCGTCTACTGCCAA 60.732 57.895 5.77 0.00 35.57 4.52
135 136 1.779683 GTTCGCGTCTACTGCCAAC 59.220 57.895 5.77 0.00 0.00 3.77
136 137 0.942410 GTTCGCGTCTACTGCCAACA 60.942 55.000 5.77 0.00 34.23 3.33
137 138 0.037697 TTCGCGTCTACTGCCAACAT 60.038 50.000 5.77 0.00 0.00 2.71
138 139 0.457853 TCGCGTCTACTGCCAACATC 60.458 55.000 5.77 0.00 0.00 3.06
139 140 0.735978 CGCGTCTACTGCCAACATCA 60.736 55.000 0.00 0.00 0.00 3.07
140 141 1.438651 GCGTCTACTGCCAACATCAA 58.561 50.000 0.00 0.00 0.00 2.57
141 142 1.394917 GCGTCTACTGCCAACATCAAG 59.605 52.381 0.00 0.00 0.00 3.02
142 143 2.002586 CGTCTACTGCCAACATCAAGG 58.997 52.381 0.00 0.00 0.00 3.61
143 144 2.359900 GTCTACTGCCAACATCAAGGG 58.640 52.381 0.00 0.00 0.00 3.95
144 145 2.027192 GTCTACTGCCAACATCAAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
145 146 2.642311 TCTACTGCCAACATCAAGGGAA 59.358 45.455 0.00 0.00 0.00 3.97
146 147 2.380064 ACTGCCAACATCAAGGGAAA 57.620 45.000 0.00 0.00 0.00 3.13
147 148 2.242043 ACTGCCAACATCAAGGGAAAG 58.758 47.619 0.00 0.00 0.00 2.62
148 149 2.242043 CTGCCAACATCAAGGGAAAGT 58.758 47.619 0.00 0.00 0.00 2.66
149 150 3.181434 ACTGCCAACATCAAGGGAAAGTA 60.181 43.478 0.00 0.00 0.00 2.24
150 151 3.420893 TGCCAACATCAAGGGAAAGTAG 58.579 45.455 0.00 0.00 0.00 2.57
151 152 3.073798 TGCCAACATCAAGGGAAAGTAGA 59.926 43.478 0.00 0.00 0.00 2.59
152 153 4.079253 GCCAACATCAAGGGAAAGTAGAA 58.921 43.478 0.00 0.00 0.00 2.10
153 154 4.082733 GCCAACATCAAGGGAAAGTAGAAC 60.083 45.833 0.00 0.00 0.00 3.01
154 155 5.070001 CCAACATCAAGGGAAAGTAGAACA 58.930 41.667 0.00 0.00 0.00 3.18
155 156 5.711976 CCAACATCAAGGGAAAGTAGAACAT 59.288 40.000 0.00 0.00 0.00 2.71
156 157 6.349611 CCAACATCAAGGGAAAGTAGAACATG 60.350 42.308 0.00 0.00 0.00 3.21
157 158 5.256474 ACATCAAGGGAAAGTAGAACATGG 58.744 41.667 0.00 0.00 0.00 3.66
158 159 4.301072 TCAAGGGAAAGTAGAACATGGG 57.699 45.455 0.00 0.00 0.00 4.00
159 160 3.913799 TCAAGGGAAAGTAGAACATGGGA 59.086 43.478 0.00 0.00 0.00 4.37
160 161 4.019321 TCAAGGGAAAGTAGAACATGGGAG 60.019 45.833 0.00 0.00 0.00 4.30
161 162 2.846827 AGGGAAAGTAGAACATGGGAGG 59.153 50.000 0.00 0.00 0.00 4.30
162 163 2.644676 GGAAAGTAGAACATGGGAGGC 58.355 52.381 0.00 0.00 0.00 4.70
163 164 2.644676 GAAAGTAGAACATGGGAGGCC 58.355 52.381 0.00 0.00 0.00 5.19
164 165 0.541863 AAGTAGAACATGGGAGGCCG 59.458 55.000 0.00 0.00 0.00 6.13
165 166 0.617820 AGTAGAACATGGGAGGCCGT 60.618 55.000 0.00 0.00 0.00 5.68
166 167 0.179081 GTAGAACATGGGAGGCCGTC 60.179 60.000 0.00 0.00 0.00 4.79
167 168 1.672854 TAGAACATGGGAGGCCGTCG 61.673 60.000 0.00 0.00 0.00 5.12
168 169 4.778143 AACATGGGAGGCCGTCGC 62.778 66.667 0.00 4.67 38.63 5.19
202 203 4.683334 GTCGCCGGCTTGCACAAC 62.683 66.667 26.68 7.09 0.00 3.32
215 216 2.203294 ACAACCGGTGACTTGCCC 60.203 61.111 8.52 0.00 0.00 5.36
216 217 3.353836 CAACCGGTGACTTGCCCG 61.354 66.667 8.52 0.00 43.82 6.13
220 221 3.047877 CGGTGACTTGCCCGGTTC 61.048 66.667 0.00 0.00 40.54 3.62
221 222 2.430367 GGTGACTTGCCCGGTTCT 59.570 61.111 0.00 0.00 0.00 3.01
222 223 1.228154 GGTGACTTGCCCGGTTCTT 60.228 57.895 0.00 0.00 0.00 2.52
223 224 1.515521 GGTGACTTGCCCGGTTCTTG 61.516 60.000 0.00 0.00 0.00 3.02
224 225 0.534203 GTGACTTGCCCGGTTCTTGA 60.534 55.000 0.00 0.00 0.00 3.02
225 226 0.250295 TGACTTGCCCGGTTCTTGAG 60.250 55.000 0.00 0.00 0.00 3.02
226 227 1.578206 GACTTGCCCGGTTCTTGAGC 61.578 60.000 0.00 0.00 0.00 4.26
232 233 3.793144 CGGTTCTTGAGCGCAGGC 61.793 66.667 11.47 0.00 42.83 4.85
233 234 3.435186 GGTTCTTGAGCGCAGGCC 61.435 66.667 11.47 0.00 41.24 5.19
234 235 2.669569 GTTCTTGAGCGCAGGCCA 60.670 61.111 11.47 0.00 41.24 5.36
235 236 2.042831 GTTCTTGAGCGCAGGCCAT 61.043 57.895 11.47 0.00 41.24 4.40
236 237 1.746615 TTCTTGAGCGCAGGCCATC 60.747 57.895 11.47 0.00 41.24 3.51
237 238 3.570638 CTTGAGCGCAGGCCATCG 61.571 66.667 11.47 9.15 41.24 3.84
238 239 4.393155 TTGAGCGCAGGCCATCGT 62.393 61.111 11.47 0.00 41.24 3.73
239 240 4.819761 TGAGCGCAGGCCATCGTC 62.820 66.667 11.47 8.61 41.24 4.20
259 260 3.747579 CCCCTGCCTTGGCTCCAT 61.748 66.667 13.18 0.00 0.00 3.41
260 261 2.386100 CCCCTGCCTTGGCTCCATA 61.386 63.158 13.18 0.00 0.00 2.74
261 262 1.614711 CCCTGCCTTGGCTCCATAA 59.385 57.895 13.18 0.00 0.00 1.90
262 263 0.033208 CCCTGCCTTGGCTCCATAAA 60.033 55.000 13.18 0.00 0.00 1.40
263 264 1.619432 CCCTGCCTTGGCTCCATAAAA 60.619 52.381 13.18 0.00 0.00 1.52
264 265 1.753073 CCTGCCTTGGCTCCATAAAAG 59.247 52.381 13.18 0.00 0.00 2.27
265 266 1.135721 CTGCCTTGGCTCCATAAAAGC 59.864 52.381 13.18 0.00 39.09 3.51
266 267 0.101219 GCCTTGGCTCCATAAAAGCG 59.899 55.000 4.11 0.00 40.77 4.68
267 268 0.740737 CCTTGGCTCCATAAAAGCGG 59.259 55.000 0.00 0.00 40.77 5.52
268 269 1.681780 CCTTGGCTCCATAAAAGCGGA 60.682 52.381 0.00 0.00 40.77 5.54
272 273 2.311294 CTCCATAAAAGCGGAGGCG 58.689 57.895 0.00 0.00 44.37 5.52
273 274 1.776034 CTCCATAAAAGCGGAGGCGC 61.776 60.000 0.00 0.00 44.37 6.53
274 275 2.715624 CATAAAAGCGGAGGCGCC 59.284 61.111 21.89 21.89 46.35 6.53
275 276 2.516225 ATAAAAGCGGAGGCGCCC 60.516 61.111 26.15 15.07 46.35 6.13
276 277 4.789123 TAAAAGCGGAGGCGCCCC 62.789 66.667 26.15 22.78 46.35 5.80
294 295 3.009115 CCTTCCCCTCCGGCTGAA 61.009 66.667 0.00 0.00 0.00 3.02
295 296 2.602676 CCTTCCCCTCCGGCTGAAA 61.603 63.158 0.00 0.00 0.00 2.69
296 297 1.377333 CTTCCCCTCCGGCTGAAAC 60.377 63.158 0.00 0.00 0.00 2.78
297 298 2.124507 CTTCCCCTCCGGCTGAAACA 62.125 60.000 0.00 0.00 0.00 2.83
298 299 1.497309 TTCCCCTCCGGCTGAAACAT 61.497 55.000 0.00 0.00 0.00 2.71
299 300 1.452108 CCCCTCCGGCTGAAACATC 60.452 63.158 0.00 0.00 0.00 3.06
300 301 1.299648 CCCTCCGGCTGAAACATCA 59.700 57.895 0.00 0.00 0.00 3.07
301 302 0.745845 CCCTCCGGCTGAAACATCAG 60.746 60.000 0.00 1.50 40.51 2.90
307 308 2.787249 CTGAAACATCAGCCGGCG 59.213 61.111 23.20 16.49 0.00 6.46
308 309 2.745884 TGAAACATCAGCCGGCGG 60.746 61.111 24.35 24.35 0.00 6.13
309 310 2.746277 GAAACATCAGCCGGCGGT 60.746 61.111 28.82 17.33 0.00 5.68
310 311 2.282180 AAACATCAGCCGGCGGTT 60.282 55.556 28.82 20.57 0.00 4.44
311 312 2.253414 GAAACATCAGCCGGCGGTTC 62.253 60.000 28.82 19.13 0.00 3.62
312 313 4.778143 ACATCAGCCGGCGGTTCC 62.778 66.667 28.82 11.20 0.00 3.62
313 314 4.776322 CATCAGCCGGCGGTTCCA 62.776 66.667 28.82 10.79 34.01 3.53
314 315 4.778143 ATCAGCCGGCGGTTCCAC 62.778 66.667 28.82 10.36 34.01 4.02
322 323 3.998672 GCGGTTCCACTCCGGTGA 61.999 66.667 11.17 0.00 46.90 4.02
323 324 2.261671 CGGTTCCACTCCGGTGAG 59.738 66.667 11.17 1.68 45.61 3.51
324 325 2.047179 GGTTCCACTCCGGTGAGC 60.047 66.667 11.17 1.21 45.61 4.26
325 326 2.432628 GTTCCACTCCGGTGAGCG 60.433 66.667 11.17 0.00 45.61 5.03
326 327 2.915659 TTCCACTCCGGTGAGCGT 60.916 61.111 11.17 0.00 45.61 5.07
327 328 2.504274 TTCCACTCCGGTGAGCGTT 61.504 57.895 11.17 0.00 45.61 4.84
328 329 2.709125 TTCCACTCCGGTGAGCGTTG 62.709 60.000 11.17 0.00 45.61 4.10
329 330 2.738521 CACTCCGGTGAGCGTTGG 60.739 66.667 11.17 0.00 45.61 3.77
330 331 4.003788 ACTCCGGTGAGCGTTGGG 62.004 66.667 11.17 0.00 42.74 4.12
331 332 3.691342 CTCCGGTGAGCGTTGGGA 61.691 66.667 0.00 0.00 0.00 4.37
332 333 3.234630 CTCCGGTGAGCGTTGGGAA 62.235 63.158 0.00 0.00 0.00 3.97
333 334 2.281208 CCGGTGAGCGTTGGGAAA 60.281 61.111 2.58 0.00 0.00 3.13
334 335 2.325082 CCGGTGAGCGTTGGGAAAG 61.325 63.158 2.58 0.00 0.00 2.62
335 336 1.597027 CGGTGAGCGTTGGGAAAGT 60.597 57.895 0.00 0.00 0.00 2.66
336 337 1.841663 CGGTGAGCGTTGGGAAAGTG 61.842 60.000 0.00 0.00 0.00 3.16
337 338 0.534203 GGTGAGCGTTGGGAAAGTGA 60.534 55.000 0.00 0.00 0.00 3.41
338 339 0.868406 GTGAGCGTTGGGAAAGTGAG 59.132 55.000 0.00 0.00 0.00 3.51
339 340 0.884704 TGAGCGTTGGGAAAGTGAGC 60.885 55.000 0.00 0.00 0.00 4.26
340 341 1.578206 GAGCGTTGGGAAAGTGAGCC 61.578 60.000 0.00 0.00 0.00 4.70
341 342 2.966309 GCGTTGGGAAAGTGAGCCG 61.966 63.158 0.00 0.00 0.00 5.52
342 343 2.954611 GTTGGGAAAGTGAGCCGC 59.045 61.111 0.00 0.00 0.00 6.53
343 344 2.282180 TTGGGAAAGTGAGCCGCC 60.282 61.111 0.00 0.00 0.00 6.13
344 345 4.697756 TGGGAAAGTGAGCCGCCG 62.698 66.667 0.00 0.00 0.00 6.46
345 346 4.699522 GGGAAAGTGAGCCGCCGT 62.700 66.667 0.00 0.00 0.00 5.68
346 347 2.668550 GGAAAGTGAGCCGCCGTT 60.669 61.111 0.00 0.00 0.00 4.44
347 348 2.258726 GGAAAGTGAGCCGCCGTTT 61.259 57.895 0.00 0.00 0.00 3.60
348 349 1.082104 GAAAGTGAGCCGCCGTTTG 60.082 57.895 0.00 0.00 0.00 2.93
349 350 2.458006 GAAAGTGAGCCGCCGTTTGG 62.458 60.000 0.00 0.00 38.77 3.28
362 363 3.609103 CCGTTTGGCTGAAGCATATAC 57.391 47.619 4.43 0.00 44.36 1.47
363 364 2.290641 CCGTTTGGCTGAAGCATATACC 59.709 50.000 4.43 0.00 44.36 2.73
364 365 3.206150 CGTTTGGCTGAAGCATATACCT 58.794 45.455 4.43 0.00 44.36 3.08
365 366 3.248602 CGTTTGGCTGAAGCATATACCTC 59.751 47.826 4.43 0.00 44.36 3.85
366 367 3.492102 TTGGCTGAAGCATATACCTCC 57.508 47.619 4.43 0.00 44.36 4.30
367 368 1.344438 TGGCTGAAGCATATACCTCCG 59.656 52.381 4.43 0.00 44.36 4.63
368 369 1.338200 GGCTGAAGCATATACCTCCGG 60.338 57.143 4.43 0.00 44.36 5.14
369 370 1.338200 GCTGAAGCATATACCTCCGGG 60.338 57.143 0.00 0.00 41.59 5.73
370 371 1.276421 CTGAAGCATATACCTCCGGGG 59.724 57.143 0.00 0.00 41.89 5.73
371 372 0.036294 GAAGCATATACCTCCGGGGC 60.036 60.000 0.00 0.00 39.10 5.80
372 373 0.766674 AAGCATATACCTCCGGGGCA 60.767 55.000 0.00 0.00 39.10 5.36
373 374 1.003718 GCATATACCTCCGGGGCAC 60.004 63.158 0.00 0.00 39.10 5.01
374 375 1.764571 GCATATACCTCCGGGGCACA 61.765 60.000 0.00 0.00 39.10 4.57
375 376 0.034896 CATATACCTCCGGGGCACAC 59.965 60.000 0.00 0.00 39.10 3.82
376 377 1.469335 ATATACCTCCGGGGCACACG 61.469 60.000 0.00 0.00 39.10 4.49
377 378 2.570774 TATACCTCCGGGGCACACGA 62.571 60.000 0.00 0.00 39.10 4.35
380 381 4.742201 CTCCGGGGCACACGACTG 62.742 72.222 0.00 0.00 0.00 3.51
385 386 3.986006 GGGCACACGACTGTCGGA 61.986 66.667 30.81 0.00 45.59 4.55
386 387 2.733593 GGCACACGACTGTCGGAC 60.734 66.667 30.81 14.34 45.59 4.79
387 388 2.027024 GCACACGACTGTCGGACA 59.973 61.111 30.81 10.88 45.59 4.02
388 389 1.372997 GCACACGACTGTCGGACAT 60.373 57.895 30.81 10.02 45.59 3.06
389 390 1.617755 GCACACGACTGTCGGACATG 61.618 60.000 30.81 22.20 45.59 3.21
390 391 0.318699 CACACGACTGTCGGACATGT 60.319 55.000 30.81 22.80 45.59 3.21
391 392 0.318699 ACACGACTGTCGGACATGTG 60.319 55.000 30.81 24.50 45.59 3.21
392 393 1.008875 CACGACTGTCGGACATGTGG 61.009 60.000 30.81 18.35 45.59 4.17
393 394 1.176619 ACGACTGTCGGACATGTGGA 61.177 55.000 30.81 0.00 45.59 4.02
394 395 0.732880 CGACTGTCGGACATGTGGAC 60.733 60.000 21.78 11.35 36.00 4.02
395 396 0.732880 GACTGTCGGACATGTGGACG 60.733 60.000 11.86 5.39 33.45 4.79
396 397 1.176619 ACTGTCGGACATGTGGACGA 61.177 55.000 11.86 7.99 33.45 4.20
397 398 4.164252 GTCGGACATGTGGACGAC 57.836 61.111 22.97 22.97 46.89 4.34
398 399 3.766432 TCGGACATGTGGACGACA 58.234 55.556 1.15 0.00 39.53 4.35
399 400 2.042800 TCGGACATGTGGACGACAA 58.957 52.632 1.15 0.00 38.36 3.18
400 401 0.606096 TCGGACATGTGGACGACAAT 59.394 50.000 1.15 0.00 38.36 2.71
401 402 0.721154 CGGACATGTGGACGACAATG 59.279 55.000 1.15 0.00 38.36 2.82
402 403 1.086696 GGACATGTGGACGACAATGG 58.913 55.000 1.15 0.00 38.36 3.16
403 404 1.338674 GGACATGTGGACGACAATGGA 60.339 52.381 1.15 0.00 38.36 3.41
404 405 2.002586 GACATGTGGACGACAATGGAG 58.997 52.381 1.15 0.00 38.36 3.86
405 406 1.623311 ACATGTGGACGACAATGGAGA 59.377 47.619 0.00 0.00 38.36 3.71
406 407 2.237143 ACATGTGGACGACAATGGAGAT 59.763 45.455 0.00 0.00 38.36 2.75
407 408 3.273434 CATGTGGACGACAATGGAGATT 58.727 45.455 0.00 0.00 38.36 2.40
408 409 2.972625 TGTGGACGACAATGGAGATTC 58.027 47.619 0.00 0.00 0.00 2.52
409 410 1.927174 GTGGACGACAATGGAGATTCG 59.073 52.381 0.00 0.00 0.00 3.34
410 411 0.931005 GGACGACAATGGAGATTCGC 59.069 55.000 0.00 0.00 0.00 4.70
411 412 0.931005 GACGACAATGGAGATTCGCC 59.069 55.000 0.00 0.00 0.00 5.54
412 413 0.806102 ACGACAATGGAGATTCGCCG 60.806 55.000 1.81 0.00 0.00 6.46
413 414 1.643832 GACAATGGAGATTCGCCGC 59.356 57.895 1.81 0.00 0.00 6.53
414 415 2.094126 GACAATGGAGATTCGCCGCG 62.094 60.000 6.39 6.39 0.00 6.46
415 416 3.272334 AATGGAGATTCGCCGCGC 61.272 61.111 8.21 0.00 0.00 6.86
429 430 3.524606 GCGCCCGGCAGTAGACTA 61.525 66.667 10.77 0.00 42.87 2.59
430 431 2.722487 CGCCCGGCAGTAGACTAG 59.278 66.667 10.77 0.00 0.00 2.57
431 432 2.417936 GCCCGGCAGTAGACTAGC 59.582 66.667 3.91 0.00 0.00 3.42
432 433 2.423898 GCCCGGCAGTAGACTAGCA 61.424 63.158 3.91 0.00 0.00 3.49
433 434 1.956629 GCCCGGCAGTAGACTAGCAA 61.957 60.000 3.91 0.00 0.00 3.91
434 435 0.103208 CCCGGCAGTAGACTAGCAAG 59.897 60.000 0.00 0.00 0.00 4.01
435 436 0.818296 CCGGCAGTAGACTAGCAAGT 59.182 55.000 0.00 0.00 39.21 3.16
436 437 1.204941 CCGGCAGTAGACTAGCAAGTT 59.795 52.381 0.00 0.00 35.56 2.66
437 438 2.263077 CGGCAGTAGACTAGCAAGTTG 58.737 52.381 0.00 0.00 35.56 3.16
438 439 2.003301 GGCAGTAGACTAGCAAGTTGC 58.997 52.381 20.44 20.44 45.46 4.17
439 440 2.003301 GCAGTAGACTAGCAAGTTGCC 58.997 52.381 24.02 8.91 46.52 4.52
440 441 2.263077 CAGTAGACTAGCAAGTTGCCG 58.737 52.381 24.02 17.31 46.52 5.69
441 442 1.000145 GTAGACTAGCAAGTTGCCGC 59.000 55.000 24.02 10.95 46.52 6.53
442 443 0.108329 TAGACTAGCAAGTTGCCGCC 60.108 55.000 24.02 8.48 46.52 6.13
443 444 1.376037 GACTAGCAAGTTGCCGCCT 60.376 57.895 24.02 8.38 46.52 5.52
444 445 1.362406 GACTAGCAAGTTGCCGCCTC 61.362 60.000 24.02 10.00 46.52 4.70
445 446 1.375908 CTAGCAAGTTGCCGCCTCA 60.376 57.895 24.02 2.39 46.52 3.86
446 447 0.955428 CTAGCAAGTTGCCGCCTCAA 60.955 55.000 24.02 1.04 46.52 3.02
447 448 0.955428 TAGCAAGTTGCCGCCTCAAG 60.955 55.000 24.02 0.00 46.52 3.02
448 449 2.256461 CAAGTTGCCGCCTCAAGC 59.744 61.111 0.00 0.00 38.52 4.01
449 450 2.985847 AAGTTGCCGCCTCAAGCC 60.986 61.111 0.00 0.00 38.78 4.35
467 468 2.125431 GGCGCCGGCTGTAAACTA 60.125 61.111 26.68 0.00 39.81 2.24
468 469 2.171725 GGCGCCGGCTGTAAACTAG 61.172 63.158 26.68 6.32 39.81 2.57
469 470 1.447314 GCGCCGGCTGTAAACTAGT 60.447 57.895 26.68 0.00 35.83 2.57
470 471 1.017701 GCGCCGGCTGTAAACTAGTT 61.018 55.000 26.68 1.12 35.83 2.24
471 472 1.435577 CGCCGGCTGTAAACTAGTTT 58.564 50.000 26.68 23.58 36.63 2.66
472 473 1.802365 CGCCGGCTGTAAACTAGTTTT 59.198 47.619 25.07 10.27 34.23 2.43
473 474 2.995258 CGCCGGCTGTAAACTAGTTTTA 59.005 45.455 25.07 13.97 34.23 1.52
474 475 3.619929 CGCCGGCTGTAAACTAGTTTTAT 59.380 43.478 25.07 4.84 32.17 1.40
475 476 4.260091 CGCCGGCTGTAAACTAGTTTTATC 60.260 45.833 25.07 15.83 32.17 1.75
476 477 4.874396 GCCGGCTGTAAACTAGTTTTATCT 59.126 41.667 25.07 4.07 32.17 1.98
477 478 5.353400 GCCGGCTGTAAACTAGTTTTATCTT 59.647 40.000 25.07 3.32 32.17 2.40
478 479 6.536224 GCCGGCTGTAAACTAGTTTTATCTTA 59.464 38.462 25.07 4.19 32.17 2.10
479 480 7.254353 GCCGGCTGTAAACTAGTTTTATCTTAG 60.254 40.741 25.07 14.58 32.17 2.18
480 481 7.254353 CCGGCTGTAAACTAGTTTTATCTTAGC 60.254 40.741 25.07 21.20 32.17 3.09
481 482 7.491696 CGGCTGTAAACTAGTTTTATCTTAGCT 59.508 37.037 25.07 0.32 32.17 3.32
482 483 8.819015 GGCTGTAAACTAGTTTTATCTTAGCTC 58.181 37.037 25.07 14.28 32.17 4.09
483 484 9.367444 GCTGTAAACTAGTTTTATCTTAGCTCA 57.633 33.333 25.07 0.70 32.17 4.26
490 491 9.535878 ACTAGTTTTATCTTAGCTCAGTATTGC 57.464 33.333 0.00 0.00 0.00 3.56
491 492 9.757227 CTAGTTTTATCTTAGCTCAGTATTGCT 57.243 33.333 0.00 0.00 42.67 3.91
493 494 9.454859 AGTTTTATCTTAGCTCAGTATTGCTTT 57.545 29.630 0.00 0.00 40.35 3.51
500 501 9.938280 TCTTAGCTCAGTATTGCTTTTAGTTAA 57.062 29.630 0.00 0.00 40.35 2.01
527 528 8.980143 AATATGTTCAAAATGTAACCCTTTCG 57.020 30.769 0.00 0.00 0.00 3.46
528 529 5.838531 TGTTCAAAATGTAACCCTTTCGT 57.161 34.783 0.00 0.00 0.00 3.85
529 530 5.823353 TGTTCAAAATGTAACCCTTTCGTC 58.177 37.500 0.00 0.00 0.00 4.20
530 531 5.217393 GTTCAAAATGTAACCCTTTCGTCC 58.783 41.667 0.00 0.00 0.00 4.79
531 532 4.462133 TCAAAATGTAACCCTTTCGTCCA 58.538 39.130 0.00 0.00 0.00 4.02
532 533 4.888239 TCAAAATGTAACCCTTTCGTCCAA 59.112 37.500 0.00 0.00 0.00 3.53
533 534 5.536916 TCAAAATGTAACCCTTTCGTCCAAT 59.463 36.000 0.00 0.00 0.00 3.16
534 535 6.041069 TCAAAATGTAACCCTTTCGTCCAATT 59.959 34.615 0.00 0.00 0.00 2.32
535 536 5.385509 AATGTAACCCTTTCGTCCAATTG 57.614 39.130 0.00 0.00 0.00 2.32
536 537 4.088056 TGTAACCCTTTCGTCCAATTGA 57.912 40.909 7.12 0.00 0.00 2.57
537 538 3.816523 TGTAACCCTTTCGTCCAATTGAC 59.183 43.478 7.12 2.60 40.81 3.18
546 547 2.723124 GTCCAATTGACGGTTTGCAT 57.277 45.000 7.12 0.00 33.49 3.96
547 548 2.327568 GTCCAATTGACGGTTTGCATG 58.672 47.619 7.12 0.00 33.49 4.06
548 549 2.030363 GTCCAATTGACGGTTTGCATGA 60.030 45.455 7.12 0.00 33.49 3.07
549 550 2.625314 TCCAATTGACGGTTTGCATGAA 59.375 40.909 7.12 0.00 0.00 2.57
550 551 3.068732 TCCAATTGACGGTTTGCATGAAA 59.931 39.130 7.12 0.00 0.00 2.69
551 552 3.995705 CCAATTGACGGTTTGCATGAAAT 59.004 39.130 7.12 0.00 0.00 2.17
552 553 4.091800 CCAATTGACGGTTTGCATGAAATC 59.908 41.667 7.12 0.00 0.00 2.17
553 554 3.296322 TTGACGGTTTGCATGAAATCC 57.704 42.857 3.62 3.62 0.00 3.01
554 555 2.234143 TGACGGTTTGCATGAAATCCA 58.766 42.857 13.09 0.00 0.00 3.41
555 556 2.824936 TGACGGTTTGCATGAAATCCAT 59.175 40.909 13.09 0.00 35.44 3.41
556 557 3.119531 TGACGGTTTGCATGAAATCCATC 60.120 43.478 13.09 8.24 31.94 3.51
557 558 2.824936 ACGGTTTGCATGAAATCCATCA 59.175 40.909 13.09 0.00 31.94 3.07
558 559 3.448301 ACGGTTTGCATGAAATCCATCAT 59.552 39.130 13.09 0.00 40.64 2.45
576 577 9.976511 ATCCATCATGTTTGTATGAAATTCATC 57.023 29.630 12.23 5.28 40.21 2.92
577 578 8.968969 TCCATCATGTTTGTATGAAATTCATCA 58.031 29.630 12.23 7.72 40.21 3.07
578 579 9.758651 CCATCATGTTTGTATGAAATTCATCAT 57.241 29.630 12.23 6.52 40.21 2.45
594 595 9.748708 AAATTCATCATGTTTATATGAAACCCG 57.251 29.630 9.92 0.00 41.52 5.28
595 596 6.875948 TCATCATGTTTATATGAAACCCGG 57.124 37.500 0.00 0.00 40.21 5.73
596 597 5.240623 TCATCATGTTTATATGAAACCCGGC 59.759 40.000 0.00 0.00 40.21 6.13
597 598 4.787551 TCATGTTTATATGAAACCCGGCT 58.212 39.130 0.00 0.00 34.32 5.52
598 599 4.578516 TCATGTTTATATGAAACCCGGCTG 59.421 41.667 0.00 0.00 34.32 4.85
599 600 3.958018 TGTTTATATGAAACCCGGCTGT 58.042 40.909 0.00 0.00 0.00 4.40
600 601 3.692101 TGTTTATATGAAACCCGGCTGTG 59.308 43.478 0.00 0.00 0.00 3.66
601 602 3.637911 TTATATGAAACCCGGCTGTGT 57.362 42.857 0.00 0.00 0.00 3.72
602 603 2.507407 ATATGAAACCCGGCTGTGTT 57.493 45.000 0.00 0.00 0.00 3.32
603 604 2.279935 TATGAAACCCGGCTGTGTTT 57.720 45.000 5.77 5.77 37.39 2.83
604 605 0.673437 ATGAAACCCGGCTGTGTTTG 59.327 50.000 11.06 0.00 34.97 2.93
605 606 1.299850 GAAACCCGGCTGTGTTTGC 60.300 57.895 11.06 0.00 34.97 3.68
606 607 2.010582 GAAACCCGGCTGTGTTTGCA 62.011 55.000 11.06 0.00 34.97 4.08
607 608 1.398958 AAACCCGGCTGTGTTTGCAT 61.399 50.000 5.25 0.00 33.64 3.96
608 609 0.538516 AACCCGGCTGTGTTTGCATA 60.539 50.000 0.00 0.00 0.00 3.14
609 610 0.538516 ACCCGGCTGTGTTTGCATAA 60.539 50.000 0.00 0.00 0.00 1.90
610 611 0.600557 CCCGGCTGTGTTTGCATAAA 59.399 50.000 0.00 0.00 0.00 1.40
611 612 1.204467 CCCGGCTGTGTTTGCATAAAT 59.796 47.619 0.00 0.00 0.00 1.40
612 613 2.353605 CCCGGCTGTGTTTGCATAAATT 60.354 45.455 0.00 0.00 0.00 1.82
613 614 3.324993 CCGGCTGTGTTTGCATAAATTT 58.675 40.909 0.00 0.00 0.00 1.82
614 615 4.489810 CCGGCTGTGTTTGCATAAATTTA 58.510 39.130 0.00 0.00 0.00 1.40
615 616 4.926238 CCGGCTGTGTTTGCATAAATTTAA 59.074 37.500 1.21 0.00 0.00 1.52
616 617 5.580297 CCGGCTGTGTTTGCATAAATTTAAT 59.420 36.000 1.21 0.00 0.00 1.40
617 618 6.237808 CCGGCTGTGTTTGCATAAATTTAATC 60.238 38.462 1.21 0.00 0.00 1.75
618 619 6.237808 CGGCTGTGTTTGCATAAATTTAATCC 60.238 38.462 1.21 0.00 0.00 3.01
619 620 6.237808 GGCTGTGTTTGCATAAATTTAATCCG 60.238 38.462 1.21 0.00 0.00 4.18
620 621 6.237808 GCTGTGTTTGCATAAATTTAATCCGG 60.238 38.462 1.21 0.00 0.00 5.14
621 622 6.692486 TGTGTTTGCATAAATTTAATCCGGT 58.308 32.000 0.00 0.00 0.00 5.28
622 623 7.155328 TGTGTTTGCATAAATTTAATCCGGTT 58.845 30.769 0.00 0.00 0.00 4.44
623 624 7.116948 TGTGTTTGCATAAATTTAATCCGGTTG 59.883 33.333 0.00 0.00 0.00 3.77
624 625 7.329717 GTGTTTGCATAAATTTAATCCGGTTGA 59.670 33.333 0.00 0.00 0.00 3.18
625 626 8.037758 TGTTTGCATAAATTTAATCCGGTTGAT 58.962 29.630 0.00 0.00 34.22 2.57
626 627 8.878769 GTTTGCATAAATTTAATCCGGTTGATT 58.121 29.630 0.00 0.00 45.64 2.57
627 628 9.442047 TTTGCATAAATTTAATCCGGTTGATTT 57.558 25.926 0.00 9.04 40.92 2.17
639 640 8.980143 AATCCGGTTGATTTATAAAGTGTTTG 57.020 30.769 0.00 0.00 40.92 2.93
640 641 7.747155 TCCGGTTGATTTATAAAGTGTTTGA 57.253 32.000 0.00 0.00 0.00 2.69
641 642 8.167605 TCCGGTTGATTTATAAAGTGTTTGAA 57.832 30.769 0.00 0.00 0.00 2.69
642 643 8.630917 TCCGGTTGATTTATAAAGTGTTTGAAA 58.369 29.630 0.00 0.00 0.00 2.69
643 644 9.250624 CCGGTTGATTTATAAAGTGTTTGAAAA 57.749 29.630 3.94 0.00 0.00 2.29
658 659 9.561069 AGTGTTTGAAAAGTATGAGAATAGTGT 57.439 29.630 0.00 0.00 0.00 3.55
661 662 9.612620 GTTTGAAAAGTATGAGAATAGTGTTGG 57.387 33.333 0.00 0.00 0.00 3.77
662 663 9.567776 TTTGAAAAGTATGAGAATAGTGTTGGA 57.432 29.630 0.00 0.00 0.00 3.53
663 664 9.739276 TTGAAAAGTATGAGAATAGTGTTGGAT 57.261 29.630 0.00 0.00 0.00 3.41
664 665 9.166173 TGAAAAGTATGAGAATAGTGTTGGATG 57.834 33.333 0.00 0.00 0.00 3.51
665 666 8.511604 AAAAGTATGAGAATAGTGTTGGATGG 57.488 34.615 0.00 0.00 0.00 3.51
666 667 5.615289 AGTATGAGAATAGTGTTGGATGGC 58.385 41.667 0.00 0.00 0.00 4.40
667 668 3.998913 TGAGAATAGTGTTGGATGGCA 57.001 42.857 0.00 0.00 0.00 4.92
668 669 3.877559 TGAGAATAGTGTTGGATGGCAG 58.122 45.455 0.00 0.00 0.00 4.85
669 670 3.264193 TGAGAATAGTGTTGGATGGCAGT 59.736 43.478 0.00 0.00 0.00 4.40
670 671 4.263462 TGAGAATAGTGTTGGATGGCAGTT 60.263 41.667 0.00 0.00 0.00 3.16
671 672 4.666512 AGAATAGTGTTGGATGGCAGTTT 58.333 39.130 0.00 0.00 0.00 2.66
672 673 4.460382 AGAATAGTGTTGGATGGCAGTTTG 59.540 41.667 0.00 0.00 0.00 2.93
673 674 0.675633 AGTGTTGGATGGCAGTTTGC 59.324 50.000 0.00 0.00 44.08 3.68
682 683 2.964978 GCAGTTTGCCGCATCCTT 59.035 55.556 0.00 0.00 37.42 3.36
683 684 1.444895 GCAGTTTGCCGCATCCTTG 60.445 57.895 0.00 0.00 37.42 3.61
684 685 1.959085 CAGTTTGCCGCATCCTTGT 59.041 52.632 0.00 0.00 0.00 3.16
685 686 0.109597 CAGTTTGCCGCATCCTTGTC 60.110 55.000 0.00 0.00 0.00 3.18
686 687 1.212751 GTTTGCCGCATCCTTGTCC 59.787 57.895 0.00 0.00 0.00 4.02
687 688 2.331893 TTTGCCGCATCCTTGTCCG 61.332 57.895 0.00 0.00 0.00 4.79
690 691 3.197790 CCGCATCCTTGTCCGCAG 61.198 66.667 0.00 0.00 0.00 5.18
691 692 2.125552 CGCATCCTTGTCCGCAGA 60.126 61.111 0.00 0.00 0.00 4.26
692 693 2.456119 CGCATCCTTGTCCGCAGAC 61.456 63.158 0.00 0.00 43.83 3.51
693 694 1.078848 GCATCCTTGTCCGCAGACT 60.079 57.895 1.05 0.00 43.91 3.24
694 695 1.364626 GCATCCTTGTCCGCAGACTG 61.365 60.000 1.05 0.00 43.91 3.51
695 696 0.742281 CATCCTTGTCCGCAGACTGG 60.742 60.000 4.26 4.23 43.91 4.00
696 697 2.527951 ATCCTTGTCCGCAGACTGGC 62.528 60.000 4.26 0.00 43.91 4.85
697 698 2.743928 CTTGTCCGCAGACTGGCC 60.744 66.667 4.26 0.00 43.91 5.36
698 699 4.329545 TTGTCCGCAGACTGGCCC 62.330 66.667 0.00 0.00 43.91 5.80
700 701 4.459089 GTCCGCAGACTGGCCCTC 62.459 72.222 0.00 0.00 40.10 4.30
703 704 4.803426 CGCAGACTGGCCCTCGTC 62.803 72.222 0.00 4.38 0.00 4.20
704 705 4.459089 GCAGACTGGCCCTCGTCC 62.459 72.222 0.00 0.00 0.00 4.79
705 706 4.135153 CAGACTGGCCCTCGTCCG 62.135 72.222 0.00 0.00 0.00 4.79
724 725 3.386543 CGGAGCGGATGAGGAATTT 57.613 52.632 0.00 0.00 0.00 1.82
725 726 1.668419 CGGAGCGGATGAGGAATTTT 58.332 50.000 0.00 0.00 0.00 1.82
726 727 2.017049 CGGAGCGGATGAGGAATTTTT 58.983 47.619 0.00 0.00 0.00 1.94
751 752 7.861176 TTTTACAGATGACGGTTAAAAATGC 57.139 32.000 0.00 0.00 0.00 3.56
752 753 6.561737 TTACAGATGACGGTTAAAAATGCA 57.438 33.333 0.00 0.00 0.00 3.96
753 754 5.643379 ACAGATGACGGTTAAAAATGCAT 57.357 34.783 0.00 0.00 0.00 3.96
754 755 6.024552 ACAGATGACGGTTAAAAATGCATT 57.975 33.333 5.99 5.99 0.00 3.56
755 756 6.454795 ACAGATGACGGTTAAAAATGCATTT 58.545 32.000 18.99 18.99 0.00 2.32
756 757 7.598278 ACAGATGACGGTTAAAAATGCATTTA 58.402 30.769 24.35 7.82 0.00 1.40
757 758 8.250332 ACAGATGACGGTTAAAAATGCATTTAT 58.750 29.630 24.35 11.05 0.00 1.40
758 759 8.533965 CAGATGACGGTTAAAAATGCATTTATG 58.466 33.333 24.35 12.75 0.00 1.90
759 760 8.250332 AGATGACGGTTAAAAATGCATTTATGT 58.750 29.630 24.35 15.45 0.00 2.29
760 761 7.804614 TGACGGTTAAAAATGCATTTATGTC 57.195 32.000 24.35 21.56 0.00 3.06
761 762 7.371159 TGACGGTTAAAAATGCATTTATGTCA 58.629 30.769 24.35 23.35 33.83 3.58
762 763 7.327275 TGACGGTTAAAAATGCATTTATGTCAC 59.673 33.333 24.35 15.56 32.69 3.67
763 764 6.588373 ACGGTTAAAAATGCATTTATGTCACC 59.412 34.615 24.35 21.28 0.00 4.02
764 765 6.811170 CGGTTAAAAATGCATTTATGTCACCT 59.189 34.615 24.35 4.04 0.00 4.00
765 766 7.330700 CGGTTAAAAATGCATTTATGTCACCTT 59.669 33.333 24.35 14.38 0.00 3.50
766 767 9.646427 GGTTAAAAATGCATTTATGTCACCTTA 57.354 29.630 24.35 13.45 0.00 2.69
770 771 9.723601 AAAAATGCATTTATGTCACCTTATTGT 57.276 25.926 24.35 0.72 0.00 2.71
772 773 9.801873 AAATGCATTTATGTCACCTTATTGTAC 57.198 29.630 22.95 0.00 0.00 2.90
773 774 8.752005 ATGCATTTATGTCACCTTATTGTACT 57.248 30.769 0.00 0.00 0.00 2.73
774 775 8.574251 TGCATTTATGTCACCTTATTGTACTT 57.426 30.769 0.00 0.00 0.00 2.24
775 776 8.458052 TGCATTTATGTCACCTTATTGTACTTG 58.542 33.333 0.00 0.00 0.00 3.16
776 777 7.432252 GCATTTATGTCACCTTATTGTACTTGC 59.568 37.037 0.00 0.00 0.00 4.01
777 778 8.677300 CATTTATGTCACCTTATTGTACTTGCT 58.323 33.333 0.00 0.00 0.00 3.91
778 779 7.609760 TTATGTCACCTTATTGTACTTGCTG 57.390 36.000 0.00 0.00 0.00 4.41
779 780 4.968259 TGTCACCTTATTGTACTTGCTGT 58.032 39.130 0.00 0.00 0.00 4.40
780 781 4.994852 TGTCACCTTATTGTACTTGCTGTC 59.005 41.667 0.00 0.00 0.00 3.51
781 782 4.994852 GTCACCTTATTGTACTTGCTGTCA 59.005 41.667 0.00 0.00 0.00 3.58
782 783 5.468746 GTCACCTTATTGTACTTGCTGTCAA 59.531 40.000 0.00 0.00 0.00 3.18
806 807 0.748450 CGTAGGGAATCGTTGGCCTA 59.252 55.000 3.32 0.00 0.00 3.93
826 827 3.876274 AGACTTTTGCATCTCGCTAGA 57.124 42.857 0.00 0.00 43.06 2.43
827 828 3.779759 AGACTTTTGCATCTCGCTAGAG 58.220 45.455 0.00 0.00 45.69 2.43
853 856 4.594920 AGGATGAATTCATGTATCCCGAGT 59.405 41.667 25.37 2.92 39.91 4.18
876 882 5.537300 TCATAACTCAAGTCATCCTAGCC 57.463 43.478 0.00 0.00 0.00 3.93
895 916 7.180051 TCCTAGCCCAACAAATTTCACATAAAT 59.820 33.333 0.00 0.00 0.00 1.40
1386 1435 2.125512 GTGCTCGACCTCGCCAAT 60.126 61.111 0.00 0.00 39.60 3.16
1413 1462 1.956170 CGTGAGCGTCAACCAGCTT 60.956 57.895 0.00 0.00 44.69 3.74
1437 1486 1.668294 CACTGCTTGGGTCGACTCT 59.332 57.895 17.97 0.00 0.00 3.24
2358 2431 1.302511 GAGCAAGAACCCGAGGCAA 60.303 57.895 0.00 0.00 0.00 4.52
2463 2539 1.134901 CGAGCAGTACTTCGCGAGT 59.865 57.895 12.83 12.43 42.55 4.18
2508 2584 3.845259 GCGGCCGTGGATCCTACA 61.845 66.667 28.70 0.00 0.00 2.74
2538 2614 0.391661 GAAACGAGCAGAGCATCCCA 60.392 55.000 0.00 0.00 33.66 4.37
2696 2772 0.039256 TGCATGAAAGCAACGGAAGC 60.039 50.000 0.00 0.00 42.46 3.86
2732 2811 5.120674 GCAACCAAAATTGTAATTCTGCCTC 59.879 40.000 0.00 0.00 31.83 4.70
2817 2896 3.310227 CAGCATGTGCAATGTTTGTTTGT 59.690 39.130 7.83 0.00 45.16 2.83
2818 2897 3.940221 AGCATGTGCAATGTTTGTTTGTT 59.060 34.783 7.83 0.00 45.16 2.83
2819 2898 4.395542 AGCATGTGCAATGTTTGTTTGTTT 59.604 33.333 7.83 0.00 45.16 2.83
2820 2899 4.496183 GCATGTGCAATGTTTGTTTGTTTG 59.504 37.500 0.00 0.00 41.59 2.93
2849 2929 3.883489 GTGAACCTTTGCCTCTTTGTACT 59.117 43.478 0.00 0.00 0.00 2.73
2900 2980 5.180304 TGCGTGCAACTTGAAGTATTTATGA 59.820 36.000 0.00 0.00 31.75 2.15
2901 2981 6.128035 TGCGTGCAACTTGAAGTATTTATGAT 60.128 34.615 0.00 0.00 31.75 2.45
2902 2982 6.195244 GCGTGCAACTTGAAGTATTTATGATG 59.805 38.462 0.00 0.00 31.75 3.07
2917 2997 2.112380 TGATGCATTTCTTCTGCGGA 57.888 45.000 0.00 0.00 42.62 5.54
2948 3028 7.889589 TTTATGCATACTAGATGATGTTCCG 57.110 36.000 5.74 0.00 0.00 4.30
2949 3029 3.653344 TGCATACTAGATGATGTTCCGC 58.347 45.455 0.00 0.00 0.00 5.54
3018 3269 8.303156 ACTAAATGCAATGCAAATGTAACAGTA 58.697 29.630 13.45 0.00 43.62 2.74
3088 3504 2.767505 GGGTATGCTTCAAGTATCCGG 58.232 52.381 0.00 0.00 0.00 5.14
3105 3529 7.817641 AGTATCCGGCACATATATCGTATATG 58.182 38.462 16.69 16.69 37.84 1.78
3106 3530 5.447624 TCCGGCACATATATCGTATATGG 57.552 43.478 19.83 13.61 36.56 2.74
3108 3532 5.595133 TCCGGCACATATATCGTATATGGAA 59.405 40.000 19.83 5.46 36.56 3.53
3112 3536 8.826710 CGGCACATATATCGTATATGGAAAAAT 58.173 33.333 19.83 4.93 36.56 1.82
3177 3601 6.975196 TTGCTAATATGGTATGGTTGCATT 57.025 33.333 0.00 0.00 0.00 3.56
3183 3607 9.897744 CTAATATGGTATGGTTGCATTGTTAAG 57.102 33.333 0.00 0.00 0.00 1.85
3203 5502 9.838975 TGTTAAGTTAATGCATACAAATCACAG 57.161 29.630 0.00 0.00 0.00 3.66
3254 5553 1.005294 GCGTGGTTGCATGCTTTGAG 61.005 55.000 20.33 7.22 34.47 3.02
3268 5567 5.801531 TGCTTTGAGAAGTGAGGTAGTTA 57.198 39.130 0.00 0.00 35.25 2.24
3274 5573 3.436243 AGAAGTGAGGTAGTTAGCTGCT 58.564 45.455 7.57 7.57 33.58 4.24
3275 5574 3.194542 AGAAGTGAGGTAGTTAGCTGCTG 59.805 47.826 13.43 0.00 33.58 4.41
3320 5619 1.303309 GCGATTGGTGAATGAGAGGG 58.697 55.000 0.00 0.00 0.00 4.30
3345 5644 0.042731 TCTCGACCATTTCCCCTCCT 59.957 55.000 0.00 0.00 0.00 3.69
3417 5716 2.456840 CCCTCCTCCCACCTCCTT 59.543 66.667 0.00 0.00 0.00 3.36
3468 5767 1.944177 CAGGACCTCTTCTTCCCTCA 58.056 55.000 0.00 0.00 31.51 3.86
3477 5776 0.768221 TTCTTCCCTCAGCTGGTGGT 60.768 55.000 15.13 0.00 0.00 4.16
3551 5850 2.280592 GACGACGCAACCAAGGGT 60.281 61.111 0.00 0.00 37.65 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.513897 GCACGGGAGGCATGGTAC 60.514 66.667 0.00 0.00 0.00 3.34
5 6 4.415150 CACAGGCACGGGAGGCAT 62.415 66.667 0.00 0.00 36.37 4.40
8 9 4.394712 GGTCACAGGCACGGGAGG 62.395 72.222 0.00 0.00 0.00 4.30
9 10 4.742201 CGGTCACAGGCACGGGAG 62.742 72.222 0.00 0.00 0.00 4.30
18 19 4.457496 AGGATGGCGCGGTCACAG 62.457 66.667 8.83 0.00 0.00 3.66
19 20 4.451150 GAGGATGGCGCGGTCACA 62.451 66.667 8.83 0.00 0.00 3.58
25 26 4.812476 TTGACGGAGGATGGCGCG 62.812 66.667 0.00 0.00 0.00 6.86
26 27 2.038269 TTTTGACGGAGGATGGCGC 61.038 57.895 0.00 0.00 0.00 6.53
27 28 1.794222 GTTTTGACGGAGGATGGCG 59.206 57.895 0.00 0.00 0.00 5.69
28 29 1.794222 CGTTTTGACGGAGGATGGC 59.206 57.895 0.00 0.00 0.00 4.40
29 30 1.794222 GCGTTTTGACGGAGGATGG 59.206 57.895 0.93 0.00 0.00 3.51
30 31 1.419922 CGCGTTTTGACGGAGGATG 59.580 57.895 0.00 0.00 0.00 3.51
31 32 2.388232 GCGCGTTTTGACGGAGGAT 61.388 57.895 8.43 0.00 0.00 3.24
32 33 3.039588 GCGCGTTTTGACGGAGGA 61.040 61.111 8.43 0.00 0.00 3.71
33 34 1.355796 TATGCGCGTTTTGACGGAGG 61.356 55.000 7.78 0.00 31.67 4.30
34 35 0.025001 CTATGCGCGTTTTGACGGAG 59.975 55.000 7.78 0.00 31.67 4.63
35 36 1.962092 GCTATGCGCGTTTTGACGGA 61.962 55.000 7.78 0.00 0.00 4.69
36 37 1.580132 GCTATGCGCGTTTTGACGG 60.580 57.895 7.78 0.00 0.00 4.79
37 38 1.580132 GGCTATGCGCGTTTTGACG 60.580 57.895 7.78 0.00 40.44 4.35
38 39 0.098728 ATGGCTATGCGCGTTTTGAC 59.901 50.000 7.78 1.19 40.44 3.18
39 40 0.098552 CATGGCTATGCGCGTTTTGA 59.901 50.000 7.78 0.00 40.44 2.69
40 41 2.569259 CATGGCTATGCGCGTTTTG 58.431 52.632 7.78 0.00 40.44 2.44
49 50 2.324215 CCGACAAGGCATGGCTATG 58.676 57.895 23.63 22.27 33.51 2.23
50 51 4.885426 CCGACAAGGCATGGCTAT 57.115 55.556 23.63 14.01 33.51 2.97
59 60 2.072298 CTTCTTTCTCTGCCGACAAGG 58.928 52.381 0.00 0.00 44.97 3.61
60 61 1.462670 GCTTCTTTCTCTGCCGACAAG 59.537 52.381 0.00 0.00 0.00 3.16
61 62 1.512926 GCTTCTTTCTCTGCCGACAA 58.487 50.000 0.00 0.00 0.00 3.18
62 63 0.320771 GGCTTCTTTCTCTGCCGACA 60.321 55.000 0.00 0.00 35.79 4.35
63 64 2.461416 GGCTTCTTTCTCTGCCGAC 58.539 57.895 0.00 0.00 35.79 4.79
66 67 0.036858 AGTCGGCTTCTTTCTCTGCC 60.037 55.000 0.00 0.00 41.76 4.85
67 68 1.074752 CAGTCGGCTTCTTTCTCTGC 58.925 55.000 0.00 0.00 0.00 4.26
68 69 1.074752 GCAGTCGGCTTCTTTCTCTG 58.925 55.000 0.00 0.00 40.25 3.35
69 70 0.389166 CGCAGTCGGCTTCTTTCTCT 60.389 55.000 0.00 0.00 41.67 3.10
70 71 1.960994 GCGCAGTCGGCTTCTTTCTC 61.961 60.000 0.30 0.00 41.67 2.87
71 72 2.029844 GCGCAGTCGGCTTCTTTCT 61.030 57.895 0.30 0.00 41.67 2.52
72 73 2.233007 CTGCGCAGTCGGCTTCTTTC 62.233 60.000 29.24 0.00 41.67 2.62
73 74 2.280797 TGCGCAGTCGGCTTCTTT 60.281 55.556 5.66 0.00 41.67 2.52
74 75 2.740055 CTGCGCAGTCGGCTTCTT 60.740 61.111 29.24 0.00 41.67 2.52
75 76 3.639541 CTCTGCGCAGTCGGCTTCT 62.640 63.158 34.70 0.00 41.67 2.85
76 77 2.897641 ATCTCTGCGCAGTCGGCTTC 62.898 60.000 34.70 0.00 41.67 3.86
77 78 2.897641 GATCTCTGCGCAGTCGGCTT 62.898 60.000 34.70 15.95 41.67 4.35
78 79 3.423162 GATCTCTGCGCAGTCGGCT 62.423 63.158 34.70 18.21 41.67 5.52
79 80 2.959071 GATCTCTGCGCAGTCGGC 60.959 66.667 34.70 19.74 39.90 5.54
80 81 2.653448 CGATCTCTGCGCAGTCGG 60.653 66.667 34.70 24.59 35.95 4.79
81 82 1.936880 GTCGATCTCTGCGCAGTCG 60.937 63.158 34.70 32.89 39.07 4.18
82 83 1.936880 CGTCGATCTCTGCGCAGTC 60.937 63.158 34.70 24.16 0.00 3.51
83 84 2.101185 CGTCGATCTCTGCGCAGT 59.899 61.111 34.70 18.19 0.00 4.40
84 85 1.653835 CTCGTCGATCTCTGCGCAG 60.654 63.158 31.53 31.53 0.00 5.18
85 86 2.311080 GACTCGTCGATCTCTGCGCA 62.311 60.000 10.98 10.98 0.00 6.09
86 87 1.652930 GACTCGTCGATCTCTGCGC 60.653 63.158 0.00 0.00 0.00 6.09
87 88 4.580580 GACTCGTCGATCTCTGCG 57.419 61.111 0.00 0.00 0.00 5.18
97 98 2.102553 GCTAGCCACCGACTCGTC 59.897 66.667 2.29 0.00 0.00 4.20
98 99 2.675423 TGCTAGCCACCGACTCGT 60.675 61.111 13.29 0.00 0.00 4.18
99 100 2.202623 GTGCTAGCCACCGACTCG 60.203 66.667 13.29 0.00 38.55 4.18
100 101 2.202623 CGTGCTAGCCACCGACTC 60.203 66.667 13.29 0.00 41.53 3.36
101 102 2.488087 GAACGTGCTAGCCACCGACT 62.488 60.000 20.80 10.19 41.53 4.18
102 103 2.048503 AACGTGCTAGCCACCGAC 60.049 61.111 20.80 8.49 41.53 4.79
103 104 2.260434 GAACGTGCTAGCCACCGA 59.740 61.111 20.80 0.00 41.53 4.69
104 105 3.179265 CGAACGTGCTAGCCACCG 61.179 66.667 13.29 14.08 41.53 4.94
105 106 3.488090 GCGAACGTGCTAGCCACC 61.488 66.667 13.29 0.00 41.53 4.61
106 107 3.838795 CGCGAACGTGCTAGCCAC 61.839 66.667 13.29 9.58 41.15 5.01
117 118 0.942410 TGTTGGCAGTAGACGCGAAC 60.942 55.000 15.93 8.11 45.13 3.95
118 119 0.037697 ATGTTGGCAGTAGACGCGAA 60.038 50.000 15.93 0.00 0.00 4.70
119 120 0.457853 GATGTTGGCAGTAGACGCGA 60.458 55.000 15.93 0.00 0.00 5.87
120 121 0.735978 TGATGTTGGCAGTAGACGCG 60.736 55.000 3.53 3.53 0.00 6.01
121 122 1.394917 CTTGATGTTGGCAGTAGACGC 59.605 52.381 0.00 0.00 0.00 5.19
122 123 2.002586 CCTTGATGTTGGCAGTAGACG 58.997 52.381 0.00 0.00 0.00 4.18
123 124 2.027192 TCCCTTGATGTTGGCAGTAGAC 60.027 50.000 0.00 0.00 0.00 2.59
124 125 2.265367 TCCCTTGATGTTGGCAGTAGA 58.735 47.619 0.00 0.00 0.00 2.59
125 126 2.787473 TCCCTTGATGTTGGCAGTAG 57.213 50.000 0.00 0.00 0.00 2.57
126 127 3.181434 ACTTTCCCTTGATGTTGGCAGTA 60.181 43.478 0.00 0.00 0.00 2.74
127 128 2.242043 CTTTCCCTTGATGTTGGCAGT 58.758 47.619 0.00 0.00 0.00 4.40
128 129 2.242043 ACTTTCCCTTGATGTTGGCAG 58.758 47.619 0.00 0.00 0.00 4.85
129 130 2.380064 ACTTTCCCTTGATGTTGGCA 57.620 45.000 0.00 0.00 0.00 4.92
130 131 3.686016 TCTACTTTCCCTTGATGTTGGC 58.314 45.455 0.00 0.00 0.00 4.52
131 132 5.070001 TGTTCTACTTTCCCTTGATGTTGG 58.930 41.667 0.00 0.00 0.00 3.77
132 133 6.349611 CCATGTTCTACTTTCCCTTGATGTTG 60.350 42.308 0.00 0.00 0.00 3.33
133 134 5.711976 CCATGTTCTACTTTCCCTTGATGTT 59.288 40.000 0.00 0.00 0.00 2.71
134 135 5.256474 CCATGTTCTACTTTCCCTTGATGT 58.744 41.667 0.00 0.00 0.00 3.06
135 136 4.641989 CCCATGTTCTACTTTCCCTTGATG 59.358 45.833 0.00 0.00 0.00 3.07
136 137 4.540099 TCCCATGTTCTACTTTCCCTTGAT 59.460 41.667 0.00 0.00 0.00 2.57
137 138 3.913799 TCCCATGTTCTACTTTCCCTTGA 59.086 43.478 0.00 0.00 0.00 3.02
138 139 4.265073 CTCCCATGTTCTACTTTCCCTTG 58.735 47.826 0.00 0.00 0.00 3.61
139 140 3.267031 CCTCCCATGTTCTACTTTCCCTT 59.733 47.826 0.00 0.00 0.00 3.95
140 141 2.846827 CCTCCCATGTTCTACTTTCCCT 59.153 50.000 0.00 0.00 0.00 4.20
141 142 2.684038 GCCTCCCATGTTCTACTTTCCC 60.684 54.545 0.00 0.00 0.00 3.97
142 143 2.644676 GCCTCCCATGTTCTACTTTCC 58.355 52.381 0.00 0.00 0.00 3.13
143 144 2.644676 GGCCTCCCATGTTCTACTTTC 58.355 52.381 0.00 0.00 0.00 2.62
144 145 1.065418 CGGCCTCCCATGTTCTACTTT 60.065 52.381 0.00 0.00 0.00 2.66
145 146 0.541863 CGGCCTCCCATGTTCTACTT 59.458 55.000 0.00 0.00 0.00 2.24
146 147 0.617820 ACGGCCTCCCATGTTCTACT 60.618 55.000 0.00 0.00 0.00 2.57
147 148 0.179081 GACGGCCTCCCATGTTCTAC 60.179 60.000 0.00 0.00 0.00 2.59
148 149 1.672854 CGACGGCCTCCCATGTTCTA 61.673 60.000 0.00 0.00 0.00 2.10
149 150 2.990479 GACGGCCTCCCATGTTCT 59.010 61.111 0.00 0.00 0.00 3.01
150 151 2.511600 CGACGGCCTCCCATGTTC 60.512 66.667 0.00 0.00 0.00 3.18
151 152 4.778143 GCGACGGCCTCCCATGTT 62.778 66.667 0.00 0.00 0.00 2.71
185 186 4.683334 GTTGTGCAAGCCGGCGAC 62.683 66.667 23.20 16.67 36.28 5.19
190 191 4.326766 CACCGGTTGTGCAAGCCG 62.327 66.667 2.97 15.30 44.55 5.52
191 192 2.904866 TCACCGGTTGTGCAAGCC 60.905 61.111 2.97 0.00 45.03 4.35
192 193 1.724582 AAGTCACCGGTTGTGCAAGC 61.725 55.000 2.97 4.23 45.03 4.01
193 194 0.029300 CAAGTCACCGGTTGTGCAAG 59.971 55.000 2.97 0.00 45.03 4.01
194 195 1.999071 GCAAGTCACCGGTTGTGCAA 61.999 55.000 18.76 0.00 45.03 4.08
195 196 2.477176 GCAAGTCACCGGTTGTGCA 61.477 57.895 18.76 0.00 45.03 4.57
196 197 2.331451 GCAAGTCACCGGTTGTGC 59.669 61.111 2.97 8.70 45.03 4.57
197 198 2.551912 GGGCAAGTCACCGGTTGTG 61.552 63.158 2.97 1.21 46.88 3.33
198 199 2.203294 GGGCAAGTCACCGGTTGT 60.203 61.111 2.97 0.00 0.00 3.32
199 200 3.353836 CGGGCAAGTCACCGGTTG 61.354 66.667 2.97 0.75 46.08 3.77
204 205 1.228154 AAGAACCGGGCAAGTCACC 60.228 57.895 6.32 0.00 0.00 4.02
205 206 0.534203 TCAAGAACCGGGCAAGTCAC 60.534 55.000 6.32 0.00 0.00 3.67
206 207 0.250295 CTCAAGAACCGGGCAAGTCA 60.250 55.000 6.32 0.00 0.00 3.41
207 208 1.578206 GCTCAAGAACCGGGCAAGTC 61.578 60.000 6.32 0.00 0.00 3.01
208 209 1.600916 GCTCAAGAACCGGGCAAGT 60.601 57.895 6.32 0.00 0.00 3.16
209 210 2.680913 CGCTCAAGAACCGGGCAAG 61.681 63.158 6.32 0.00 0.00 4.01
210 211 2.668212 CGCTCAAGAACCGGGCAA 60.668 61.111 6.32 0.00 0.00 4.52
213 214 3.121030 CTGCGCTCAAGAACCGGG 61.121 66.667 9.73 0.00 0.00 5.73
214 215 3.121030 CCTGCGCTCAAGAACCGG 61.121 66.667 9.73 0.00 0.00 5.28
215 216 3.793144 GCCTGCGCTCAAGAACCG 61.793 66.667 9.73 0.00 0.00 4.44
216 217 3.435186 GGCCTGCGCTCAAGAACC 61.435 66.667 9.73 0.00 34.44 3.62
217 218 1.986575 GATGGCCTGCGCTCAAGAAC 61.987 60.000 9.73 0.00 34.44 3.01
218 219 1.746615 GATGGCCTGCGCTCAAGAA 60.747 57.895 9.73 0.00 34.44 2.52
219 220 2.124983 GATGGCCTGCGCTCAAGA 60.125 61.111 9.73 0.00 34.44 3.02
220 221 3.570638 CGATGGCCTGCGCTCAAG 61.571 66.667 9.73 0.00 34.44 3.02
221 222 4.393155 ACGATGGCCTGCGCTCAA 62.393 61.111 9.73 0.00 34.44 3.02
222 223 4.819761 GACGATGGCCTGCGCTCA 62.820 66.667 9.73 2.10 34.44 4.26
242 243 1.936767 TTATGGAGCCAAGGCAGGGG 61.937 60.000 14.40 0.00 44.88 4.79
243 244 0.033208 TTTATGGAGCCAAGGCAGGG 60.033 55.000 14.40 0.00 44.88 4.45
244 245 1.753073 CTTTTATGGAGCCAAGGCAGG 59.247 52.381 14.40 0.00 44.88 4.85
245 246 1.135721 GCTTTTATGGAGCCAAGGCAG 59.864 52.381 14.40 0.13 44.88 4.85
246 247 1.185315 GCTTTTATGGAGCCAAGGCA 58.815 50.000 14.40 0.00 44.88 4.75
247 248 0.101219 CGCTTTTATGGAGCCAAGGC 59.899 55.000 2.02 2.02 36.81 4.35
248 249 0.740737 CCGCTTTTATGGAGCCAAGG 59.259 55.000 0.00 0.00 36.81 3.61
249 250 1.672881 CTCCGCTTTTATGGAGCCAAG 59.327 52.381 0.00 0.00 44.83 3.61
250 251 1.750193 CTCCGCTTTTATGGAGCCAA 58.250 50.000 0.00 0.00 44.83 4.52
251 252 3.476740 CTCCGCTTTTATGGAGCCA 57.523 52.632 0.00 0.00 44.83 4.75
255 256 4.532490 CGCCTCCGCTTTTATGGA 57.468 55.556 0.00 0.00 0.00 3.41
291 292 2.745884 CCGCCGGCTGATGTTTCA 60.746 61.111 26.68 0.00 0.00 2.69
292 293 2.253414 GAACCGCCGGCTGATGTTTC 62.253 60.000 25.71 13.49 0.00 2.78
293 294 2.282180 AACCGCCGGCTGATGTTT 60.282 55.556 25.71 5.17 0.00 2.83
294 295 2.746277 GAACCGCCGGCTGATGTT 60.746 61.111 25.71 20.59 0.00 2.71
295 296 4.778143 GGAACCGCCGGCTGATGT 62.778 66.667 25.71 13.17 0.00 3.06
296 297 4.776322 TGGAACCGCCGGCTGATG 62.776 66.667 25.71 12.49 40.66 3.07
297 298 4.778143 GTGGAACCGCCGGCTGAT 62.778 66.667 25.71 13.41 40.66 2.90
307 308 2.047179 GCTCACCGGAGTGGAACC 60.047 66.667 9.46 0.00 44.64 3.62
308 309 2.432628 CGCTCACCGGAGTGGAAC 60.433 66.667 9.46 0.00 45.78 3.62
313 314 4.003788 CCCAACGCTCACCGGAGT 62.004 66.667 9.46 0.00 43.37 3.85
314 315 2.725203 TTTCCCAACGCTCACCGGAG 62.725 60.000 9.46 0.00 44.33 4.63
315 316 2.725203 CTTTCCCAACGCTCACCGGA 62.725 60.000 9.46 0.00 42.52 5.14
316 317 2.281208 TTTCCCAACGCTCACCGG 60.281 61.111 0.00 0.00 42.52 5.28
317 318 1.597027 ACTTTCCCAACGCTCACCG 60.597 57.895 0.00 0.00 44.21 4.94
318 319 0.534203 TCACTTTCCCAACGCTCACC 60.534 55.000 0.00 0.00 0.00 4.02
319 320 0.868406 CTCACTTTCCCAACGCTCAC 59.132 55.000 0.00 0.00 0.00 3.51
320 321 0.884704 GCTCACTTTCCCAACGCTCA 60.885 55.000 0.00 0.00 0.00 4.26
321 322 1.578206 GGCTCACTTTCCCAACGCTC 61.578 60.000 0.00 0.00 0.00 5.03
322 323 1.600916 GGCTCACTTTCCCAACGCT 60.601 57.895 0.00 0.00 0.00 5.07
323 324 2.954611 GGCTCACTTTCCCAACGC 59.045 61.111 0.00 0.00 0.00 4.84
324 325 2.966309 GCGGCTCACTTTCCCAACG 61.966 63.158 0.00 0.00 0.00 4.10
325 326 2.626780 GGCGGCTCACTTTCCCAAC 61.627 63.158 0.00 0.00 0.00 3.77
326 327 2.282180 GGCGGCTCACTTTCCCAA 60.282 61.111 0.00 0.00 0.00 4.12
327 328 4.697756 CGGCGGCTCACTTTCCCA 62.698 66.667 7.61 0.00 0.00 4.37
328 329 4.699522 ACGGCGGCTCACTTTCCC 62.700 66.667 13.24 0.00 0.00 3.97
329 330 2.258726 AAACGGCGGCTCACTTTCC 61.259 57.895 13.24 0.00 0.00 3.13
330 331 1.082104 CAAACGGCGGCTCACTTTC 60.082 57.895 13.24 0.00 0.00 2.62
331 332 2.551912 CCAAACGGCGGCTCACTTT 61.552 57.895 13.24 0.00 0.00 2.66
332 333 2.978010 CCAAACGGCGGCTCACTT 60.978 61.111 13.24 0.00 0.00 3.16
342 343 2.290641 GGTATATGCTTCAGCCAAACGG 59.709 50.000 0.00 0.00 41.18 4.44
343 344 3.206150 AGGTATATGCTTCAGCCAAACG 58.794 45.455 0.00 0.00 41.18 3.60
344 345 3.565902 GGAGGTATATGCTTCAGCCAAAC 59.434 47.826 5.34 0.00 41.18 2.93
345 346 3.744214 CGGAGGTATATGCTTCAGCCAAA 60.744 47.826 5.34 0.00 41.18 3.28
346 347 2.224281 CGGAGGTATATGCTTCAGCCAA 60.224 50.000 5.34 0.00 41.18 4.52
347 348 1.344438 CGGAGGTATATGCTTCAGCCA 59.656 52.381 5.34 0.00 41.18 4.75
348 349 2.086054 CGGAGGTATATGCTTCAGCC 57.914 55.000 5.34 0.00 41.18 4.85
363 364 4.742201 CAGTCGTGTGCCCCGGAG 62.742 72.222 0.73 0.00 0.00 4.63
368 369 3.986006 TCCGACAGTCGTGTGCCC 61.986 66.667 21.34 0.00 38.40 5.36
369 370 2.733593 GTCCGACAGTCGTGTGCC 60.734 66.667 21.34 1.04 38.40 5.01
370 371 1.372997 ATGTCCGACAGTCGTGTGC 60.373 57.895 21.34 8.87 38.40 4.57
371 372 0.318699 ACATGTCCGACAGTCGTGTG 60.319 55.000 21.34 15.13 38.40 3.82
372 373 0.318699 CACATGTCCGACAGTCGTGT 60.319 55.000 21.34 15.47 38.40 4.49
373 374 1.008875 CCACATGTCCGACAGTCGTG 61.009 60.000 21.34 14.84 38.40 4.35
374 375 1.176619 TCCACATGTCCGACAGTCGT 61.177 55.000 21.34 0.00 38.40 4.34
375 376 0.732880 GTCCACATGTCCGACAGTCG 60.733 60.000 16.50 16.50 40.07 4.18
376 377 0.732880 CGTCCACATGTCCGACAGTC 60.733 60.000 18.23 0.00 0.00 3.51
377 378 1.176619 TCGTCCACATGTCCGACAGT 61.177 55.000 18.23 2.96 0.00 3.55
378 379 0.732880 GTCGTCCACATGTCCGACAG 60.733 60.000 25.56 16.48 46.53 3.51
379 380 1.287815 GTCGTCCACATGTCCGACA 59.712 57.895 25.56 3.10 46.53 4.35
380 381 4.164252 GTCGTCCACATGTCCGAC 57.836 61.111 20.01 20.01 42.22 4.79
381 382 0.606096 ATTGTCGTCCACATGTCCGA 59.394 50.000 0.00 1.10 33.90 4.55
382 383 0.721154 CATTGTCGTCCACATGTCCG 59.279 55.000 0.00 0.00 33.90 4.79
383 384 1.086696 CCATTGTCGTCCACATGTCC 58.913 55.000 0.00 0.00 33.90 4.02
384 385 2.002586 CTCCATTGTCGTCCACATGTC 58.997 52.381 0.00 0.00 33.90 3.06
385 386 1.623311 TCTCCATTGTCGTCCACATGT 59.377 47.619 0.00 0.00 33.90 3.21
386 387 2.385013 TCTCCATTGTCGTCCACATG 57.615 50.000 0.00 0.00 33.90 3.21
387 388 3.535561 GAATCTCCATTGTCGTCCACAT 58.464 45.455 0.00 0.00 33.90 3.21
388 389 2.673893 CGAATCTCCATTGTCGTCCACA 60.674 50.000 0.00 0.00 0.00 4.17
389 390 1.927174 CGAATCTCCATTGTCGTCCAC 59.073 52.381 0.00 0.00 0.00 4.02
390 391 1.739035 GCGAATCTCCATTGTCGTCCA 60.739 52.381 0.00 0.00 35.93 4.02
391 392 0.931005 GCGAATCTCCATTGTCGTCC 59.069 55.000 0.00 0.00 35.93 4.79
392 393 0.931005 GGCGAATCTCCATTGTCGTC 59.069 55.000 0.00 0.00 35.93 4.20
393 394 0.806102 CGGCGAATCTCCATTGTCGT 60.806 55.000 0.00 0.00 35.93 4.34
394 395 1.927210 CGGCGAATCTCCATTGTCG 59.073 57.895 0.00 0.00 36.59 4.35
395 396 1.643832 GCGGCGAATCTCCATTGTC 59.356 57.895 12.98 0.00 0.00 3.18
396 397 2.173669 CGCGGCGAATCTCCATTGT 61.174 57.895 19.16 0.00 0.00 2.71
397 398 2.628106 CGCGGCGAATCTCCATTG 59.372 61.111 19.16 0.00 0.00 2.82
398 399 3.272334 GCGCGGCGAATCTCCATT 61.272 61.111 28.54 0.00 0.00 3.16
412 413 3.486252 CTAGTCTACTGCCGGGCGC 62.486 68.421 15.40 0.00 38.31 6.53
413 414 2.722487 CTAGTCTACTGCCGGGCG 59.278 66.667 15.40 11.70 0.00 6.13
414 415 1.956629 TTGCTAGTCTACTGCCGGGC 61.957 60.000 13.32 13.32 0.00 6.13
415 416 0.103208 CTTGCTAGTCTACTGCCGGG 59.897 60.000 2.18 0.00 0.00 5.73
416 417 0.818296 ACTTGCTAGTCTACTGCCGG 59.182 55.000 0.00 0.00 0.00 6.13
417 418 2.263077 CAACTTGCTAGTCTACTGCCG 58.737 52.381 0.07 0.00 31.99 5.69
418 419 2.003301 GCAACTTGCTAGTCTACTGCC 58.997 52.381 10.42 0.00 40.96 4.85
419 420 2.003301 GGCAACTTGCTAGTCTACTGC 58.997 52.381 13.43 12.44 44.28 4.40
420 421 2.263077 CGGCAACTTGCTAGTCTACTG 58.737 52.381 13.43 0.00 44.28 2.74
421 422 1.404315 GCGGCAACTTGCTAGTCTACT 60.404 52.381 13.43 0.00 44.28 2.57
422 423 1.000145 GCGGCAACTTGCTAGTCTAC 59.000 55.000 13.43 0.00 44.28 2.59
423 424 0.108329 GGCGGCAACTTGCTAGTCTA 60.108 55.000 13.43 0.00 44.28 2.59
424 425 1.376037 GGCGGCAACTTGCTAGTCT 60.376 57.895 13.43 0.00 44.28 3.24
425 426 1.362406 GAGGCGGCAACTTGCTAGTC 61.362 60.000 13.08 9.48 44.28 2.59
426 427 1.376037 GAGGCGGCAACTTGCTAGT 60.376 57.895 13.08 0.00 44.28 2.57
427 428 0.955428 TTGAGGCGGCAACTTGCTAG 60.955 55.000 13.08 9.10 44.28 3.42
428 429 0.955428 CTTGAGGCGGCAACTTGCTA 60.955 55.000 13.08 0.00 44.28 3.49
429 430 2.203337 TTGAGGCGGCAACTTGCT 60.203 55.556 13.08 0.00 44.28 3.91
430 431 2.256461 CTTGAGGCGGCAACTTGC 59.744 61.111 13.08 5.08 44.08 4.01
431 432 2.256461 GCTTGAGGCGGCAACTTG 59.744 61.111 13.08 0.00 0.00 3.16
432 433 2.985847 GGCTTGAGGCGGCAACTT 60.986 61.111 13.08 0.00 42.94 2.66
449 450 3.993376 TAGTTTACAGCCGGCGCCG 62.993 63.158 41.00 41.00 39.44 6.46
450 451 2.125431 TAGTTTACAGCCGGCGCC 60.125 61.111 23.20 19.07 34.57 6.53
451 452 1.017701 AACTAGTTTACAGCCGGCGC 61.018 55.000 23.20 0.00 0.00 6.53
452 453 1.435577 AAACTAGTTTACAGCCGGCG 58.564 50.000 23.20 18.60 0.00 6.46
453 454 4.874396 AGATAAAACTAGTTTACAGCCGGC 59.126 41.667 21.89 21.89 34.50 6.13
454 455 6.980051 AAGATAAAACTAGTTTACAGCCGG 57.020 37.500 20.83 0.00 34.50 6.13
455 456 7.491696 AGCTAAGATAAAACTAGTTTACAGCCG 59.508 37.037 20.83 8.64 34.50 5.52
456 457 8.719560 AGCTAAGATAAAACTAGTTTACAGCC 57.280 34.615 20.83 9.07 34.50 4.85
457 458 9.367444 TGAGCTAAGATAAAACTAGTTTACAGC 57.633 33.333 20.83 19.26 34.50 4.40
464 465 9.535878 GCAATACTGAGCTAAGATAAAACTAGT 57.464 33.333 4.63 0.00 0.00 2.57
465 466 9.757227 AGCAATACTGAGCTAAGATAAAACTAG 57.243 33.333 4.63 0.00 39.78 2.57
467 468 9.454859 AAAGCAATACTGAGCTAAGATAAAACT 57.545 29.630 4.63 0.00 40.90 2.66
474 475 9.938280 TTAACTAAAAGCAATACTGAGCTAAGA 57.062 29.630 4.63 0.00 40.90 2.10
501 502 9.418045 CGAAAGGGTTACATTTTGAACATATTT 57.582 29.630 0.00 0.00 0.00 1.40
502 503 8.581578 ACGAAAGGGTTACATTTTGAACATATT 58.418 29.630 0.00 0.00 0.00 1.28
503 504 8.117813 ACGAAAGGGTTACATTTTGAACATAT 57.882 30.769 0.00 0.00 0.00 1.78
504 505 7.308710 GGACGAAAGGGTTACATTTTGAACATA 60.309 37.037 0.00 0.00 0.00 2.29
505 506 6.399639 ACGAAAGGGTTACATTTTGAACAT 57.600 33.333 0.00 0.00 0.00 2.71
506 507 5.221087 GGACGAAAGGGTTACATTTTGAACA 60.221 40.000 0.00 0.00 0.00 3.18
507 508 5.217393 GGACGAAAGGGTTACATTTTGAAC 58.783 41.667 0.00 0.00 0.00 3.18
508 509 4.888239 TGGACGAAAGGGTTACATTTTGAA 59.112 37.500 0.00 0.00 0.00 2.69
509 510 4.462133 TGGACGAAAGGGTTACATTTTGA 58.538 39.130 0.00 0.00 0.00 2.69
510 511 4.839668 TGGACGAAAGGGTTACATTTTG 57.160 40.909 0.00 0.00 0.00 2.44
511 512 6.041069 TCAATTGGACGAAAGGGTTACATTTT 59.959 34.615 5.42 0.00 0.00 1.82
512 513 5.536916 TCAATTGGACGAAAGGGTTACATTT 59.463 36.000 5.42 0.00 0.00 2.32
513 514 5.048294 GTCAATTGGACGAAAGGGTTACATT 60.048 40.000 5.42 0.00 36.65 2.71
514 515 4.457949 GTCAATTGGACGAAAGGGTTACAT 59.542 41.667 5.42 0.00 36.65 2.29
515 516 3.816523 GTCAATTGGACGAAAGGGTTACA 59.183 43.478 5.42 0.00 36.65 2.41
516 517 4.414999 GTCAATTGGACGAAAGGGTTAC 57.585 45.455 5.42 0.00 36.65 2.50
527 528 2.030363 TCATGCAAACCGTCAATTGGAC 60.030 45.455 5.42 2.02 43.36 4.02
528 529 2.234143 TCATGCAAACCGTCAATTGGA 58.766 42.857 5.42 0.00 0.00 3.53
529 530 2.721274 TCATGCAAACCGTCAATTGG 57.279 45.000 5.42 0.00 0.00 3.16
530 531 4.091800 GGATTTCATGCAAACCGTCAATTG 59.908 41.667 0.00 0.00 0.00 2.32
531 532 4.244862 GGATTTCATGCAAACCGTCAATT 58.755 39.130 0.00 0.00 0.00 2.32
532 533 3.257873 TGGATTTCATGCAAACCGTCAAT 59.742 39.130 0.00 0.00 0.00 2.57
533 534 2.625314 TGGATTTCATGCAAACCGTCAA 59.375 40.909 0.00 0.00 0.00 3.18
534 535 2.234143 TGGATTTCATGCAAACCGTCA 58.766 42.857 0.00 0.00 0.00 4.35
535 536 3.119531 TGATGGATTTCATGCAAACCGTC 60.120 43.478 16.30 16.30 35.97 4.79
536 537 2.824936 TGATGGATTTCATGCAAACCGT 59.175 40.909 0.00 0.00 35.97 4.83
537 538 3.507103 TGATGGATTTCATGCAAACCG 57.493 42.857 0.00 0.00 35.97 4.44
550 551 9.976511 GATGAATTTCATACAAACATGATGGAT 57.023 29.630 11.79 0.00 37.20 3.41
551 552 8.968969 TGATGAATTTCATACAAACATGATGGA 58.031 29.630 11.79 0.00 37.20 3.41
552 553 9.758651 ATGATGAATTTCATACAAACATGATGG 57.241 29.630 11.79 0.00 37.20 3.51
568 569 9.748708 CGGGTTTCATATAAACATGATGAATTT 57.251 29.630 0.00 0.00 38.88 1.82
569 570 8.359642 CCGGGTTTCATATAAACATGATGAATT 58.640 33.333 0.00 0.00 38.88 2.17
570 571 7.523709 GCCGGGTTTCATATAAACATGATGAAT 60.524 37.037 2.18 0.00 38.88 2.57
571 572 6.238897 GCCGGGTTTCATATAAACATGATGAA 60.239 38.462 2.18 0.75 37.71 2.57
572 573 5.240623 GCCGGGTTTCATATAAACATGATGA 59.759 40.000 2.18 0.00 34.95 2.92
573 574 5.241506 AGCCGGGTTTCATATAAACATGATG 59.758 40.000 0.00 0.00 34.95 3.07
574 575 5.241506 CAGCCGGGTTTCATATAAACATGAT 59.758 40.000 1.64 0.00 34.95 2.45
575 576 4.578516 CAGCCGGGTTTCATATAAACATGA 59.421 41.667 1.64 0.00 33.10 3.07
576 577 4.338118 ACAGCCGGGTTTCATATAAACATG 59.662 41.667 1.64 0.00 32.04 3.21
577 578 4.338118 CACAGCCGGGTTTCATATAAACAT 59.662 41.667 1.64 0.00 32.04 2.71
578 579 3.692101 CACAGCCGGGTTTCATATAAACA 59.308 43.478 1.64 0.00 32.04 2.83
579 580 3.692593 ACACAGCCGGGTTTCATATAAAC 59.307 43.478 1.64 0.00 0.00 2.01
580 581 3.958018 ACACAGCCGGGTTTCATATAAA 58.042 40.909 1.64 0.00 0.00 1.40
581 582 3.637911 ACACAGCCGGGTTTCATATAA 57.362 42.857 1.64 0.00 0.00 0.98
582 583 3.637911 AACACAGCCGGGTTTCATATA 57.362 42.857 1.64 0.00 0.00 0.86
583 584 2.491693 CAAACACAGCCGGGTTTCATAT 59.508 45.455 1.64 0.00 35.17 1.78
584 585 1.883275 CAAACACAGCCGGGTTTCATA 59.117 47.619 1.64 0.00 35.17 2.15
585 586 0.673437 CAAACACAGCCGGGTTTCAT 59.327 50.000 1.64 0.00 35.17 2.57
586 587 2.010582 GCAAACACAGCCGGGTTTCA 62.011 55.000 1.64 0.00 35.17 2.69
587 588 1.299850 GCAAACACAGCCGGGTTTC 60.300 57.895 1.64 0.00 35.17 2.78
588 589 1.398958 ATGCAAACACAGCCGGGTTT 61.399 50.000 1.64 1.36 37.69 3.27
589 590 0.538516 TATGCAAACACAGCCGGGTT 60.539 50.000 1.64 0.00 0.00 4.11
590 591 0.538516 TTATGCAAACACAGCCGGGT 60.539 50.000 0.00 0.00 0.00 5.28
591 592 0.600557 TTTATGCAAACACAGCCGGG 59.399 50.000 2.18 0.00 0.00 5.73
592 593 2.652941 ATTTATGCAAACACAGCCGG 57.347 45.000 0.00 0.00 0.00 6.13
593 594 6.237808 GGATTAAATTTATGCAAACACAGCCG 60.238 38.462 0.00 0.00 0.00 5.52
594 595 6.237808 CGGATTAAATTTATGCAAACACAGCC 60.238 38.462 0.00 0.00 0.00 4.85
595 596 6.237808 CCGGATTAAATTTATGCAAACACAGC 60.238 38.462 0.00 0.00 0.00 4.40
596 597 6.811170 ACCGGATTAAATTTATGCAAACACAG 59.189 34.615 9.46 0.00 0.00 3.66
597 598 6.692486 ACCGGATTAAATTTATGCAAACACA 58.308 32.000 9.46 0.00 0.00 3.72
598 599 7.329717 TCAACCGGATTAAATTTATGCAAACAC 59.670 33.333 9.46 0.00 0.00 3.32
599 600 7.378966 TCAACCGGATTAAATTTATGCAAACA 58.621 30.769 9.46 0.00 0.00 2.83
600 601 7.820044 TCAACCGGATTAAATTTATGCAAAC 57.180 32.000 9.46 0.00 0.00 2.93
601 602 9.442047 AAATCAACCGGATTAAATTTATGCAAA 57.558 25.926 9.46 0.00 45.46 3.68
615 616 8.343168 TCAAACACTTTATAAATCAACCGGAT 57.657 30.769 9.46 0.00 38.05 4.18
616 617 7.747155 TCAAACACTTTATAAATCAACCGGA 57.253 32.000 9.46 0.00 0.00 5.14
617 618 8.804688 TTTCAAACACTTTATAAATCAACCGG 57.195 30.769 0.00 0.00 0.00 5.28
632 633 9.561069 ACACTATTCTCATACTTTTCAAACACT 57.439 29.630 0.00 0.00 0.00 3.55
635 636 9.612620 CCAACACTATTCTCATACTTTTCAAAC 57.387 33.333 0.00 0.00 0.00 2.93
636 637 9.567776 TCCAACACTATTCTCATACTTTTCAAA 57.432 29.630 0.00 0.00 0.00 2.69
637 638 9.739276 ATCCAACACTATTCTCATACTTTTCAA 57.261 29.630 0.00 0.00 0.00 2.69
638 639 9.166173 CATCCAACACTATTCTCATACTTTTCA 57.834 33.333 0.00 0.00 0.00 2.69
639 640 8.616076 CCATCCAACACTATTCTCATACTTTTC 58.384 37.037 0.00 0.00 0.00 2.29
640 641 7.067494 GCCATCCAACACTATTCTCATACTTTT 59.933 37.037 0.00 0.00 0.00 2.27
641 642 6.543831 GCCATCCAACACTATTCTCATACTTT 59.456 38.462 0.00 0.00 0.00 2.66
642 643 6.058183 GCCATCCAACACTATTCTCATACTT 58.942 40.000 0.00 0.00 0.00 2.24
643 644 5.130975 TGCCATCCAACACTATTCTCATACT 59.869 40.000 0.00 0.00 0.00 2.12
644 645 5.368145 TGCCATCCAACACTATTCTCATAC 58.632 41.667 0.00 0.00 0.00 2.39
645 646 5.130975 ACTGCCATCCAACACTATTCTCATA 59.869 40.000 0.00 0.00 0.00 2.15
646 647 4.080129 ACTGCCATCCAACACTATTCTCAT 60.080 41.667 0.00 0.00 0.00 2.90
647 648 3.264193 ACTGCCATCCAACACTATTCTCA 59.736 43.478 0.00 0.00 0.00 3.27
648 649 3.878778 ACTGCCATCCAACACTATTCTC 58.121 45.455 0.00 0.00 0.00 2.87
649 650 4.307032 AACTGCCATCCAACACTATTCT 57.693 40.909 0.00 0.00 0.00 2.40
650 651 4.737054 CAAACTGCCATCCAACACTATTC 58.263 43.478 0.00 0.00 0.00 1.75
651 652 3.056607 GCAAACTGCCATCCAACACTATT 60.057 43.478 0.00 0.00 37.42 1.73
652 653 2.493278 GCAAACTGCCATCCAACACTAT 59.507 45.455 0.00 0.00 37.42 2.12
653 654 1.885887 GCAAACTGCCATCCAACACTA 59.114 47.619 0.00 0.00 37.42 2.74
654 655 0.675633 GCAAACTGCCATCCAACACT 59.324 50.000 0.00 0.00 37.42 3.55
655 656 3.199764 GCAAACTGCCATCCAACAC 57.800 52.632 0.00 0.00 37.42 3.32
666 667 0.109597 GACAAGGATGCGGCAAACTG 60.110 55.000 6.82 5.00 0.00 3.16
667 668 1.244019 GGACAAGGATGCGGCAAACT 61.244 55.000 6.82 5.26 0.00 2.66
668 669 1.212751 GGACAAGGATGCGGCAAAC 59.787 57.895 6.82 2.57 0.00 2.93
669 670 2.331893 CGGACAAGGATGCGGCAAA 61.332 57.895 6.82 0.00 0.00 3.68
670 671 2.745884 CGGACAAGGATGCGGCAA 60.746 61.111 6.82 0.00 0.00 4.52
673 674 3.197790 CTGCGGACAAGGATGCGG 61.198 66.667 0.00 0.00 0.00 5.69
674 675 2.125552 TCTGCGGACAAGGATGCG 60.126 61.111 0.00 0.00 0.00 4.73
675 676 1.078848 AGTCTGCGGACAAGGATGC 60.079 57.895 27.02 0.00 44.36 3.91
676 677 0.742281 CCAGTCTGCGGACAAGGATG 60.742 60.000 27.02 15.52 44.36 3.51
677 678 1.599047 CCAGTCTGCGGACAAGGAT 59.401 57.895 27.02 3.33 44.36 3.24
678 679 3.059982 CCAGTCTGCGGACAAGGA 58.940 61.111 27.02 0.00 44.36 3.36
679 680 2.743928 GCCAGTCTGCGGACAAGG 60.744 66.667 27.02 25.90 44.36 3.61
680 681 2.743928 GGCCAGTCTGCGGACAAG 60.744 66.667 27.02 17.94 44.36 3.16
681 682 4.329545 GGGCCAGTCTGCGGACAA 62.330 66.667 27.02 0.00 44.36 3.18
683 684 4.459089 GAGGGCCAGTCTGCGGAC 62.459 72.222 18.39 18.39 42.41 4.79
686 687 4.803426 GACGAGGGCCAGTCTGCG 62.803 72.222 20.40 10.17 34.74 5.18
687 688 4.459089 GGACGAGGGCCAGTCTGC 62.459 72.222 24.58 10.89 37.52 4.26
688 689 4.135153 CGGACGAGGGCCAGTCTG 62.135 72.222 24.58 22.90 37.52 3.51
705 706 0.815615 AAATTCCTCATCCGCTCCGC 60.816 55.000 0.00 0.00 0.00 5.54
706 707 1.668419 AAAATTCCTCATCCGCTCCG 58.332 50.000 0.00 0.00 0.00 4.63
726 727 7.921214 TGCATTTTTAACCGTCATCTGTAAAAA 59.079 29.630 0.00 0.00 32.09 1.94
727 728 7.426410 TGCATTTTTAACCGTCATCTGTAAAA 58.574 30.769 0.00 0.00 0.00 1.52
728 729 6.971602 TGCATTTTTAACCGTCATCTGTAAA 58.028 32.000 0.00 0.00 0.00 2.01
729 730 6.561737 TGCATTTTTAACCGTCATCTGTAA 57.438 33.333 0.00 0.00 0.00 2.41
730 731 6.751514 ATGCATTTTTAACCGTCATCTGTA 57.248 33.333 0.00 0.00 0.00 2.74
731 732 5.643379 ATGCATTTTTAACCGTCATCTGT 57.357 34.783 0.00 0.00 0.00 3.41
732 733 6.949578 AAATGCATTTTTAACCGTCATCTG 57.050 33.333 18.99 0.00 0.00 2.90
733 734 8.250332 ACATAAATGCATTTTTAACCGTCATCT 58.750 29.630 28.45 2.95 0.00 2.90
734 735 8.406172 ACATAAATGCATTTTTAACCGTCATC 57.594 30.769 28.45 0.00 0.00 2.92
735 736 8.031864 TGACATAAATGCATTTTTAACCGTCAT 58.968 29.630 28.45 10.73 31.27 3.06
736 737 7.327275 GTGACATAAATGCATTTTTAACCGTCA 59.673 33.333 28.45 23.15 32.42 4.35
737 738 7.201401 GGTGACATAAATGCATTTTTAACCGTC 60.201 37.037 28.45 21.29 0.00 4.79
738 739 6.588373 GGTGACATAAATGCATTTTTAACCGT 59.412 34.615 28.45 14.81 0.00 4.83
739 740 6.811170 AGGTGACATAAATGCATTTTTAACCG 59.189 34.615 28.45 11.97 0.00 4.44
740 741 8.546597 AAGGTGACATAAATGCATTTTTAACC 57.453 30.769 28.45 24.45 0.00 2.85
744 745 9.723601 ACAATAAGGTGACATAAATGCATTTTT 57.276 25.926 28.45 18.63 0.00 1.94
746 747 9.801873 GTACAATAAGGTGACATAAATGCATTT 57.198 29.630 26.72 26.72 0.00 2.32
747 748 9.189156 AGTACAATAAGGTGACATAAATGCATT 57.811 29.630 5.99 5.99 0.00 3.56
748 749 8.752005 AGTACAATAAGGTGACATAAATGCAT 57.248 30.769 0.00 0.00 0.00 3.96
749 750 8.458052 CAAGTACAATAAGGTGACATAAATGCA 58.542 33.333 0.00 0.00 0.00 3.96
750 751 7.432252 GCAAGTACAATAAGGTGACATAAATGC 59.568 37.037 0.00 0.00 0.00 3.56
751 752 8.677300 AGCAAGTACAATAAGGTGACATAAATG 58.323 33.333 0.00 0.00 0.00 2.32
752 753 8.677300 CAGCAAGTACAATAAGGTGACATAAAT 58.323 33.333 0.00 0.00 0.00 1.40
753 754 7.663905 ACAGCAAGTACAATAAGGTGACATAAA 59.336 33.333 0.00 0.00 0.00 1.40
754 755 7.165485 ACAGCAAGTACAATAAGGTGACATAA 58.835 34.615 0.00 0.00 0.00 1.90
755 756 6.707290 ACAGCAAGTACAATAAGGTGACATA 58.293 36.000 0.00 0.00 0.00 2.29
756 757 5.560724 ACAGCAAGTACAATAAGGTGACAT 58.439 37.500 0.00 0.00 0.00 3.06
757 758 4.968259 ACAGCAAGTACAATAAGGTGACA 58.032 39.130 0.00 0.00 0.00 3.58
758 759 4.994852 TGACAGCAAGTACAATAAGGTGAC 59.005 41.667 0.00 0.00 0.00 3.67
759 760 5.222079 TGACAGCAAGTACAATAAGGTGA 57.778 39.130 0.00 0.00 0.00 4.02
760 761 5.931532 CTTGACAGCAAGTACAATAAGGTG 58.068 41.667 0.00 0.00 45.10 4.00
773 774 1.003839 CTACGGGCCTTGACAGCAA 60.004 57.895 0.84 0.00 0.00 3.91
774 775 2.662596 CTACGGGCCTTGACAGCA 59.337 61.111 0.84 0.00 0.00 4.41
775 776 2.125106 CCTACGGGCCTTGACAGC 60.125 66.667 0.84 0.00 0.00 4.40
776 777 1.550130 TTCCCTACGGGCCTTGACAG 61.550 60.000 0.84 0.00 43.94 3.51
777 778 0.912487 ATTCCCTACGGGCCTTGACA 60.912 55.000 0.84 0.00 43.94 3.58
778 779 0.179054 GATTCCCTACGGGCCTTGAC 60.179 60.000 0.84 0.00 43.94 3.18
779 780 1.682451 CGATTCCCTACGGGCCTTGA 61.682 60.000 0.84 0.00 43.94 3.02
780 781 1.227556 CGATTCCCTACGGGCCTTG 60.228 63.158 0.84 0.00 43.94 3.61
781 782 1.269703 AACGATTCCCTACGGGCCTT 61.270 55.000 0.84 0.00 43.94 4.35
782 783 1.688187 AACGATTCCCTACGGGCCT 60.688 57.895 0.84 0.00 43.94 5.19
783 784 1.523032 CAACGATTCCCTACGGGCC 60.523 63.158 0.00 0.00 43.94 5.80
784 785 1.523032 CCAACGATTCCCTACGGGC 60.523 63.158 0.00 0.00 43.94 6.13
787 788 0.748450 TAGGCCAACGATTCCCTACG 59.252 55.000 5.01 0.00 0.00 3.51
826 827 4.508047 GGGATACATGAATTCATCCTGGCT 60.508 45.833 18.16 1.45 37.65 4.75
827 828 3.760684 GGGATACATGAATTCATCCTGGC 59.239 47.826 18.16 7.05 37.65 4.85
853 856 5.163301 GGGCTAGGATGACTTGAGTTATGAA 60.163 44.000 0.00 0.00 0.00 2.57
870 873 4.806640 ATGTGAAATTTGTTGGGCTAGG 57.193 40.909 0.00 0.00 0.00 3.02
987 1009 2.779755 TCGCCATCTTTTGCTTCCTA 57.220 45.000 0.00 0.00 0.00 2.94
1918 1970 3.770040 CTGGTCGCCCATGGTCGA 61.770 66.667 14.99 14.99 40.90 4.20
2307 2380 2.450609 TGAAGTCGTAGAAGTTGCCC 57.549 50.000 0.00 0.00 39.69 5.36
2358 2431 1.503542 CCGGTAGTTCACGTACGCT 59.496 57.895 16.72 6.78 0.00 5.07
2463 2539 1.248785 ACGCGAGCCTCTGGAAGTTA 61.249 55.000 15.93 0.00 33.76 2.24
2508 2584 3.821600 TCTGCTCGTTTCTGAAGTAGTCT 59.178 43.478 0.00 0.00 0.00 3.24
2538 2614 1.354101 TACGTCCTTGGACCAATGGT 58.646 50.000 3.74 3.74 39.44 3.55
2696 2772 1.825090 TTGGTTGCTGCATCCTACTG 58.175 50.000 25.44 0.00 0.00 2.74
2732 2811 4.400845 CGTGCTTTCATGAATGAACTGAG 58.599 43.478 23.26 12.13 45.63 3.35
2755 2834 2.609459 CAGTCCATCACAGATAAACCGC 59.391 50.000 0.00 0.00 0.00 5.68
2817 2896 4.405358 AGGCAAAGGTTCACTGAAATCAAA 59.595 37.500 0.00 0.00 0.00 2.69
2818 2897 3.960102 AGGCAAAGGTTCACTGAAATCAA 59.040 39.130 0.00 0.00 0.00 2.57
2819 2898 3.565307 AGGCAAAGGTTCACTGAAATCA 58.435 40.909 0.00 0.00 0.00 2.57
2820 2899 3.823304 AGAGGCAAAGGTTCACTGAAATC 59.177 43.478 0.00 0.00 0.00 2.17
2849 2929 0.253044 GCTGGAATCAGGTGGCAGTA 59.747 55.000 0.00 0.00 41.19 2.74
2900 2980 4.077300 TCTATCCGCAGAAGAAATGCAT 57.923 40.909 0.00 0.00 44.05 3.96
2901 2981 3.541996 TCTATCCGCAGAAGAAATGCA 57.458 42.857 0.00 0.00 44.05 3.96
2902 2982 6.734104 AATATCTATCCGCAGAAGAAATGC 57.266 37.500 0.00 0.00 40.35 3.56
3064 3480 3.403038 GATACTTGAAGCATACCCGCAT 58.597 45.455 0.00 0.00 0.00 4.73
3066 3482 2.143925 GGATACTTGAAGCATACCCGC 58.856 52.381 0.00 0.00 0.00 6.13
3067 3483 2.404215 CGGATACTTGAAGCATACCCG 58.596 52.381 0.00 0.00 0.00 5.28
3177 3601 9.838975 CTGTGATTTGTATGCATTAACTTAACA 57.161 29.630 3.54 0.00 0.00 2.41
3183 3607 8.961092 CATAAGCTGTGATTTGTATGCATTAAC 58.039 33.333 3.54 0.00 0.00 2.01
3254 5553 3.193691 TCAGCAGCTAACTACCTCACTTC 59.806 47.826 0.00 0.00 0.00 3.01
3274 5573 3.009473 CCCAAAGGACTCTGAATTCCTCA 59.991 47.826 2.27 0.00 41.72 3.86
3275 5574 3.009584 ACCCAAAGGACTCTGAATTCCTC 59.990 47.826 2.27 0.00 41.72 3.71
3294 5593 1.676006 CATTCACCAATCGCCTTACCC 59.324 52.381 0.00 0.00 0.00 3.69
3320 5619 2.747989 GGGGAAATGGTCGAGAGAAAAC 59.252 50.000 0.00 0.00 45.01 2.43
3334 5633 2.584608 CGACGCAGGAGGGGAAAT 59.415 61.111 0.00 0.00 0.00 2.17
3360 5659 1.442148 GGTTGCCCTCCTAGTAGCG 59.558 63.158 0.00 0.00 0.00 4.26
3404 5703 1.690985 GAGGGAAGGAGGTGGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
3452 5751 1.206849 CAGCTGAGGGAAGAAGAGGTC 59.793 57.143 8.42 0.00 0.00 3.85
3468 5767 4.320456 CGCCAGACACCACCAGCT 62.320 66.667 0.00 0.00 0.00 4.24
3536 5835 2.590575 ACACCCTTGGTTGCGTCG 60.591 61.111 0.00 0.00 31.02 5.12
3539 5838 3.353836 CCGACACCCTTGGTTGCG 61.354 66.667 0.00 0.00 31.02 4.85
3542 5841 4.636435 CCGCCGACACCCTTGGTT 62.636 66.667 0.00 0.00 31.02 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.