Multiple sequence alignment - TraesCS7B01G272700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G272700 chr7B 100.000 3199 0 0 1 3199 500255912 500252714 0.000000e+00 5908.0
1 TraesCS7B01G272700 chr7B 83.168 101 11 5 1379 1476 106340257 106340354 1.580000e-13 87.9
2 TraesCS7B01G272700 chr7D 92.402 2290 90 41 283 2520 476140830 476138573 0.000000e+00 3188.0
3 TraesCS7B01G272700 chr7D 87.287 645 58 10 2571 3199 37650364 37651000 0.000000e+00 715.0
4 TraesCS7B01G272700 chr7D 82.178 101 12 5 1379 1476 141188258 141188161 7.360000e-12 82.4
5 TraesCS7B01G272700 chr7A 86.960 2201 142 62 431 2522 519558001 519560165 0.000000e+00 2340.0
6 TraesCS7B01G272700 chr7A 80.769 234 27 12 2566 2785 698426645 698426874 1.970000e-37 167.0
7 TraesCS7B01G272700 chr7A 83.168 101 11 5 1379 1476 143145109 143145206 1.580000e-13 87.9
8 TraesCS7B01G272700 chr2B 91.549 639 34 7 2580 3199 66561702 66562339 0.000000e+00 863.0
9 TraesCS7B01G272700 chr3B 90.596 638 42 12 2578 3199 17796284 17795649 0.000000e+00 830.0
10 TraesCS7B01G272700 chr3B 89.258 633 52 13 2580 3198 222321146 222321776 0.000000e+00 778.0
11 TraesCS7B01G272700 chr3B 90.087 575 41 11 2639 3198 208754748 208755321 0.000000e+00 732.0
12 TraesCS7B01G272700 chr6A 85.804 634 66 15 2580 3196 340380247 340380873 0.000000e+00 651.0
13 TraesCS7B01G272700 chr6A 87.755 98 12 0 1379 1476 541402483 541402386 7.250000e-22 115.0
14 TraesCS7B01G272700 chr1D 85.008 647 75 14 2570 3198 435807433 435806791 3.480000e-179 638.0
15 TraesCS7B01G272700 chr1A 85.266 638 68 14 2580 3198 445653794 445653164 4.500000e-178 634.0
16 TraesCS7B01G272700 chr4D 84.961 645 68 14 2570 3198 101496841 101497472 7.530000e-176 627.0
17 TraesCS7B01G272700 chr4A 84.882 635 68 21 2582 3198 473775149 473774525 1.630000e-172 616.0
18 TraesCS7B01G272700 chr4A 97.436 39 0 1 2543 2580 583724970 583724932 7.410000e-07 65.8
19 TraesCS7B01G272700 chr3D 81.818 594 89 10 2580 3158 91803952 91804541 6.210000e-132 481.0
20 TraesCS7B01G272700 chrUn 82.540 378 43 10 2579 2941 102394266 102394635 8.620000e-81 311.0
21 TraesCS7B01G272700 chr5A 80.000 225 28 8 2576 2786 20666785 20666564 1.990000e-32 150.0
22 TraesCS7B01G272700 chr6D 85.714 98 14 0 1379 1476 394922628 394922531 1.570000e-18 104.0
23 TraesCS7B01G272700 chr5B 88.462 52 6 0 1390 1441 496764231 496764282 2.660000e-06 63.9
24 TraesCS7B01G272700 chr5B 88.462 52 6 0 1390 1441 551170355 551170406 2.660000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G272700 chr7B 500252714 500255912 3198 True 5908 5908 100.000 1 3199 1 chr7B.!!$R1 3198
1 TraesCS7B01G272700 chr7D 476138573 476140830 2257 True 3188 3188 92.402 283 2520 1 chr7D.!!$R2 2237
2 TraesCS7B01G272700 chr7D 37650364 37651000 636 False 715 715 87.287 2571 3199 1 chr7D.!!$F1 628
3 TraesCS7B01G272700 chr7A 519558001 519560165 2164 False 2340 2340 86.960 431 2522 1 chr7A.!!$F2 2091
4 TraesCS7B01G272700 chr2B 66561702 66562339 637 False 863 863 91.549 2580 3199 1 chr2B.!!$F1 619
5 TraesCS7B01G272700 chr3B 17795649 17796284 635 True 830 830 90.596 2578 3199 1 chr3B.!!$R1 621
6 TraesCS7B01G272700 chr3B 222321146 222321776 630 False 778 778 89.258 2580 3198 1 chr3B.!!$F2 618
7 TraesCS7B01G272700 chr3B 208754748 208755321 573 False 732 732 90.087 2639 3198 1 chr3B.!!$F1 559
8 TraesCS7B01G272700 chr6A 340380247 340380873 626 False 651 651 85.804 2580 3196 1 chr6A.!!$F1 616
9 TraesCS7B01G272700 chr1D 435806791 435807433 642 True 638 638 85.008 2570 3198 1 chr1D.!!$R1 628
10 TraesCS7B01G272700 chr1A 445653164 445653794 630 True 634 634 85.266 2580 3198 1 chr1A.!!$R1 618
11 TraesCS7B01G272700 chr4D 101496841 101497472 631 False 627 627 84.961 2570 3198 1 chr4D.!!$F1 628
12 TraesCS7B01G272700 chr4A 473774525 473775149 624 True 616 616 84.882 2582 3198 1 chr4A.!!$R1 616
13 TraesCS7B01G272700 chr3D 91803952 91804541 589 False 481 481 81.818 2580 3158 1 chr3D.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.034186 TTAATGCTGAGGTGGCAGGG 60.034 55.0 0.00 0.0 43.15 4.45 F
1248 1338 0.035915 TTTGGCTACGCTGGCATGTA 60.036 50.0 5.42 0.0 42.07 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 1845 0.389757 GCCGCCTAGCTTAGCTTACT 59.610 55.0 13.44 0.0 40.44 2.24 R
2231 2378 0.108992 TCGCTCCGAACATGTGTACC 60.109 55.0 0.00 0.0 31.06 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.365265 GGGGGCTCGTTTGTGCTG 61.365 66.667 0.00 0.00 35.02 4.41
31 32 2.281484 GGGGCTCGTTTGTGCTGA 60.281 61.111 0.00 0.00 35.02 4.26
32 33 2.328099 GGGGCTCGTTTGTGCTGAG 61.328 63.158 0.00 0.00 35.02 3.35
33 34 2.328099 GGGCTCGTTTGTGCTGAGG 61.328 63.158 0.00 0.00 35.02 3.86
34 35 1.301716 GGCTCGTTTGTGCTGAGGA 60.302 57.895 0.00 0.00 35.02 3.71
35 36 0.884704 GGCTCGTTTGTGCTGAGGAA 60.885 55.000 0.00 0.00 35.02 3.36
36 37 1.160137 GCTCGTTTGTGCTGAGGAAT 58.840 50.000 0.00 0.00 0.00 3.01
37 38 1.135859 GCTCGTTTGTGCTGAGGAATG 60.136 52.381 0.00 0.00 0.00 2.67
38 39 2.416747 CTCGTTTGTGCTGAGGAATGA 58.583 47.619 0.00 0.00 0.00 2.57
39 40 2.143122 TCGTTTGTGCTGAGGAATGAC 58.857 47.619 0.00 0.00 0.00 3.06
40 41 1.197721 CGTTTGTGCTGAGGAATGACC 59.802 52.381 0.00 0.00 39.35 4.02
41 42 1.541588 GTTTGTGCTGAGGAATGACCC 59.458 52.381 0.00 0.00 40.05 4.46
42 43 0.321564 TTGTGCTGAGGAATGACCCG 60.322 55.000 0.00 0.00 40.05 5.28
43 44 1.191489 TGTGCTGAGGAATGACCCGA 61.191 55.000 0.00 0.00 40.05 5.14
44 45 0.179000 GTGCTGAGGAATGACCCGAT 59.821 55.000 0.00 0.00 40.05 4.18
45 46 0.465705 TGCTGAGGAATGACCCGATC 59.534 55.000 0.00 0.00 40.05 3.69
46 47 0.598680 GCTGAGGAATGACCCGATCG 60.599 60.000 8.51 8.51 40.05 3.69
47 48 1.032794 CTGAGGAATGACCCGATCGA 58.967 55.000 18.66 0.00 40.05 3.59
48 49 1.409064 CTGAGGAATGACCCGATCGAA 59.591 52.381 18.66 0.00 40.05 3.71
49 50 1.136305 TGAGGAATGACCCGATCGAAC 59.864 52.381 18.66 7.89 40.05 3.95
50 51 0.102481 AGGAATGACCCGATCGAACG 59.898 55.000 18.66 8.26 40.05 3.95
51 52 0.101759 GGAATGACCCGATCGAACGA 59.898 55.000 18.66 0.00 35.09 3.85
52 53 1.269621 GGAATGACCCGATCGAACGAT 60.270 52.381 18.66 9.46 37.59 3.73
53 54 2.470821 GAATGACCCGATCGAACGATT 58.529 47.619 18.66 7.98 34.60 3.34
54 55 2.135664 ATGACCCGATCGAACGATTC 57.864 50.000 18.66 12.03 34.60 2.52
55 56 1.100510 TGACCCGATCGAACGATTCT 58.899 50.000 18.66 0.00 34.60 2.40
56 57 1.475280 TGACCCGATCGAACGATTCTT 59.525 47.619 18.66 0.00 34.60 2.52
57 58 2.684374 TGACCCGATCGAACGATTCTTA 59.316 45.455 18.66 0.00 34.60 2.10
58 59 3.129113 TGACCCGATCGAACGATTCTTAA 59.871 43.478 18.66 0.00 34.60 1.85
59 60 4.202080 TGACCCGATCGAACGATTCTTAAT 60.202 41.667 18.66 0.00 34.60 1.40
60 61 4.049186 ACCCGATCGAACGATTCTTAATG 58.951 43.478 18.66 0.00 34.60 1.90
61 62 3.120991 CCCGATCGAACGATTCTTAATGC 60.121 47.826 18.66 0.00 34.60 3.56
62 63 3.736252 CCGATCGAACGATTCTTAATGCT 59.264 43.478 18.66 0.00 34.60 3.79
63 64 4.375405 CCGATCGAACGATTCTTAATGCTG 60.375 45.833 18.66 0.00 34.60 4.41
64 65 4.441087 CGATCGAACGATTCTTAATGCTGA 59.559 41.667 10.26 0.00 34.60 4.26
65 66 5.386831 CGATCGAACGATTCTTAATGCTGAG 60.387 44.000 10.26 0.00 34.60 3.35
66 67 4.112634 TCGAACGATTCTTAATGCTGAGG 58.887 43.478 0.00 0.00 0.00 3.86
67 68 3.865745 CGAACGATTCTTAATGCTGAGGT 59.134 43.478 0.00 0.00 0.00 3.85
68 69 4.259970 CGAACGATTCTTAATGCTGAGGTG 60.260 45.833 0.00 0.00 0.00 4.00
69 70 3.535561 ACGATTCTTAATGCTGAGGTGG 58.464 45.455 0.00 0.00 0.00 4.61
70 71 2.289002 CGATTCTTAATGCTGAGGTGGC 59.711 50.000 0.00 0.00 0.00 5.01
71 72 2.877097 TTCTTAATGCTGAGGTGGCA 57.123 45.000 0.00 0.00 44.05 4.92
72 73 2.408271 TCTTAATGCTGAGGTGGCAG 57.592 50.000 0.00 0.00 43.15 4.85
73 74 1.065199 TCTTAATGCTGAGGTGGCAGG 60.065 52.381 0.00 0.00 43.15 4.85
74 75 0.034186 TTAATGCTGAGGTGGCAGGG 60.034 55.000 0.00 0.00 43.15 4.45
75 76 1.925285 TAATGCTGAGGTGGCAGGGG 61.925 60.000 0.00 0.00 43.15 4.79
76 77 4.980592 TGCTGAGGTGGCAGGGGA 62.981 66.667 0.00 0.00 36.41 4.81
77 78 4.416738 GCTGAGGTGGCAGGGGAC 62.417 72.222 0.00 0.00 36.41 4.46
78 79 2.930019 CTGAGGTGGCAGGGGACA 60.930 66.667 0.00 0.00 32.26 4.02
79 80 2.204136 TGAGGTGGCAGGGGACAT 60.204 61.111 0.00 0.00 32.08 3.06
80 81 2.273449 GAGGTGGCAGGGGACATG 59.727 66.667 0.00 0.00 32.08 3.21
81 82 4.052518 AGGTGGCAGGGGACATGC 62.053 66.667 0.00 0.00 43.09 4.06
82 83 4.052518 GGTGGCAGGGGACATGCT 62.053 66.667 5.86 0.00 43.35 3.79
83 84 2.439156 GTGGCAGGGGACATGCTC 60.439 66.667 5.86 0.00 43.35 4.26
84 85 2.611800 TGGCAGGGGACATGCTCT 60.612 61.111 5.86 0.00 43.35 4.09
85 86 1.306911 TGGCAGGGGACATGCTCTA 60.307 57.895 5.86 0.00 43.35 2.43
86 87 0.913934 TGGCAGGGGACATGCTCTAA 60.914 55.000 5.86 0.00 43.35 2.10
87 88 0.255890 GGCAGGGGACATGCTCTAAA 59.744 55.000 5.86 0.00 43.35 1.85
88 89 1.673168 GCAGGGGACATGCTCTAAAG 58.327 55.000 0.00 0.00 40.59 1.85
89 90 1.210478 GCAGGGGACATGCTCTAAAGA 59.790 52.381 0.00 0.00 40.59 2.52
90 91 2.158696 GCAGGGGACATGCTCTAAAGAT 60.159 50.000 0.00 0.00 40.59 2.40
91 92 3.686691 GCAGGGGACATGCTCTAAAGATT 60.687 47.826 0.00 0.00 40.59 2.40
92 93 4.530875 CAGGGGACATGCTCTAAAGATTT 58.469 43.478 0.00 0.00 0.00 2.17
93 94 4.337555 CAGGGGACATGCTCTAAAGATTTG 59.662 45.833 0.00 0.00 0.00 2.32
94 95 4.018050 AGGGGACATGCTCTAAAGATTTGT 60.018 41.667 0.00 0.00 0.00 2.83
95 96 4.096984 GGGGACATGCTCTAAAGATTTGTG 59.903 45.833 0.00 0.00 0.00 3.33
96 97 4.096984 GGGACATGCTCTAAAGATTTGTGG 59.903 45.833 0.00 0.00 0.00 4.17
97 98 4.096984 GGACATGCTCTAAAGATTTGTGGG 59.903 45.833 0.00 0.00 0.00 4.61
98 99 4.666512 ACATGCTCTAAAGATTTGTGGGT 58.333 39.130 0.00 0.00 0.00 4.51
99 100 4.702131 ACATGCTCTAAAGATTTGTGGGTC 59.298 41.667 0.00 0.00 0.00 4.46
100 101 4.640771 TGCTCTAAAGATTTGTGGGTCT 57.359 40.909 0.00 0.00 0.00 3.85
101 102 4.985538 TGCTCTAAAGATTTGTGGGTCTT 58.014 39.130 0.00 0.00 36.29 3.01
102 103 6.121776 TGCTCTAAAGATTTGTGGGTCTTA 57.878 37.500 0.00 0.00 33.76 2.10
103 104 6.721318 TGCTCTAAAGATTTGTGGGTCTTAT 58.279 36.000 0.00 0.00 33.76 1.73
104 105 6.823689 TGCTCTAAAGATTTGTGGGTCTTATC 59.176 38.462 0.00 0.00 33.76 1.75
105 106 6.261158 GCTCTAAAGATTTGTGGGTCTTATCC 59.739 42.308 0.00 0.00 33.76 2.59
106 107 7.265599 TCTAAAGATTTGTGGGTCTTATCCA 57.734 36.000 0.00 0.00 33.76 3.41
107 108 7.695055 TCTAAAGATTTGTGGGTCTTATCCAA 58.305 34.615 0.00 0.00 35.86 3.53
108 109 6.590234 AAAGATTTGTGGGTCTTATCCAAC 57.410 37.500 0.00 0.00 35.86 3.77
109 110 4.261801 AGATTTGTGGGTCTTATCCAACG 58.738 43.478 0.00 0.00 34.31 4.10
110 111 1.816074 TTGTGGGTCTTATCCAACGC 58.184 50.000 0.00 0.00 34.31 4.84
111 112 0.981183 TGTGGGTCTTATCCAACGCT 59.019 50.000 0.00 0.00 34.31 5.07
112 113 1.066430 TGTGGGTCTTATCCAACGCTC 60.066 52.381 0.00 0.00 34.31 5.03
113 114 0.539986 TGGGTCTTATCCAACGCTCC 59.460 55.000 0.00 0.00 0.00 4.70
114 115 0.831307 GGGTCTTATCCAACGCTCCT 59.169 55.000 0.00 0.00 0.00 3.69
115 116 1.202545 GGGTCTTATCCAACGCTCCTC 60.203 57.143 0.00 0.00 0.00 3.71
116 117 1.480954 GGTCTTATCCAACGCTCCTCA 59.519 52.381 0.00 0.00 0.00 3.86
117 118 2.482142 GGTCTTATCCAACGCTCCTCAG 60.482 54.545 0.00 0.00 0.00 3.35
118 119 1.757118 TCTTATCCAACGCTCCTCAGG 59.243 52.381 0.00 0.00 0.00 3.86
119 120 1.482593 CTTATCCAACGCTCCTCAGGT 59.517 52.381 0.00 0.00 0.00 4.00
120 121 1.112113 TATCCAACGCTCCTCAGGTC 58.888 55.000 0.00 0.00 0.00 3.85
121 122 1.949847 ATCCAACGCTCCTCAGGTCG 61.950 60.000 6.58 6.58 0.00 4.79
122 123 2.651361 CAACGCTCCTCAGGTCGT 59.349 61.111 7.75 7.75 35.50 4.34
123 124 1.006102 CAACGCTCCTCAGGTCGTT 60.006 57.895 16.95 16.95 40.81 3.85
124 125 1.009389 CAACGCTCCTCAGGTCGTTC 61.009 60.000 18.94 0.00 39.34 3.95
125 126 2.202492 CGCTCCTCAGGTCGTTCG 60.202 66.667 0.00 0.00 0.00 3.95
126 127 2.963371 GCTCCTCAGGTCGTTCGT 59.037 61.111 0.00 0.00 0.00 3.85
127 128 1.444553 GCTCCTCAGGTCGTTCGTG 60.445 63.158 0.00 0.00 0.00 4.35
128 129 1.957562 CTCCTCAGGTCGTTCGTGT 59.042 57.895 0.00 0.00 34.10 4.49
129 130 0.387367 CTCCTCAGGTCGTTCGTGTG 60.387 60.000 0.00 0.00 34.10 3.82
130 131 1.372997 CCTCAGGTCGTTCGTGTGG 60.373 63.158 8.64 8.64 38.56 4.17
131 132 1.658114 CTCAGGTCGTTCGTGTGGA 59.342 57.895 0.00 0.00 34.10 4.02
132 133 0.387367 CTCAGGTCGTTCGTGTGGAG 60.387 60.000 0.00 0.00 34.10 3.86
133 134 1.372997 CAGGTCGTTCGTGTGGAGG 60.373 63.158 0.00 0.00 0.00 4.30
134 135 1.529948 AGGTCGTTCGTGTGGAGGA 60.530 57.895 0.00 0.00 0.00 3.71
135 136 1.080705 GGTCGTTCGTGTGGAGGAG 60.081 63.158 0.00 0.00 0.00 3.69
136 137 1.080705 GTCGTTCGTGTGGAGGAGG 60.081 63.158 0.00 0.00 0.00 4.30
137 138 1.529948 TCGTTCGTGTGGAGGAGGT 60.530 57.895 0.00 0.00 0.00 3.85
138 139 0.250858 TCGTTCGTGTGGAGGAGGTA 60.251 55.000 0.00 0.00 0.00 3.08
139 140 0.599558 CGTTCGTGTGGAGGAGGTAA 59.400 55.000 0.00 0.00 0.00 2.85
140 141 1.000060 CGTTCGTGTGGAGGAGGTAAA 60.000 52.381 0.00 0.00 0.00 2.01
141 142 2.546373 CGTTCGTGTGGAGGAGGTAAAA 60.546 50.000 0.00 0.00 0.00 1.52
142 143 3.469739 GTTCGTGTGGAGGAGGTAAAAA 58.530 45.455 0.00 0.00 0.00 1.94
202 203 8.472007 TTTTATGGGAAAGACACAATAACACT 57.528 30.769 0.00 0.00 34.70 3.55
203 204 8.472007 TTTATGGGAAAGACACAATAACACTT 57.528 30.769 0.00 0.00 34.70 3.16
204 205 6.575162 ATGGGAAAGACACAATAACACTTC 57.425 37.500 0.00 0.00 34.70 3.01
205 206 5.441500 TGGGAAAGACACAATAACACTTCA 58.558 37.500 0.00 0.00 0.00 3.02
206 207 5.298276 TGGGAAAGACACAATAACACTTCAC 59.702 40.000 0.00 0.00 0.00 3.18
207 208 5.440685 GGAAAGACACAATAACACTTCACG 58.559 41.667 0.00 0.00 0.00 4.35
208 209 5.418310 AAAGACACAATAACACTTCACGG 57.582 39.130 0.00 0.00 0.00 4.94
209 210 4.330944 AGACACAATAACACTTCACGGA 57.669 40.909 0.00 0.00 0.00 4.69
210 211 4.056050 AGACACAATAACACTTCACGGAC 58.944 43.478 0.00 0.00 0.00 4.79
211 212 3.135994 ACACAATAACACTTCACGGACC 58.864 45.455 0.00 0.00 0.00 4.46
212 213 2.156891 CACAATAACACTTCACGGACCG 59.843 50.000 13.61 13.61 0.00 4.79
213 214 2.224113 ACAATAACACTTCACGGACCGT 60.224 45.455 15.37 15.37 42.36 4.83
226 227 2.676342 ACGGACCGTGAAGAAATATTGC 59.324 45.455 21.02 0.00 39.18 3.56
227 228 2.031683 CGGACCGTGAAGAAATATTGCC 59.968 50.000 5.48 0.00 0.00 4.52
228 229 3.279434 GGACCGTGAAGAAATATTGCCT 58.721 45.455 0.00 0.00 0.00 4.75
229 230 3.694566 GGACCGTGAAGAAATATTGCCTT 59.305 43.478 3.76 3.76 0.00 4.35
230 231 4.438744 GGACCGTGAAGAAATATTGCCTTG 60.439 45.833 7.77 0.00 0.00 3.61
231 232 4.079253 ACCGTGAAGAAATATTGCCTTGT 58.921 39.130 7.77 0.00 0.00 3.16
232 233 4.082787 ACCGTGAAGAAATATTGCCTTGTG 60.083 41.667 7.77 0.19 0.00 3.33
233 234 4.414852 CGTGAAGAAATATTGCCTTGTGG 58.585 43.478 7.77 0.00 0.00 4.17
234 235 4.155826 CGTGAAGAAATATTGCCTTGTGGA 59.844 41.667 7.77 0.00 34.57 4.02
235 236 5.402398 GTGAAGAAATATTGCCTTGTGGAC 58.598 41.667 7.77 0.00 34.57 4.02
236 237 5.048083 GTGAAGAAATATTGCCTTGTGGACA 60.048 40.000 7.77 0.00 34.57 4.02
237 238 5.183713 TGAAGAAATATTGCCTTGTGGACAG 59.816 40.000 7.77 0.00 34.57 3.51
238 239 4.019174 AGAAATATTGCCTTGTGGACAGG 58.981 43.478 0.00 0.00 34.57 4.00
239 240 2.442236 ATATTGCCTTGTGGACAGGG 57.558 50.000 3.58 3.58 44.99 4.45
240 241 0.331278 TATTGCCTTGTGGACAGGGG 59.669 55.000 9.75 3.80 42.72 4.79
241 242 2.445492 ATTGCCTTGTGGACAGGGGG 62.445 60.000 9.75 1.59 42.72 5.40
255 256 3.680786 GGGGGACGCAAACAAGGC 61.681 66.667 0.00 0.00 42.57 4.35
273 274 6.761731 CAAGGCGATTGTTTATGTTCAAAA 57.238 33.333 0.00 0.00 33.95 2.44
274 275 7.171447 CAAGGCGATTGTTTATGTTCAAAAA 57.829 32.000 0.00 0.00 33.95 1.94
297 298 4.385358 AAAAGTCAAGGCGATTGTTTGT 57.615 36.364 0.00 0.00 40.05 2.83
298 299 3.354089 AAGTCAAGGCGATTGTTTGTG 57.646 42.857 0.00 0.00 40.05 3.33
316 317 2.122167 GTCGTCTGAGATCGGCCCT 61.122 63.158 0.00 0.00 0.00 5.19
317 318 0.818445 GTCGTCTGAGATCGGCCCTA 60.818 60.000 0.00 0.00 0.00 3.53
322 323 0.965439 CTGAGATCGGCCCTAGAAGG 59.035 60.000 0.00 0.00 34.30 3.46
332 334 2.552031 GCCCTAGAAGGAACGACATTC 58.448 52.381 0.00 0.00 37.67 2.67
362 364 3.565764 TTGGCCATTCTATGTCCTCAG 57.434 47.619 6.09 0.00 0.00 3.35
414 416 2.125391 GCAGCAGCATCGTCCTGA 60.125 61.111 0.00 0.00 41.58 3.86
416 418 1.300971 GCAGCAGCATCGTCCTGAAA 61.301 55.000 0.00 0.00 41.58 2.69
417 419 1.376543 CAGCAGCATCGTCCTGAAAT 58.623 50.000 0.00 0.00 32.03 2.17
418 420 1.741706 CAGCAGCATCGTCCTGAAATT 59.258 47.619 0.00 0.00 32.03 1.82
419 421 2.163010 CAGCAGCATCGTCCTGAAATTT 59.837 45.455 0.00 0.00 32.03 1.82
421 423 2.919229 GCAGCATCGTCCTGAAATTTTG 59.081 45.455 0.00 0.00 32.03 2.44
422 424 3.504863 CAGCATCGTCCTGAAATTTTGG 58.495 45.455 0.00 0.00 32.03 3.28
423 425 3.057315 CAGCATCGTCCTGAAATTTTGGT 60.057 43.478 9.89 0.00 32.03 3.67
424 426 4.155826 CAGCATCGTCCTGAAATTTTGGTA 59.844 41.667 9.89 1.02 32.03 3.25
425 427 4.156008 AGCATCGTCCTGAAATTTTGGTAC 59.844 41.667 9.89 0.00 0.00 3.34
430 432 4.377022 CGTCCTGAAATTTTGGTACTCACG 60.377 45.833 9.89 8.55 0.00 4.35
431 433 4.514066 GTCCTGAAATTTTGGTACTCACGT 59.486 41.667 9.89 0.00 0.00 4.49
432 434 5.008316 GTCCTGAAATTTTGGTACTCACGTT 59.992 40.000 9.89 0.00 0.00 3.99
434 436 6.766944 TCCTGAAATTTTGGTACTCACGTTTA 59.233 34.615 9.89 0.00 0.00 2.01
443 471 4.237724 GGTACTCACGTTTACCCTGTAAC 58.762 47.826 6.53 0.00 32.87 2.50
458 486 4.262463 CCCTGTAACTTAGAAGCACACTCA 60.262 45.833 0.00 0.00 0.00 3.41
481 509 1.535437 CCGAGTAGATGTACGTTGGCC 60.535 57.143 0.00 0.00 33.97 5.36
514 551 6.297694 TGCTTGTAATTTGAAATGTTTGGC 57.702 33.333 0.00 0.00 0.00 4.52
515 552 5.819379 TGCTTGTAATTTGAAATGTTTGGCA 59.181 32.000 0.00 0.00 0.00 4.92
516 553 6.135400 GCTTGTAATTTGAAATGTTTGGCAC 58.865 36.000 0.00 0.00 0.00 5.01
517 554 5.896922 TGTAATTTGAAATGTTTGGCACG 57.103 34.783 0.00 0.00 0.00 5.34
518 555 5.592054 TGTAATTTGAAATGTTTGGCACGA 58.408 33.333 0.00 0.00 0.00 4.35
519 556 5.689514 TGTAATTTGAAATGTTTGGCACGAG 59.310 36.000 0.00 0.00 0.00 4.18
520 557 3.791973 TTTGAAATGTTTGGCACGAGT 57.208 38.095 0.00 0.00 0.00 4.18
521 558 2.772568 TGAAATGTTTGGCACGAGTG 57.227 45.000 0.00 0.00 0.00 3.51
522 559 1.336440 TGAAATGTTTGGCACGAGTGG 59.664 47.619 5.32 0.00 0.00 4.00
576 613 0.828677 ATCGCGTAAACCTAAGGGCT 59.171 50.000 5.77 0.00 35.63 5.19
577 614 0.108520 TCGCGTAAACCTAAGGGCTG 60.109 55.000 5.77 0.00 35.63 4.85
604 642 2.722094 TGCTTTTGTCTTGTCTGGTGT 58.278 42.857 0.00 0.00 0.00 4.16
613 651 0.182537 TTGTCTGGTGTGTCCTTGGG 59.817 55.000 0.00 0.00 37.07 4.12
670 711 5.470098 CACCAAATTATCTATCACCTTCCGG 59.530 44.000 0.00 0.00 0.00 5.14
684 725 4.227134 CCGGCCTCGATGTCTGGG 62.227 72.222 0.00 0.00 39.00 4.45
685 726 4.227134 CGGCCTCGATGTCTGGGG 62.227 72.222 0.00 0.00 39.00 4.96
686 727 3.083997 GGCCTCGATGTCTGGGGT 61.084 66.667 0.00 0.00 0.00 4.95
698 739 1.630878 GTCTGGGGTGGTGAATCTTCT 59.369 52.381 0.00 0.00 0.00 2.85
699 740 1.630369 TCTGGGGTGGTGAATCTTCTG 59.370 52.381 0.00 0.00 0.00 3.02
901 953 1.957177 AGTTCAGTCGACTTGCTCAGA 59.043 47.619 17.26 6.10 0.00 3.27
902 954 2.030363 AGTTCAGTCGACTTGCTCAGAG 60.030 50.000 17.26 1.73 0.00 3.35
906 958 0.796491 GTCGACTTGCTCAGAGCTCG 60.796 60.000 23.15 21.95 42.97 5.03
907 959 1.515952 CGACTTGCTCAGAGCTCGG 60.516 63.158 23.15 7.99 42.97 4.63
916 968 0.331954 TCAGAGCTCGGTACCCTCTT 59.668 55.000 14.52 0.00 33.89 2.85
931 983 2.830923 CCCTCTTCTGTCATCTCAGTGT 59.169 50.000 0.00 0.00 36.85 3.55
953 1005 1.001974 TCCACTTCCACATTCTGGTCG 59.998 52.381 0.00 0.00 41.52 4.79
985 1041 1.691976 TCACTTGGAGTGTGTACCAGG 59.308 52.381 7.85 0.00 46.03 4.45
997 1053 1.112113 GTACCAGGAGATCGAGGCAA 58.888 55.000 0.00 0.00 0.00 4.52
1178 1261 3.450457 CAGATGGTGAGCCTACTTCTCTT 59.550 47.826 0.00 0.00 35.27 2.85
1248 1338 0.035915 TTTGGCTACGCTGGCATGTA 60.036 50.000 5.42 0.00 42.07 2.29
1755 1845 2.697761 GGCTACAGACGACCGAGCA 61.698 63.158 0.00 0.00 34.76 4.26
1801 1895 1.508545 CATGCACCGACGAGAGACT 59.491 57.895 0.00 0.00 0.00 3.24
1802 1896 0.799917 CATGCACCGACGAGAGACTG 60.800 60.000 0.00 0.00 0.00 3.51
1803 1897 2.505118 GCACCGACGAGAGACTGC 60.505 66.667 0.00 0.00 0.00 4.40
1804 1898 2.202362 CACCGACGAGAGACTGCG 60.202 66.667 0.00 0.00 0.00 5.18
1805 1899 4.104417 ACCGACGAGAGACTGCGC 62.104 66.667 0.00 0.00 0.00 6.09
1809 1903 2.745100 ACGAGAGACTGCGCCGTA 60.745 61.111 3.84 0.00 0.00 4.02
1813 1907 1.699656 GAGAGACTGCGCCGTACGTA 61.700 60.000 15.21 0.00 46.11 3.57
1815 1909 1.975363 GAGACTGCGCCGTACGTACT 61.975 60.000 22.55 2.57 46.11 2.73
1855 1958 4.154015 CCATTTCTCGTATTTGTGCAGTCA 59.846 41.667 0.00 0.00 0.00 3.41
1921 2024 1.202382 GCGCTATTCTCTGGGTACGTT 60.202 52.381 0.00 0.00 0.00 3.99
1925 2028 1.183549 ATTCTCTGGGTACGTTCGCT 58.816 50.000 10.44 0.00 0.00 4.93
1927 2030 0.524862 TCTCTGGGTACGTTCGCTTC 59.475 55.000 10.44 0.00 0.00 3.86
1928 2031 0.458025 CTCTGGGTACGTTCGCTTCC 60.458 60.000 10.44 0.00 0.00 3.46
1969 2072 6.205853 TGTTGTTTAACTTTACGGCATGATCT 59.794 34.615 0.00 0.00 37.68 2.75
1972 2075 8.325421 TGTTTAACTTTACGGCATGATCTTTA 57.675 30.769 0.00 0.00 0.00 1.85
1995 2138 3.615368 CGTACGCACGTTTGGTCA 58.385 55.556 0.52 0.00 43.31 4.02
2206 2353 0.744771 GACCGGGCTTGATGAACTCC 60.745 60.000 6.32 0.00 0.00 3.85
2228 2375 3.734776 AGTAAATTAAGAACCGTGCGC 57.265 42.857 0.00 0.00 0.00 6.09
2229 2376 2.093152 AGTAAATTAAGAACCGTGCGCG 59.907 45.455 13.88 13.88 37.95 6.86
2230 2377 0.453782 AAATTAAGAACCGTGCGCGC 60.454 50.000 27.26 27.26 36.67 6.86
2231 2378 2.557265 AATTAAGAACCGTGCGCGCG 62.557 55.000 34.70 34.70 36.67 6.86
2247 2394 1.410737 CGCGGTACACATGTTCGGAG 61.411 60.000 0.00 0.00 0.00 4.63
2287 2434 5.547276 AGAGAGGAGCAATAATTGGAGCTAT 59.453 40.000 0.00 0.00 37.48 2.97
2316 2466 8.306313 TGAGTGTATGGTGTGATTACTATCTT 57.694 34.615 0.00 0.00 0.00 2.40
2438 2590 3.032459 TGCCTGGTTGGTATATACGTGA 58.968 45.455 6.79 0.00 38.35 4.35
2472 2624 2.531912 CGAGGCGATAATCGATATGTGC 59.468 50.000 0.00 0.92 43.74 4.57
2483 2635 8.842942 ATAATCGATATGTGCGTATCTTACTG 57.157 34.615 0.00 0.00 0.00 2.74
2493 2647 4.982295 TGCGTATCTTACTGTCATATGTGC 59.018 41.667 1.90 0.00 0.00 4.57
2494 2648 4.982295 GCGTATCTTACTGTCATATGTGCA 59.018 41.667 1.90 2.89 0.00 4.57
2495 2649 5.107837 GCGTATCTTACTGTCATATGTGCAC 60.108 44.000 10.75 10.75 0.00 4.57
2496 2650 5.115622 CGTATCTTACTGTCATATGTGCACG 59.884 44.000 13.13 0.00 0.00 5.34
2497 2651 4.450082 TCTTACTGTCATATGTGCACGT 57.550 40.909 17.19 17.19 0.00 4.49
2498 2652 4.421058 TCTTACTGTCATATGTGCACGTC 58.579 43.478 16.44 1.25 0.00 4.34
2499 2653 2.010145 ACTGTCATATGTGCACGTCC 57.990 50.000 16.44 3.03 0.00 4.79
2500 2654 1.275010 ACTGTCATATGTGCACGTCCA 59.725 47.619 16.44 7.56 0.00 4.02
2501 2655 2.289382 ACTGTCATATGTGCACGTCCAA 60.289 45.455 16.44 0.00 0.00 3.53
2502 2656 2.938451 CTGTCATATGTGCACGTCCAAT 59.062 45.455 16.44 3.06 0.00 3.16
2503 2657 3.342719 TGTCATATGTGCACGTCCAATT 58.657 40.909 16.44 0.00 0.00 2.32
2504 2658 3.755905 TGTCATATGTGCACGTCCAATTT 59.244 39.130 16.44 0.00 0.00 1.82
2505 2659 4.217334 TGTCATATGTGCACGTCCAATTTT 59.783 37.500 16.44 0.00 0.00 1.82
2506 2660 5.160641 GTCATATGTGCACGTCCAATTTTT 58.839 37.500 16.44 0.00 0.00 1.94
2535 2689 0.653636 TTTTTGCGAGACACGTCCAC 59.346 50.000 0.00 0.00 44.60 4.02
2549 2703 6.018180 AGACACGTCCACTTTCTTTATTGTTC 60.018 38.462 0.00 0.00 0.00 3.18
2550 2704 5.587043 ACACGTCCACTTTCTTTATTGTTCA 59.413 36.000 0.00 0.00 0.00 3.18
2552 2706 7.442969 ACACGTCCACTTTCTTTATTGTTCATA 59.557 33.333 0.00 0.00 0.00 2.15
2554 2708 8.665685 ACGTCCACTTTCTTTATTGTTCATATC 58.334 33.333 0.00 0.00 0.00 1.63
2555 2709 8.664798 CGTCCACTTTCTTTATTGTTCATATCA 58.335 33.333 0.00 0.00 0.00 2.15
2563 2717 8.862325 TCTTTATTGTTCATATCAAGTGTGGT 57.138 30.769 0.00 0.00 0.00 4.16
2564 2718 8.946085 TCTTTATTGTTCATATCAAGTGTGGTC 58.054 33.333 0.00 0.00 0.00 4.02
2565 2719 8.628630 TTTATTGTTCATATCAAGTGTGGTCA 57.371 30.769 0.00 0.00 0.00 4.02
2566 2720 8.628630 TTATTGTTCATATCAAGTGTGGTCAA 57.371 30.769 0.00 0.00 0.00 3.18
2567 2721 6.951062 TTGTTCATATCAAGTGTGGTCAAA 57.049 33.333 0.00 0.00 0.00 2.69
2568 2722 6.951062 TGTTCATATCAAGTGTGGTCAAAA 57.049 33.333 0.00 0.00 0.00 2.44
2572 2726 9.906660 GTTCATATCAAGTGTGGTCAAAATTTA 57.093 29.630 0.00 0.00 0.00 1.40
2701 2876 0.389166 GTGGGTGACAGAGCTTCTCG 60.389 60.000 0.00 0.00 35.36 4.04
2703 2878 1.446966 GGTGACAGAGCTTCTCGCC 60.447 63.158 0.00 0.00 40.39 5.54
2751 2926 3.253061 TGATGGGGTTGGTCGGCA 61.253 61.111 0.00 0.00 0.00 5.69
2825 3001 1.620822 GGAGTTGTGGTTGCATCCTT 58.379 50.000 14.81 0.00 0.00 3.36
2976 3157 4.461781 CCAGGCATGAATATCCCTTCATTC 59.538 45.833 0.00 0.00 41.89 2.67
3026 3212 1.533756 CGCTCACGGCCCATAAATTTG 60.534 52.381 0.00 0.00 37.74 2.32
3092 3279 7.121020 ACATGCCCACAATTTTATTTTCCATTC 59.879 33.333 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.365265 CAGCACAAACGAGCCCCC 61.365 66.667 0.00 0.00 0.00 5.40
14 15 2.281484 TCAGCACAAACGAGCCCC 60.281 61.111 0.00 0.00 0.00 5.80
15 16 2.328099 CCTCAGCACAAACGAGCCC 61.328 63.158 0.00 0.00 0.00 5.19
16 17 0.884704 TTCCTCAGCACAAACGAGCC 60.885 55.000 0.00 0.00 0.00 4.70
17 18 1.135859 CATTCCTCAGCACAAACGAGC 60.136 52.381 0.00 0.00 0.00 5.03
18 19 2.158449 GTCATTCCTCAGCACAAACGAG 59.842 50.000 0.00 0.00 0.00 4.18
19 20 2.143122 GTCATTCCTCAGCACAAACGA 58.857 47.619 0.00 0.00 0.00 3.85
20 21 1.197721 GGTCATTCCTCAGCACAAACG 59.802 52.381 0.00 0.00 0.00 3.60
21 22 1.541588 GGGTCATTCCTCAGCACAAAC 59.458 52.381 0.00 0.00 36.25 2.93
22 23 1.881925 CGGGTCATTCCTCAGCACAAA 60.882 52.381 0.00 0.00 36.25 2.83
23 24 0.321564 CGGGTCATTCCTCAGCACAA 60.322 55.000 0.00 0.00 36.25 3.33
24 25 1.191489 TCGGGTCATTCCTCAGCACA 61.191 55.000 0.00 0.00 36.25 4.57
25 26 0.179000 ATCGGGTCATTCCTCAGCAC 59.821 55.000 0.00 0.00 36.25 4.40
26 27 0.465705 GATCGGGTCATTCCTCAGCA 59.534 55.000 0.00 0.00 36.25 4.41
27 28 0.598680 CGATCGGGTCATTCCTCAGC 60.599 60.000 7.38 0.00 36.25 4.26
28 29 1.032794 TCGATCGGGTCATTCCTCAG 58.967 55.000 16.41 0.00 36.25 3.35
29 30 1.136305 GTTCGATCGGGTCATTCCTCA 59.864 52.381 16.41 0.00 36.25 3.86
30 31 1.854227 GTTCGATCGGGTCATTCCTC 58.146 55.000 16.41 0.00 36.25 3.71
31 32 0.102481 CGTTCGATCGGGTCATTCCT 59.898 55.000 16.41 0.00 36.25 3.36
32 33 0.101759 TCGTTCGATCGGGTCATTCC 59.898 55.000 16.41 0.00 0.00 3.01
33 34 2.135664 ATCGTTCGATCGGGTCATTC 57.864 50.000 16.41 0.00 0.00 2.67
34 35 2.100916 AGAATCGTTCGATCGGGTCATT 59.899 45.455 16.41 8.91 34.02 2.57
35 36 1.681793 AGAATCGTTCGATCGGGTCAT 59.318 47.619 16.41 0.00 34.02 3.06
36 37 1.100510 AGAATCGTTCGATCGGGTCA 58.899 50.000 16.41 0.00 34.02 4.02
37 38 2.205307 AAGAATCGTTCGATCGGGTC 57.795 50.000 16.41 12.32 34.02 4.46
38 39 3.788333 TTAAGAATCGTTCGATCGGGT 57.212 42.857 16.41 4.24 34.02 5.28
39 40 3.120991 GCATTAAGAATCGTTCGATCGGG 60.121 47.826 16.41 5.34 34.02 5.14
40 41 3.736252 AGCATTAAGAATCGTTCGATCGG 59.264 43.478 16.41 0.00 34.02 4.18
41 42 4.441087 TCAGCATTAAGAATCGTTCGATCG 59.559 41.667 9.36 9.36 34.02 3.69
42 43 5.107683 CCTCAGCATTAAGAATCGTTCGATC 60.108 44.000 8.14 3.10 34.02 3.69
43 44 4.747108 CCTCAGCATTAAGAATCGTTCGAT 59.253 41.667 1.68 1.68 34.02 3.59
44 45 4.112634 CCTCAGCATTAAGAATCGTTCGA 58.887 43.478 0.00 0.00 34.02 3.71
45 46 3.865745 ACCTCAGCATTAAGAATCGTTCG 59.134 43.478 0.00 0.00 34.02 3.95
46 47 4.034510 CCACCTCAGCATTAAGAATCGTTC 59.965 45.833 0.00 0.00 0.00 3.95
47 48 3.941483 CCACCTCAGCATTAAGAATCGTT 59.059 43.478 0.00 0.00 0.00 3.85
48 49 3.535561 CCACCTCAGCATTAAGAATCGT 58.464 45.455 0.00 0.00 0.00 3.73
49 50 2.289002 GCCACCTCAGCATTAAGAATCG 59.711 50.000 0.00 0.00 0.00 3.34
50 51 3.282021 TGCCACCTCAGCATTAAGAATC 58.718 45.455 0.00 0.00 34.69 2.52
51 52 3.285484 CTGCCACCTCAGCATTAAGAAT 58.715 45.455 0.00 0.00 40.04 2.40
52 53 2.618816 CCTGCCACCTCAGCATTAAGAA 60.619 50.000 0.00 0.00 40.04 2.52
53 54 1.065199 CCTGCCACCTCAGCATTAAGA 60.065 52.381 0.00 0.00 40.04 2.10
54 55 1.386533 CCTGCCACCTCAGCATTAAG 58.613 55.000 0.00 0.00 40.04 1.85
55 56 0.034186 CCCTGCCACCTCAGCATTAA 60.034 55.000 0.00 0.00 40.04 1.40
56 57 1.609239 CCCTGCCACCTCAGCATTA 59.391 57.895 0.00 0.00 40.04 1.90
57 58 2.357836 CCCTGCCACCTCAGCATT 59.642 61.111 0.00 0.00 40.04 3.56
58 59 3.736224 CCCCTGCCACCTCAGCAT 61.736 66.667 0.00 0.00 40.04 3.79
59 60 4.980592 TCCCCTGCCACCTCAGCA 62.981 66.667 0.00 0.00 38.82 4.41
60 61 4.416738 GTCCCCTGCCACCTCAGC 62.417 72.222 0.00 0.00 32.87 4.26
61 62 2.304056 ATGTCCCCTGCCACCTCAG 61.304 63.158 0.00 0.00 0.00 3.35
62 63 2.204136 ATGTCCCCTGCCACCTCA 60.204 61.111 0.00 0.00 0.00 3.86
63 64 2.273449 CATGTCCCCTGCCACCTC 59.727 66.667 0.00 0.00 0.00 3.85
64 65 4.052518 GCATGTCCCCTGCCACCT 62.053 66.667 0.00 0.00 33.44 4.00
65 66 4.052518 AGCATGTCCCCTGCCACC 62.053 66.667 0.00 0.00 40.56 4.61
66 67 1.626356 TAGAGCATGTCCCCTGCCAC 61.626 60.000 0.00 0.00 40.56 5.01
67 68 0.913934 TTAGAGCATGTCCCCTGCCA 60.914 55.000 0.00 0.00 40.56 4.92
68 69 0.255890 TTTAGAGCATGTCCCCTGCC 59.744 55.000 0.00 0.00 40.56 4.85
69 70 1.210478 TCTTTAGAGCATGTCCCCTGC 59.790 52.381 0.00 0.00 39.97 4.85
70 71 3.853355 ATCTTTAGAGCATGTCCCCTG 57.147 47.619 0.00 0.00 0.00 4.45
71 72 4.018050 ACAAATCTTTAGAGCATGTCCCCT 60.018 41.667 0.00 0.00 0.00 4.79
72 73 4.096984 CACAAATCTTTAGAGCATGTCCCC 59.903 45.833 0.00 0.00 0.00 4.81
73 74 4.096984 CCACAAATCTTTAGAGCATGTCCC 59.903 45.833 0.00 0.00 0.00 4.46
74 75 4.096984 CCCACAAATCTTTAGAGCATGTCC 59.903 45.833 0.00 0.00 0.00 4.02
75 76 4.702131 ACCCACAAATCTTTAGAGCATGTC 59.298 41.667 0.00 0.00 0.00 3.06
76 77 4.666512 ACCCACAAATCTTTAGAGCATGT 58.333 39.130 0.00 0.00 0.00 3.21
77 78 4.946157 AGACCCACAAATCTTTAGAGCATG 59.054 41.667 0.00 0.00 0.00 4.06
78 79 5.184892 AGACCCACAAATCTTTAGAGCAT 57.815 39.130 0.00 0.00 0.00 3.79
79 80 4.640771 AGACCCACAAATCTTTAGAGCA 57.359 40.909 0.00 0.00 0.00 4.26
80 81 6.261158 GGATAAGACCCACAAATCTTTAGAGC 59.739 42.308 0.00 0.00 36.56 4.09
81 82 7.338710 TGGATAAGACCCACAAATCTTTAGAG 58.661 38.462 0.00 0.00 36.56 2.43
82 83 7.265599 TGGATAAGACCCACAAATCTTTAGA 57.734 36.000 0.00 0.00 36.56 2.10
83 84 7.414098 CGTTGGATAAGACCCACAAATCTTTAG 60.414 40.741 0.00 0.00 36.56 1.85
84 85 6.373216 CGTTGGATAAGACCCACAAATCTTTA 59.627 38.462 0.00 0.00 36.56 1.85
85 86 5.183140 CGTTGGATAAGACCCACAAATCTTT 59.817 40.000 0.00 0.00 36.56 2.52
86 87 4.700213 CGTTGGATAAGACCCACAAATCTT 59.300 41.667 0.00 0.00 38.67 2.40
87 88 4.261801 CGTTGGATAAGACCCACAAATCT 58.738 43.478 0.00 0.00 32.58 2.40
88 89 3.181500 GCGTTGGATAAGACCCACAAATC 60.181 47.826 0.00 0.00 32.58 2.17
89 90 2.752903 GCGTTGGATAAGACCCACAAAT 59.247 45.455 0.00 0.00 32.58 2.32
90 91 2.156098 GCGTTGGATAAGACCCACAAA 58.844 47.619 0.00 0.00 32.58 2.83
91 92 1.349688 AGCGTTGGATAAGACCCACAA 59.650 47.619 0.00 0.00 32.58 3.33
92 93 0.981183 AGCGTTGGATAAGACCCACA 59.019 50.000 0.00 0.00 32.58 4.17
93 94 1.653151 GAGCGTTGGATAAGACCCAC 58.347 55.000 0.00 0.00 32.58 4.61
94 95 0.539986 GGAGCGTTGGATAAGACCCA 59.460 55.000 0.00 0.00 0.00 4.51
95 96 0.831307 AGGAGCGTTGGATAAGACCC 59.169 55.000 0.00 0.00 0.00 4.46
96 97 1.480954 TGAGGAGCGTTGGATAAGACC 59.519 52.381 0.00 0.00 0.00 3.85
97 98 2.482142 CCTGAGGAGCGTTGGATAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
98 99 1.757118 CCTGAGGAGCGTTGGATAAGA 59.243 52.381 0.00 0.00 0.00 2.10
99 100 1.482593 ACCTGAGGAGCGTTGGATAAG 59.517 52.381 4.99 0.00 0.00 1.73
100 101 1.480954 GACCTGAGGAGCGTTGGATAA 59.519 52.381 4.99 0.00 0.00 1.75
101 102 1.112113 GACCTGAGGAGCGTTGGATA 58.888 55.000 4.99 0.00 0.00 2.59
102 103 1.901085 GACCTGAGGAGCGTTGGAT 59.099 57.895 4.99 0.00 0.00 3.41
103 104 2.636412 CGACCTGAGGAGCGTTGGA 61.636 63.158 4.99 0.00 0.00 3.53
104 105 2.125912 CGACCTGAGGAGCGTTGG 60.126 66.667 4.99 0.00 0.00 3.77
105 106 1.006102 AACGACCTGAGGAGCGTTG 60.006 57.895 26.39 4.64 41.96 4.10
106 107 1.289380 GAACGACCTGAGGAGCGTT 59.711 57.895 26.96 26.96 44.30 4.84
107 108 2.963371 GAACGACCTGAGGAGCGT 59.037 61.111 15.87 15.87 38.36 5.07
108 109 2.202492 CGAACGACCTGAGGAGCG 60.202 66.667 4.99 11.33 0.00 5.03
109 110 1.444553 CACGAACGACCTGAGGAGC 60.445 63.158 4.99 0.00 0.00 4.70
110 111 0.387367 CACACGAACGACCTGAGGAG 60.387 60.000 4.99 0.63 0.00 3.69
111 112 1.658114 CACACGAACGACCTGAGGA 59.342 57.895 4.99 0.00 0.00 3.71
112 113 1.372997 CCACACGAACGACCTGAGG 60.373 63.158 0.00 0.00 0.00 3.86
113 114 0.387367 CTCCACACGAACGACCTGAG 60.387 60.000 0.14 0.00 0.00 3.35
114 115 1.658114 CTCCACACGAACGACCTGA 59.342 57.895 0.14 0.00 0.00 3.86
115 116 1.372997 CCTCCACACGAACGACCTG 60.373 63.158 0.14 0.00 0.00 4.00
116 117 1.524863 CTCCTCCACACGAACGACCT 61.525 60.000 0.14 0.00 0.00 3.85
117 118 1.080705 CTCCTCCACACGAACGACC 60.081 63.158 0.14 0.00 0.00 4.79
118 119 1.080705 CCTCCTCCACACGAACGAC 60.081 63.158 0.14 0.00 0.00 4.34
119 120 0.250858 TACCTCCTCCACACGAACGA 60.251 55.000 0.14 0.00 0.00 3.85
120 121 0.599558 TTACCTCCTCCACACGAACG 59.400 55.000 0.00 0.00 0.00 3.95
121 122 2.825861 TTTACCTCCTCCACACGAAC 57.174 50.000 0.00 0.00 0.00 3.95
122 123 3.842007 TTTTTACCTCCTCCACACGAA 57.158 42.857 0.00 0.00 0.00 3.85
176 177 8.919145 AGTGTTATTGTGTCTTTCCCATAAAAA 58.081 29.630 0.00 0.00 0.00 1.94
177 178 8.472007 AGTGTTATTGTGTCTTTCCCATAAAA 57.528 30.769 0.00 0.00 0.00 1.52
178 179 8.472007 AAGTGTTATTGTGTCTTTCCCATAAA 57.528 30.769 0.00 0.00 0.00 1.40
179 180 7.721842 TGAAGTGTTATTGTGTCTTTCCCATAA 59.278 33.333 0.00 0.00 0.00 1.90
180 181 7.174253 GTGAAGTGTTATTGTGTCTTTCCCATA 59.826 37.037 0.00 0.00 0.00 2.74
181 182 6.016276 GTGAAGTGTTATTGTGTCTTTCCCAT 60.016 38.462 0.00 0.00 0.00 4.00
182 183 5.298276 GTGAAGTGTTATTGTGTCTTTCCCA 59.702 40.000 0.00 0.00 0.00 4.37
183 184 5.560183 CGTGAAGTGTTATTGTGTCTTTCCC 60.560 44.000 0.00 0.00 0.00 3.97
184 185 5.440685 CGTGAAGTGTTATTGTGTCTTTCC 58.559 41.667 0.00 0.00 0.00 3.13
185 186 5.235616 TCCGTGAAGTGTTATTGTGTCTTTC 59.764 40.000 0.00 0.00 0.00 2.62
186 187 5.007332 GTCCGTGAAGTGTTATTGTGTCTTT 59.993 40.000 0.00 0.00 0.00 2.52
187 188 4.510340 GTCCGTGAAGTGTTATTGTGTCTT 59.490 41.667 0.00 0.00 0.00 3.01
188 189 4.056050 GTCCGTGAAGTGTTATTGTGTCT 58.944 43.478 0.00 0.00 0.00 3.41
189 190 3.185797 GGTCCGTGAAGTGTTATTGTGTC 59.814 47.826 0.00 0.00 0.00 3.67
190 191 3.135994 GGTCCGTGAAGTGTTATTGTGT 58.864 45.455 0.00 0.00 0.00 3.72
191 192 2.156891 CGGTCCGTGAAGTGTTATTGTG 59.843 50.000 2.08 0.00 0.00 3.33
192 193 2.224113 ACGGTCCGTGAAGTGTTATTGT 60.224 45.455 18.08 0.00 39.18 2.71
193 194 2.409975 ACGGTCCGTGAAGTGTTATTG 58.590 47.619 18.08 0.00 39.18 1.90
194 195 2.825861 ACGGTCCGTGAAGTGTTATT 57.174 45.000 18.08 0.00 39.18 1.40
205 206 2.676342 GCAATATTTCTTCACGGTCCGT 59.324 45.455 12.23 12.23 42.36 4.69
206 207 2.031683 GGCAATATTTCTTCACGGTCCG 59.968 50.000 10.48 10.48 0.00 4.79
207 208 3.279434 AGGCAATATTTCTTCACGGTCC 58.721 45.455 0.00 0.00 0.00 4.46
208 209 4.156008 ACAAGGCAATATTTCTTCACGGTC 59.844 41.667 0.00 0.00 0.00 4.79
209 210 4.079253 ACAAGGCAATATTTCTTCACGGT 58.921 39.130 0.00 0.00 0.00 4.83
210 211 4.414852 CACAAGGCAATATTTCTTCACGG 58.585 43.478 0.00 0.00 0.00 4.94
211 212 4.155826 TCCACAAGGCAATATTTCTTCACG 59.844 41.667 0.00 0.00 33.74 4.35
212 213 5.048083 TGTCCACAAGGCAATATTTCTTCAC 60.048 40.000 0.00 0.00 33.74 3.18
213 214 5.076182 TGTCCACAAGGCAATATTTCTTCA 58.924 37.500 0.00 0.00 33.74 3.02
214 215 5.393461 CCTGTCCACAAGGCAATATTTCTTC 60.393 44.000 0.00 0.00 33.74 2.87
215 216 4.463891 CCTGTCCACAAGGCAATATTTCTT 59.536 41.667 0.00 0.00 33.74 2.52
216 217 4.019174 CCTGTCCACAAGGCAATATTTCT 58.981 43.478 0.00 0.00 33.74 2.52
217 218 3.131046 CCCTGTCCACAAGGCAATATTTC 59.869 47.826 0.00 0.00 33.74 2.17
218 219 3.099141 CCCTGTCCACAAGGCAATATTT 58.901 45.455 0.00 0.00 33.74 1.40
219 220 2.624029 CCCCTGTCCACAAGGCAATATT 60.624 50.000 0.00 0.00 33.74 1.28
220 221 1.063717 CCCCTGTCCACAAGGCAATAT 60.064 52.381 0.00 0.00 33.74 1.28
221 222 0.331278 CCCCTGTCCACAAGGCAATA 59.669 55.000 0.00 0.00 33.74 1.90
222 223 1.077265 CCCCTGTCCACAAGGCAAT 59.923 57.895 0.00 0.00 33.74 3.56
223 224 2.520458 CCCCTGTCCACAAGGCAA 59.480 61.111 0.00 0.00 33.74 4.52
224 225 3.579302 CCCCCTGTCCACAAGGCA 61.579 66.667 0.00 0.00 33.74 4.75
238 239 3.680786 GCCTTGTTTGCGTCCCCC 61.681 66.667 0.00 0.00 0.00 5.40
239 240 4.038080 CGCCTTGTTTGCGTCCCC 62.038 66.667 0.00 0.00 46.59 4.81
241 242 3.330955 ACAATCGCCTTGTTTGCGTCC 62.331 52.381 4.48 0.00 45.98 4.79
242 243 0.040425 ACAATCGCCTTGTTTGCGTC 60.040 50.000 4.48 0.00 45.98 5.19
243 244 2.029743 ACAATCGCCTTGTTTGCGT 58.970 47.368 4.48 0.00 45.98 5.24
244 245 4.942090 ACAATCGCCTTGTTTGCG 57.058 50.000 0.00 0.00 45.98 4.85
250 251 6.761731 TTTTGAACATAAACAATCGCCTTG 57.238 33.333 0.00 0.00 40.90 3.61
275 276 4.566360 CACAAACAATCGCCTTGACTTTTT 59.434 37.500 4.80 0.00 38.29 1.94
276 277 4.111916 CACAAACAATCGCCTTGACTTTT 58.888 39.130 4.80 0.00 38.29 2.27
277 278 3.130340 ACACAAACAATCGCCTTGACTTT 59.870 39.130 4.80 0.00 38.29 2.66
278 279 2.687935 ACACAAACAATCGCCTTGACTT 59.312 40.909 4.80 0.00 38.29 3.01
279 280 2.290641 GACACAAACAATCGCCTTGACT 59.709 45.455 4.80 0.00 38.29 3.41
280 281 2.650608 GACACAAACAATCGCCTTGAC 58.349 47.619 4.80 0.00 38.29 3.18
281 282 1.262950 CGACACAAACAATCGCCTTGA 59.737 47.619 4.80 0.00 38.29 3.02
297 298 2.415608 GGGCCGATCTCAGACGACA 61.416 63.158 0.00 0.00 0.00 4.35
298 299 0.818445 TAGGGCCGATCTCAGACGAC 60.818 60.000 0.00 0.00 0.00 4.34
332 334 6.157201 ACATAGAATGGCCAAATGGTACAGG 61.157 44.000 10.96 0.00 36.55 4.00
362 364 4.338964 TGTCCATATGTTCATGGTGATTGC 59.661 41.667 1.24 0.00 44.98 3.56
385 387 1.440893 CTGCTGCAGAGCTACCGAT 59.559 57.895 24.88 0.00 46.39 4.18
388 390 2.267006 TGCTGCTGCAGAGCTACC 59.733 61.111 32.30 14.10 46.39 3.18
403 405 3.575965 ACCAAAATTTCAGGACGATGC 57.424 42.857 14.58 0.00 0.00 3.91
425 427 6.017400 TCTAAGTTACAGGGTAAACGTGAG 57.983 41.667 0.00 0.00 38.32 3.51
430 432 5.993441 TGTGCTTCTAAGTTACAGGGTAAAC 59.007 40.000 0.00 0.00 0.00 2.01
431 433 5.993441 GTGTGCTTCTAAGTTACAGGGTAAA 59.007 40.000 0.00 0.00 0.00 2.01
432 434 5.306160 AGTGTGCTTCTAAGTTACAGGGTAA 59.694 40.000 3.31 0.00 0.00 2.85
434 436 3.646637 AGTGTGCTTCTAAGTTACAGGGT 59.353 43.478 3.31 0.00 0.00 4.34
443 471 3.849911 TCGGATTGAGTGTGCTTCTAAG 58.150 45.455 0.00 0.00 0.00 2.18
458 486 3.490419 GCCAACGTACATCTACTCGGATT 60.490 47.826 0.00 0.00 0.00 3.01
481 509 6.164408 TCAAATTACAAGCATGACGTACAG 57.836 37.500 0.00 0.00 0.00 2.74
514 551 1.645034 CCTCAGCATTACCACTCGTG 58.355 55.000 0.00 0.00 0.00 4.35
515 552 0.108138 GCCTCAGCATTACCACTCGT 60.108 55.000 0.00 0.00 39.53 4.18
516 553 0.108186 TGCCTCAGCATTACCACTCG 60.108 55.000 0.00 0.00 46.52 4.18
517 554 3.861341 TGCCTCAGCATTACCACTC 57.139 52.632 0.00 0.00 46.52 3.51
576 613 2.689471 ACAAGACAAAAGCATGCACTCA 59.311 40.909 21.98 0.00 0.00 3.41
577 614 3.004106 AGACAAGACAAAAGCATGCACTC 59.996 43.478 21.98 6.24 0.00 3.51
604 642 1.415672 AAGCGAGAACCCCAAGGACA 61.416 55.000 0.00 0.00 36.73 4.02
613 651 3.003480 AGATTAACAGCAAGCGAGAACC 58.997 45.455 0.00 0.00 0.00 3.62
670 711 2.187946 CACCCCAGACATCGAGGC 59.812 66.667 0.00 0.00 0.00 4.70
684 725 4.525912 AATTTGCAGAAGATTCACCACC 57.474 40.909 0.00 0.00 0.00 4.61
685 726 6.218746 AGAAAATTTGCAGAAGATTCACCAC 58.781 36.000 0.00 0.00 0.00 4.16
686 727 6.409524 AGAAAATTTGCAGAAGATTCACCA 57.590 33.333 0.00 0.00 0.00 4.17
698 739 7.327214 AGTTCAAACCAACTAGAAAATTTGCA 58.673 30.769 0.00 0.00 34.70 4.08
699 740 7.770801 AGTTCAAACCAACTAGAAAATTTGC 57.229 32.000 0.00 0.00 34.70 3.68
785 826 4.471904 TGTTATGTCGCTTCTCCTTCAT 57.528 40.909 0.00 0.00 0.00 2.57
906 958 3.383185 CTGAGATGACAGAAGAGGGTACC 59.617 52.174 2.17 2.17 44.68 3.34
907 959 4.020543 ACTGAGATGACAGAAGAGGGTAC 58.979 47.826 0.00 0.00 40.63 3.34
953 1005 2.814336 CTCCAAGTGACAAAACTAGGGC 59.186 50.000 0.00 0.00 0.00 5.19
985 1041 1.066152 GGCCATTTTTGCCTCGATCTC 59.934 52.381 0.00 0.00 45.70 2.75
997 1053 2.679996 GTCCCGCCTGGCCATTTT 60.680 61.111 14.12 0.00 0.00 1.82
1178 1261 5.925969 CACAAGCATATACGTACATCCATCA 59.074 40.000 0.00 0.00 0.00 3.07
1518 1608 2.026915 ACATGTCATCTGCTGGTTGCTA 60.027 45.455 0.00 0.00 43.37 3.49
1526 1616 2.124277 ATGCACACATGTCATCTGCT 57.876 45.000 0.00 0.00 34.35 4.24
1755 1845 0.389757 GCCGCCTAGCTTAGCTTACT 59.610 55.000 13.44 0.00 40.44 2.24
1763 1853 3.426309 ATGCATGGCCGCCTAGCTT 62.426 57.895 21.80 15.34 0.00 3.74
1801 1895 1.449423 TAGGAGTACGTACGGCGCA 60.449 57.895 21.06 0.00 46.11 6.09
1802 1896 1.010685 GTAGGAGTACGTACGGCGC 60.011 63.158 21.06 13.12 46.11 6.53
1811 1905 5.126067 TGGATGGTAAGTACGTAGGAGTAC 58.874 45.833 0.00 0.00 45.31 2.73
1813 1907 4.240881 TGGATGGTAAGTACGTAGGAGT 57.759 45.455 0.00 0.00 0.00 3.85
1815 1909 5.895534 AGAAATGGATGGTAAGTACGTAGGA 59.104 40.000 0.00 0.00 0.00 2.94
1921 2024 2.119655 GCGTAGGAGAGGGAAGCGA 61.120 63.158 0.00 0.00 0.00 4.93
1925 2028 1.275291 CAAACAGCGTAGGAGAGGGAA 59.725 52.381 0.00 0.00 0.00 3.97
1927 2030 0.608640 ACAAACAGCGTAGGAGAGGG 59.391 55.000 0.00 0.00 0.00 4.30
1928 2031 2.069273 CAACAAACAGCGTAGGAGAGG 58.931 52.381 0.00 0.00 0.00 3.69
1995 2138 2.047274 CACCGGCCTGTCATCGTT 60.047 61.111 0.00 0.00 0.00 3.85
2197 2340 9.032420 CGGTTCTTAATTTACTAGGAGTTCATC 57.968 37.037 0.00 0.00 0.00 2.92
2206 2353 4.547587 CGCGCACGGTTCTTAATTTACTAG 60.548 45.833 8.75 0.00 34.97 2.57
2228 2375 1.410737 CTCCGAACATGTGTACCGCG 61.411 60.000 0.00 0.00 0.00 6.46
2229 2376 1.693083 GCTCCGAACATGTGTACCGC 61.693 60.000 0.00 0.00 0.00 5.68
2230 2377 1.410737 CGCTCCGAACATGTGTACCG 61.411 60.000 0.00 1.06 0.00 4.02
2231 2378 0.108992 TCGCTCCGAACATGTGTACC 60.109 55.000 0.00 0.00 31.06 3.34
2287 2434 3.632643 ATCACACCATACACTCATGCA 57.367 42.857 0.00 0.00 0.00 3.96
2316 2466 5.302059 AGACTAGCTAGGAATGCATCGTTTA 59.698 40.000 24.35 0.00 0.00 2.01
2438 2590 1.134521 TCGCCTCGCCAATAATCACTT 60.135 47.619 0.00 0.00 0.00 3.16
2472 2624 5.115622 CGTGCACATATGACAGTAAGATACG 59.884 44.000 18.64 1.41 0.00 3.06
2483 2635 4.355543 AAATTGGACGTGCACATATGAC 57.644 40.909 18.64 1.48 0.00 3.06
2510 2664 4.971220 GGACGTGTCTCGCAAAAATAAAAA 59.029 37.500 0.00 0.00 44.19 1.94
2511 2665 4.035324 TGGACGTGTCTCGCAAAAATAAAA 59.965 37.500 0.00 0.00 44.19 1.52
2512 2666 3.560481 TGGACGTGTCTCGCAAAAATAAA 59.440 39.130 0.00 0.00 44.19 1.40
2513 2667 3.059461 GTGGACGTGTCTCGCAAAAATAA 60.059 43.478 0.00 0.00 44.19 1.40
2514 2668 2.477375 GTGGACGTGTCTCGCAAAAATA 59.523 45.455 0.00 0.00 44.19 1.40
2515 2669 1.263217 GTGGACGTGTCTCGCAAAAAT 59.737 47.619 0.00 0.00 44.19 1.82
2516 2670 0.653636 GTGGACGTGTCTCGCAAAAA 59.346 50.000 0.00 0.00 44.19 1.94
2517 2671 0.179094 AGTGGACGTGTCTCGCAAAA 60.179 50.000 0.00 0.00 44.19 2.44
2518 2672 0.179094 AAGTGGACGTGTCTCGCAAA 60.179 50.000 0.00 0.00 44.19 3.68
2519 2673 0.179094 AAAGTGGACGTGTCTCGCAA 60.179 50.000 0.00 0.00 44.19 4.85
2520 2674 0.596600 GAAAGTGGACGTGTCTCGCA 60.597 55.000 0.00 0.00 44.19 5.10
2521 2675 0.318784 AGAAAGTGGACGTGTCTCGC 60.319 55.000 0.00 0.00 44.19 5.03
2522 2676 2.135664 AAGAAAGTGGACGTGTCTCG 57.864 50.000 0.00 0.00 46.00 4.04
2523 2677 5.465724 ACAATAAAGAAAGTGGACGTGTCTC 59.534 40.000 0.00 0.00 0.00 3.36
2524 2678 5.365619 ACAATAAAGAAAGTGGACGTGTCT 58.634 37.500 0.00 0.00 0.00 3.41
2525 2679 5.668558 ACAATAAAGAAAGTGGACGTGTC 57.331 39.130 0.00 0.00 0.00 3.67
2526 2680 5.587043 TGAACAATAAAGAAAGTGGACGTGT 59.413 36.000 0.00 0.00 0.00 4.49
2552 2706 8.567948 CACTACTAAATTTTGACCACACTTGAT 58.432 33.333 6.63 0.00 0.00 2.57
2554 2708 7.855904 GTCACTACTAAATTTTGACCACACTTG 59.144 37.037 6.63 0.00 32.12 3.16
2555 2709 7.773690 AGTCACTACTAAATTTTGACCACACTT 59.226 33.333 13.72 0.00 37.84 3.16
2556 2710 7.280356 AGTCACTACTAAATTTTGACCACACT 58.720 34.615 13.72 5.05 37.84 3.55
2557 2711 7.492352 AGTCACTACTAAATTTTGACCACAC 57.508 36.000 13.72 3.31 37.84 3.82
2558 2712 7.386848 GCTAGTCACTACTAAATTTTGACCACA 59.613 37.037 13.72 2.92 37.75 4.17
2559 2713 7.386848 TGCTAGTCACTACTAAATTTTGACCAC 59.613 37.037 13.72 6.82 37.75 4.16
2560 2714 7.386848 GTGCTAGTCACTACTAAATTTTGACCA 59.613 37.037 13.72 3.13 42.38 4.02
2561 2715 7.386848 TGTGCTAGTCACTACTAAATTTTGACC 59.613 37.037 13.72 3.34 45.81 4.02
2562 2716 8.306680 TGTGCTAGTCACTACTAAATTTTGAC 57.693 34.615 15.28 10.62 45.81 3.18
2637 2795 8.927411 TGATGAACACATCAATTATCTCTCCTA 58.073 33.333 9.92 0.00 44.61 2.94
2701 2876 2.973082 GGGCCAAACATGACAGGC 59.027 61.111 4.39 15.42 46.28 4.85
2703 2878 2.568090 GCGGGCCAAACATGACAG 59.432 61.111 4.39 0.00 0.00 3.51
2825 3001 1.807142 TCATCGCGCAACAACCAAATA 59.193 42.857 8.75 0.00 0.00 1.40
2976 3157 9.454859 AAATAGTTGAAGAGAATAAACCCTGAG 57.545 33.333 0.00 0.00 0.00 3.35
3046 3232 7.040892 GGCATGTGCTGATAAAAGAGAATATGA 60.041 37.037 4.84 0.00 41.70 2.15
3092 3279 6.949352 AAAGACAATATGATGGTTGGCTAG 57.051 37.500 1.91 0.00 42.68 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.