Multiple sequence alignment - TraesCS7B01G272500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G272500 chr7B 100.000 2370 0 0 965 3334 500169604 500171973 0.000000e+00 4377.0
1 TraesCS7B01G272500 chr7B 100.000 500 0 0 1 500 500168640 500169139 0.000000e+00 924.0
2 TraesCS7B01G272500 chr7B 90.476 231 22 0 3104 3334 263272532 263272302 4.180000e-79 305.0
3 TraesCS7B01G272500 chr7D 96.260 909 27 5 1711 2613 475874441 475875348 0.000000e+00 1483.0
4 TraesCS7B01G272500 chr7D 94.433 503 15 4 1 500 475873102 475873594 0.000000e+00 761.0
5 TraesCS7B01G272500 chr7D 97.414 348 8 1 965 1311 475873748 475874095 2.860000e-165 592.0
6 TraesCS7B01G272500 chr7D 93.050 259 15 1 2613 2871 475875608 475875863 3.140000e-100 375.0
7 TraesCS7B01G272500 chr7D 87.636 275 18 7 2843 3104 475875866 475876137 4.180000e-79 305.0
8 TraesCS7B01G272500 chr7D 80.800 250 14 6 1330 1571 475874088 475874311 7.400000e-37 165.0
9 TraesCS7B01G272500 chr7A 91.850 773 50 7 1711 2480 520060014 520059252 0.000000e+00 1066.0
10 TraesCS7B01G272500 chr7A 83.978 543 35 16 1 500 520061325 520060792 1.080000e-129 473.0
11 TraesCS7B01G272500 chr7A 84.322 472 34 15 965 1418 520060648 520060199 3.070000e-115 425.0
12 TraesCS7B01G272500 chr7A 100.000 37 0 0 1432 1468 520060209 520060173 5.970000e-08 69.4
13 TraesCS7B01G272500 chr2B 96.540 289 10 0 2147 2435 365397 365109 2.330000e-131 479.0
14 TraesCS7B01G272500 chr2B 95.489 266 12 0 1792 2057 365673 365408 3.070000e-115 425.0
15 TraesCS7B01G272500 chr1B 92.342 222 16 1 3106 3326 592855661 592855882 6.940000e-82 315.0
16 TraesCS7B01G272500 chr1B 89.956 229 23 0 3106 3334 592871295 592871523 2.520000e-76 296.0
17 TraesCS7B01G272500 chr5B 89.956 229 23 0 3106 3334 517794389 517794617 2.520000e-76 296.0
18 TraesCS7B01G272500 chr5B 89.130 230 23 2 3105 3334 435235140 435235367 5.440000e-73 285.0
19 TraesCS7B01G272500 chr5B 93.750 48 3 0 1800 1847 452124481 452124434 4.610000e-09 73.1
20 TraesCS7B01G272500 chr4B 89.520 229 24 0 3106 3334 434524352 434524124 1.170000e-74 291.0
21 TraesCS7B01G272500 chr4B 81.731 208 35 2 1008 1212 662458930 662458723 1.590000e-38 171.0
22 TraesCS7B01G272500 chr3B 89.520 229 24 0 3106 3334 198550176 198549948 1.170000e-74 291.0
23 TraesCS7B01G272500 chr3B 89.333 225 24 0 3110 3334 313900111 313900335 1.960000e-72 283.0
24 TraesCS7B01G272500 chr3B 88.646 229 26 0 3106 3334 714806239 714806467 2.530000e-71 279.0
25 TraesCS7B01G272500 chr3B 82.653 196 31 3 1029 1223 412595968 412596161 1.590000e-38 171.0
26 TraesCS7B01G272500 chr3B 82.266 203 31 4 1014 1212 799860596 799860395 1.590000e-38 171.0
27 TraesCS7B01G272500 chr3B 75.143 350 71 11 1748 2094 799982907 799982571 2.070000e-32 150.0
28 TraesCS7B01G272500 chr4D 83.696 184 28 2 1030 1212 506340128 506339946 4.420000e-39 172.0
29 TraesCS7B01G272500 chrUn 82.653 196 30 4 1018 1212 109048714 109048522 1.590000e-38 171.0
30 TraesCS7B01G272500 chr3D 82.812 192 31 2 1029 1219 308985786 308985596 1.590000e-38 171.0
31 TraesCS7B01G272500 chr3A 82.653 196 31 3 1029 1223 428570226 428570033 1.590000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G272500 chr7B 500168640 500171973 3333 False 2650.50 4377 100.000000 1 3334 2 chr7B.!!$F1 3333
1 TraesCS7B01G272500 chr7D 475873102 475876137 3035 False 613.50 1483 91.598833 1 3104 6 chr7D.!!$F1 3103
2 TraesCS7B01G272500 chr7A 520059252 520061325 2073 True 508.35 1066 90.037500 1 2480 4 chr7A.!!$R1 2479
3 TraesCS7B01G272500 chr2B 365109 365673 564 True 452.00 479 96.014500 1792 2435 2 chr2B.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 544 2.646175 CGCCGTCTCTTTCTCCCCA 61.646 63.158 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2445 2559 0.329261 TCATCCCTGGAACAAGGCAG 59.671 55.0 0.0 0.0 40.42 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 161 7.423844 AAAAGGAAAAACTGACCAGAAATCT 57.576 32.000 3.76 0.00 0.00 2.40
150 164 5.707764 AGGAAAAACTGACCAGAAATCTAGC 59.292 40.000 3.76 0.00 0.00 3.42
489 544 2.646175 CGCCGTCTCTTTCTCCCCA 61.646 63.158 0.00 0.00 0.00 4.96
1221 1282 2.996621 GCTCAACACCTATGTCAGTCAC 59.003 50.000 0.00 0.00 38.45 3.67
1236 1303 4.156190 GTCAGTCACTTGATTCCTACTCGA 59.844 45.833 0.00 0.00 0.00 4.04
1254 1322 1.721389 CGATCTGTGGTTCTGTTGTCG 59.279 52.381 0.00 0.00 0.00 4.35
1281 1349 3.496131 CCATGTTAAGCCGCGCGT 61.496 61.111 29.95 13.36 0.00 6.01
1315 1384 6.312141 TCTTGATTCAGAGAGAGAGAGAGA 57.688 41.667 0.00 0.00 0.00 3.10
1320 1389 5.604758 TTCAGAGAGAGAGAGAGAGAGAG 57.395 47.826 0.00 0.00 0.00 3.20
1321 1390 4.871822 TCAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
1322 1391 4.892345 TCAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
1323 1392 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
1324 1393 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
1325 1394 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1326 1395 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1327 1396 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1328 1397 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1329 1398 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1330 1399 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1331 1400 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1332 1401 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1333 1402 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1334 1403 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1335 1404 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1336 1405 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1337 1406 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1364 1434 1.329292 TGTACAAGTTCTTGTGTGCGC 59.671 47.619 23.14 0.00 36.44 6.09
1415 1489 5.733620 TTTTGGGAGTATGTAGTTCGTCT 57.266 39.130 0.00 0.00 0.00 4.18
1416 1490 5.733620 TTTGGGAGTATGTAGTTCGTCTT 57.266 39.130 0.00 0.00 0.00 3.01
1417 1491 5.733620 TTGGGAGTATGTAGTTCGTCTTT 57.266 39.130 0.00 0.00 0.00 2.52
1418 1492 5.733620 TGGGAGTATGTAGTTCGTCTTTT 57.266 39.130 0.00 0.00 0.00 2.27
1419 1493 6.105397 TGGGAGTATGTAGTTCGTCTTTTT 57.895 37.500 0.00 0.00 0.00 1.94
1473 1547 3.552068 GGTTGGGGTGTCGATTTCTTTTG 60.552 47.826 0.00 0.00 0.00 2.44
1499 1579 0.476771 AACTGGTTGGGGTGTCGATT 59.523 50.000 0.00 0.00 0.00 3.34
1510 1590 4.164413 TGGGGTGTCGATTTATGGACATAA 59.836 41.667 10.15 0.80 45.07 1.90
1537 1617 3.864686 GTGGCGCGCGATGTCAAT 61.865 61.111 37.18 0.00 0.00 2.57
1538 1618 3.124270 TGGCGCGCGATGTCAATT 61.124 55.556 37.18 0.00 0.00 2.32
1539 1619 1.811679 TGGCGCGCGATGTCAATTA 60.812 52.632 37.18 4.57 0.00 1.40
1541 1621 1.636340 GCGCGCGATGTCAATTACT 59.364 52.632 37.18 0.00 0.00 2.24
1542 1622 0.651610 GCGCGCGATGTCAATTACTG 60.652 55.000 37.18 0.00 0.00 2.74
1546 1626 1.396648 CGCGATGTCAATTACTGGCAA 59.603 47.619 0.00 0.00 44.57 4.52
1547 1627 2.537529 CGCGATGTCAATTACTGGCAAG 60.538 50.000 0.00 0.00 44.57 4.01
1571 1651 4.108699 TCTGAATATTTTGCGCCTTTGG 57.891 40.909 4.18 0.00 0.00 3.28
1572 1652 2.604462 CTGAATATTTTGCGCCTTTGGC 59.396 45.455 4.18 0.00 46.75 4.52
1585 1665 2.997485 CTTTGGCGAAAAGGAAGGAG 57.003 50.000 0.00 0.00 41.46 3.69
1595 1675 3.686916 AAAGGAAGGAGGAGTTCGAAG 57.313 47.619 0.00 0.00 0.00 3.79
1602 1682 4.298103 AGGAGGAGTTCGAAGTAGTACA 57.702 45.455 5.25 0.00 0.00 2.90
1603 1683 4.660168 AGGAGGAGTTCGAAGTAGTACAA 58.340 43.478 5.25 0.00 0.00 2.41
1604 1684 4.458642 AGGAGGAGTTCGAAGTAGTACAAC 59.541 45.833 5.25 0.00 0.00 3.32
1605 1685 4.401714 GAGGAGTTCGAAGTAGTACAACG 58.598 47.826 5.25 7.80 0.00 4.10
1606 1686 3.817647 AGGAGTTCGAAGTAGTACAACGT 59.182 43.478 5.25 0.00 0.00 3.99
1607 1687 4.276926 AGGAGTTCGAAGTAGTACAACGTT 59.723 41.667 5.25 0.00 0.00 3.99
1608 1688 4.978580 GGAGTTCGAAGTAGTACAACGTTT 59.021 41.667 5.25 0.00 0.00 3.60
1609 1689 6.017109 AGGAGTTCGAAGTAGTACAACGTTTA 60.017 38.462 5.25 0.00 0.00 2.01
1610 1690 6.803807 GGAGTTCGAAGTAGTACAACGTTTAT 59.196 38.462 5.25 0.00 0.00 1.40
1611 1691 7.007815 GGAGTTCGAAGTAGTACAACGTTTATC 59.992 40.741 5.25 10.65 0.00 1.75
1612 1692 6.803807 AGTTCGAAGTAGTACAACGTTTATCC 59.196 38.462 2.97 0.00 0.00 2.59
1613 1693 5.323900 TCGAAGTAGTACAACGTTTATCCG 58.676 41.667 0.00 0.00 0.00 4.18
1614 1694 4.028187 CGAAGTAGTACAACGTTTATCCGC 60.028 45.833 0.00 0.00 0.00 5.54
1615 1695 4.708726 AGTAGTACAACGTTTATCCGCT 57.291 40.909 0.00 0.00 0.00 5.52
1616 1696 5.064441 AGTAGTACAACGTTTATCCGCTT 57.936 39.130 0.00 0.00 0.00 4.68
1617 1697 5.098211 AGTAGTACAACGTTTATCCGCTTC 58.902 41.667 0.00 0.00 0.00 3.86
1618 1698 2.919229 AGTACAACGTTTATCCGCTTCG 59.081 45.455 0.00 0.00 0.00 3.79
1619 1699 2.068837 ACAACGTTTATCCGCTTCGA 57.931 45.000 0.00 0.00 0.00 3.71
1620 1700 2.406130 ACAACGTTTATCCGCTTCGAA 58.594 42.857 0.00 0.00 0.00 3.71
1621 1701 2.410730 ACAACGTTTATCCGCTTCGAAG 59.589 45.455 21.02 21.02 0.00 3.79
1634 1714 2.793933 CTTCGAAGCAGCATTTCCATG 58.206 47.619 13.09 0.00 0.00 3.66
1643 1723 2.226200 CAGCATTTCCATGTGTTCGTGA 59.774 45.455 0.00 0.00 32.28 4.35
1651 1731 4.133820 TCCATGTGTTCGTGATTTGAAGT 58.866 39.130 0.00 0.00 32.78 3.01
1663 1743 5.051307 CGTGATTTGAAGTACAAGAACGTGA 60.051 40.000 0.00 0.00 39.77 4.35
1671 1751 7.731530 TTGAAGTACAAGAACGTGACACGTATA 60.732 37.037 31.95 16.72 42.78 1.47
1683 1767 1.455217 ACGTATAGCGGGCTGGAGT 60.455 57.895 2.86 0.00 46.52 3.85
1732 1840 3.803021 GCACTAGATTCTGCCCTGATCAG 60.803 52.174 16.24 16.24 0.00 2.90
2144 2258 4.388499 GTGGAGGGCGGCGAGAAA 62.388 66.667 12.98 0.00 0.00 2.52
2445 2559 0.249398 ACCGCTACATGTTCCCAGTC 59.751 55.000 2.30 0.00 0.00 3.51
2497 2611 5.734311 CAAATTCGTGTTTTCTCTGTACGT 58.266 37.500 0.00 0.00 36.28 3.57
2568 2682 2.223745 GGAGGCTACGGTCAACAAAAA 58.776 47.619 0.00 0.00 0.00 1.94
2575 2689 3.768468 ACGGTCAACAAAAATTCGTGT 57.232 38.095 0.00 0.00 0.00 4.49
2581 2695 5.189625 GTCAACAAAAATTCGTGTGCATTG 58.810 37.500 0.00 0.00 0.00 2.82
2589 2703 1.020437 TCGTGTGCATTGCAAGTCAA 58.980 45.000 13.94 0.00 41.47 3.18
2596 2710 4.142945 TGTGCATTGCAAGTCAACAAAAAC 60.143 37.500 13.94 0.00 41.47 2.43
2602 2716 7.254387 GCATTGCAAGTCAACAAAAACAATCTA 60.254 33.333 4.94 0.00 37.53 1.98
2633 3007 2.491770 TTAGGCCGCCTTTGGATGCA 62.492 55.000 19.35 0.00 34.61 3.96
2641 3015 1.742831 GCCTTTGGATGCACGTAATGA 59.257 47.619 0.00 0.00 0.00 2.57
2654 3028 3.615056 CACGTAATGACAGTGCCGATTTA 59.385 43.478 4.22 0.00 0.00 1.40
2658 3032 5.234329 CGTAATGACAGTGCCGATTTAGATT 59.766 40.000 0.00 0.00 0.00 2.40
2670 3044 5.003804 CCGATTTAGATTGGTATTCCCCAG 58.996 45.833 0.00 0.00 35.49 4.45
2677 3051 0.988145 TGGTATTCCCCAGCCCTCAG 60.988 60.000 0.00 0.00 0.00 3.35
2705 3079 7.455058 TCCATGTTTGGTTGTAGTTGTACTAT 58.545 34.615 0.00 0.00 44.06 2.12
2757 3131 2.092429 AGGTGAGGTGACTGAAAAAGCA 60.092 45.455 0.00 0.00 44.43 3.91
2758 3132 2.687935 GGTGAGGTGACTGAAAAAGCAA 59.312 45.455 0.00 0.00 44.43 3.91
2759 3133 3.319122 GGTGAGGTGACTGAAAAAGCAAT 59.681 43.478 0.00 0.00 44.43 3.56
2765 3139 3.248363 GTGACTGAAAAAGCAATTTGGGC 59.752 43.478 0.00 0.00 0.00 5.36
2795 3169 0.808453 ATTACGACCCGTTGGATGCG 60.808 55.000 0.00 0.00 41.54 4.73
2825 3199 5.682234 TGGCTAGATCAGATTCTTCAACA 57.318 39.130 0.00 0.00 0.00 3.33
2828 3202 5.700373 GGCTAGATCAGATTCTTCAACATCC 59.300 44.000 0.00 0.00 0.00 3.51
2832 3206 5.814705 AGATCAGATTCTTCAACATCCGAAC 59.185 40.000 0.00 0.00 0.00 3.95
2871 3276 2.162338 CTACCTCGAACCGCCCAACA 62.162 60.000 0.00 0.00 0.00 3.33
2878 3283 1.456705 AACCGCCCAACAACCACAT 60.457 52.632 0.00 0.00 0.00 3.21
2880 3285 1.603455 CCGCCCAACAACCACATCT 60.603 57.895 0.00 0.00 0.00 2.90
2890 3295 1.730064 CAACCACATCTTAACCGACCG 59.270 52.381 0.00 0.00 0.00 4.79
2914 3319 3.329542 AACGACGCTCCCATGCCAT 62.330 57.895 0.00 0.00 0.00 4.40
2969 3387 1.076777 CATCACCGGCCATCCCTTT 60.077 57.895 0.00 0.00 0.00 3.11
2975 3393 1.455032 CGGCCATCCCTTTAACCCC 60.455 63.158 2.24 0.00 0.00 4.95
2983 3401 1.222387 CCTTTAACCCCGGCGATGA 59.778 57.895 9.30 0.00 0.00 2.92
2984 3402 0.393267 CCTTTAACCCCGGCGATGAA 60.393 55.000 9.30 0.00 0.00 2.57
2985 3403 1.675552 CTTTAACCCCGGCGATGAAT 58.324 50.000 9.30 0.00 0.00 2.57
3015 3433 4.660938 GCGAACCTGCACCCCCTT 62.661 66.667 0.00 0.00 34.15 3.95
3022 3440 1.609783 CTGCACCCCCTTCCCTAAG 59.390 63.158 0.00 0.00 0.00 2.18
3032 3450 4.019591 CCCCCTTCCCTAAGATAAATACCG 60.020 50.000 0.00 0.00 34.37 4.02
3055 3473 2.644798 ACTCATCTGCCACCCTAAGTTT 59.355 45.455 0.00 0.00 0.00 2.66
3064 3482 3.496160 GCCACCCTAAGTTTGAAGAGTCA 60.496 47.826 0.00 0.00 0.00 3.41
3066 3484 3.748568 CACCCTAAGTTTGAAGAGTCAGC 59.251 47.826 0.00 0.00 34.49 4.26
3072 3490 2.157738 GTTTGAAGAGTCAGCTGCCAT 58.842 47.619 9.47 0.00 34.49 4.40
3086 3504 3.969976 AGCTGCCATTCTAAGATAGACCA 59.030 43.478 0.00 0.00 33.84 4.02
3091 3509 5.663106 TGCCATTCTAAGATAGACCAAGAGT 59.337 40.000 0.00 0.00 33.84 3.24
3104 3522 0.179134 CAAGAGTCCTTCTACGGCGG 60.179 60.000 13.24 0.00 34.14 6.13
3105 3523 0.611340 AAGAGTCCTTCTACGGCGGT 60.611 55.000 13.24 1.39 34.14 5.68
3106 3524 1.139095 GAGTCCTTCTACGGCGGTG 59.861 63.158 13.24 3.06 0.00 4.94
3107 3525 1.303888 AGTCCTTCTACGGCGGTGA 60.304 57.895 13.24 5.86 0.00 4.02
3108 3526 1.153881 GTCCTTCTACGGCGGTGAC 60.154 63.158 13.24 4.47 0.00 3.67
3125 3543 3.757493 GGTGACGAGGATATGTACCTAGG 59.243 52.174 7.41 7.41 37.93 3.02
3126 3544 3.757493 GTGACGAGGATATGTACCTAGGG 59.243 52.174 14.81 0.00 37.93 3.53
3127 3545 3.396946 TGACGAGGATATGTACCTAGGGT 59.603 47.826 14.81 1.17 37.93 4.34
3128 3546 4.598807 TGACGAGGATATGTACCTAGGGTA 59.401 45.833 14.81 0.12 37.93 3.69
3129 3547 5.176741 ACGAGGATATGTACCTAGGGTAG 57.823 47.826 14.81 0.00 39.02 3.18
3140 3558 2.327373 CCTAGGGTAGGGTCTTAAGCC 58.673 57.143 0.00 2.49 42.42 4.35
3150 3568 3.804786 GGTCTTAAGCCTGACCTAGAC 57.195 52.381 0.00 0.00 46.65 2.59
3151 3569 3.097614 GGTCTTAAGCCTGACCTAGACA 58.902 50.000 0.00 0.00 46.65 3.41
3152 3570 3.119065 GGTCTTAAGCCTGACCTAGACAC 60.119 52.174 0.00 0.00 46.65 3.67
3153 3571 3.097614 TCTTAAGCCTGACCTAGACACC 58.902 50.000 0.00 0.00 0.00 4.16
3154 3572 1.861982 TAAGCCTGACCTAGACACCC 58.138 55.000 0.00 0.00 0.00 4.61
3155 3573 0.910088 AAGCCTGACCTAGACACCCC 60.910 60.000 0.00 0.00 0.00 4.95
3156 3574 1.612442 GCCTGACCTAGACACCCCA 60.612 63.158 0.00 0.00 0.00 4.96
3157 3575 0.983378 GCCTGACCTAGACACCCCAT 60.983 60.000 0.00 0.00 0.00 4.00
3158 3576 1.123928 CCTGACCTAGACACCCCATC 58.876 60.000 0.00 0.00 0.00 3.51
3159 3577 1.123928 CTGACCTAGACACCCCATCC 58.876 60.000 0.00 0.00 0.00 3.51
3160 3578 0.415830 TGACCTAGACACCCCATCCA 59.584 55.000 0.00 0.00 0.00 3.41
3161 3579 1.203376 TGACCTAGACACCCCATCCAA 60.203 52.381 0.00 0.00 0.00 3.53
3162 3580 1.913419 GACCTAGACACCCCATCCAAA 59.087 52.381 0.00 0.00 0.00 3.28
3163 3581 1.916181 ACCTAGACACCCCATCCAAAG 59.084 52.381 0.00 0.00 0.00 2.77
3164 3582 2.196595 CCTAGACACCCCATCCAAAGA 58.803 52.381 0.00 0.00 0.00 2.52
3165 3583 2.780010 CCTAGACACCCCATCCAAAGAT 59.220 50.000 0.00 0.00 0.00 2.40
3166 3584 3.973973 CCTAGACACCCCATCCAAAGATA 59.026 47.826 0.00 0.00 0.00 1.98
3167 3585 4.599241 CCTAGACACCCCATCCAAAGATAT 59.401 45.833 0.00 0.00 0.00 1.63
3168 3586 5.073691 CCTAGACACCCCATCCAAAGATATT 59.926 44.000 0.00 0.00 0.00 1.28
3169 3587 4.796606 AGACACCCCATCCAAAGATATTG 58.203 43.478 0.00 0.00 0.00 1.90
3170 3588 3.299503 ACACCCCATCCAAAGATATTGC 58.700 45.455 0.00 0.00 0.00 3.56
3171 3589 2.629617 CACCCCATCCAAAGATATTGCC 59.370 50.000 0.00 0.00 0.00 4.52
3172 3590 2.250924 CCCCATCCAAAGATATTGCCC 58.749 52.381 0.00 0.00 0.00 5.36
3173 3591 2.158264 CCCCATCCAAAGATATTGCCCT 60.158 50.000 0.00 0.00 0.00 5.19
3174 3592 3.075882 CCCCATCCAAAGATATTGCCCTA 59.924 47.826 0.00 0.00 0.00 3.53
3175 3593 4.264532 CCCCATCCAAAGATATTGCCCTAT 60.265 45.833 0.00 0.00 0.00 2.57
3176 3594 5.044179 CCCCATCCAAAGATATTGCCCTATA 60.044 44.000 0.00 0.00 0.00 1.31
3177 3595 6.493166 CCCATCCAAAGATATTGCCCTATAA 58.507 40.000 0.00 0.00 0.00 0.98
3178 3596 7.128077 CCCATCCAAAGATATTGCCCTATAAT 58.872 38.462 0.00 0.00 0.00 1.28
3179 3597 7.286316 CCCATCCAAAGATATTGCCCTATAATC 59.714 40.741 0.00 0.00 0.00 1.75
3180 3598 7.835682 CCATCCAAAGATATTGCCCTATAATCA 59.164 37.037 0.00 0.00 0.00 2.57
3181 3599 9.246670 CATCCAAAGATATTGCCCTATAATCAA 57.753 33.333 0.00 0.00 0.00 2.57
3182 3600 9.827198 ATCCAAAGATATTGCCCTATAATCAAA 57.173 29.630 0.00 0.00 0.00 2.69
3183 3601 9.300681 TCCAAAGATATTGCCCTATAATCAAAG 57.699 33.333 0.00 0.00 0.00 2.77
3184 3602 8.031277 CCAAAGATATTGCCCTATAATCAAAGC 58.969 37.037 0.00 0.00 0.00 3.51
3185 3603 7.709149 AAGATATTGCCCTATAATCAAAGCC 57.291 36.000 0.00 0.00 0.00 4.35
3186 3604 6.793478 AGATATTGCCCTATAATCAAAGCCA 58.207 36.000 0.00 0.00 0.00 4.75
3187 3605 7.416731 AGATATTGCCCTATAATCAAAGCCAT 58.583 34.615 0.00 0.00 0.00 4.40
3188 3606 7.897565 AGATATTGCCCTATAATCAAAGCCATT 59.102 33.333 0.00 0.00 0.00 3.16
3189 3607 5.789643 TTGCCCTATAATCAAAGCCATTC 57.210 39.130 0.00 0.00 0.00 2.67
3190 3608 4.802307 TGCCCTATAATCAAAGCCATTCA 58.198 39.130 0.00 0.00 0.00 2.57
3191 3609 5.207354 TGCCCTATAATCAAAGCCATTCAA 58.793 37.500 0.00 0.00 0.00 2.69
3192 3610 5.660417 TGCCCTATAATCAAAGCCATTCAAA 59.340 36.000 0.00 0.00 0.00 2.69
3193 3611 6.183360 TGCCCTATAATCAAAGCCATTCAAAG 60.183 38.462 0.00 0.00 0.00 2.77
3194 3612 6.040842 GCCCTATAATCAAAGCCATTCAAAGA 59.959 38.462 0.00 0.00 0.00 2.52
3195 3613 7.428826 CCCTATAATCAAAGCCATTCAAAGAC 58.571 38.462 0.00 0.00 0.00 3.01
3196 3614 7.428826 CCTATAATCAAAGCCATTCAAAGACC 58.571 38.462 0.00 0.00 0.00 3.85
3197 3615 6.855763 ATAATCAAAGCCATTCAAAGACCA 57.144 33.333 0.00 0.00 0.00 4.02
3198 3616 5.549742 AATCAAAGCCATTCAAAGACCAA 57.450 34.783 0.00 0.00 0.00 3.67
3199 3617 4.320608 TCAAAGCCATTCAAAGACCAAC 57.679 40.909 0.00 0.00 0.00 3.77
3200 3618 3.703556 TCAAAGCCATTCAAAGACCAACA 59.296 39.130 0.00 0.00 0.00 3.33
3201 3619 3.733443 AAGCCATTCAAAGACCAACAC 57.267 42.857 0.00 0.00 0.00 3.32
3202 3620 2.665165 AGCCATTCAAAGACCAACACA 58.335 42.857 0.00 0.00 0.00 3.72
3203 3621 3.030291 AGCCATTCAAAGACCAACACAA 58.970 40.909 0.00 0.00 0.00 3.33
3204 3622 3.450457 AGCCATTCAAAGACCAACACAAA 59.550 39.130 0.00 0.00 0.00 2.83
3205 3623 3.803778 GCCATTCAAAGACCAACACAAAG 59.196 43.478 0.00 0.00 0.00 2.77
3206 3624 4.680440 GCCATTCAAAGACCAACACAAAGT 60.680 41.667 0.00 0.00 0.00 2.66
3207 3625 5.451242 GCCATTCAAAGACCAACACAAAGTA 60.451 40.000 0.00 0.00 0.00 2.24
3208 3626 5.977129 CCATTCAAAGACCAACACAAAGTAC 59.023 40.000 0.00 0.00 0.00 2.73
3209 3627 5.570234 TTCAAAGACCAACACAAAGTACC 57.430 39.130 0.00 0.00 0.00 3.34
3210 3628 3.623960 TCAAAGACCAACACAAAGTACCG 59.376 43.478 0.00 0.00 0.00 4.02
3211 3629 3.547054 AAGACCAACACAAAGTACCGA 57.453 42.857 0.00 0.00 0.00 4.69
3212 3630 2.830104 AGACCAACACAAAGTACCGAC 58.170 47.619 0.00 0.00 0.00 4.79
3213 3631 2.433239 AGACCAACACAAAGTACCGACT 59.567 45.455 0.00 0.00 37.59 4.18
3214 3632 2.542595 GACCAACACAAAGTACCGACTG 59.457 50.000 0.00 0.00 35.52 3.51
3215 3633 1.871039 CCAACACAAAGTACCGACTGG 59.129 52.381 0.00 0.00 42.84 4.00
3216 3634 2.484065 CCAACACAAAGTACCGACTGGA 60.484 50.000 0.00 0.00 39.21 3.86
3217 3635 3.199677 CAACACAAAGTACCGACTGGAA 58.800 45.455 0.00 0.00 39.21 3.53
3218 3636 3.764237 ACACAAAGTACCGACTGGAAT 57.236 42.857 0.00 0.00 39.21 3.01
3219 3637 3.660865 ACACAAAGTACCGACTGGAATC 58.339 45.455 0.00 0.00 39.21 2.52
3220 3638 3.070446 ACACAAAGTACCGACTGGAATCA 59.930 43.478 0.00 0.00 39.21 2.57
3221 3639 3.432252 CACAAAGTACCGACTGGAATCAC 59.568 47.826 0.00 0.00 39.21 3.06
3222 3640 3.000727 CAAAGTACCGACTGGAATCACC 58.999 50.000 0.00 0.00 39.21 4.02
3223 3641 2.233305 AGTACCGACTGGAATCACCT 57.767 50.000 0.00 0.00 39.21 4.00
3224 3642 2.537143 AGTACCGACTGGAATCACCTT 58.463 47.619 0.00 0.00 39.21 3.50
3225 3643 2.233922 AGTACCGACTGGAATCACCTTG 59.766 50.000 0.00 0.00 39.21 3.61
3226 3644 1.348064 ACCGACTGGAATCACCTTGA 58.652 50.000 0.00 0.00 39.21 3.02
3227 3645 1.697432 ACCGACTGGAATCACCTTGAA 59.303 47.619 0.00 0.00 39.21 2.69
3228 3646 2.289694 ACCGACTGGAATCACCTTGAAG 60.290 50.000 0.00 0.00 39.21 3.02
3229 3647 2.289694 CCGACTGGAATCACCTTGAAGT 60.290 50.000 0.00 0.00 39.86 3.01
3230 3648 2.738846 CGACTGGAATCACCTTGAAGTG 59.261 50.000 0.00 0.00 39.86 3.16
3231 3649 2.485814 GACTGGAATCACCTTGAAGTGC 59.514 50.000 0.00 0.00 37.68 4.40
3232 3650 2.158623 ACTGGAATCACCTTGAAGTGCA 60.159 45.455 0.00 0.00 37.68 4.57
3233 3651 2.886523 CTGGAATCACCTTGAAGTGCAA 59.113 45.455 0.00 0.00 37.68 4.08
3234 3652 3.499338 TGGAATCACCTTGAAGTGCAAT 58.501 40.909 0.00 0.00 37.68 3.56
3235 3653 3.507233 TGGAATCACCTTGAAGTGCAATC 59.493 43.478 0.00 0.00 37.68 2.67
3236 3654 3.119352 GGAATCACCTTGAAGTGCAATCC 60.119 47.826 0.00 0.00 37.68 3.01
3237 3655 2.655090 TCACCTTGAAGTGCAATCCA 57.345 45.000 0.00 0.00 37.68 3.41
3238 3656 2.229792 TCACCTTGAAGTGCAATCCAC 58.770 47.619 0.00 0.00 45.01 4.02
3246 3664 3.514777 GTGCAATCCACTCGACAGA 57.485 52.632 0.00 0.00 41.35 3.41
3247 3665 1.795768 GTGCAATCCACTCGACAGAA 58.204 50.000 0.00 0.00 41.35 3.02
3248 3666 1.728971 GTGCAATCCACTCGACAGAAG 59.271 52.381 0.00 0.00 41.35 2.85
3249 3667 1.618343 TGCAATCCACTCGACAGAAGA 59.382 47.619 0.00 0.00 0.00 2.87
3250 3668 1.996191 GCAATCCACTCGACAGAAGAC 59.004 52.381 0.00 0.00 0.00 3.01
3251 3669 2.353208 GCAATCCACTCGACAGAAGACT 60.353 50.000 0.00 0.00 0.00 3.24
3252 3670 3.506810 CAATCCACTCGACAGAAGACTC 58.493 50.000 0.00 0.00 0.00 3.36
3253 3671 1.535833 TCCACTCGACAGAAGACTCC 58.464 55.000 0.00 0.00 0.00 3.85
3254 3672 1.202891 TCCACTCGACAGAAGACTCCA 60.203 52.381 0.00 0.00 0.00 3.86
3255 3673 1.821753 CCACTCGACAGAAGACTCCAT 59.178 52.381 0.00 0.00 0.00 3.41
3256 3674 2.232452 CCACTCGACAGAAGACTCCATT 59.768 50.000 0.00 0.00 0.00 3.16
3257 3675 3.506810 CACTCGACAGAAGACTCCATTC 58.493 50.000 0.00 0.00 0.00 2.67
3258 3676 2.162608 ACTCGACAGAAGACTCCATTCG 59.837 50.000 0.00 0.00 0.00 3.34
3259 3677 1.472878 TCGACAGAAGACTCCATTCGG 59.527 52.381 0.00 0.00 0.00 4.30
3260 3678 1.472878 CGACAGAAGACTCCATTCGGA 59.527 52.381 0.00 0.00 39.79 4.55
3261 3679 2.099921 CGACAGAAGACTCCATTCGGAT 59.900 50.000 0.00 0.00 41.79 4.18
3262 3680 3.315470 CGACAGAAGACTCCATTCGGATA 59.685 47.826 0.00 0.00 41.79 2.59
3263 3681 4.022762 CGACAGAAGACTCCATTCGGATAT 60.023 45.833 0.00 0.00 41.79 1.63
3264 3682 5.461032 ACAGAAGACTCCATTCGGATATC 57.539 43.478 0.00 0.00 41.79 1.63
3265 3683 4.282195 ACAGAAGACTCCATTCGGATATCC 59.718 45.833 12.14 12.14 41.79 2.59
3266 3684 3.835395 AGAAGACTCCATTCGGATATCCC 59.165 47.826 16.36 0.00 41.79 3.85
3267 3685 3.260269 AGACTCCATTCGGATATCCCA 57.740 47.619 16.36 0.00 41.79 4.37
3268 3686 3.587498 AGACTCCATTCGGATATCCCAA 58.413 45.455 16.36 10.36 41.79 4.12
3269 3687 4.171234 AGACTCCATTCGGATATCCCAAT 58.829 43.478 16.36 12.36 41.79 3.16
3270 3688 4.599241 AGACTCCATTCGGATATCCCAATT 59.401 41.667 16.36 0.04 41.79 2.32
3271 3689 5.073691 AGACTCCATTCGGATATCCCAATTT 59.926 40.000 16.36 0.00 41.79 1.82
3272 3690 5.316987 ACTCCATTCGGATATCCCAATTTC 58.683 41.667 16.36 0.00 41.79 2.17
3273 3691 5.163099 ACTCCATTCGGATATCCCAATTTCA 60.163 40.000 16.36 1.01 41.79 2.69
3274 3692 5.070001 TCCATTCGGATATCCCAATTTCAC 58.930 41.667 16.36 0.00 35.91 3.18
3275 3693 5.072741 CCATTCGGATATCCCAATTTCACT 58.927 41.667 16.36 0.00 34.14 3.41
3276 3694 5.182001 CCATTCGGATATCCCAATTTCACTC 59.818 44.000 16.36 0.00 34.14 3.51
3277 3695 3.990092 TCGGATATCCCAATTTCACTCG 58.010 45.455 16.36 0.00 34.14 4.18
3278 3696 3.639561 TCGGATATCCCAATTTCACTCGA 59.360 43.478 16.36 2.44 34.14 4.04
3279 3697 3.741344 CGGATATCCCAATTTCACTCGAC 59.259 47.826 16.36 0.00 34.14 4.20
3280 3698 4.065789 GGATATCCCAATTTCACTCGACC 58.934 47.826 11.02 0.00 34.14 4.79
3281 3699 4.444306 GGATATCCCAATTTCACTCGACCA 60.444 45.833 11.02 0.00 34.14 4.02
3282 3700 2.178912 TCCCAATTTCACTCGACCAC 57.821 50.000 0.00 0.00 0.00 4.16
3283 3701 1.418264 TCCCAATTTCACTCGACCACA 59.582 47.619 0.00 0.00 0.00 4.17
3284 3702 1.806542 CCCAATTTCACTCGACCACAG 59.193 52.381 0.00 0.00 0.00 3.66
3285 3703 2.494059 CCAATTTCACTCGACCACAGT 58.506 47.619 0.00 0.00 0.00 3.55
3286 3704 3.556213 CCCAATTTCACTCGACCACAGTA 60.556 47.826 0.00 0.00 0.00 2.74
3287 3705 3.679980 CCAATTTCACTCGACCACAGTAG 59.320 47.826 0.00 0.00 0.00 2.57
3288 3706 3.594603 ATTTCACTCGACCACAGTAGG 57.405 47.619 0.00 0.00 0.00 3.18
3289 3707 1.254026 TTCACTCGACCACAGTAGGG 58.746 55.000 0.00 0.00 0.00 3.53
3290 3708 0.402887 TCACTCGACCACAGTAGGGA 59.597 55.000 0.00 0.00 0.00 4.20
3291 3709 0.526662 CACTCGACCACAGTAGGGAC 59.473 60.000 0.00 0.00 0.00 4.46
3292 3710 0.111832 ACTCGACCACAGTAGGGACA 59.888 55.000 0.00 0.00 0.00 4.02
3293 3711 0.526662 CTCGACCACAGTAGGGACAC 59.473 60.000 0.00 0.00 0.00 3.67
3294 3712 0.111832 TCGACCACAGTAGGGACACT 59.888 55.000 0.00 0.00 0.00 3.55
3295 3713 0.966920 CGACCACAGTAGGGACACTT 59.033 55.000 0.00 0.00 0.00 3.16
3296 3714 1.336887 CGACCACAGTAGGGACACTTG 60.337 57.143 0.00 0.00 0.00 3.16
3297 3715 1.968493 GACCACAGTAGGGACACTTGA 59.032 52.381 0.00 0.00 0.00 3.02
3298 3716 1.692519 ACCACAGTAGGGACACTTGAC 59.307 52.381 0.00 0.00 0.00 3.18
3299 3717 1.002087 CCACAGTAGGGACACTTGACC 59.998 57.143 0.00 0.00 0.00 4.02
3300 3718 1.691976 CACAGTAGGGACACTTGACCA 59.308 52.381 0.19 0.00 0.00 4.02
3301 3719 2.303022 CACAGTAGGGACACTTGACCAT 59.697 50.000 0.19 0.00 0.00 3.55
3302 3720 3.513912 CACAGTAGGGACACTTGACCATA 59.486 47.826 0.19 0.00 0.00 2.74
3303 3721 4.162320 CACAGTAGGGACACTTGACCATAT 59.838 45.833 0.19 0.00 30.09 1.78
3304 3722 4.162320 ACAGTAGGGACACTTGACCATATG 59.838 45.833 0.00 0.00 30.09 1.78
3305 3723 4.405680 CAGTAGGGACACTTGACCATATGA 59.594 45.833 3.65 0.00 30.09 2.15
3306 3724 5.030147 AGTAGGGACACTTGACCATATGAA 58.970 41.667 3.65 0.00 30.09 2.57
3307 3725 4.494091 AGGGACACTTGACCATATGAAG 57.506 45.455 3.65 2.67 0.00 3.02
3308 3726 4.104086 AGGGACACTTGACCATATGAAGA 58.896 43.478 3.65 0.00 0.00 2.87
3309 3727 4.536090 AGGGACACTTGACCATATGAAGAA 59.464 41.667 3.65 0.00 0.00 2.52
3310 3728 4.636206 GGGACACTTGACCATATGAAGAAC 59.364 45.833 3.65 0.00 0.00 3.01
3311 3729 4.636206 GGACACTTGACCATATGAAGAACC 59.364 45.833 3.65 3.76 0.00 3.62
3312 3730 5.241403 ACACTTGACCATATGAAGAACCA 57.759 39.130 3.65 0.00 0.00 3.67
3313 3731 5.003804 ACACTTGACCATATGAAGAACCAC 58.996 41.667 3.65 0.00 0.00 4.16
3314 3732 5.221925 ACACTTGACCATATGAAGAACCACT 60.222 40.000 3.65 0.00 0.00 4.00
3315 3733 5.352569 CACTTGACCATATGAAGAACCACTC 59.647 44.000 3.65 0.00 0.00 3.51
3316 3734 4.123497 TGACCATATGAAGAACCACTCG 57.877 45.455 3.65 0.00 0.00 4.18
3317 3735 3.118775 TGACCATATGAAGAACCACTCGG 60.119 47.826 3.65 0.00 38.77 4.63
3318 3736 3.104512 ACCATATGAAGAACCACTCGGA 58.895 45.455 3.65 0.00 35.59 4.55
3319 3737 3.133003 ACCATATGAAGAACCACTCGGAG 59.867 47.826 3.65 2.83 35.59 4.63
3320 3738 3.133003 CCATATGAAGAACCACTCGGAGT 59.867 47.826 4.45 4.45 35.59 3.85
3321 3739 4.341235 CCATATGAAGAACCACTCGGAGTA 59.659 45.833 10.87 0.00 35.59 2.59
3322 3740 5.011125 CCATATGAAGAACCACTCGGAGTAT 59.989 44.000 10.87 0.00 35.59 2.12
3323 3741 6.208797 CCATATGAAGAACCACTCGGAGTATA 59.791 42.308 10.87 3.11 35.59 1.47
3324 3742 7.255836 CCATATGAAGAACCACTCGGAGTATAA 60.256 40.741 10.87 0.00 35.59 0.98
3325 3743 5.988310 TGAAGAACCACTCGGAGTATAAA 57.012 39.130 10.87 0.00 35.59 1.40
3326 3744 6.349243 TGAAGAACCACTCGGAGTATAAAA 57.651 37.500 10.87 0.00 35.59 1.52
3327 3745 6.942976 TGAAGAACCACTCGGAGTATAAAAT 58.057 36.000 10.87 0.00 35.59 1.82
3328 3746 8.070034 TGAAGAACCACTCGGAGTATAAAATA 57.930 34.615 10.87 0.00 35.59 1.40
3329 3747 8.701895 TGAAGAACCACTCGGAGTATAAAATAT 58.298 33.333 10.87 0.00 35.59 1.28
3330 3748 9.194271 GAAGAACCACTCGGAGTATAAAATATC 57.806 37.037 10.87 1.84 35.59 1.63
3331 3749 8.480133 AGAACCACTCGGAGTATAAAATATCT 57.520 34.615 10.87 3.94 35.59 1.98
3332 3750 9.584008 AGAACCACTCGGAGTATAAAATATCTA 57.416 33.333 10.87 0.00 35.59 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
255 270 2.689471 GTGCTGATTTGGTGCCATATCA 59.311 45.455 18.56 18.56 40.33 2.15
309 342 0.105778 GAGAGGACACCTGCTATGCC 59.894 60.000 0.00 0.00 31.76 4.40
1221 1282 4.098654 ACCACAGATCGAGTAGGAATCAAG 59.901 45.833 12.85 0.00 0.00 3.02
1236 1303 3.685139 ATCGACAACAGAACCACAGAT 57.315 42.857 0.00 0.00 0.00 2.90
1254 1322 2.620585 GGCTTAACATGGAGCAGGAATC 59.379 50.000 16.46 0.00 40.63 2.52
1281 1349 5.128335 TCTCTGAATCAAGATAAGCAGAGCA 59.872 40.000 20.81 13.19 45.39 4.26
1315 1384 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1320 1389 6.705381 CAGAAATCTCTCTCTCTCTCTCTCTC 59.295 46.154 0.00 0.00 0.00 3.20
1321 1390 6.157645 ACAGAAATCTCTCTCTCTCTCTCTCT 59.842 42.308 0.00 0.00 0.00 3.10
1322 1391 6.352516 ACAGAAATCTCTCTCTCTCTCTCTC 58.647 44.000 0.00 0.00 0.00 3.20
1323 1392 6.319048 ACAGAAATCTCTCTCTCTCTCTCT 57.681 41.667 0.00 0.00 0.00 3.10
1324 1393 7.047891 TGTACAGAAATCTCTCTCTCTCTCTC 58.952 42.308 0.00 0.00 0.00 3.20
1325 1394 6.957631 TGTACAGAAATCTCTCTCTCTCTCT 58.042 40.000 0.00 0.00 0.00 3.10
1326 1395 7.336931 ACTTGTACAGAAATCTCTCTCTCTCTC 59.663 40.741 0.00 0.00 0.00 3.20
1327 1396 7.175104 ACTTGTACAGAAATCTCTCTCTCTCT 58.825 38.462 0.00 0.00 0.00 3.10
1328 1397 7.391148 ACTTGTACAGAAATCTCTCTCTCTC 57.609 40.000 0.00 0.00 0.00 3.20
1329 1398 7.669722 AGAACTTGTACAGAAATCTCTCTCTCT 59.330 37.037 0.00 0.00 0.00 3.10
1330 1399 7.826690 AGAACTTGTACAGAAATCTCTCTCTC 58.173 38.462 0.00 0.00 0.00 3.20
1331 1400 7.775053 AGAACTTGTACAGAAATCTCTCTCT 57.225 36.000 0.00 0.00 0.00 3.10
1332 1401 8.238481 CAAGAACTTGTACAGAAATCTCTCTC 57.762 38.462 6.41 0.00 35.92 3.20
1364 1434 1.201769 GCATACACAGTTGTACGCACG 60.202 52.381 0.00 0.00 44.96 5.34
1419 1493 6.708949 AGTAAAGACGAACTGCATCCTAAAAA 59.291 34.615 0.00 0.00 0.00 1.94
1420 1494 6.147164 CAGTAAAGACGAACTGCATCCTAAAA 59.853 38.462 0.00 0.00 36.96 1.52
1421 1495 5.637810 CAGTAAAGACGAACTGCATCCTAAA 59.362 40.000 0.00 0.00 36.96 1.85
1422 1496 5.168569 CAGTAAAGACGAACTGCATCCTAA 58.831 41.667 0.00 0.00 36.96 2.69
1423 1497 4.219944 ACAGTAAAGACGAACTGCATCCTA 59.780 41.667 2.52 0.00 45.65 2.94
1424 1498 3.006967 ACAGTAAAGACGAACTGCATCCT 59.993 43.478 2.52 0.00 45.65 3.24
1425 1499 3.123621 CACAGTAAAGACGAACTGCATCC 59.876 47.826 2.52 0.00 45.65 3.51
1426 1500 3.741344 ACACAGTAAAGACGAACTGCATC 59.259 43.478 2.52 0.00 45.65 3.91
1427 1501 3.494626 CACACAGTAAAGACGAACTGCAT 59.505 43.478 2.52 0.00 45.65 3.96
1428 1502 2.863740 CACACAGTAAAGACGAACTGCA 59.136 45.455 2.52 0.00 45.65 4.41
1429 1503 2.864343 ACACACAGTAAAGACGAACTGC 59.136 45.455 2.52 0.00 45.65 4.40
1430 1504 3.245284 CCACACACAGTAAAGACGAACTG 59.755 47.826 0.00 1.10 46.84 3.16
1486 1566 2.306219 TGTCCATAAATCGACACCCCAA 59.694 45.455 0.00 0.00 34.14 4.12
1491 1571 7.042658 GGTCTTCTTATGTCCATAAATCGACAC 60.043 40.741 15.96 6.29 41.56 3.67
1499 1579 5.416083 CACGTGGTCTTCTTATGTCCATAA 58.584 41.667 7.95 0.22 0.00 1.90
1534 1614 4.771590 TTCAGAAGCTTGCCAGTAATTG 57.228 40.909 2.10 0.00 0.00 2.32
1536 1616 7.651027 AAATATTCAGAAGCTTGCCAGTAAT 57.349 32.000 2.10 0.00 0.00 1.89
1537 1617 7.315142 CAAAATATTCAGAAGCTTGCCAGTAA 58.685 34.615 2.10 0.00 0.00 2.24
1538 1618 6.625740 GCAAAATATTCAGAAGCTTGCCAGTA 60.626 38.462 2.10 0.00 33.31 2.74
1539 1619 5.717119 CAAAATATTCAGAAGCTTGCCAGT 58.283 37.500 2.10 0.00 0.00 4.00
1541 1621 4.497300 GCAAAATATTCAGAAGCTTGCCA 58.503 39.130 2.10 0.00 33.31 4.92
1542 1622 3.549070 CGCAAAATATTCAGAAGCTTGCC 59.451 43.478 2.10 0.00 35.43 4.52
1546 1626 3.019564 AGGCGCAAAATATTCAGAAGCT 58.980 40.909 10.83 0.00 0.00 3.74
1547 1627 3.427161 AGGCGCAAAATATTCAGAAGC 57.573 42.857 10.83 0.00 0.00 3.86
1571 1651 2.077627 GAACTCCTCCTTCCTTTTCGC 58.922 52.381 0.00 0.00 0.00 4.70
1572 1652 2.029290 TCGAACTCCTCCTTCCTTTTCG 60.029 50.000 0.00 0.00 36.56 3.46
1573 1653 3.679824 TCGAACTCCTCCTTCCTTTTC 57.320 47.619 0.00 0.00 0.00 2.29
1574 1654 3.391626 ACTTCGAACTCCTCCTTCCTTTT 59.608 43.478 0.00 0.00 0.00 2.27
1575 1655 2.973406 ACTTCGAACTCCTCCTTCCTTT 59.027 45.455 0.00 0.00 0.00 3.11
1576 1656 2.610873 ACTTCGAACTCCTCCTTCCTT 58.389 47.619 0.00 0.00 0.00 3.36
1577 1657 2.312424 ACTTCGAACTCCTCCTTCCT 57.688 50.000 0.00 0.00 0.00 3.36
1578 1658 3.090790 ACTACTTCGAACTCCTCCTTCC 58.909 50.000 0.00 0.00 0.00 3.46
1579 1659 4.699257 TGTACTACTTCGAACTCCTCCTTC 59.301 45.833 0.00 0.00 0.00 3.46
1580 1660 4.660168 TGTACTACTTCGAACTCCTCCTT 58.340 43.478 0.00 0.00 0.00 3.36
1581 1661 4.298103 TGTACTACTTCGAACTCCTCCT 57.702 45.455 0.00 0.00 0.00 3.69
1582 1662 4.671250 CGTTGTACTACTTCGAACTCCTCC 60.671 50.000 5.91 0.00 0.00 4.30
1583 1663 4.083590 ACGTTGTACTACTTCGAACTCCTC 60.084 45.833 5.91 0.00 0.00 3.71
1585 1665 4.152607 ACGTTGTACTACTTCGAACTCC 57.847 45.455 5.91 0.00 0.00 3.85
1595 1675 4.028187 CGAAGCGGATAAACGTTGTACTAC 60.028 45.833 0.00 0.00 35.98 2.73
1602 1682 1.392510 GCTTCGAAGCGGATAAACGTT 59.607 47.619 32.36 0.00 42.88 3.99
1603 1683 0.997196 GCTTCGAAGCGGATAAACGT 59.003 50.000 32.36 0.00 42.88 3.99
1604 1684 3.781212 GCTTCGAAGCGGATAAACG 57.219 52.632 32.36 1.74 42.88 3.60
1614 1694 2.163010 ACATGGAAATGCTGCTTCGAAG 59.837 45.455 21.02 21.02 0.00 3.79
1615 1695 2.095110 CACATGGAAATGCTGCTTCGAA 60.095 45.455 0.00 0.00 0.00 3.71
1616 1696 1.469703 CACATGGAAATGCTGCTTCGA 59.530 47.619 0.00 0.00 0.00 3.71
1617 1697 1.200716 ACACATGGAAATGCTGCTTCG 59.799 47.619 0.00 0.00 0.00 3.79
1618 1698 3.248266 GAACACATGGAAATGCTGCTTC 58.752 45.455 0.00 0.00 0.00 3.86
1619 1699 2.352030 CGAACACATGGAAATGCTGCTT 60.352 45.455 0.00 0.00 0.00 3.91
1620 1700 1.200716 CGAACACATGGAAATGCTGCT 59.799 47.619 0.00 0.00 0.00 4.24
1621 1701 1.068333 ACGAACACATGGAAATGCTGC 60.068 47.619 0.00 0.00 0.00 5.25
1622 1702 2.226200 TCACGAACACATGGAAATGCTG 59.774 45.455 0.00 0.00 0.00 4.41
1623 1703 2.503331 TCACGAACACATGGAAATGCT 58.497 42.857 0.00 0.00 0.00 3.79
1631 1711 5.984627 TGTACTTCAAATCACGAACACATG 58.015 37.500 0.00 0.00 0.00 3.21
1634 1714 6.281848 TCTTGTACTTCAAATCACGAACAC 57.718 37.500 0.00 0.00 35.48 3.32
1643 1723 5.276678 CGTGTCACGTTCTTGTACTTCAAAT 60.277 40.000 17.30 0.00 36.74 2.32
1663 1743 1.735376 CTCCAGCCCGCTATACGTGT 61.735 60.000 0.00 0.00 41.42 4.49
1671 1751 2.788191 CTTTTCGACTCCAGCCCGCT 62.788 60.000 0.00 0.00 0.00 5.52
1679 1763 1.079503 AATCTGCGCTTTTCGACTCC 58.920 50.000 9.73 0.00 41.67 3.85
1683 1767 3.242903 TGAAACAAATCTGCGCTTTTCGA 60.243 39.130 9.73 0.00 41.67 3.71
1732 1840 4.035675 CCTGAGGTGAAGCGGAAAATAATC 59.964 45.833 0.00 0.00 0.00 1.75
2445 2559 0.329261 TCATCCCTGGAACAAGGCAG 59.671 55.000 0.00 0.00 40.42 4.85
2568 2682 1.608109 TGACTTGCAATGCACACGAAT 59.392 42.857 7.72 0.00 38.71 3.34
2575 2689 3.999001 TGTTTTTGTTGACTTGCAATGCA 59.001 34.783 2.72 2.72 39.03 3.96
2581 2695 8.816144 TCAAATAGATTGTTTTTGTTGACTTGC 58.184 29.630 0.00 0.00 40.11 4.01
2596 2710 7.579726 CGGCCTAAGAAGAATCAAATAGATTG 58.420 38.462 0.00 0.00 46.76 2.67
2602 2716 2.952310 GGCGGCCTAAGAAGAATCAAAT 59.048 45.455 12.87 0.00 0.00 2.32
2633 3007 2.380084 AATCGGCACTGTCATTACGT 57.620 45.000 0.00 0.00 0.00 3.57
2641 3015 3.350219 ACCAATCTAAATCGGCACTGT 57.650 42.857 0.00 0.00 0.00 3.55
2654 3028 0.853530 GGGCTGGGGAATACCAATCT 59.146 55.000 0.00 0.00 40.68 2.40
2658 3032 0.988145 CTGAGGGCTGGGGAATACCA 60.988 60.000 0.00 0.00 42.91 3.25
2670 3044 1.273327 CCAAACATGGAAACTGAGGGC 59.727 52.381 0.00 0.00 0.00 5.19
2677 3051 5.656480 ACAACTACAACCAAACATGGAAAC 58.344 37.500 1.10 0.00 0.00 2.78
2705 3079 6.279813 AGCCAATCCCTTCCATTTTCTATA 57.720 37.500 0.00 0.00 0.00 1.31
2757 3131 2.214376 TGAATCGACTGGCCCAAATT 57.786 45.000 0.00 0.00 0.00 1.82
2758 3132 2.442236 ATGAATCGACTGGCCCAAAT 57.558 45.000 0.00 0.00 0.00 2.32
2759 3133 2.214376 AATGAATCGACTGGCCCAAA 57.786 45.000 0.00 0.00 0.00 3.28
2783 3157 0.673985 TCTATCTCGCATCCAACGGG 59.326 55.000 0.00 0.00 0.00 5.28
2795 3169 7.886629 AGAATCTGATCTAGCCATCTATCTC 57.113 40.000 0.00 0.00 0.00 2.75
2825 3199 3.258372 TGAGCAGTAAAGACAGTTCGGAT 59.742 43.478 0.00 0.00 0.00 4.18
2828 3202 2.731976 GGTGAGCAGTAAAGACAGTTCG 59.268 50.000 0.00 0.00 0.00 3.95
2832 3206 4.264460 AGAAGGTGAGCAGTAAAGACAG 57.736 45.455 0.00 0.00 0.00 3.51
2871 3276 1.942586 GCGGTCGGTTAAGATGTGGTT 60.943 52.381 0.00 0.00 0.00 3.67
2949 3363 4.195334 GGGATGGCCGGTGATGCT 62.195 66.667 1.90 0.00 33.83 3.79
2951 3365 0.182537 TAAAGGGATGGCCGGTGATG 59.817 55.000 1.90 0.00 33.83 3.07
2952 3366 0.923358 TTAAAGGGATGGCCGGTGAT 59.077 50.000 1.90 0.00 33.83 3.06
2969 3387 3.495434 AATTATTCATCGCCGGGGTTA 57.505 42.857 19.13 0.00 0.00 2.85
3015 3433 5.708544 TGAGTCCGGTATTTATCTTAGGGA 58.291 41.667 0.00 0.00 0.00 4.20
3022 3440 4.246458 GGCAGATGAGTCCGGTATTTATC 58.754 47.826 0.00 0.90 0.00 1.75
3032 3450 1.139853 CTTAGGGTGGCAGATGAGTCC 59.860 57.143 0.00 0.00 0.00 3.85
3055 3473 1.627329 AGAATGGCAGCTGACTCTTCA 59.373 47.619 26.85 8.38 0.00 3.02
3064 3482 3.969976 TGGTCTATCTTAGAATGGCAGCT 59.030 43.478 0.00 0.00 36.40 4.24
3066 3484 6.166984 TCTTGGTCTATCTTAGAATGGCAG 57.833 41.667 0.00 0.00 36.40 4.85
3072 3490 7.415086 AGAAGGACTCTTGGTCTATCTTAGAA 58.585 38.462 0.00 0.00 43.97 2.10
3086 3504 0.611340 ACCGCCGTAGAAGGACTCTT 60.611 55.000 0.00 0.00 35.41 2.85
3091 3509 2.693762 CGTCACCGCCGTAGAAGGA 61.694 63.158 0.00 0.00 0.00 3.36
3104 3522 3.757493 CCCTAGGTACATATCCTCGTCAC 59.243 52.174 8.29 0.00 36.60 3.67
3105 3523 3.396946 ACCCTAGGTACATATCCTCGTCA 59.603 47.826 8.29 0.00 36.60 4.35
3106 3524 4.031636 ACCCTAGGTACATATCCTCGTC 57.968 50.000 8.29 0.00 36.60 4.20
3107 3525 4.018597 CCTACCCTAGGTACATATCCTCGT 60.019 50.000 8.29 0.00 41.18 4.18
3108 3526 4.525024 CCTACCCTAGGTACATATCCTCG 58.475 52.174 8.29 0.00 41.18 4.63
3109 3527 4.294435 ACCCTACCCTAGGTACATATCCTC 59.706 50.000 8.29 0.00 44.73 3.71
3110 3528 4.266463 ACCCTACCCTAGGTACATATCCT 58.734 47.826 8.29 0.00 44.73 3.24
3111 3529 4.294435 AGACCCTACCCTAGGTACATATCC 59.706 50.000 8.29 0.00 44.73 2.59
3112 3530 5.533333 AGACCCTACCCTAGGTACATATC 57.467 47.826 8.29 0.00 44.73 1.63
3113 3531 5.963254 AAGACCCTACCCTAGGTACATAT 57.037 43.478 8.29 0.00 44.73 1.78
3114 3532 6.695132 GCTTAAGACCCTACCCTAGGTACATA 60.695 46.154 6.67 0.00 44.73 2.29
3115 3533 5.713807 CTTAAGACCCTACCCTAGGTACAT 58.286 45.833 8.29 0.00 44.73 2.29
3116 3534 4.632159 GCTTAAGACCCTACCCTAGGTACA 60.632 50.000 6.67 0.00 44.73 2.90
3117 3535 3.894427 GCTTAAGACCCTACCCTAGGTAC 59.106 52.174 6.67 0.00 44.73 3.34
3118 3536 3.116977 GGCTTAAGACCCTACCCTAGGTA 60.117 52.174 6.67 0.00 44.73 3.08
3119 3537 2.360101 GGCTTAAGACCCTACCCTAGGT 60.360 54.545 6.67 0.00 44.73 3.08
3120 3538 2.090663 AGGCTTAAGACCCTACCCTAGG 60.091 54.545 4.17 0.06 45.81 3.02
3121 3539 2.966516 CAGGCTTAAGACCCTACCCTAG 59.033 54.545 4.17 0.00 0.00 3.02
3122 3540 2.588720 TCAGGCTTAAGACCCTACCCTA 59.411 50.000 4.17 0.00 0.00 3.53
3123 3541 1.365028 TCAGGCTTAAGACCCTACCCT 59.635 52.381 4.17 0.00 0.00 4.34
3124 3542 1.485480 GTCAGGCTTAAGACCCTACCC 59.515 57.143 4.17 0.00 0.00 3.69
3125 3543 1.485480 GGTCAGGCTTAAGACCCTACC 59.515 57.143 4.17 6.64 46.79 3.18
3126 3544 2.983907 GGTCAGGCTTAAGACCCTAC 57.016 55.000 4.17 0.52 46.79 3.18
3131 3549 3.119065 GGTGTCTAGGTCAGGCTTAAGAC 60.119 52.174 6.67 2.43 0.00 3.01
3132 3550 3.097614 GGTGTCTAGGTCAGGCTTAAGA 58.902 50.000 6.67 0.00 0.00 2.10
3133 3551 2.168728 GGGTGTCTAGGTCAGGCTTAAG 59.831 54.545 0.00 0.00 0.00 1.85
3134 3552 2.185387 GGGTGTCTAGGTCAGGCTTAA 58.815 52.381 0.00 0.00 0.00 1.85
3135 3553 1.621622 GGGGTGTCTAGGTCAGGCTTA 60.622 57.143 0.00 0.00 0.00 3.09
3136 3554 0.910088 GGGGTGTCTAGGTCAGGCTT 60.910 60.000 0.00 0.00 0.00 4.35
3137 3555 1.306226 GGGGTGTCTAGGTCAGGCT 60.306 63.158 0.00 0.00 0.00 4.58
3138 3556 0.983378 ATGGGGTGTCTAGGTCAGGC 60.983 60.000 0.00 0.00 0.00 4.85
3139 3557 1.123928 GATGGGGTGTCTAGGTCAGG 58.876 60.000 0.00 0.00 0.00 3.86
3140 3558 1.123928 GGATGGGGTGTCTAGGTCAG 58.876 60.000 0.00 0.00 0.00 3.51
3141 3559 0.415830 TGGATGGGGTGTCTAGGTCA 59.584 55.000 0.00 0.00 0.00 4.02
3142 3560 1.580059 TTGGATGGGGTGTCTAGGTC 58.420 55.000 0.00 0.00 0.00 3.85
3143 3561 1.916181 CTTTGGATGGGGTGTCTAGGT 59.084 52.381 0.00 0.00 0.00 3.08
3144 3562 2.196595 TCTTTGGATGGGGTGTCTAGG 58.803 52.381 0.00 0.00 0.00 3.02
3145 3563 5.832539 ATATCTTTGGATGGGGTGTCTAG 57.167 43.478 0.00 0.00 33.71 2.43
3146 3564 5.690097 GCAATATCTTTGGATGGGGTGTCTA 60.690 44.000 0.00 0.00 33.71 2.59
3147 3565 4.796606 CAATATCTTTGGATGGGGTGTCT 58.203 43.478 0.00 0.00 33.71 3.41
3148 3566 3.319122 GCAATATCTTTGGATGGGGTGTC 59.681 47.826 0.00 0.00 33.71 3.67
3149 3567 3.299503 GCAATATCTTTGGATGGGGTGT 58.700 45.455 0.00 0.00 33.71 4.16
3150 3568 2.629617 GGCAATATCTTTGGATGGGGTG 59.370 50.000 0.00 0.00 33.71 4.61
3151 3569 2.426268 GGGCAATATCTTTGGATGGGGT 60.426 50.000 0.00 0.00 33.71 4.95
3152 3570 2.158264 AGGGCAATATCTTTGGATGGGG 60.158 50.000 0.00 0.00 33.71 4.96
3153 3571 3.249481 AGGGCAATATCTTTGGATGGG 57.751 47.619 0.00 0.00 33.71 4.00
3154 3572 7.835682 TGATTATAGGGCAATATCTTTGGATGG 59.164 37.037 0.00 0.00 33.71 3.51
3155 3573 8.812513 TGATTATAGGGCAATATCTTTGGATG 57.187 34.615 0.00 0.00 33.71 3.51
3156 3574 9.827198 TTTGATTATAGGGCAATATCTTTGGAT 57.173 29.630 0.00 0.00 36.07 3.41
3157 3575 9.300681 CTTTGATTATAGGGCAATATCTTTGGA 57.699 33.333 0.00 0.00 0.00 3.53
3158 3576 8.031277 GCTTTGATTATAGGGCAATATCTTTGG 58.969 37.037 0.00 0.00 0.00 3.28
3159 3577 8.031277 GGCTTTGATTATAGGGCAATATCTTTG 58.969 37.037 0.00 0.00 0.00 2.77
3160 3578 7.729881 TGGCTTTGATTATAGGGCAATATCTTT 59.270 33.333 0.00 0.00 0.00 2.52
3161 3579 7.240897 TGGCTTTGATTATAGGGCAATATCTT 58.759 34.615 0.00 0.00 0.00 2.40
3162 3580 6.793478 TGGCTTTGATTATAGGGCAATATCT 58.207 36.000 0.00 0.00 0.00 1.98
3163 3581 7.651027 ATGGCTTTGATTATAGGGCAATATC 57.349 36.000 0.00 0.00 36.17 1.63
3164 3582 7.675195 TGAATGGCTTTGATTATAGGGCAATAT 59.325 33.333 0.00 0.00 36.17 1.28
3165 3583 7.009550 TGAATGGCTTTGATTATAGGGCAATA 58.990 34.615 0.00 0.00 36.17 1.90
3166 3584 5.840149 TGAATGGCTTTGATTATAGGGCAAT 59.160 36.000 0.00 0.00 36.17 3.56
3167 3585 5.207354 TGAATGGCTTTGATTATAGGGCAA 58.793 37.500 0.00 0.00 36.17 4.52
3168 3586 4.802307 TGAATGGCTTTGATTATAGGGCA 58.198 39.130 0.00 0.00 36.93 5.36
3169 3587 5.789643 TTGAATGGCTTTGATTATAGGGC 57.210 39.130 0.00 0.00 0.00 5.19
3170 3588 7.428826 GTCTTTGAATGGCTTTGATTATAGGG 58.571 38.462 0.00 0.00 0.00 3.53
3171 3589 7.068593 TGGTCTTTGAATGGCTTTGATTATAGG 59.931 37.037 0.00 0.00 0.00 2.57
3172 3590 7.999679 TGGTCTTTGAATGGCTTTGATTATAG 58.000 34.615 0.00 0.00 0.00 1.31
3173 3591 7.953005 TGGTCTTTGAATGGCTTTGATTATA 57.047 32.000 0.00 0.00 0.00 0.98
3174 3592 6.855763 TGGTCTTTGAATGGCTTTGATTAT 57.144 33.333 0.00 0.00 0.00 1.28
3175 3593 6.041409 TGTTGGTCTTTGAATGGCTTTGATTA 59.959 34.615 0.00 0.00 0.00 1.75
3176 3594 5.163322 TGTTGGTCTTTGAATGGCTTTGATT 60.163 36.000 0.00 0.00 0.00 2.57
3177 3595 4.344679 TGTTGGTCTTTGAATGGCTTTGAT 59.655 37.500 0.00 0.00 0.00 2.57
3178 3596 3.703556 TGTTGGTCTTTGAATGGCTTTGA 59.296 39.130 0.00 0.00 0.00 2.69
3179 3597 3.803778 GTGTTGGTCTTTGAATGGCTTTG 59.196 43.478 0.00 0.00 0.00 2.77
3180 3598 3.450457 TGTGTTGGTCTTTGAATGGCTTT 59.550 39.130 0.00 0.00 0.00 3.51
3181 3599 3.030291 TGTGTTGGTCTTTGAATGGCTT 58.970 40.909 0.00 0.00 0.00 4.35
3182 3600 2.665165 TGTGTTGGTCTTTGAATGGCT 58.335 42.857 0.00 0.00 0.00 4.75
3183 3601 3.451141 TTGTGTTGGTCTTTGAATGGC 57.549 42.857 0.00 0.00 0.00 4.40
3184 3602 5.009854 ACTTTGTGTTGGTCTTTGAATGG 57.990 39.130 0.00 0.00 0.00 3.16
3185 3603 5.977129 GGTACTTTGTGTTGGTCTTTGAATG 59.023 40.000 0.00 0.00 0.00 2.67
3186 3604 5.220970 CGGTACTTTGTGTTGGTCTTTGAAT 60.221 40.000 0.00 0.00 0.00 2.57
3187 3605 4.095185 CGGTACTTTGTGTTGGTCTTTGAA 59.905 41.667 0.00 0.00 0.00 2.69
3188 3606 3.623960 CGGTACTTTGTGTTGGTCTTTGA 59.376 43.478 0.00 0.00 0.00 2.69
3189 3607 3.623960 TCGGTACTTTGTGTTGGTCTTTG 59.376 43.478 0.00 0.00 0.00 2.77
3190 3608 3.624410 GTCGGTACTTTGTGTTGGTCTTT 59.376 43.478 0.00 0.00 0.00 2.52
3191 3609 3.118519 AGTCGGTACTTTGTGTTGGTCTT 60.119 43.478 0.00 0.00 29.00 3.01
3192 3610 2.433239 AGTCGGTACTTTGTGTTGGTCT 59.567 45.455 0.00 0.00 29.00 3.85
3193 3611 2.542595 CAGTCGGTACTTTGTGTTGGTC 59.457 50.000 0.00 0.00 31.97 4.02
3194 3612 2.557317 CAGTCGGTACTTTGTGTTGGT 58.443 47.619 0.00 0.00 31.97 3.67
3195 3613 1.871039 CCAGTCGGTACTTTGTGTTGG 59.129 52.381 0.00 0.00 31.97 3.77
3196 3614 2.828877 TCCAGTCGGTACTTTGTGTTG 58.171 47.619 0.00 0.00 31.97 3.33
3197 3615 3.547054 TTCCAGTCGGTACTTTGTGTT 57.453 42.857 0.00 0.00 31.97 3.32
3198 3616 3.070446 TGATTCCAGTCGGTACTTTGTGT 59.930 43.478 0.00 0.00 31.97 3.72
3199 3617 3.432252 GTGATTCCAGTCGGTACTTTGTG 59.568 47.826 0.00 0.00 31.97 3.33
3200 3618 3.556423 GGTGATTCCAGTCGGTACTTTGT 60.556 47.826 0.00 0.00 31.97 2.83
3201 3619 3.000727 GGTGATTCCAGTCGGTACTTTG 58.999 50.000 0.00 0.00 31.97 2.77
3202 3620 2.904434 AGGTGATTCCAGTCGGTACTTT 59.096 45.455 0.00 0.00 39.02 2.66
3203 3621 2.537143 AGGTGATTCCAGTCGGTACTT 58.463 47.619 0.00 0.00 39.02 2.24
3204 3622 2.233305 AGGTGATTCCAGTCGGTACT 57.767 50.000 0.00 0.00 39.02 2.73
3205 3623 2.232941 TCAAGGTGATTCCAGTCGGTAC 59.767 50.000 0.00 0.00 39.02 3.34
3206 3624 2.531771 TCAAGGTGATTCCAGTCGGTA 58.468 47.619 0.00 0.00 39.02 4.02
3207 3625 1.348064 TCAAGGTGATTCCAGTCGGT 58.652 50.000 0.00 0.00 39.02 4.69
3208 3626 2.289694 ACTTCAAGGTGATTCCAGTCGG 60.290 50.000 0.00 0.00 39.02 4.79
3209 3627 2.738846 CACTTCAAGGTGATTCCAGTCG 59.261 50.000 0.00 0.00 39.34 4.18
3210 3628 2.485814 GCACTTCAAGGTGATTCCAGTC 59.514 50.000 0.00 0.00 39.34 3.51
3211 3629 2.158623 TGCACTTCAAGGTGATTCCAGT 60.159 45.455 0.00 0.00 39.34 4.00
3212 3630 2.507484 TGCACTTCAAGGTGATTCCAG 58.493 47.619 0.00 0.00 39.34 3.86
3213 3631 2.655090 TGCACTTCAAGGTGATTCCA 57.345 45.000 0.00 0.00 39.34 3.53
3214 3632 3.119352 GGATTGCACTTCAAGGTGATTCC 60.119 47.826 0.00 0.00 39.34 3.01
3215 3633 3.507233 TGGATTGCACTTCAAGGTGATTC 59.493 43.478 0.00 0.00 39.34 2.52
3216 3634 3.256631 GTGGATTGCACTTCAAGGTGATT 59.743 43.478 0.45 0.00 39.34 2.57
3217 3635 2.821969 GTGGATTGCACTTCAAGGTGAT 59.178 45.455 0.45 0.00 39.34 3.06
3218 3636 2.158623 AGTGGATTGCACTTCAAGGTGA 60.159 45.455 4.82 0.00 39.34 4.02
3219 3637 2.227388 GAGTGGATTGCACTTCAAGGTG 59.773 50.000 12.38 0.00 38.22 4.00
3220 3638 2.508526 GAGTGGATTGCACTTCAAGGT 58.491 47.619 12.38 0.00 38.22 3.50
3221 3639 1.466167 CGAGTGGATTGCACTTCAAGG 59.534 52.381 12.38 0.00 38.22 3.61
3222 3640 2.158449 GTCGAGTGGATTGCACTTCAAG 59.842 50.000 12.38 5.25 38.22 3.02
3223 3641 2.143122 GTCGAGTGGATTGCACTTCAA 58.857 47.619 12.38 0.00 39.32 2.69
3224 3642 1.069978 TGTCGAGTGGATTGCACTTCA 59.930 47.619 12.38 9.35 32.33 3.02
3225 3643 1.728971 CTGTCGAGTGGATTGCACTTC 59.271 52.381 12.38 7.10 32.33 3.01
3226 3644 1.344438 TCTGTCGAGTGGATTGCACTT 59.656 47.619 12.38 0.00 32.33 3.16
3227 3645 0.969149 TCTGTCGAGTGGATTGCACT 59.031 50.000 10.90 10.90 35.30 4.40
3228 3646 1.728971 CTTCTGTCGAGTGGATTGCAC 59.271 52.381 0.00 0.00 0.00 4.57
3229 3647 1.618343 TCTTCTGTCGAGTGGATTGCA 59.382 47.619 0.00 0.00 0.00 4.08
3230 3648 1.996191 GTCTTCTGTCGAGTGGATTGC 59.004 52.381 0.00 0.00 0.00 3.56
3231 3649 3.506810 GAGTCTTCTGTCGAGTGGATTG 58.493 50.000 0.00 0.00 0.00 2.67
3232 3650 2.494073 GGAGTCTTCTGTCGAGTGGATT 59.506 50.000 0.00 0.00 0.00 3.01
3233 3651 2.096248 GGAGTCTTCTGTCGAGTGGAT 58.904 52.381 0.00 0.00 0.00 3.41
3234 3652 1.202891 TGGAGTCTTCTGTCGAGTGGA 60.203 52.381 0.00 0.00 0.00 4.02
3235 3653 1.248486 TGGAGTCTTCTGTCGAGTGG 58.752 55.000 0.00 0.00 0.00 4.00
3236 3654 3.506810 GAATGGAGTCTTCTGTCGAGTG 58.493 50.000 0.00 0.00 0.00 3.51
3237 3655 2.162608 CGAATGGAGTCTTCTGTCGAGT 59.837 50.000 0.00 0.00 0.00 4.18
3238 3656 2.478709 CCGAATGGAGTCTTCTGTCGAG 60.479 54.545 5.81 0.00 37.49 4.04
3239 3657 1.472878 CCGAATGGAGTCTTCTGTCGA 59.527 52.381 5.81 0.00 37.49 4.20
3240 3658 1.472878 TCCGAATGGAGTCTTCTGTCG 59.527 52.381 0.00 0.00 40.17 4.35
3252 3670 5.072741 AGTGAAATTGGGATATCCGAATGG 58.927 41.667 26.97 0.00 42.50 3.16
3253 3671 5.106948 CGAGTGAAATTGGGATATCCGAATG 60.107 44.000 26.97 12.66 42.50 2.67
3254 3672 4.997395 CGAGTGAAATTGGGATATCCGAAT 59.003 41.667 22.44 22.44 44.72 3.34
3255 3673 4.100344 TCGAGTGAAATTGGGATATCCGAA 59.900 41.667 20.03 20.03 38.11 4.30
3256 3674 3.639561 TCGAGTGAAATTGGGATATCCGA 59.360 43.478 15.69 9.20 38.76 4.55
3257 3675 3.741344 GTCGAGTGAAATTGGGATATCCG 59.259 47.826 15.69 0.00 38.76 4.18
3258 3676 4.065789 GGTCGAGTGAAATTGGGATATCC 58.934 47.826 13.87 13.87 0.00 2.59
3259 3677 4.511826 GTGGTCGAGTGAAATTGGGATATC 59.488 45.833 0.00 0.00 0.00 1.63
3260 3678 4.080582 TGTGGTCGAGTGAAATTGGGATAT 60.081 41.667 0.00 0.00 0.00 1.63
3261 3679 3.262151 TGTGGTCGAGTGAAATTGGGATA 59.738 43.478 0.00 0.00 0.00 2.59
3262 3680 2.039746 TGTGGTCGAGTGAAATTGGGAT 59.960 45.455 0.00 0.00 0.00 3.85
3263 3681 1.418264 TGTGGTCGAGTGAAATTGGGA 59.582 47.619 0.00 0.00 0.00 4.37
3264 3682 1.806542 CTGTGGTCGAGTGAAATTGGG 59.193 52.381 0.00 0.00 0.00 4.12
3265 3683 2.494059 ACTGTGGTCGAGTGAAATTGG 58.506 47.619 0.00 0.00 0.00 3.16
3266 3684 3.679980 CCTACTGTGGTCGAGTGAAATTG 59.320 47.826 0.00 0.00 0.00 2.32
3267 3685 3.306780 CCCTACTGTGGTCGAGTGAAATT 60.307 47.826 0.00 0.00 0.00 1.82
3268 3686 2.233922 CCCTACTGTGGTCGAGTGAAAT 59.766 50.000 0.00 0.00 0.00 2.17
3269 3687 1.616865 CCCTACTGTGGTCGAGTGAAA 59.383 52.381 0.00 0.00 0.00 2.69
3270 3688 1.202964 TCCCTACTGTGGTCGAGTGAA 60.203 52.381 0.00 0.00 0.00 3.18
3271 3689 0.402887 TCCCTACTGTGGTCGAGTGA 59.597 55.000 0.00 0.00 0.00 3.41
3272 3690 0.526662 GTCCCTACTGTGGTCGAGTG 59.473 60.000 0.00 0.00 0.00 3.51
3273 3691 0.111832 TGTCCCTACTGTGGTCGAGT 59.888 55.000 0.00 0.00 0.00 4.18
3274 3692 0.526662 GTGTCCCTACTGTGGTCGAG 59.473 60.000 0.00 0.00 0.00 4.04
3275 3693 0.111832 AGTGTCCCTACTGTGGTCGA 59.888 55.000 0.00 0.00 0.00 4.20
3276 3694 0.966920 AAGTGTCCCTACTGTGGTCG 59.033 55.000 0.00 0.00 0.00 4.79
3277 3695 1.968493 TCAAGTGTCCCTACTGTGGTC 59.032 52.381 0.00 0.00 0.00 4.02
3278 3696 1.692519 GTCAAGTGTCCCTACTGTGGT 59.307 52.381 0.00 0.00 0.00 4.16
3279 3697 1.002087 GGTCAAGTGTCCCTACTGTGG 59.998 57.143 0.00 0.00 0.00 4.17
3280 3698 1.691976 TGGTCAAGTGTCCCTACTGTG 59.308 52.381 0.00 0.00 0.00 3.66
3281 3699 2.097110 TGGTCAAGTGTCCCTACTGT 57.903 50.000 0.00 0.00 0.00 3.55
3282 3700 4.405680 TCATATGGTCAAGTGTCCCTACTG 59.594 45.833 2.13 0.00 0.00 2.74
3283 3701 4.620723 TCATATGGTCAAGTGTCCCTACT 58.379 43.478 2.13 0.00 0.00 2.57
3284 3702 5.128827 TCTTCATATGGTCAAGTGTCCCTAC 59.871 44.000 2.13 0.00 0.00 3.18
3285 3703 5.277250 TCTTCATATGGTCAAGTGTCCCTA 58.723 41.667 2.13 0.00 0.00 3.53
3286 3704 4.104086 TCTTCATATGGTCAAGTGTCCCT 58.896 43.478 2.13 0.00 0.00 4.20
3287 3705 4.487714 TCTTCATATGGTCAAGTGTCCC 57.512 45.455 2.13 0.00 0.00 4.46
3288 3706 4.636206 GGTTCTTCATATGGTCAAGTGTCC 59.364 45.833 2.13 1.66 0.00 4.02
3289 3707 5.122396 GTGGTTCTTCATATGGTCAAGTGTC 59.878 44.000 2.13 0.00 0.00 3.67
3290 3708 5.003804 GTGGTTCTTCATATGGTCAAGTGT 58.996 41.667 2.13 0.00 0.00 3.55
3291 3709 5.248640 AGTGGTTCTTCATATGGTCAAGTG 58.751 41.667 2.13 0.00 0.00 3.16
3292 3710 5.491982 GAGTGGTTCTTCATATGGTCAAGT 58.508 41.667 2.13 0.00 0.00 3.16
3293 3711 4.568359 CGAGTGGTTCTTCATATGGTCAAG 59.432 45.833 2.13 0.00 0.00 3.02
3294 3712 4.503910 CGAGTGGTTCTTCATATGGTCAA 58.496 43.478 2.13 0.00 0.00 3.18
3295 3713 3.118775 CCGAGTGGTTCTTCATATGGTCA 60.119 47.826 2.13 0.00 0.00 4.02
3296 3714 3.132289 TCCGAGTGGTTCTTCATATGGTC 59.868 47.826 2.13 0.00 36.30 4.02
3297 3715 3.104512 TCCGAGTGGTTCTTCATATGGT 58.895 45.455 2.13 0.00 36.30 3.55
3298 3716 3.133003 ACTCCGAGTGGTTCTTCATATGG 59.867 47.826 0.00 0.00 36.30 2.74
3299 3717 4.392921 ACTCCGAGTGGTTCTTCATATG 57.607 45.455 0.00 0.00 36.30 1.78
3300 3718 7.834881 TTATACTCCGAGTGGTTCTTCATAT 57.165 36.000 11.52 0.00 36.30 1.78
3301 3719 7.649533 TTTATACTCCGAGTGGTTCTTCATA 57.350 36.000 11.52 0.00 36.30 2.15
3302 3720 6.540438 TTTATACTCCGAGTGGTTCTTCAT 57.460 37.500 11.52 0.00 36.30 2.57
3303 3721 5.988310 TTTATACTCCGAGTGGTTCTTCA 57.012 39.130 11.52 0.00 36.30 3.02
3304 3722 9.194271 GATATTTTATACTCCGAGTGGTTCTTC 57.806 37.037 11.52 0.00 36.30 2.87
3305 3723 8.925338 AGATATTTTATACTCCGAGTGGTTCTT 58.075 33.333 11.52 0.00 36.30 2.52
3306 3724 8.480133 AGATATTTTATACTCCGAGTGGTTCT 57.520 34.615 11.52 0.33 36.30 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.