Multiple sequence alignment - TraesCS7B01G271900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G271900 chr7B 100.000 3623 0 0 3495 7117 498886612 498890234 0.000000e+00 6691.0
1 TraesCS7B01G271900 chr7B 100.000 3074 0 0 1 3074 498883118 498886191 0.000000e+00 5677.0
2 TraesCS7B01G271900 chr7B 95.210 835 38 2 6283 7116 716270451 716269618 0.000000e+00 1319.0
3 TraesCS7B01G271900 chr7B 90.685 365 27 2 173 530 623109225 623108861 4.990000e-131 479.0
4 TraesCS7B01G271900 chr7B 93.194 191 12 1 1 190 623109431 623109241 5.440000e-71 279.0
5 TraesCS7B01G271900 chr7B 93.827 81 5 0 676 756 7091304 7091224 9.700000e-24 122.0
6 TraesCS7B01G271900 chr7B 90.244 82 8 0 674 755 620567978 620567897 2.710000e-19 108.0
7 TraesCS7B01G271900 chr7B 90.244 82 8 0 674 755 676796289 676796208 2.710000e-19 108.0
8 TraesCS7B01G271900 chr7B 89.024 82 9 0 674 755 453042214 453042133 1.260000e-17 102.0
9 TraesCS7B01G271900 chr7D 94.658 2677 109 12 3530 6206 475147476 475150118 0.000000e+00 4120.0
10 TraesCS7B01G271900 chr7D 89.550 2402 127 49 751 3074 475145093 475147448 0.000000e+00 2931.0
11 TraesCS7B01G271900 chr7D 95.232 839 35 2 6283 7116 73132144 73131306 0.000000e+00 1323.0
12 TraesCS7B01G271900 chr7D 86.908 359 18 7 173 524 110090523 110090187 6.740000e-100 375.0
13 TraesCS7B01G271900 chr7A 93.223 2597 125 23 3530 6110 520906596 520904035 0.000000e+00 3773.0
14 TraesCS7B01G271900 chr7A 86.457 1942 131 44 1188 3074 520908488 520906624 0.000000e+00 2008.0
15 TraesCS7B01G271900 chr7A 88.951 534 26 12 1 530 32699700 32700204 4.690000e-176 628.0
16 TraesCS7B01G271900 chr7A 87.778 270 24 6 754 1015 520916197 520915929 2.490000e-79 307.0
17 TraesCS7B01G271900 chr7A 88.995 209 14 6 956 1158 520908935 520908730 4.260000e-62 250.0
18 TraesCS7B01G271900 chr7A 94.375 160 7 2 34 191 254261926 254262085 1.980000e-60 244.0
19 TraesCS7B01G271900 chr7A 100.000 31 0 0 3496 3526 520906602 520906572 2.770000e-04 58.4
20 TraesCS7B01G271900 chr5D 94.391 927 37 4 6204 7116 393902505 393901580 0.000000e+00 1410.0
21 TraesCS7B01G271900 chr5D 96.168 835 31 1 6283 7116 30614023 30614857 0.000000e+00 1363.0
22 TraesCS7B01G271900 chr5D 85.158 539 43 17 1 530 112922702 112922192 1.060000e-142 518.0
23 TraesCS7B01G271900 chr5D 87.320 347 19 7 173 518 114805195 114804873 2.420000e-99 374.0
24 TraesCS7B01G271900 chr5D 81.818 352 51 10 6203 6547 159641962 159641617 4.200000e-72 283.0
25 TraesCS7B01G271900 chr5D 85.321 218 20 10 545 757 321796298 321796508 1.550000e-51 215.0
26 TraesCS7B01G271900 chr5D 100.000 28 0 0 2330 2357 539822953 539822926 1.300000e-02 52.8
27 TraesCS7B01G271900 chr6B 95.689 835 35 1 6283 7116 715318170 715319004 0.000000e+00 1341.0
28 TraesCS7B01G271900 chr6B 91.713 362 18 5 173 524 710280634 710280993 6.410000e-135 492.0
29 TraesCS7B01G271900 chr6B 88.095 84 10 0 677 760 558507022 558506939 4.540000e-17 100.0
30 TraesCS7B01G271900 chr6B 89.706 68 5 2 698 763 35062608 35062541 1.270000e-12 86.1
31 TraesCS7B01G271900 chr1D 95.449 835 36 2 6283 7116 17122931 17122098 0.000000e+00 1330.0
32 TraesCS7B01G271900 chr1D 95.215 836 39 1 6283 7117 475207997 475208832 0.000000e+00 1321.0
33 TraesCS7B01G271900 chr1D 87.978 183 22 0 1 183 318163783 318163965 4.320000e-52 217.0
34 TraesCS7B01G271900 chr6D 95.647 827 35 1 6283 7108 69745660 69746486 0.000000e+00 1327.0
35 TraesCS7B01G271900 chr6D 92.857 364 17 2 173 530 443351620 443351260 2.940000e-143 520.0
36 TraesCS7B01G271900 chr6D 90.107 374 17 6 173 530 443452744 443452375 1.080000e-127 468.0
37 TraesCS7B01G271900 chr6D 94.271 192 10 1 1 191 443351850 443351659 6.980000e-75 292.0
38 TraesCS7B01G271900 chr6D 94.271 192 10 1 1 191 443452959 443452768 6.980000e-75 292.0
39 TraesCS7B01G271900 chr6D 83.203 256 39 4 6203 6455 464394733 464394987 1.540000e-56 231.0
40 TraesCS7B01G271900 chr6D 98.780 82 1 0 6201 6282 53763985 53763904 5.750000e-31 147.0
41 TraesCS7B01G271900 chr2B 95.090 835 40 1 6283 7116 788089781 788090615 0.000000e+00 1314.0
42 TraesCS7B01G271900 chr2B 80.899 178 25 6 587 755 145378735 145378912 1.610000e-26 132.0
43 TraesCS7B01G271900 chr6A 92.471 425 24 3 1 425 518395856 518396272 1.020000e-167 601.0
44 TraesCS7B01G271900 chr6A 81.413 269 19 14 6193 6430 154045003 154045271 2.620000e-44 191.0
45 TraesCS7B01G271900 chr6A 97.619 84 2 0 6199 6282 4545099 4545182 2.070000e-30 145.0
46 TraesCS7B01G271900 chr6A 91.379 58 5 0 698 755 15636236 15636293 5.920000e-11 80.5
47 TraesCS7B01G271900 chr2A 86.679 533 39 18 1 530 370217417 370216914 4.820000e-156 562.0
48 TraesCS7B01G271900 chr2A 86.735 98 11 1 660 755 777177151 777177248 2.710000e-19 108.0
49 TraesCS7B01G271900 chr5B 90.489 368 17 6 173 524 311484802 311484437 3.010000e-128 470.0
50 TraesCS7B01G271900 chr5B 91.262 103 7 2 6181 6282 590309398 590309499 9.630000e-29 139.0
51 TraesCS7B01G271900 chr1B 91.254 343 19 4 173 505 620418823 620418482 2.340000e-124 457.0
52 TraesCS7B01G271900 chr1B 91.935 62 5 0 698 759 55530434 55530373 3.540000e-13 87.9
53 TraesCS7B01G271900 chr1B 93.220 59 4 0 698 756 684619001 684619059 3.540000e-13 87.9
54 TraesCS7B01G271900 chr1B 93.103 58 4 0 698 755 52568776 52568833 1.270000e-12 86.1
55 TraesCS7B01G271900 chr2D 95.312 192 8 1 1 191 79516985 79517176 3.230000e-78 303.0
56 TraesCS7B01G271900 chr2D 96.273 161 6 0 173 333 79517194 79517354 1.520000e-66 265.0
57 TraesCS7B01G271900 chr2D 85.165 182 17 5 351 530 79523093 79523266 2.040000e-40 178.0
58 TraesCS7B01G271900 chr2D 89.583 144 7 8 545 683 134405127 134404987 7.340000e-40 176.0
59 TraesCS7B01G271900 chr4B 95.181 166 5 2 545 709 668989492 668989655 7.080000e-65 259.0
60 TraesCS7B01G271900 chr4B 95.181 166 5 3 545 709 669306035 669305872 7.080000e-65 259.0
61 TraesCS7B01G271900 chr4B 93.976 166 7 2 545 709 669144594 669144431 1.530000e-61 248.0
62 TraesCS7B01G271900 chr4B 92.771 83 6 0 674 756 42533004 42532922 3.490000e-23 121.0
63 TraesCS7B01G271900 chr4B 88.764 89 9 1 674 762 42532873 42532786 2.710000e-19 108.0
64 TraesCS7B01G271900 chr4B 93.333 60 4 0 698 757 24342009 24342068 9.830000e-14 89.8
65 TraesCS7B01G271900 chr4B 91.379 58 5 0 698 755 145533018 145532961 5.920000e-11 80.5
66 TraesCS7B01G271900 chr4B 91.379 58 5 0 698 755 524170818 524170875 5.920000e-11 80.5
67 TraesCS7B01G271900 chr3A 87.912 182 17 3 6204 6381 104503127 104502947 7.230000e-50 209.0
68 TraesCS7B01G271900 chr3D 89.017 173 10 7 537 703 147169043 147169212 9.360000e-49 206.0
69 TraesCS7B01G271900 chr3D 82.558 258 15 15 6203 6430 577569242 577568985 4.350000e-47 200.0
70 TraesCS7B01G271900 chr3D 88.095 168 14 5 545 709 90918962 90918798 2.030000e-45 195.0
71 TraesCS7B01G271900 chr4D 89.024 164 11 6 545 703 66307062 66306901 5.630000e-46 196.0
72 TraesCS7B01G271900 chr3B 98.795 83 1 0 6200 6282 824253995 824254077 1.600000e-31 148.0
73 TraesCS7B01G271900 chr5A 91.463 82 7 0 674 755 442307296 442307377 5.840000e-21 113.0
74 TraesCS7B01G271900 chr4A 91.463 82 7 0 674 755 688491796 688491715 5.840000e-21 113.0
75 TraesCS7B01G271900 chr4A 90.476 84 8 0 675 758 34536212 34536129 2.100000e-20 111.0
76 TraesCS7B01G271900 chr1A 86.170 94 12 1 662 755 6078236 6078328 4.540000e-17 100.0
77 TraesCS7B01G271900 chrUn 90.909 66 6 0 690 755 117268965 117268900 9.830000e-14 89.8
78 TraesCS7B01G271900 chrUn 91.667 60 5 0 698 757 283591593 283591534 4.580000e-12 84.2
79 TraesCS7B01G271900 chrUn 86.111 72 8 1 698 767 31639131 31639202 7.660000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G271900 chr7B 498883118 498890234 7116 False 6184.00 6691 100.00000 1 7117 2 chr7B.!!$F1 7116
1 TraesCS7B01G271900 chr7B 716269618 716270451 833 True 1319.00 1319 95.21000 6283 7116 1 chr7B.!!$R5 833
2 TraesCS7B01G271900 chr7B 623108861 623109431 570 True 379.00 479 91.93950 1 530 2 chr7B.!!$R6 529
3 TraesCS7B01G271900 chr7D 475145093 475150118 5025 False 3525.50 4120 92.10400 751 6206 2 chr7D.!!$F1 5455
4 TraesCS7B01G271900 chr7D 73131306 73132144 838 True 1323.00 1323 95.23200 6283 7116 1 chr7D.!!$R1 833
5 TraesCS7B01G271900 chr7A 520904035 520908935 4900 True 1522.35 3773 92.16875 956 6110 4 chr7A.!!$R2 5154
6 TraesCS7B01G271900 chr7A 32699700 32700204 504 False 628.00 628 88.95100 1 530 1 chr7A.!!$F1 529
7 TraesCS7B01G271900 chr5D 393901580 393902505 925 True 1410.00 1410 94.39100 6204 7116 1 chr5D.!!$R4 912
8 TraesCS7B01G271900 chr5D 30614023 30614857 834 False 1363.00 1363 96.16800 6283 7116 1 chr5D.!!$F1 833
9 TraesCS7B01G271900 chr5D 112922192 112922702 510 True 518.00 518 85.15800 1 530 1 chr5D.!!$R1 529
10 TraesCS7B01G271900 chr6B 715318170 715319004 834 False 1341.00 1341 95.68900 6283 7116 1 chr6B.!!$F2 833
11 TraesCS7B01G271900 chr1D 17122098 17122931 833 True 1330.00 1330 95.44900 6283 7116 1 chr1D.!!$R1 833
12 TraesCS7B01G271900 chr1D 475207997 475208832 835 False 1321.00 1321 95.21500 6283 7117 1 chr1D.!!$F2 834
13 TraesCS7B01G271900 chr6D 69745660 69746486 826 False 1327.00 1327 95.64700 6283 7108 1 chr6D.!!$F1 825
14 TraesCS7B01G271900 chr6D 443351260 443351850 590 True 406.00 520 93.56400 1 530 2 chr6D.!!$R2 529
15 TraesCS7B01G271900 chr6D 443452375 443452959 584 True 380.00 468 92.18900 1 530 2 chr6D.!!$R3 529
16 TraesCS7B01G271900 chr2B 788089781 788090615 834 False 1314.00 1314 95.09000 6283 7116 1 chr2B.!!$F2 833
17 TraesCS7B01G271900 chr2A 370216914 370217417 503 True 562.00 562 86.67900 1 530 1 chr2A.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 671 0.106918 ACGAAAACCAACAGGGAGCA 60.107 50.000 0.00 0.0 41.15 4.26 F
543 672 0.310854 CGAAAACCAACAGGGAGCAC 59.689 55.000 0.00 0.0 41.15 4.40 F
1586 1962 0.036765 CGAAACTGGGATGGACGGAA 60.037 55.000 0.00 0.0 0.00 4.30 F
3528 3977 0.325933 CCAGACATGTCCTTCCTGCA 59.674 55.000 22.21 0.0 0.00 4.41 F
3529 3978 1.064906 CCAGACATGTCCTTCCTGCAT 60.065 52.381 22.21 0.0 0.00 3.96 F
4493 4959 0.247185 ATGGCAATGTGGAAAAGGCG 59.753 50.000 0.00 0.0 0.00 5.52 F
4495 4961 0.388520 GGCAATGTGGAAAAGGCGAC 60.389 55.000 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1939 0.392595 GTCCATCCCAGTTTCGTCCC 60.393 60.000 0.00 0.0 0.00 4.46 R
1615 1991 1.063266 TCCTTTTGAGGCTGGGTTTGT 60.063 47.619 0.00 0.0 0.00 2.83 R
3547 3996 0.771127 TGGGTGTCTTGGAAGGAAGG 59.229 55.000 0.00 0.0 0.00 3.46 R
4487 4953 0.600255 CGGTTGTCTCTGTCGCCTTT 60.600 55.000 0.00 0.0 0.00 3.11 R
4589 5055 0.764890 CTGACCTCCCTGTGTTTCCA 59.235 55.000 0.00 0.0 0.00 3.53 R
6035 6521 0.038159 ACAAGGCAGTAGCGACACTC 60.038 55.000 0.00 0.0 43.41 3.51 R
6326 6825 0.394192 TATCTGCGCCCCTTCATCAG 59.606 55.000 4.18 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.457496 CCCCGACGACTGCAGCAT 62.457 66.667 15.27 0.00 0.00 3.79
110 111 1.649267 CATCGACGAGATCTGCCGA 59.351 57.895 10.50 11.04 37.52 5.54
171 215 5.068460 GGCTGATTCTACAGAGAAGCTTCTA 59.932 44.000 28.53 12.47 46.30 2.10
172 216 5.977129 GCTGATTCTACAGAGAAGCTTCTAC 59.023 44.000 28.53 20.33 46.30 2.59
173 217 6.183360 GCTGATTCTACAGAGAAGCTTCTACT 60.183 42.308 28.53 22.04 46.30 2.57
174 218 7.630513 GCTGATTCTACAGAGAAGCTTCTACTT 60.631 40.741 28.53 16.89 46.30 2.24
175 219 7.767261 TGATTCTACAGAGAAGCTTCTACTTC 58.233 38.462 28.53 16.24 46.30 3.01
195 303 0.121197 TTCCTCCCCTCTTCCATGGT 59.879 55.000 12.58 0.00 0.00 3.55
456 581 2.775856 GCGACATCGAGGAGAGGCA 61.776 63.158 3.06 0.00 43.02 4.75
485 610 1.419381 GAGAGGGAGGAGTTGGATCC 58.581 60.000 4.20 4.20 39.89 3.36
530 659 0.250338 AGGGAGCACTGGACGAAAAC 60.250 55.000 0.00 0.00 0.00 2.43
531 660 1.235281 GGGAGCACTGGACGAAAACC 61.235 60.000 0.00 0.00 0.00 3.27
532 661 0.534203 GGAGCACTGGACGAAAACCA 60.534 55.000 0.00 0.00 35.96 3.67
533 662 1.305201 GAGCACTGGACGAAAACCAA 58.695 50.000 0.00 0.00 36.95 3.67
534 663 1.002792 GAGCACTGGACGAAAACCAAC 60.003 52.381 0.00 0.00 36.95 3.77
535 664 0.736053 GCACTGGACGAAAACCAACA 59.264 50.000 0.00 0.00 36.95 3.33
536 665 1.268539 GCACTGGACGAAAACCAACAG 60.269 52.381 0.00 0.00 36.95 3.16
537 666 1.333619 CACTGGACGAAAACCAACAGG 59.666 52.381 0.00 0.00 36.95 4.00
538 667 0.951558 CTGGACGAAAACCAACAGGG 59.048 55.000 0.00 0.00 44.81 4.45
539 668 0.547075 TGGACGAAAACCAACAGGGA 59.453 50.000 0.00 0.00 41.15 4.20
540 669 1.235724 GGACGAAAACCAACAGGGAG 58.764 55.000 0.00 0.00 41.15 4.30
541 670 0.591659 GACGAAAACCAACAGGGAGC 59.408 55.000 0.00 0.00 41.15 4.70
542 671 0.106918 ACGAAAACCAACAGGGAGCA 60.107 50.000 0.00 0.00 41.15 4.26
543 672 0.310854 CGAAAACCAACAGGGAGCAC 59.689 55.000 0.00 0.00 41.15 4.40
544 673 0.310854 GAAAACCAACAGGGAGCACG 59.689 55.000 0.00 0.00 41.15 5.34
545 674 1.106944 AAAACCAACAGGGAGCACGG 61.107 55.000 0.00 0.00 41.15 4.94
546 675 2.976494 AAACCAACAGGGAGCACGGG 62.976 60.000 0.00 0.00 41.15 5.28
547 676 4.722700 CCAACAGGGAGCACGGGG 62.723 72.222 0.00 0.00 40.01 5.73
548 677 4.722700 CAACAGGGAGCACGGGGG 62.723 72.222 0.00 0.00 0.00 5.40
576 705 4.191015 GGAACGGGAGATGGGGGC 62.191 72.222 0.00 0.00 0.00 5.80
577 706 4.547367 GAACGGGAGATGGGGGCG 62.547 72.222 0.00 0.00 0.00 6.13
590 719 4.516195 GGGCGACGGCTTCTCCTC 62.516 72.222 21.48 0.00 39.81 3.71
591 720 4.856607 GGCGACGGCTTCTCCTCG 62.857 72.222 15.00 0.00 39.81 4.63
592 721 3.812019 GCGACGGCTTCTCCTCGA 61.812 66.667 0.00 0.00 37.55 4.04
593 722 2.405594 CGACGGCTTCTCCTCGAG 59.594 66.667 5.13 5.13 37.55 4.04
594 723 2.802106 GACGGCTTCTCCTCGAGG 59.198 66.667 26.32 26.32 0.00 4.63
595 724 2.756283 ACGGCTTCTCCTCGAGGG 60.756 66.667 30.80 20.79 35.41 4.30
596 725 3.532155 CGGCTTCTCCTCGAGGGG 61.532 72.222 30.80 28.77 36.88 4.79
597 726 2.042843 GGCTTCTCCTCGAGGGGA 60.043 66.667 30.72 30.72 44.53 4.81
598 727 1.458588 GGCTTCTCCTCGAGGGGAT 60.459 63.158 34.24 0.00 45.73 3.85
599 728 1.468506 GGCTTCTCCTCGAGGGGATC 61.469 65.000 34.24 26.19 45.73 3.36
610 739 1.455248 GAGGGGATCGATACGAGAGG 58.545 60.000 0.44 0.00 39.91 3.69
611 740 0.772384 AGGGGATCGATACGAGAGGT 59.228 55.000 0.44 0.00 39.91 3.85
612 741 0.882474 GGGGATCGATACGAGAGGTG 59.118 60.000 0.44 0.00 39.91 4.00
613 742 1.606903 GGGATCGATACGAGAGGTGT 58.393 55.000 0.44 0.00 39.91 4.16
614 743 1.955080 GGGATCGATACGAGAGGTGTT 59.045 52.381 0.44 0.00 39.91 3.32
615 744 2.361438 GGGATCGATACGAGAGGTGTTT 59.639 50.000 0.44 0.00 39.91 2.83
616 745 3.372954 GGATCGATACGAGAGGTGTTTG 58.627 50.000 0.00 0.00 39.91 2.93
617 746 3.181489 GGATCGATACGAGAGGTGTTTGT 60.181 47.826 0.00 0.00 39.91 2.83
618 747 3.211803 TCGATACGAGAGGTGTTTGTG 57.788 47.619 0.00 0.00 0.00 3.33
619 748 1.654105 CGATACGAGAGGTGTTTGTGC 59.346 52.381 0.00 0.00 0.00 4.57
620 749 1.654105 GATACGAGAGGTGTTTGTGCG 59.346 52.381 0.00 0.00 0.00 5.34
621 750 0.319211 TACGAGAGGTGTTTGTGCGG 60.319 55.000 0.00 0.00 0.00 5.69
622 751 2.317609 CGAGAGGTGTTTGTGCGGG 61.318 63.158 0.00 0.00 0.00 6.13
623 752 1.227853 GAGAGGTGTTTGTGCGGGT 60.228 57.895 0.00 0.00 0.00 5.28
624 753 0.818040 GAGAGGTGTTTGTGCGGGTT 60.818 55.000 0.00 0.00 0.00 4.11
625 754 0.395173 AGAGGTGTTTGTGCGGGTTT 60.395 50.000 0.00 0.00 0.00 3.27
626 755 0.458260 GAGGTGTTTGTGCGGGTTTT 59.542 50.000 0.00 0.00 0.00 2.43
627 756 0.899019 AGGTGTTTGTGCGGGTTTTT 59.101 45.000 0.00 0.00 0.00 1.94
645 774 2.254918 TTTTTGTGTGTGTGCGTCTG 57.745 45.000 0.00 0.00 0.00 3.51
646 775 0.449786 TTTTGTGTGTGTGCGTCTGG 59.550 50.000 0.00 0.00 0.00 3.86
647 776 0.675208 TTTGTGTGTGTGCGTCTGGT 60.675 50.000 0.00 0.00 0.00 4.00
648 777 1.365368 TTGTGTGTGTGCGTCTGGTG 61.365 55.000 0.00 0.00 0.00 4.17
649 778 2.203001 TGTGTGTGCGTCTGGTGG 60.203 61.111 0.00 0.00 0.00 4.61
650 779 2.972505 GTGTGTGCGTCTGGTGGG 60.973 66.667 0.00 0.00 0.00 4.61
651 780 4.248842 TGTGTGCGTCTGGTGGGG 62.249 66.667 0.00 0.00 0.00 4.96
652 781 4.250305 GTGTGCGTCTGGTGGGGT 62.250 66.667 0.00 0.00 0.00 4.95
653 782 4.248842 TGTGCGTCTGGTGGGGTG 62.249 66.667 0.00 0.00 0.00 4.61
654 783 4.250305 GTGCGTCTGGTGGGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
655 784 4.248842 TGCGTCTGGTGGGGTGTG 62.249 66.667 0.00 0.00 0.00 3.82
657 786 4.329545 CGTCTGGTGGGGTGTGGG 62.330 72.222 0.00 0.00 0.00 4.61
658 787 3.966543 GTCTGGTGGGGTGTGGGG 61.967 72.222 0.00 0.00 0.00 4.96
664 793 4.902258 TGGGGTGTGGGGGACGAA 62.902 66.667 0.00 0.00 0.00 3.85
665 794 3.572222 GGGGTGTGGGGGACGAAA 61.572 66.667 0.00 0.00 0.00 3.46
666 795 2.516909 GGGTGTGGGGGACGAAAA 59.483 61.111 0.00 0.00 0.00 2.29
667 796 1.152715 GGGTGTGGGGGACGAAAAA 60.153 57.895 0.00 0.00 0.00 1.94
701 830 5.637006 AAAATCGAACGAAAATGATGGGA 57.363 34.783 0.12 0.00 0.00 4.37
702 831 4.616181 AATCGAACGAAAATGATGGGAC 57.384 40.909 0.12 0.00 0.00 4.46
703 832 1.996898 TCGAACGAAAATGATGGGACG 59.003 47.619 0.00 0.00 0.00 4.79
704 833 1.996898 CGAACGAAAATGATGGGACGA 59.003 47.619 0.00 0.00 0.00 4.20
705 834 2.413796 CGAACGAAAATGATGGGACGAA 59.586 45.455 0.00 0.00 0.00 3.85
706 835 3.120477 CGAACGAAAATGATGGGACGAAA 60.120 43.478 0.00 0.00 0.00 3.46
707 836 4.611807 CGAACGAAAATGATGGGACGAAAA 60.612 41.667 0.00 0.00 0.00 2.29
708 837 5.385509 AACGAAAATGATGGGACGAAAAT 57.614 34.783 0.00 0.00 0.00 1.82
709 838 6.503589 AACGAAAATGATGGGACGAAAATA 57.496 33.333 0.00 0.00 0.00 1.40
710 839 6.503589 ACGAAAATGATGGGACGAAAATAA 57.496 33.333 0.00 0.00 0.00 1.40
711 840 6.915349 ACGAAAATGATGGGACGAAAATAAA 58.085 32.000 0.00 0.00 0.00 1.40
712 841 7.371936 ACGAAAATGATGGGACGAAAATAAAA 58.628 30.769 0.00 0.00 0.00 1.52
713 842 8.032451 ACGAAAATGATGGGACGAAAATAAAAT 58.968 29.630 0.00 0.00 0.00 1.82
714 843 8.868916 CGAAAATGATGGGACGAAAATAAAATT 58.131 29.630 0.00 0.00 0.00 1.82
727 856 7.100829 GAAAATAAAATTCGAAACGCAACCT 57.899 32.000 0.00 0.00 0.00 3.50
728 857 8.218256 GAAAATAAAATTCGAAACGCAACCTA 57.782 30.769 0.00 0.00 0.00 3.08
729 858 7.557036 AAATAAAATTCGAAACGCAACCTAC 57.443 32.000 0.00 0.00 0.00 3.18
730 859 3.547649 AAATTCGAAACGCAACCTACC 57.452 42.857 0.00 0.00 0.00 3.18
731 860 2.172851 ATTCGAAACGCAACCTACCA 57.827 45.000 0.00 0.00 0.00 3.25
732 861 1.950828 TTCGAAACGCAACCTACCAA 58.049 45.000 0.00 0.00 0.00 3.67
733 862 1.219646 TCGAAACGCAACCTACCAAC 58.780 50.000 0.00 0.00 0.00 3.77
734 863 1.202557 TCGAAACGCAACCTACCAACT 60.203 47.619 0.00 0.00 0.00 3.16
735 864 1.070175 CGAAACGCAACCTACCAACTG 60.070 52.381 0.00 0.00 0.00 3.16
736 865 2.215196 GAAACGCAACCTACCAACTGA 58.785 47.619 0.00 0.00 0.00 3.41
737 866 1.878953 AACGCAACCTACCAACTGAG 58.121 50.000 0.00 0.00 0.00 3.35
738 867 1.045407 ACGCAACCTACCAACTGAGA 58.955 50.000 0.00 0.00 0.00 3.27
739 868 1.270147 ACGCAACCTACCAACTGAGAC 60.270 52.381 0.00 0.00 0.00 3.36
740 869 1.270094 CGCAACCTACCAACTGAGACA 60.270 52.381 0.00 0.00 0.00 3.41
741 870 2.612972 CGCAACCTACCAACTGAGACAT 60.613 50.000 0.00 0.00 0.00 3.06
742 871 3.412386 GCAACCTACCAACTGAGACATT 58.588 45.455 0.00 0.00 0.00 2.71
743 872 4.575885 GCAACCTACCAACTGAGACATTA 58.424 43.478 0.00 0.00 0.00 1.90
744 873 4.631813 GCAACCTACCAACTGAGACATTAG 59.368 45.833 0.00 0.00 0.00 1.73
745 874 5.178797 CAACCTACCAACTGAGACATTAGG 58.821 45.833 0.00 0.00 0.00 2.69
746 875 4.684724 ACCTACCAACTGAGACATTAGGA 58.315 43.478 8.30 0.00 0.00 2.94
747 876 4.712337 ACCTACCAACTGAGACATTAGGAG 59.288 45.833 8.30 0.00 0.00 3.69
748 877 4.712337 CCTACCAACTGAGACATTAGGAGT 59.288 45.833 0.00 0.00 0.00 3.85
749 878 5.187967 CCTACCAACTGAGACATTAGGAGTT 59.812 44.000 0.00 0.00 0.00 3.01
752 881 6.702329 ACCAACTGAGACATTAGGAGTTTAG 58.298 40.000 0.00 0.00 0.00 1.85
780 909 2.510768 AAGACCGACGGAATATCTGC 57.489 50.000 23.38 0.00 0.00 4.26
789 918 2.289694 ACGGAATATCTGCCATAGCACC 60.290 50.000 0.00 0.00 46.52 5.01
820 949 2.551270 GCACAAAGACGACGCAGG 59.449 61.111 0.00 0.00 0.00 4.85
821 950 2.551270 CACAAAGACGACGCAGGC 59.449 61.111 0.00 0.00 0.00 4.85
878 1008 2.582498 GACCCGACGAGCATTCCG 60.582 66.667 0.00 0.00 0.00 4.30
900 1030 2.993264 CCAAGGCAAGGCACCAGG 60.993 66.667 0.00 0.00 0.00 4.45
901 1031 2.993264 CAAGGCAAGGCACCAGGG 60.993 66.667 0.00 0.00 0.00 4.45
977 1113 1.586154 CCACACCAAAGCGGGCTAAG 61.586 60.000 0.00 0.00 40.22 2.18
983 1119 3.442273 CACCAAAGCGGGCTAAGAAAATA 59.558 43.478 0.00 0.00 40.22 1.40
984 1120 3.694566 ACCAAAGCGGGCTAAGAAAATAG 59.305 43.478 0.00 0.00 40.22 1.73
989 1125 5.819825 AGCGGGCTAAGAAAATAGAAAAG 57.180 39.130 0.00 0.00 0.00 2.27
1105 1244 0.937441 TCCTAGATCCAGCCCACTCT 59.063 55.000 0.00 0.00 0.00 3.24
1131 1272 4.402528 CCATCAACGCCCCGTCCA 62.403 66.667 0.00 0.00 39.99 4.02
1151 1292 3.775654 CCCTGTCCTCGCCTCCAC 61.776 72.222 0.00 0.00 0.00 4.02
1153 1294 2.997315 CTGTCCTCGCCTCCACCA 60.997 66.667 0.00 0.00 0.00 4.17
1198 1550 4.803426 CTCCTGCGTCGTGCTCCC 62.803 72.222 0.00 0.00 46.63 4.30
1247 1603 2.285743 GGTCAGGCCCTCCTCCTT 60.286 66.667 0.00 0.00 41.93 3.36
1250 1606 0.912006 GTCAGGCCCTCCTCCTTCTT 60.912 60.000 0.00 0.00 41.93 2.52
1360 1716 1.016130 CGATGCGTGCTCTGTTTCCT 61.016 55.000 0.00 0.00 0.00 3.36
1363 1720 0.670546 TGCGTGCTCTGTTTCCTAGC 60.671 55.000 0.00 0.00 36.77 3.42
1364 1721 0.670546 GCGTGCTCTGTTTCCTAGCA 60.671 55.000 0.00 0.00 43.66 3.49
1403 1760 2.066262 GTTCGATCTCGTTGCTTTCCA 58.934 47.619 0.00 0.00 40.80 3.53
1407 1764 2.092838 CGATCTCGTTGCTTTCCACTTC 59.907 50.000 0.00 0.00 34.11 3.01
1412 1769 1.519408 GTTGCTTTCCACTTCGGCTA 58.481 50.000 0.00 0.00 33.14 3.93
1417 1774 3.244284 TGCTTTCCACTTCGGCTAGTAAA 60.244 43.478 0.00 0.00 33.14 2.01
1418 1775 3.124806 GCTTTCCACTTCGGCTAGTAAAC 59.875 47.826 0.00 0.00 33.14 2.01
1420 1777 4.612264 TTCCACTTCGGCTAGTAAACTT 57.388 40.909 0.00 0.00 33.14 2.66
1421 1778 4.184079 TCCACTTCGGCTAGTAAACTTC 57.816 45.455 0.00 0.00 33.14 3.01
1422 1779 2.921754 CCACTTCGGCTAGTAAACTTCG 59.078 50.000 0.00 0.00 0.00 3.79
1423 1780 3.366679 CCACTTCGGCTAGTAAACTTCGA 60.367 47.826 0.00 0.00 0.00 3.71
1436 1794 3.572604 AACTTCGAGTAGCGCTTAGTT 57.427 42.857 18.68 12.81 40.61 2.24
1438 1796 3.500014 ACTTCGAGTAGCGCTTAGTTTC 58.500 45.455 18.68 5.74 40.61 2.78
1452 1817 1.247567 AGTTTCTGTGCATTTCCGGG 58.752 50.000 0.00 0.00 0.00 5.73
1510 1886 1.929169 GTGGGCCGTACGTTAGATTTC 59.071 52.381 15.21 0.00 0.00 2.17
1519 1895 4.205792 CGTACGTTAGATTTCGTTCCATCC 59.794 45.833 7.22 0.00 40.70 3.51
1559 1935 3.181493 GCTGCTTTCAGGGTTCATGTATG 60.181 47.826 0.00 0.00 40.65 2.39
1563 1939 2.715749 TCAGGGTTCATGTATGGCAG 57.284 50.000 0.00 0.00 0.00 4.85
1573 1949 0.981183 TGTATGGCAGGGACGAAACT 59.019 50.000 0.00 0.00 0.00 2.66
1586 1962 0.036765 CGAAACTGGGATGGACGGAA 60.037 55.000 0.00 0.00 0.00 4.30
1612 1988 0.586319 GCACAGTTGCGCTTTGTAGA 59.414 50.000 9.73 0.00 39.50 2.59
1615 1991 3.057019 CACAGTTGCGCTTTGTAGACTA 58.943 45.455 9.73 0.00 0.00 2.59
1616 1992 3.057734 ACAGTTGCGCTTTGTAGACTAC 58.942 45.455 9.73 5.62 0.00 2.73
1617 1993 3.057019 CAGTTGCGCTTTGTAGACTACA 58.943 45.455 11.37 11.37 36.79 2.74
1618 1994 3.493129 CAGTTGCGCTTTGTAGACTACAA 59.507 43.478 21.54 21.54 46.13 2.41
1804 2182 2.347731 TGTGCGTTTGTCACTTGTACA 58.652 42.857 0.00 0.00 35.58 2.90
1834 2228 4.592426 GGCCACCGAGTAGTGAAC 57.408 61.111 0.00 0.00 40.34 3.18
1835 2229 1.972978 GGCCACCGAGTAGTGAACT 59.027 57.895 0.00 0.00 42.80 3.01
1836 2230 0.389948 GGCCACCGAGTAGTGAACTG 60.390 60.000 0.00 0.00 39.07 3.16
1837 2231 0.389948 GCCACCGAGTAGTGAACTGG 60.390 60.000 0.00 0.00 39.07 4.00
1838 2232 0.966920 CCACCGAGTAGTGAACTGGT 59.033 55.000 0.00 0.00 39.07 4.00
1839 2233 1.343465 CCACCGAGTAGTGAACTGGTT 59.657 52.381 0.00 0.00 39.07 3.67
1840 2234 2.224209 CCACCGAGTAGTGAACTGGTTT 60.224 50.000 0.00 0.00 39.07 3.27
1845 2239 3.304525 CGAGTAGTGAACTGGTTTCGAGT 60.305 47.826 0.00 0.00 39.07 4.18
1847 2241 5.373981 AGTAGTGAACTGGTTTCGAGTAG 57.626 43.478 0.00 0.00 36.93 2.57
1880 2274 2.114411 GCTGGTTTCAACGGGGGA 59.886 61.111 0.00 0.00 0.00 4.81
1885 2279 1.297364 GTTTCAACGGGGGATCGGA 59.703 57.895 0.00 0.00 0.00 4.55
1950 2348 3.070302 GCTTGATACTTCCTGGTAGGGAG 59.930 52.174 5.28 1.51 46.99 4.30
2014 2416 5.126222 GGCTTTTGGAGAAATTAGGAAGGAG 59.874 44.000 0.00 0.00 0.00 3.69
2046 2448 1.670811 GAGACTGAGAAGCCGAGAGAG 59.329 57.143 0.00 0.00 0.00 3.20
2059 2461 3.429547 GCCGAGAGAGAAGAAAGCACATA 60.430 47.826 0.00 0.00 0.00 2.29
2310 2714 7.346751 TCCCTGGAATTTCTGTTTATTATGC 57.653 36.000 0.00 0.00 0.00 3.14
2426 2831 9.247861 AGCTATTATATGCCCCTTTAATTTCTG 57.752 33.333 0.00 0.00 0.00 3.02
2443 2848 2.507484 TCTGGATGGTTGTTGCTTGAG 58.493 47.619 0.00 0.00 0.00 3.02
2457 2862 1.286257 GCTTGAGGAAAGGGGGAAGAT 59.714 52.381 0.00 0.00 36.30 2.40
2512 2917 4.393062 GCATATGAGTTATATTGCTGCCGT 59.607 41.667 6.97 0.00 29.37 5.68
2657 3086 5.919348 ATGGGTGAACATTCTAGATCCAT 57.081 39.130 0.00 0.00 0.00 3.41
2666 3095 5.555017 ACATTCTAGATCCATATGTGGTGC 58.445 41.667 8.51 2.09 46.16 5.01
2714 3143 7.276658 ACATTTCTATCTTCTGCTAAGTTGTCG 59.723 37.037 0.00 0.00 0.00 4.35
2716 3145 6.510879 TCTATCTTCTGCTAAGTTGTCGAA 57.489 37.500 0.00 0.00 0.00 3.71
2726 3155 1.228154 GTTGTCGAACCCTTGGGCT 60.228 57.895 5.46 0.00 0.00 5.19
2767 3196 6.012658 TGTATGCTGTTCACCAGATTTTTC 57.987 37.500 0.00 0.00 44.49 2.29
2768 3197 5.534278 TGTATGCTGTTCACCAGATTTTTCA 59.466 36.000 0.00 0.00 44.49 2.69
2836 3265 3.067833 GCTAGTTTCTGAGGTTGGACAC 58.932 50.000 0.00 0.00 0.00 3.67
2846 3275 1.170290 GGTTGGACACCCGTTTCTGG 61.170 60.000 0.00 0.00 40.19 3.86
2927 3375 2.684001 TGACCGTTTTCTGTGTCACT 57.316 45.000 4.27 0.00 33.09 3.41
2945 3393 2.797156 CACTACGTGCATATTCAGGAGC 59.203 50.000 0.00 0.00 0.00 4.70
2955 3403 6.016860 GTGCATATTCAGGAGCATGTATTTCA 60.017 38.462 0.00 0.00 39.43 2.69
3005 3454 7.413877 GCTTCATTTTCAGTATGGAAGTCTCAG 60.414 40.741 0.00 0.00 33.25 3.35
3025 3474 1.021390 CAGTTGCTGAGGTTAGGCCG 61.021 60.000 0.00 0.00 43.70 6.13
3526 3975 2.393271 GACCAGACATGTCCTTCCTG 57.607 55.000 22.21 13.01 0.00 3.86
3527 3976 0.326264 ACCAGACATGTCCTTCCTGC 59.674 55.000 22.21 0.00 0.00 4.85
3528 3977 0.325933 CCAGACATGTCCTTCCTGCA 59.674 55.000 22.21 0.00 0.00 4.41
3529 3978 1.064906 CCAGACATGTCCTTCCTGCAT 60.065 52.381 22.21 0.00 0.00 3.96
3530 3979 2.171237 CCAGACATGTCCTTCCTGCATA 59.829 50.000 22.21 0.00 0.00 3.14
3531 3980 3.201290 CAGACATGTCCTTCCTGCATAC 58.799 50.000 22.21 0.00 0.00 2.39
3532 3981 3.110705 AGACATGTCCTTCCTGCATACT 58.889 45.455 22.21 0.00 0.00 2.12
3533 3982 4.100035 CAGACATGTCCTTCCTGCATACTA 59.900 45.833 22.21 0.00 0.00 1.82
3534 3983 4.343526 AGACATGTCCTTCCTGCATACTAG 59.656 45.833 22.21 0.00 0.00 2.57
3535 3984 3.389329 ACATGTCCTTCCTGCATACTAGG 59.611 47.826 0.00 0.00 36.63 3.02
3536 3985 3.398318 TGTCCTTCCTGCATACTAGGA 57.602 47.619 0.00 0.00 42.43 2.94
3537 3986 3.737032 GTCCTTCCTGCATACTAGGAC 57.263 52.381 16.68 16.68 43.75 3.85
3538 3987 2.365941 GTCCTTCCTGCATACTAGGACC 59.634 54.545 19.15 7.90 45.84 4.46
3539 3988 2.023404 TCCTTCCTGCATACTAGGACCA 60.023 50.000 0.00 0.00 43.75 4.02
3540 3989 2.366916 CCTTCCTGCATACTAGGACCAG 59.633 54.545 0.00 0.00 43.75 4.00
3541 3990 3.300388 CTTCCTGCATACTAGGACCAGA 58.700 50.000 6.12 0.00 43.75 3.86
3542 3991 2.667470 TCCTGCATACTAGGACCAGAC 58.333 52.381 6.12 0.00 39.36 3.51
3543 3992 2.024369 TCCTGCATACTAGGACCAGACA 60.024 50.000 6.12 0.00 39.36 3.41
3544 3993 2.968574 CCTGCATACTAGGACCAGACAT 59.031 50.000 6.12 0.00 37.52 3.06
3545 3994 4.141018 TCCTGCATACTAGGACCAGACATA 60.141 45.833 6.12 0.00 39.36 2.29
3546 3995 4.774726 CCTGCATACTAGGACCAGACATAT 59.225 45.833 6.12 0.00 37.52 1.78
3547 3996 5.105554 CCTGCATACTAGGACCAGACATATC 60.106 48.000 6.12 0.00 37.52 1.63
3548 3997 4.772624 TGCATACTAGGACCAGACATATCC 59.227 45.833 0.00 0.00 0.00 2.59
3549 3998 5.020132 GCATACTAGGACCAGACATATCCT 58.980 45.833 0.00 0.00 45.12 3.24
3550 3999 5.482175 GCATACTAGGACCAGACATATCCTT 59.518 44.000 0.00 0.00 40.03 3.36
3551 4000 6.350612 GCATACTAGGACCAGACATATCCTTC 60.351 46.154 0.00 0.00 40.03 3.46
3552 4001 4.484912 ACTAGGACCAGACATATCCTTCC 58.515 47.826 0.00 0.00 40.03 3.46
3553 4002 3.715648 AGGACCAGACATATCCTTCCT 57.284 47.619 0.00 0.00 40.03 3.36
3617 4066 9.865321 TTATAACTGTAAACTGCTAGAAACGAT 57.135 29.630 0.00 0.00 0.00 3.73
3626 4075 6.276832 ACTGCTAGAAACGATAAACTACCA 57.723 37.500 0.00 0.00 0.00 3.25
3753 4203 7.811117 ATCTCACTGTTAGTGTAGGAGATAC 57.189 40.000 8.64 0.00 46.03 2.24
3774 4224 3.255888 ACGATGAGCTACTTGTCAGTTGA 59.744 43.478 0.00 0.00 34.06 3.18
3806 4257 4.082787 ACGGTGATCTGGTGCTTTATTTTG 60.083 41.667 0.00 0.00 0.00 2.44
4036 4488 8.192774 CCAATGTGATAATTTTGCATCAGTACT 58.807 33.333 0.00 0.00 31.99 2.73
4098 4550 1.696336 AGAAGTGGAGCATGTGTCTGT 59.304 47.619 0.00 0.00 0.00 3.41
4124 4576 6.372659 CAGGTGTTATGCTACTTTTGAGTGAT 59.627 38.462 0.00 0.00 0.00 3.06
4218 4684 2.922740 AACTCGTTGCCTGACCTTTA 57.077 45.000 0.00 0.00 0.00 1.85
4225 4691 4.580995 TCGTTGCCTGACCTTTATTTTTCA 59.419 37.500 0.00 0.00 0.00 2.69
4231 4697 9.651913 TTGCCTGACCTTTATTTTTCATTTATC 57.348 29.630 0.00 0.00 0.00 1.75
4322 4788 3.552699 TCAAAACGTTACTCAAGGTCACG 59.447 43.478 0.00 0.00 46.92 4.35
4351 4817 1.675720 GGTGTGGCTGTTTGGCTTGT 61.676 55.000 0.00 0.00 42.34 3.16
4467 4933 4.565861 GCAGGAAAGAAAGGCTAGGTACTT 60.566 45.833 0.00 0.00 41.75 2.24
4478 4944 3.557264 GGCTAGGTACTTATGGTGATGGC 60.557 52.174 0.00 0.00 41.75 4.40
4487 4953 2.234896 ATGGTGATGGCAATGTGGAA 57.765 45.000 0.00 0.00 0.00 3.53
4493 4959 0.247185 ATGGCAATGTGGAAAAGGCG 59.753 50.000 0.00 0.00 0.00 5.52
4495 4961 0.388520 GGCAATGTGGAAAAGGCGAC 60.389 55.000 0.00 0.00 0.00 5.19
4505 4971 1.531578 GAAAAGGCGACAGAGACAACC 59.468 52.381 0.00 0.00 0.00 3.77
4556 5022 4.698575 AGAGTGGAGAAAGTGTCTTTGAC 58.301 43.478 0.00 0.00 36.41 3.18
4589 5055 4.659368 ACTGACTCCCATGATGATGATTCT 59.341 41.667 0.00 0.00 0.00 2.40
4600 5066 4.945543 TGATGATGATTCTGGAAACACAGG 59.054 41.667 0.00 0.00 38.98 4.00
4627 5093 1.423161 AGAAGCTGAAGAAGGGCAAGT 59.577 47.619 0.00 0.00 0.00 3.16
4832 5298 0.964700 AGCAAGCTGAGAAAAAGGGC 59.035 50.000 0.00 0.00 0.00 5.19
5056 5522 1.541588 GTCTGAACATGAAGGGGCAAC 59.458 52.381 0.00 0.00 0.00 4.17
5255 5721 1.300931 AGCAGAAGTTCGCGCTGAA 60.301 52.632 18.49 8.28 30.64 3.02
5289 5755 1.671328 CGCAGACAGAGAACTCCGATA 59.329 52.381 0.00 0.00 0.00 2.92
5298 5764 3.747388 AGAGAACTCCGATAGAGCCTCTG 60.747 52.174 3.98 0.00 46.14 3.35
5621 6087 4.574013 AGCTACTGCACATAGAAAGATTGC 59.426 41.667 4.70 0.00 42.74 3.56
5637 6103 8.632679 AGAAAGATTGCTTGTTTGTTCAGATTA 58.367 29.630 0.00 0.00 33.79 1.75
5666 6132 9.946165 GTTACATCCTTTAGTTGGTAATATTGC 57.054 33.333 0.00 0.00 0.00 3.56
5667 6133 9.914834 TTACATCCTTTAGTTGGTAATATTGCT 57.085 29.630 3.46 0.00 0.00 3.91
5668 6134 8.225603 ACATCCTTTAGTTGGTAATATTGCTG 57.774 34.615 3.46 0.00 0.00 4.41
5669 6135 7.285401 ACATCCTTTAGTTGGTAATATTGCTGG 59.715 37.037 3.46 0.00 0.00 4.85
5670 6136 6.727394 TCCTTTAGTTGGTAATATTGCTGGT 58.273 36.000 3.46 0.00 0.00 4.00
5671 6137 6.601613 TCCTTTAGTTGGTAATATTGCTGGTG 59.398 38.462 3.46 0.00 0.00 4.17
5672 6138 5.828299 TTAGTTGGTAATATTGCTGGTGC 57.172 39.130 3.46 0.00 40.20 5.01
5753 6232 2.489971 TCTTGCCAAGTTGTTACCTCG 58.510 47.619 4.04 0.00 0.00 4.63
5757 6236 1.798813 GCCAAGTTGTTACCTCGACAG 59.201 52.381 1.45 0.00 0.00 3.51
5783 6262 3.230134 ACTTTGGCTGCTATGTTCCAAA 58.770 40.909 0.00 5.35 43.80 3.28
5784 6263 3.834231 ACTTTGGCTGCTATGTTCCAAAT 59.166 39.130 0.00 0.00 44.59 2.32
5809 6288 1.719780 CAAGGTACTCTGTTCGTTCGC 59.280 52.381 0.00 0.00 38.49 4.70
5900 6379 4.094442 GGTTACAGCTACTATGTTTGGTGC 59.906 45.833 0.00 0.00 32.02 5.01
6042 6528 6.506464 TTTCTCTTCTTTTTACGAGTGTCG 57.494 37.500 0.00 0.00 46.93 4.35
6054 6540 0.038159 GAGTGTCGCTACTGCCTTGT 60.038 55.000 0.00 0.00 35.36 3.16
6079 6565 4.699637 TCTTTGTTCCTTAGTCGCTTGAA 58.300 39.130 0.00 0.00 0.00 2.69
6112 6598 1.212688 TGGATTGGGCTGGACATACAG 59.787 52.381 0.00 0.00 41.41 2.74
6120 6606 3.493350 GGGCTGGACATACAGTGATACAG 60.493 52.174 0.00 0.00 40.59 2.74
6141 6627 4.211794 CAGACCATTTGTTGCCAAACATTC 59.788 41.667 0.00 0.00 45.54 2.67
6146 6632 5.933463 CCATTTGTTGCCAAACATTCACTAT 59.067 36.000 0.00 0.00 45.54 2.12
6151 6637 5.181811 TGTTGCCAAACATTCACTATCTCTG 59.818 40.000 0.00 0.00 41.41 3.35
6201 6687 8.457261 ACAAATCAATTTAAACTGCAAAAGCAA 58.543 25.926 0.00 0.00 0.00 3.91
6256 6742 3.310727 CATCTGGGCGATGCATACA 57.689 52.632 0.00 0.00 42.75 2.29
6302 6801 0.676782 AAAGCCGCCGTCTAAGCAAT 60.677 50.000 0.00 0.00 0.00 3.56
6326 6825 0.744874 TGTCGCTACACCTATCCAGC 59.255 55.000 0.00 0.00 0.00 4.85
6368 6868 3.688414 GCCTGGGCTAATACCAAACAGAT 60.688 47.826 4.12 0.00 37.59 2.90
6382 6882 2.698855 ACAGATATCGCAGCCAAACT 57.301 45.000 0.00 0.00 0.00 2.66
6526 7026 2.420129 GCATCAACCTTGGTCGGTCTAT 60.420 50.000 0.00 0.00 35.89 1.98
6811 7311 2.338015 CCAGCGCTGCTCCACAAAT 61.338 57.895 31.96 0.00 36.40 2.32
6870 7370 1.548719 TCGTCCGATCTGAAACACCAT 59.451 47.619 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.100084 CCAGGGGACGATGCTGCA 62.100 66.667 4.13 4.13 0.00 4.41
22 23 4.316823 AGGAGCACCAGGGGACGA 62.317 66.667 2.07 0.00 38.94 4.20
88 89 0.248825 GCAGATCTCGTCGATGCTGT 60.249 55.000 10.53 0.00 33.53 4.40
110 111 3.827008 TGATCTTGGCTAGCGAGAATT 57.173 42.857 19.39 7.73 0.00 2.17
171 215 1.152271 TGGAAGAGGGGAGGAAGAAGT 59.848 52.381 0.00 0.00 0.00 3.01
172 216 1.958288 TGGAAGAGGGGAGGAAGAAG 58.042 55.000 0.00 0.00 0.00 2.85
173 217 2.200081 CATGGAAGAGGGGAGGAAGAA 58.800 52.381 0.00 0.00 0.00 2.52
174 218 1.626350 CCATGGAAGAGGGGAGGAAGA 60.626 57.143 5.56 0.00 0.00 2.87
175 219 0.842635 CCATGGAAGAGGGGAGGAAG 59.157 60.000 5.56 0.00 0.00 3.46
176 220 0.121197 ACCATGGAAGAGGGGAGGAA 59.879 55.000 21.47 0.00 0.00 3.36
195 303 0.888736 CATCACGTCCCTTGTGCCAA 60.889 55.000 0.00 0.00 37.26 4.52
210 318 1.330655 GCCTCCCGTTCCTCTCATCA 61.331 60.000 0.00 0.00 0.00 3.07
337 455 1.142748 CTGCTCTAGGGTTCGCCAG 59.857 63.158 0.00 0.00 39.65 4.85
338 456 2.359169 CCTGCTCTAGGGTTCGCCA 61.359 63.158 0.00 0.00 43.33 5.69
416 534 4.689549 TCCTCTCGGGGTTCGCCA 62.690 66.667 6.71 0.00 39.65 5.69
456 581 1.308326 CTCCCTCTCCCTCGGTCTT 59.692 63.158 0.00 0.00 0.00 3.01
530 659 4.722700 CCCCGTGCTCCCTGTTGG 62.723 72.222 0.00 0.00 0.00 3.77
531 660 4.722700 CCCCCGTGCTCCCTGTTG 62.723 72.222 0.00 0.00 0.00 3.33
555 684 4.891727 CCATCTCCCGTTCCGCCG 62.892 72.222 0.00 0.00 0.00 6.46
556 685 4.547367 CCCATCTCCCGTTCCGCC 62.547 72.222 0.00 0.00 0.00 6.13
557 686 4.547367 CCCCATCTCCCGTTCCGC 62.547 72.222 0.00 0.00 0.00 5.54
558 687 3.861797 CCCCCATCTCCCGTTCCG 61.862 72.222 0.00 0.00 0.00 4.30
559 688 4.191015 GCCCCCATCTCCCGTTCC 62.191 72.222 0.00 0.00 0.00 3.62
560 689 4.547367 CGCCCCCATCTCCCGTTC 62.547 72.222 0.00 0.00 0.00 3.95
574 703 4.856607 CGAGGAGAAGCCGTCGCC 62.857 72.222 0.01 0.01 46.19 5.54
575 704 3.743091 CTCGAGGAGAAGCCGTCGC 62.743 68.421 3.91 0.00 43.43 5.19
576 705 2.405594 CTCGAGGAGAAGCCGTCG 59.594 66.667 3.91 0.00 43.43 5.12
577 706 2.776913 CCCTCGAGGAGAAGCCGTC 61.777 68.421 33.39 0.00 43.43 4.79
578 707 2.756283 CCCTCGAGGAGAAGCCGT 60.756 66.667 33.39 0.00 43.43 5.68
579 708 3.532155 CCCCTCGAGGAGAAGCCG 61.532 72.222 33.39 13.68 43.43 5.52
580 709 1.458588 ATCCCCTCGAGGAGAAGCC 60.459 63.158 33.39 0.00 39.95 4.35
581 710 2.046108 GATCCCCTCGAGGAGAAGC 58.954 63.158 33.39 17.29 39.95 3.86
591 720 1.271488 ACCTCTCGTATCGATCCCCTC 60.271 57.143 0.00 0.00 34.61 4.30
592 721 0.772384 ACCTCTCGTATCGATCCCCT 59.228 55.000 0.00 0.00 34.61 4.79
593 722 0.882474 CACCTCTCGTATCGATCCCC 59.118 60.000 0.00 0.00 34.61 4.81
594 723 1.606903 ACACCTCTCGTATCGATCCC 58.393 55.000 0.00 0.00 34.61 3.85
595 724 3.181489 ACAAACACCTCTCGTATCGATCC 60.181 47.826 0.00 0.00 34.61 3.36
596 725 3.791887 CACAAACACCTCTCGTATCGATC 59.208 47.826 0.00 0.00 34.61 3.69
597 726 3.770666 CACAAACACCTCTCGTATCGAT 58.229 45.455 2.16 2.16 34.61 3.59
598 727 2.670229 GCACAAACACCTCTCGTATCGA 60.670 50.000 0.00 0.00 0.00 3.59
599 728 1.654105 GCACAAACACCTCTCGTATCG 59.346 52.381 0.00 0.00 0.00 2.92
600 729 1.654105 CGCACAAACACCTCTCGTATC 59.346 52.381 0.00 0.00 0.00 2.24
601 730 1.671850 CCGCACAAACACCTCTCGTAT 60.672 52.381 0.00 0.00 0.00 3.06
602 731 0.319211 CCGCACAAACACCTCTCGTA 60.319 55.000 0.00 0.00 0.00 3.43
603 732 1.594293 CCGCACAAACACCTCTCGT 60.594 57.895 0.00 0.00 0.00 4.18
604 733 2.317609 CCCGCACAAACACCTCTCG 61.318 63.158 0.00 0.00 0.00 4.04
605 734 0.818040 AACCCGCACAAACACCTCTC 60.818 55.000 0.00 0.00 0.00 3.20
606 735 0.395173 AAACCCGCACAAACACCTCT 60.395 50.000 0.00 0.00 0.00 3.69
607 736 0.458260 AAAACCCGCACAAACACCTC 59.542 50.000 0.00 0.00 0.00 3.85
608 737 0.899019 AAAAACCCGCACAAACACCT 59.101 45.000 0.00 0.00 0.00 4.00
609 738 3.444751 AAAAACCCGCACAAACACC 57.555 47.368 0.00 0.00 0.00 4.16
626 755 1.135546 CCAGACGCACACACACAAAAA 60.136 47.619 0.00 0.00 0.00 1.94
627 756 0.449786 CCAGACGCACACACACAAAA 59.550 50.000 0.00 0.00 0.00 2.44
628 757 0.675208 ACCAGACGCACACACACAAA 60.675 50.000 0.00 0.00 0.00 2.83
629 758 1.078778 ACCAGACGCACACACACAA 60.079 52.632 0.00 0.00 0.00 3.33
630 759 1.813337 CACCAGACGCACACACACA 60.813 57.895 0.00 0.00 0.00 3.72
631 760 2.534019 CCACCAGACGCACACACAC 61.534 63.158 0.00 0.00 0.00 3.82
632 761 2.203001 CCACCAGACGCACACACA 60.203 61.111 0.00 0.00 0.00 3.72
633 762 2.972505 CCCACCAGACGCACACAC 60.973 66.667 0.00 0.00 0.00 3.82
634 763 4.248842 CCCCACCAGACGCACACA 62.249 66.667 0.00 0.00 0.00 3.72
635 764 4.250305 ACCCCACCAGACGCACAC 62.250 66.667 0.00 0.00 0.00 3.82
636 765 4.248842 CACCCCACCAGACGCACA 62.249 66.667 0.00 0.00 0.00 4.57
637 766 4.250305 ACACCCCACCAGACGCAC 62.250 66.667 0.00 0.00 0.00 5.34
638 767 4.248842 CACACCCCACCAGACGCA 62.249 66.667 0.00 0.00 0.00 5.24
640 769 4.329545 CCCACACCCCACCAGACG 62.330 72.222 0.00 0.00 0.00 4.18
641 770 3.966543 CCCCACACCCCACCAGAC 61.967 72.222 0.00 0.00 0.00 3.51
647 776 4.902258 TTCGTCCCCCACACCCCA 62.902 66.667 0.00 0.00 0.00 4.96
648 777 2.643788 TTTTTCGTCCCCCACACCCC 62.644 60.000 0.00 0.00 0.00 4.95
649 778 1.152715 TTTTTCGTCCCCCACACCC 60.153 57.895 0.00 0.00 0.00 4.61
650 779 4.583086 TTTTTCGTCCCCCACACC 57.417 55.556 0.00 0.00 0.00 4.16
678 807 5.861787 GTCCCATCATTTTCGTTCGATTTTT 59.138 36.000 0.00 0.00 0.00 1.94
679 808 5.399013 GTCCCATCATTTTCGTTCGATTTT 58.601 37.500 0.00 0.00 0.00 1.82
680 809 4.436852 CGTCCCATCATTTTCGTTCGATTT 60.437 41.667 0.00 0.00 0.00 2.17
681 810 3.063452 CGTCCCATCATTTTCGTTCGATT 59.937 43.478 0.00 0.00 0.00 3.34
682 811 2.607635 CGTCCCATCATTTTCGTTCGAT 59.392 45.455 0.00 0.00 0.00 3.59
683 812 1.996898 CGTCCCATCATTTTCGTTCGA 59.003 47.619 0.00 0.00 0.00 3.71
684 813 1.996898 TCGTCCCATCATTTTCGTTCG 59.003 47.619 0.00 0.00 0.00 3.95
685 814 4.413495 TTTCGTCCCATCATTTTCGTTC 57.587 40.909 0.00 0.00 0.00 3.95
686 815 4.839668 TTTTCGTCCCATCATTTTCGTT 57.160 36.364 0.00 0.00 0.00 3.85
687 816 6.503589 TTATTTTCGTCCCATCATTTTCGT 57.496 33.333 0.00 0.00 0.00 3.85
688 817 7.804614 TTTTATTTTCGTCCCATCATTTTCG 57.195 32.000 0.00 0.00 0.00 3.46
690 819 8.868916 CGAATTTTATTTTCGTCCCATCATTTT 58.131 29.630 0.00 0.00 40.71 1.82
691 820 8.247562 TCGAATTTTATTTTCGTCCCATCATTT 58.752 29.630 5.82 0.00 44.69 2.32
692 821 7.767261 TCGAATTTTATTTTCGTCCCATCATT 58.233 30.769 5.82 0.00 44.69 2.57
693 822 7.328277 TCGAATTTTATTTTCGTCCCATCAT 57.672 32.000 5.82 0.00 44.69 2.45
694 823 6.745159 TCGAATTTTATTTTCGTCCCATCA 57.255 33.333 5.82 0.00 44.69 3.07
695 824 7.253190 CGTTTCGAATTTTATTTTCGTCCCATC 60.253 37.037 0.00 0.00 44.69 3.51
696 825 6.525280 CGTTTCGAATTTTATTTTCGTCCCAT 59.475 34.615 0.00 0.00 44.69 4.00
697 826 5.852229 CGTTTCGAATTTTATTTTCGTCCCA 59.148 36.000 0.00 0.00 44.69 4.37
698 827 5.219896 GCGTTTCGAATTTTATTTTCGTCCC 60.220 40.000 0.00 0.00 44.69 4.46
699 828 5.340138 TGCGTTTCGAATTTTATTTTCGTCC 59.660 36.000 0.00 0.00 44.69 4.79
700 829 6.351993 TGCGTTTCGAATTTTATTTTCGTC 57.648 33.333 0.00 0.00 44.69 4.20
701 830 6.345172 GGTTGCGTTTCGAATTTTATTTTCGT 60.345 34.615 0.00 0.00 44.69 3.85
702 831 5.998772 GGTTGCGTTTCGAATTTTATTTTCG 59.001 36.000 0.00 0.00 45.51 3.46
703 832 7.100829 AGGTTGCGTTTCGAATTTTATTTTC 57.899 32.000 0.00 0.00 0.00 2.29
704 833 7.115236 GGTAGGTTGCGTTTCGAATTTTATTTT 59.885 33.333 0.00 0.00 0.00 1.82
705 834 6.583427 GGTAGGTTGCGTTTCGAATTTTATTT 59.417 34.615 0.00 0.00 0.00 1.40
706 835 6.088173 GGTAGGTTGCGTTTCGAATTTTATT 58.912 36.000 0.00 0.00 0.00 1.40
707 836 5.181622 TGGTAGGTTGCGTTTCGAATTTTAT 59.818 36.000 0.00 0.00 0.00 1.40
708 837 4.514441 TGGTAGGTTGCGTTTCGAATTTTA 59.486 37.500 0.00 0.00 0.00 1.52
709 838 3.315749 TGGTAGGTTGCGTTTCGAATTTT 59.684 39.130 0.00 0.00 0.00 1.82
710 839 2.879646 TGGTAGGTTGCGTTTCGAATTT 59.120 40.909 0.00 0.00 0.00 1.82
711 840 2.496111 TGGTAGGTTGCGTTTCGAATT 58.504 42.857 0.00 0.00 0.00 2.17
712 841 2.172851 TGGTAGGTTGCGTTTCGAAT 57.827 45.000 0.00 0.00 0.00 3.34
713 842 1.598601 GTTGGTAGGTTGCGTTTCGAA 59.401 47.619 0.00 0.00 0.00 3.71
714 843 1.202557 AGTTGGTAGGTTGCGTTTCGA 60.203 47.619 0.00 0.00 0.00 3.71
715 844 1.070175 CAGTTGGTAGGTTGCGTTTCG 60.070 52.381 0.00 0.00 0.00 3.46
716 845 2.215196 TCAGTTGGTAGGTTGCGTTTC 58.785 47.619 0.00 0.00 0.00 2.78
717 846 2.158871 TCTCAGTTGGTAGGTTGCGTTT 60.159 45.455 0.00 0.00 0.00 3.60
718 847 1.414919 TCTCAGTTGGTAGGTTGCGTT 59.585 47.619 0.00 0.00 0.00 4.84
719 848 1.045407 TCTCAGTTGGTAGGTTGCGT 58.955 50.000 0.00 0.00 0.00 5.24
720 849 1.270094 TGTCTCAGTTGGTAGGTTGCG 60.270 52.381 0.00 0.00 0.00 4.85
721 850 2.543777 TGTCTCAGTTGGTAGGTTGC 57.456 50.000 0.00 0.00 0.00 4.17
722 851 5.046591 TCCTAATGTCTCAGTTGGTAGGTTG 60.047 44.000 0.00 0.00 0.00 3.77
723 852 5.091552 TCCTAATGTCTCAGTTGGTAGGTT 58.908 41.667 0.00 0.00 0.00 3.50
724 853 4.684724 TCCTAATGTCTCAGTTGGTAGGT 58.315 43.478 0.00 0.00 0.00 3.08
725 854 4.712337 ACTCCTAATGTCTCAGTTGGTAGG 59.288 45.833 0.00 0.00 0.00 3.18
726 855 5.923733 ACTCCTAATGTCTCAGTTGGTAG 57.076 43.478 0.00 0.00 0.00 3.18
727 856 6.681729 AAACTCCTAATGTCTCAGTTGGTA 57.318 37.500 0.00 0.00 0.00 3.25
728 857 5.568620 AAACTCCTAATGTCTCAGTTGGT 57.431 39.130 0.00 0.00 0.00 3.67
729 858 6.936279 TCTAAACTCCTAATGTCTCAGTTGG 58.064 40.000 0.00 0.00 0.00 3.77
741 870 9.595823 CGGTCTTTCATTAATCTAAACTCCTAA 57.404 33.333 0.00 0.00 0.00 2.69
742 871 8.974238 TCGGTCTTTCATTAATCTAAACTCCTA 58.026 33.333 0.00 0.00 0.00 2.94
743 872 7.764901 GTCGGTCTTTCATTAATCTAAACTCCT 59.235 37.037 0.00 0.00 0.00 3.69
744 873 7.254017 CGTCGGTCTTTCATTAATCTAAACTCC 60.254 40.741 0.00 0.00 0.00 3.85
745 874 7.254017 CCGTCGGTCTTTCATTAATCTAAACTC 60.254 40.741 2.08 0.00 0.00 3.01
746 875 6.534079 CCGTCGGTCTTTCATTAATCTAAACT 59.466 38.462 2.08 0.00 0.00 2.66
747 876 6.532657 TCCGTCGGTCTTTCATTAATCTAAAC 59.467 38.462 11.88 0.00 0.00 2.01
748 877 6.632909 TCCGTCGGTCTTTCATTAATCTAAA 58.367 36.000 11.88 0.00 0.00 1.85
749 878 6.211587 TCCGTCGGTCTTTCATTAATCTAA 57.788 37.500 11.88 0.00 0.00 2.10
752 881 5.986004 ATTCCGTCGGTCTTTCATTAATC 57.014 39.130 11.88 0.00 0.00 1.75
780 909 2.867091 GCGCGTTACGGTGCTATGG 61.867 63.158 8.43 0.00 43.93 2.74
891 1021 3.846405 TTCCTCGTCCCTGGTGCCT 62.846 63.158 0.00 0.00 0.00 4.75
892 1022 3.319198 TTCCTCGTCCCTGGTGCC 61.319 66.667 0.00 0.00 0.00 5.01
893 1023 2.047179 GTTCCTCGTCCCTGGTGC 60.047 66.667 0.00 0.00 0.00 5.01
894 1024 2.663196 GGTTCCTCGTCCCTGGTG 59.337 66.667 0.00 0.00 0.00 4.17
895 1025 2.606826 GGGTTCCTCGTCCCTGGT 60.607 66.667 0.00 0.00 40.48 4.00
896 1026 3.771160 CGGGTTCCTCGTCCCTGG 61.771 72.222 0.00 0.00 41.40 4.45
897 1027 2.995574 ACGGGTTCCTCGTCCCTG 60.996 66.667 0.00 0.00 41.40 4.45
983 1119 7.330946 CACCTTTTCCTTTTCGTTTTCTTTTCT 59.669 33.333 0.00 0.00 0.00 2.52
984 1120 7.329962 TCACCTTTTCCTTTTCGTTTTCTTTTC 59.670 33.333 0.00 0.00 0.00 2.29
989 1125 6.954616 TTTCACCTTTTCCTTTTCGTTTTC 57.045 33.333 0.00 0.00 0.00 2.29
1001 1137 3.191669 CGGGTTTGGTTTTCACCTTTTC 58.808 45.455 0.00 0.00 44.61 2.29
1039 1175 4.530857 CGTGATCGTGGGAGGCCC 62.531 72.222 0.00 0.00 45.71 5.80
1105 1244 2.753701 CGTTGATGGGGTGGGTGA 59.246 61.111 0.00 0.00 0.00 4.02
1151 1292 1.238439 GGAGAGCGAGAGAGAGATGG 58.762 60.000 0.00 0.00 0.00 3.51
1153 1294 1.072331 GAGGGAGAGCGAGAGAGAGAT 59.928 57.143 0.00 0.00 0.00 2.75
1247 1603 2.055042 GCGCAGGAGGAGGAGAAGA 61.055 63.158 0.30 0.00 0.00 2.87
1300 1656 2.653130 CGCCGTACGGATCGTTCC 60.653 66.667 37.62 16.57 41.54 3.62
1395 1752 0.685097 ACTAGCCGAAGTGGAAAGCA 59.315 50.000 0.00 0.00 42.00 3.91
1403 1760 3.505293 ACTCGAAGTTTACTAGCCGAAGT 59.495 43.478 0.00 0.00 0.00 3.01
1407 1764 3.361414 GCTACTCGAAGTTTACTAGCCG 58.639 50.000 0.00 0.00 0.00 5.52
1412 1769 3.572604 AAGCGCTACTCGAAGTTTACT 57.427 42.857 12.05 0.00 41.67 2.24
1417 1774 3.190953 AGAAACTAAGCGCTACTCGAAGT 59.809 43.478 12.05 4.97 41.67 3.01
1418 1775 3.544285 CAGAAACTAAGCGCTACTCGAAG 59.456 47.826 12.05 4.29 41.67 3.79
1420 1777 2.486982 ACAGAAACTAAGCGCTACTCGA 59.513 45.455 12.05 0.00 41.67 4.04
1421 1778 2.594654 CACAGAAACTAAGCGCTACTCG 59.405 50.000 12.05 1.49 42.12 4.18
1422 1779 2.345942 GCACAGAAACTAAGCGCTACTC 59.654 50.000 12.05 3.00 0.00 2.59
1423 1780 2.288825 TGCACAGAAACTAAGCGCTACT 60.289 45.455 12.05 0.00 0.00 2.57
1436 1794 2.331893 CGCCCGGAAATGCACAGAA 61.332 57.895 0.73 0.00 0.00 3.02
1438 1796 2.114670 ATCGCCCGGAAATGCACAG 61.115 57.895 0.73 0.00 0.00 3.66
1452 1817 0.566593 GTCGTTAACTCGCTCATCGC 59.433 55.000 3.71 0.00 38.27 4.58
1510 1886 0.588252 GGATGCATTCGGATGGAACG 59.412 55.000 0.51 0.00 37.15 3.95
1519 1895 1.645455 CAAGCCTCGGATGCATTCG 59.355 57.895 21.79 21.79 0.00 3.34
1559 1935 2.198304 ATCCCAGTTTCGTCCCTGCC 62.198 60.000 0.00 0.00 0.00 4.85
1563 1939 0.392595 GTCCATCCCAGTTTCGTCCC 60.393 60.000 0.00 0.00 0.00 4.46
1573 1949 2.653726 CAATGAATTCCGTCCATCCCA 58.346 47.619 2.27 0.00 0.00 4.37
1612 1988 3.222603 CTTTTGAGGCTGGGTTTGTAGT 58.777 45.455 0.00 0.00 0.00 2.73
1615 1991 1.063266 TCCTTTTGAGGCTGGGTTTGT 60.063 47.619 0.00 0.00 0.00 2.83
1616 1992 1.703411 TCCTTTTGAGGCTGGGTTTG 58.297 50.000 0.00 0.00 0.00 2.93
1617 1993 2.470057 TTCCTTTTGAGGCTGGGTTT 57.530 45.000 0.00 0.00 0.00 3.27
1618 1994 2.434336 GTTTTCCTTTTGAGGCTGGGTT 59.566 45.455 0.00 0.00 0.00 4.11
1619 1995 2.039418 GTTTTCCTTTTGAGGCTGGGT 58.961 47.619 0.00 0.00 0.00 4.51
1620 1996 2.038659 TGTTTTCCTTTTGAGGCTGGG 58.961 47.619 0.00 0.00 0.00 4.45
1621 1997 3.817709 TTGTTTTCCTTTTGAGGCTGG 57.182 42.857 0.00 0.00 0.00 4.85
1622 1998 4.567959 CACTTTGTTTTCCTTTTGAGGCTG 59.432 41.667 0.00 0.00 0.00 4.85
1767 2144 3.680937 CGCACAAATCCAAAGATGCATTT 59.319 39.130 0.00 0.00 31.29 2.32
1804 2182 1.520666 GTGGCCGGTGCATACTACT 59.479 57.895 1.90 0.00 40.13 2.57
1834 2228 5.048921 TCACTAGTTCACTACTCGAAACCAG 60.049 44.000 0.00 0.00 38.33 4.00
1835 2229 4.823442 TCACTAGTTCACTACTCGAAACCA 59.177 41.667 0.00 0.00 38.33 3.67
1836 2230 5.368256 TCACTAGTTCACTACTCGAAACC 57.632 43.478 0.00 0.00 38.33 3.27
1837 2231 7.215942 CGTTATCACTAGTTCACTACTCGAAAC 59.784 40.741 0.00 0.00 38.33 2.78
1838 2232 7.239271 CGTTATCACTAGTTCACTACTCGAAA 58.761 38.462 0.00 0.00 38.33 3.46
1839 2233 6.674037 GCGTTATCACTAGTTCACTACTCGAA 60.674 42.308 0.00 0.00 38.33 3.71
1840 2234 5.220548 GCGTTATCACTAGTTCACTACTCGA 60.221 44.000 0.00 0.00 38.33 4.04
1845 2239 4.703575 ACCAGCGTTATCACTAGTTCACTA 59.296 41.667 0.00 0.00 0.00 2.74
1847 2241 3.846360 ACCAGCGTTATCACTAGTTCAC 58.154 45.455 0.00 0.00 0.00 3.18
1885 2279 3.311596 GCCTAGGACGCAAAAATCGTTAT 59.688 43.478 14.75 0.00 40.59 1.89
1950 2348 2.761208 TCCTAGCTTCCTAGTGTCTTGC 59.239 50.000 0.00 0.00 39.56 4.01
2014 2416 4.527509 TCTCAGTCTCAGTTCACCATTC 57.472 45.455 0.00 0.00 0.00 2.67
2046 2448 9.270640 ACAAGATAGATCATATGTGCTTTCTTC 57.729 33.333 19.48 8.97 30.01 2.87
2059 2461 8.215736 TGGATGTGAATGAACAAGATAGATCAT 58.784 33.333 0.00 0.00 33.13 2.45
2310 2714 2.025155 TCTCTACTAAGCTCTTGCGGG 58.975 52.381 0.00 0.00 45.42 6.13
2376 2781 1.475213 GCTCCCTCCGTCCCAAAATAG 60.475 57.143 0.00 0.00 0.00 1.73
2424 2829 1.542915 CCTCAAGCAACAACCATCCAG 59.457 52.381 0.00 0.00 0.00 3.86
2426 2831 1.909700 TCCTCAAGCAACAACCATCC 58.090 50.000 0.00 0.00 0.00 3.51
2443 2848 2.432146 GCAATTCATCTTCCCCCTTTCC 59.568 50.000 0.00 0.00 0.00 3.13
2457 2862 6.008960 AGGCCCAAAAATTAAATGCAATTCA 58.991 32.000 0.00 0.00 33.67 2.57
2494 2899 2.169561 TCCACGGCAGCAATATAACTCA 59.830 45.455 0.00 0.00 0.00 3.41
2666 3095 8.664211 ATGTATAGCTAGATGCATTCATGATG 57.336 34.615 0.00 0.00 45.94 3.07
2683 3112 9.921637 ACTTAGCAGAAGATAGAAATGTATAGC 57.078 33.333 5.47 0.00 0.00 2.97
2698 3127 2.737252 GGGTTCGACAACTTAGCAGAAG 59.263 50.000 0.00 0.00 32.50 2.85
2714 3143 6.068670 ACAACATATAATAGCCCAAGGGTTC 58.931 40.000 7.05 0.00 37.65 3.62
2716 3145 5.133660 TGACAACATATAATAGCCCAAGGGT 59.866 40.000 7.05 0.00 37.65 4.34
2836 3265 2.108168 TGTCTATCCTCCAGAAACGGG 58.892 52.381 0.00 0.00 0.00 5.28
2892 3321 9.244799 GAAAACGGTCATGGGATAAAAATATTC 57.755 33.333 0.00 0.00 0.00 1.75
2927 3375 3.181466 ACATGCTCCTGAATATGCACGTA 60.181 43.478 0.00 0.00 38.29 3.57
2955 3403 6.768381 GCATACAAGCTTCTTAGTATTCCCTT 59.232 38.462 0.00 0.00 0.00 3.95
3005 3454 1.308783 GGCCTAACCTCAGCAACTGC 61.309 60.000 0.00 0.00 37.00 4.40
3494 3943 1.063867 GTCTGGTCCTAGTAGCTGGGA 60.064 57.143 0.00 0.00 38.81 4.37
3526 3975 5.020132 AGGATATGTCTGGTCCTAGTATGC 58.980 45.833 0.00 0.00 40.49 3.14
3527 3976 6.153680 GGAAGGATATGTCTGGTCCTAGTATG 59.846 46.154 0.00 0.00 41.40 2.39
3528 3977 6.047359 AGGAAGGATATGTCTGGTCCTAGTAT 59.953 42.308 7.15 0.00 41.40 2.12
3529 3978 5.375956 AGGAAGGATATGTCTGGTCCTAGTA 59.624 44.000 7.15 0.00 41.40 1.82
3530 3979 4.171044 AGGAAGGATATGTCTGGTCCTAGT 59.829 45.833 7.15 0.00 41.40 2.57
3531 3980 4.746466 AGGAAGGATATGTCTGGTCCTAG 58.254 47.826 7.15 0.00 41.40 3.02
3532 3981 4.834406 AGGAAGGATATGTCTGGTCCTA 57.166 45.455 7.15 0.00 41.40 2.94
3533 3982 3.715648 AGGAAGGATATGTCTGGTCCT 57.284 47.619 4.19 4.19 44.04 3.85
3534 3983 3.071747 GGAAGGAAGGATATGTCTGGTCC 59.928 52.174 0.00 0.00 0.00 4.46
3535 3984 3.711704 TGGAAGGAAGGATATGTCTGGTC 59.288 47.826 0.00 0.00 0.00 4.02
3536 3985 3.736094 TGGAAGGAAGGATATGTCTGGT 58.264 45.455 0.00 0.00 0.00 4.00
3537 3986 4.410228 TCTTGGAAGGAAGGATATGTCTGG 59.590 45.833 0.00 0.00 0.00 3.86
3538 3987 5.104776 TGTCTTGGAAGGAAGGATATGTCTG 60.105 44.000 0.00 0.00 0.00 3.51
3539 3988 5.032846 TGTCTTGGAAGGAAGGATATGTCT 58.967 41.667 0.00 0.00 0.00 3.41
3540 3989 5.119694 GTGTCTTGGAAGGAAGGATATGTC 58.880 45.833 0.00 0.00 0.00 3.06
3541 3990 4.080299 GGTGTCTTGGAAGGAAGGATATGT 60.080 45.833 0.00 0.00 0.00 2.29
3542 3991 4.455606 GGTGTCTTGGAAGGAAGGATATG 58.544 47.826 0.00 0.00 0.00 1.78
3543 3992 3.459969 GGGTGTCTTGGAAGGAAGGATAT 59.540 47.826 0.00 0.00 0.00 1.63
3544 3993 2.844348 GGGTGTCTTGGAAGGAAGGATA 59.156 50.000 0.00 0.00 0.00 2.59
3545 3994 1.636003 GGGTGTCTTGGAAGGAAGGAT 59.364 52.381 0.00 0.00 0.00 3.24
3546 3995 1.064825 GGGTGTCTTGGAAGGAAGGA 58.935 55.000 0.00 0.00 0.00 3.36
3547 3996 0.771127 TGGGTGTCTTGGAAGGAAGG 59.229 55.000 0.00 0.00 0.00 3.46
3548 3997 2.307098 AGATGGGTGTCTTGGAAGGAAG 59.693 50.000 0.00 0.00 0.00 3.46
3549 3998 2.348472 AGATGGGTGTCTTGGAAGGAA 58.652 47.619 0.00 0.00 0.00 3.36
3550 3999 2.044793 AGATGGGTGTCTTGGAAGGA 57.955 50.000 0.00 0.00 0.00 3.36
3551 4000 2.887151 AAGATGGGTGTCTTGGAAGG 57.113 50.000 0.00 0.00 37.08 3.46
3552 4001 3.084786 GGAAAGATGGGTGTCTTGGAAG 58.915 50.000 0.00 0.00 38.41 3.46
3553 4002 2.445145 TGGAAAGATGGGTGTCTTGGAA 59.555 45.455 0.00 0.00 38.41 3.53
3672 4122 6.644347 TGAAGTGCTTCCAAACCAAAATAAA 58.356 32.000 9.18 0.00 38.77 1.40
3673 4123 6.227298 TGAAGTGCTTCCAAACCAAAATAA 57.773 33.333 9.18 0.00 38.77 1.40
3674 4124 5.860941 TGAAGTGCTTCCAAACCAAAATA 57.139 34.783 9.18 0.00 38.77 1.40
3675 4125 4.751767 TGAAGTGCTTCCAAACCAAAAT 57.248 36.364 9.18 0.00 38.77 1.82
3753 4203 3.838120 TCAACTGACAAGTAGCTCATCG 58.162 45.455 0.00 0.00 34.77 3.84
3774 4224 4.795962 GCACCAGATCACCGTGAAATTTTT 60.796 41.667 5.07 0.00 0.00 1.94
3922 4373 9.710900 CAGGTTGCAACTATGATACAGATATAA 57.289 33.333 27.64 0.00 0.00 0.98
4098 4550 5.700832 CACTCAAAAGTAGCATAACACCTGA 59.299 40.000 0.00 0.00 33.25 3.86
4192 4644 1.071605 CAGGCAACGAGTTACTGAGC 58.928 55.000 11.85 1.61 46.39 4.26
4218 4684 9.783081 AACTGCTGAAAAGGATAAATGAAAAAT 57.217 25.926 0.00 0.00 0.00 1.82
4231 4697 5.754890 AGCATTTTTACAACTGCTGAAAAGG 59.245 36.000 5.74 0.00 44.84 3.11
4322 4788 3.679824 ACAGCCACACCTAAGAGTAAC 57.320 47.619 0.00 0.00 0.00 2.50
4351 4817 6.888105 TCATAAGAATGCTTCACCTGATACA 58.112 36.000 0.00 0.00 35.56 2.29
4467 4933 3.378861 TTCCACATTGCCATCACCATA 57.621 42.857 0.00 0.00 0.00 2.74
4478 4944 1.879380 TCTGTCGCCTTTTCCACATTG 59.121 47.619 0.00 0.00 0.00 2.82
4487 4953 0.600255 CGGTTGTCTCTGTCGCCTTT 60.600 55.000 0.00 0.00 0.00 3.11
4493 4959 5.282510 CCTATTACATCGGTTGTCTCTGTC 58.717 45.833 0.00 0.00 39.87 3.51
4495 4961 4.051922 GCCTATTACATCGGTTGTCTCTG 58.948 47.826 0.00 0.00 39.87 3.35
4505 4971 5.116180 TCCTCTTGTTTGCCTATTACATCG 58.884 41.667 0.00 0.00 0.00 3.84
4556 5022 5.491070 TCATGGGAGTCAGTATTGTCTTTG 58.509 41.667 0.00 0.00 0.00 2.77
4589 5055 0.764890 CTGACCTCCCTGTGTTTCCA 59.235 55.000 0.00 0.00 0.00 3.53
4600 5066 2.354604 CCTTCTTCAGCTTCTGACCTCC 60.355 54.545 0.00 0.00 40.46 4.30
4627 5093 2.397549 CATTATCATCTGCGCGACTGA 58.602 47.619 12.10 11.47 0.00 3.41
4802 5268 1.481363 TCAGCTTGCTCTCCATCTGAG 59.519 52.381 0.00 0.00 42.90 3.35
4832 5298 1.013005 CAGCTTGAGACTCCACTGCG 61.013 60.000 0.00 0.00 0.00 5.18
4858 5324 4.518249 CTTGGTATCTTCAGAAAGGGACC 58.482 47.826 0.00 0.00 37.79 4.46
5031 5497 2.162681 CCCTTCATGTTCAGACCCAAC 58.837 52.381 0.00 0.00 0.00 3.77
5056 5522 4.094442 CAGATGTGGTCACAGATGATGTTG 59.906 45.833 9.72 0.00 45.48 3.33
5255 5721 4.395519 TGCGTATTTGCAGCCTGT 57.604 50.000 0.00 0.00 40.62 4.00
5299 5765 2.691771 CCTTCAGCAGCAGCAGCAG 61.692 63.158 12.92 3.97 45.49 4.24
5300 5766 2.671963 CCTTCAGCAGCAGCAGCA 60.672 61.111 12.92 0.00 45.49 4.41
5301 5767 2.359602 TCCTTCAGCAGCAGCAGC 60.360 61.111 3.17 0.46 45.49 5.25
5621 6087 9.612620 GATGTAACCTTAATCTGAACAAACAAG 57.387 33.333 0.00 0.00 0.00 3.16
5665 6131 1.526917 ACCACAGTTCTGCACCAGC 60.527 57.895 0.00 0.00 42.57 4.85
5666 6132 1.789078 GCACCACAGTTCTGCACCAG 61.789 60.000 0.00 0.00 0.00 4.00
5667 6133 1.823470 GCACCACAGTTCTGCACCA 60.823 57.895 0.00 0.00 0.00 4.17
5668 6134 1.789078 CTGCACCACAGTTCTGCACC 61.789 60.000 0.00 0.00 41.86 5.01
5669 6135 1.650912 CTGCACCACAGTTCTGCAC 59.349 57.895 0.00 0.00 41.86 4.57
5670 6136 4.146058 CTGCACCACAGTTCTGCA 57.854 55.556 0.00 2.51 41.86 4.41
5675 6141 9.430533 ATGGATAACATAGTCTGCACCACAGTT 62.431 40.741 0.00 0.00 42.00 3.16
5676 6142 8.046504 ATGGATAACATAGTCTGCACCACAGT 62.047 42.308 0.00 0.00 42.00 3.55
5677 6143 5.685861 ATGGATAACATAGTCTGCACCACAG 60.686 44.000 0.00 0.00 42.42 3.66
5678 6144 3.517500 TGGATAACATAGTCTGCACCACA 59.482 43.478 0.00 0.00 0.00 4.17
5679 6145 4.137116 TGGATAACATAGTCTGCACCAC 57.863 45.455 0.00 0.00 0.00 4.16
5695 6174 6.038603 GCAAATAGTCTTTCAGTGCATGGATA 59.961 38.462 0.00 0.00 0.00 2.59
5753 6232 0.308993 GCAGCCAAAGTCACACTGTC 59.691 55.000 0.00 0.00 0.00 3.51
5757 6236 2.154462 ACATAGCAGCCAAAGTCACAC 58.846 47.619 0.00 0.00 0.00 3.82
5783 6262 2.093973 CGAACAGAGTACCTTGCAGGAT 60.094 50.000 8.91 0.00 37.67 3.24
5784 6263 1.272490 CGAACAGAGTACCTTGCAGGA 59.728 52.381 8.91 0.00 37.67 3.86
5796 6275 2.102633 GTATCGAGCGAACGAACAGAG 58.897 52.381 8.25 0.00 45.16 3.35
5809 6288 2.655364 CGCCAGCGTGGTATCGAG 60.655 66.667 3.35 0.00 40.46 4.04
5900 6379 4.580580 ACCAAAAGGCTACAGAGAAAACAG 59.419 41.667 0.00 0.00 0.00 3.16
5988 6474 1.542767 CCGCATCCTGATTCTGCTGAT 60.543 52.381 0.00 0.00 33.75 2.90
6024 6510 4.916249 AGTAGCGACACTCGTAAAAAGAAG 59.084 41.667 0.00 0.00 42.81 2.85
6035 6521 0.038159 ACAAGGCAGTAGCGACACTC 60.038 55.000 0.00 0.00 43.41 3.51
6042 6528 5.392057 GGAACAAAGAATACAAGGCAGTAGC 60.392 44.000 0.00 0.00 41.10 3.58
6054 6540 6.460781 TCAAGCGACTAAGGAACAAAGAATA 58.539 36.000 0.00 0.00 0.00 1.75
6079 6565 1.613437 CCAATCCACGCAACCTTCTTT 59.387 47.619 0.00 0.00 0.00 2.52
6083 6569 2.275380 GCCCAATCCACGCAACCTT 61.275 57.895 0.00 0.00 0.00 3.50
6084 6570 2.676471 GCCCAATCCACGCAACCT 60.676 61.111 0.00 0.00 0.00 3.50
6086 6572 2.568090 CAGCCCAATCCACGCAAC 59.432 61.111 0.00 0.00 0.00 4.17
6112 6598 4.096732 GGCAACAAATGGTCTGTATCAC 57.903 45.455 0.00 0.00 0.00 3.06
6302 6801 4.018490 TGGATAGGTGTAGCGACAGTTTA 58.982 43.478 0.00 0.00 35.82 2.01
6326 6825 0.394192 TATCTGCGCCCCTTCATCAG 59.606 55.000 4.18 0.00 0.00 2.90
6368 6868 4.513442 AGATGTTAAGTTTGGCTGCGATA 58.487 39.130 0.00 0.00 0.00 2.92
6382 6882 4.715297 GGGTCCTCAGGTCTTAGATGTTAA 59.285 45.833 0.00 0.00 0.00 2.01
6439 6939 2.755876 TCTGAGAGCACGCCGGAT 60.756 61.111 5.05 0.00 0.00 4.18
6479 6979 3.834813 AGTACAGTTCTGAAGATGGAGCA 59.165 43.478 6.83 0.00 0.00 4.26
6526 7026 1.746239 TGGTGGCGTCGACGATAGA 60.746 57.895 39.74 17.31 43.02 1.98
6572 7072 1.938814 CGTGCACAGTTGTTTGCGG 60.939 57.895 18.64 0.00 41.96 5.69
6731 7231 1.363744 CTTCGGTGGAGATGTCAAGC 58.636 55.000 0.00 0.00 0.00 4.01
6770 7270 2.040278 AGAGGCAGGAGGTGGAGG 59.960 66.667 0.00 0.00 0.00 4.30
6811 7311 1.066858 GTTTCTCTCGTGGGAGCATCA 60.067 52.381 0.00 0.00 40.26 3.07
6894 7394 2.093288 TCTACTATCGACCCACTCGTGT 60.093 50.000 0.00 0.00 43.45 4.49
6909 7409 4.277672 GGAGGCATTGTCGTGTATCTACTA 59.722 45.833 0.00 0.00 0.00 1.82
6915 7415 2.170397 TGATGGAGGCATTGTCGTGTAT 59.830 45.455 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.