Multiple sequence alignment - TraesCS7B01G271000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G271000 chr7B 100.000 3082 0 0 1 3082 497532337 497529256 0.000000e+00 5692.0
1 TraesCS7B01G271000 chr7B 86.972 545 69 2 2539 3082 551747332 551746789 2.030000e-171 612.0
2 TraesCS7B01G271000 chr7B 86.257 553 65 6 2539 3082 72650235 72649685 9.520000e-165 590.0
3 TraesCS7B01G271000 chr6B 91.625 1588 120 7 1354 2938 698268658 698270235 0.000000e+00 2183.0
4 TraesCS7B01G271000 chr6B 89.835 364 36 1 968 1331 698268303 698268665 1.670000e-127 466.0
5 TraesCS7B01G271000 chr6B 86.520 319 26 8 27 328 507937632 507937314 4.920000e-88 335.0
6 TraesCS7B01G271000 chr6B 91.250 240 19 2 432 670 507936548 507936310 2.960000e-85 326.0
7 TraesCS7B01G271000 chr6B 90.833 240 20 2 432 670 534284794 534285032 1.380000e-83 320.0
8 TraesCS7B01G271000 chr6B 85.127 316 31 8 30 329 534283708 534284023 2.980000e-80 309.0
9 TraesCS7B01G271000 chr6B 100.000 28 0 0 507 534 534284216 534284243 6.000000e-03 52.8
10 TraesCS7B01G271000 chr2A 91.703 1133 80 5 974 2106 30574911 30573793 0.000000e+00 1559.0
11 TraesCS7B01G271000 chr2A 95.349 43 0 2 1 42 386489200 386489159 1.980000e-07 67.6
12 TraesCS7B01G271000 chr2A 95.349 43 0 2 1 42 386494840 386494799 1.980000e-07 67.6
13 TraesCS7B01G271000 chr2D 91.615 1133 81 5 974 2106 28771929 28770811 0.000000e+00 1554.0
14 TraesCS7B01G271000 chr2D 90.663 407 33 5 2144 2550 128105998 128106399 1.260000e-148 536.0
15 TraesCS7B01G271000 chr2D 90.663 407 33 5 2144 2550 602060019 602060420 1.260000e-148 536.0
16 TraesCS7B01G271000 chr2D 86.770 257 16 1 740 978 83998063 83997807 1.410000e-68 270.0
17 TraesCS7B01G271000 chr2D 92.262 168 13 0 809 976 135294964 135295131 3.970000e-59 239.0
18 TraesCS7B01G271000 chr2D 97.619 42 1 0 769 810 135294906 135294947 4.260000e-09 73.1
19 TraesCS7B01G271000 chr2D 97.619 42 1 0 1 42 410736658 410736699 4.260000e-09 73.1
20 TraesCS7B01G271000 chr2B 91.527 1133 82 5 974 2106 46116286 46115168 0.000000e+00 1548.0
21 TraesCS7B01G271000 chr2B 90.476 63 6 0 748 810 166028425 166028363 1.970000e-12 84.2
22 TraesCS7B01G271000 chr2B 95.833 48 2 0 2108 2155 166027927 166027880 9.160000e-11 78.7
23 TraesCS7B01G271000 chr2B 97.619 42 0 1 1 42 383450859 383450899 1.530000e-08 71.3
24 TraesCS7B01G271000 chr2B 89.130 46 5 0 2105 2150 727056794 727056839 1.190000e-04 58.4
25 TraesCS7B01G271000 chr1B 89.174 545 44 8 2539 3082 658263103 658263633 0.000000e+00 665.0
26 TraesCS7B01G271000 chr1B 87.978 549 48 11 2539 3082 314178174 314178709 1.560000e-177 632.0
27 TraesCS7B01G271000 chr1B 87.147 319 26 6 26 329 168902847 168903165 6.330000e-92 348.0
28 TraesCS7B01G271000 chr1B 91.775 231 18 1 432 661 168903977 168904207 1.380000e-83 320.0
29 TraesCS7B01G271000 chr1B 94.845 97 5 0 339 435 168903528 168903624 5.320000e-33 152.0
30 TraesCS7B01G271000 chr1B 95.238 42 2 0 1 42 310255893 310255852 1.980000e-07 67.6
31 TraesCS7B01G271000 chr3B 88.807 545 47 4 2539 3081 628989416 628989948 0.000000e+00 656.0
32 TraesCS7B01G271000 chr3B 90.391 281 26 1 432 711 174723213 174722933 4.860000e-98 368.0
33 TraesCS7B01G271000 chr3B 90.391 281 26 1 432 711 174736630 174736350 4.860000e-98 368.0
34 TraesCS7B01G271000 chr3B 86.943 314 26 3 30 329 174724342 174724030 3.810000e-89 339.0
35 TraesCS7B01G271000 chr3B 94.845 97 5 0 339 435 174723665 174723569 5.320000e-33 152.0
36 TraesCS7B01G271000 chr4B 89.484 504 44 8 2539 3038 178806123 178805625 2.020000e-176 628.0
37 TraesCS7B01G271000 chr4D 91.646 407 29 4 2144 2550 442238632 442238231 2.680000e-155 558.0
38 TraesCS7B01G271000 chr4D 90.394 406 34 5 2144 2549 440628871 440628471 2.100000e-146 529.0
39 TraesCS7B01G271000 chr4D 89.753 283 22 7 433 711 33887478 33887757 3.780000e-94 355.0
40 TraesCS7B01G271000 chr4D 87.912 273 32 1 433 704 380380670 380380942 1.380000e-83 320.0
41 TraesCS7B01G271000 chr4D 86.813 273 18 1 724 978 262545038 262545310 3.890000e-74 289.0
42 TraesCS7B01G271000 chr5A 85.451 543 70 4 2539 3074 349141992 349142532 9.650000e-155 556.0
43 TraesCS7B01G271000 chr7D 91.133 406 31 5 2145 2550 415661576 415661976 2.090000e-151 545.0
44 TraesCS7B01G271000 chr7D 95.652 46 2 0 2105 2150 410861116 410861161 1.190000e-09 75.0
45 TraesCS7B01G271000 chr7D 92.308 39 3 0 2103 2141 9537529 9537491 4.290000e-04 56.5
46 TraesCS7B01G271000 chr4A 84.755 551 76 3 2539 3082 528313432 528312883 2.090000e-151 545.0
47 TraesCS7B01G271000 chr3D 91.294 402 30 5 2149 2550 336558974 336559370 7.520000e-151 544.0
48 TraesCS7B01G271000 chr3D 91.111 405 29 6 2146 2550 139090820 139090423 2.700000e-150 542.0
49 TraesCS7B01G271000 chr3D 90.418 407 32 6 2144 2550 507576050 507576449 2.100000e-146 529.0
50 TraesCS7B01G271000 chr3D 87.692 195 20 3 1137 1331 467977968 467977778 1.110000e-54 224.0
51 TraesCS7B01G271000 chr3D 86.207 87 12 0 619 705 162660571 162660657 9.100000e-16 95.3
52 TraesCS7B01G271000 chr3D 100.000 37 0 0 1 37 540599411 540599447 5.510000e-08 69.4
53 TraesCS7B01G271000 chr3D 97.561 41 0 1 2 42 568883358 568883397 5.510000e-08 69.4
54 TraesCS7B01G271000 chr3D 97.561 41 0 1 2 42 568888702 568888741 5.510000e-08 69.4
55 TraesCS7B01G271000 chr6A 86.232 276 34 4 433 705 405283614 405283888 2.320000e-76 296.0
56 TraesCS7B01G271000 chr6A 87.429 175 21 1 532 705 531245047 531245221 1.870000e-47 200.0
57 TraesCS7B01G271000 chr6A 90.722 97 5 2 339 435 405283180 405283272 3.230000e-25 126.0
58 TraesCS7B01G271000 chr6A 95.238 42 1 1 1 42 493082505 493082465 7.130000e-07 65.8
59 TraesCS7B01G271000 chr6A 95.238 42 1 1 1 42 493088139 493088099 7.130000e-07 65.8
60 TraesCS7B01G271000 chr6D 86.447 273 19 1 724 978 178607937 178608209 1.810000e-72 283.0
61 TraesCS7B01G271000 chr6D 88.571 175 18 2 532 704 230029713 230029539 8.660000e-51 211.0
62 TraesCS7B01G271000 chr6D 100.000 36 0 0 1 36 35842830 35842865 1.980000e-07 67.6
63 TraesCS7B01G271000 chr6D 100.000 36 0 0 1 36 55503840 55503805 1.980000e-07 67.6
64 TraesCS7B01G271000 chr6D 100.000 36 0 0 1 36 178607251 178607286 1.980000e-07 67.6
65 TraesCS7B01G271000 chr6D 100.000 36 0 0 1 36 285956551 285956516 1.980000e-07 67.6
66 TraesCS7B01G271000 chr6D 100.000 36 0 0 1 36 325634139 325634104 1.980000e-07 67.6
67 TraesCS7B01G271000 chr6D 91.667 48 4 0 2103 2150 358490324 358490277 1.980000e-07 67.6
68 TraesCS7B01G271000 chr6D 95.238 42 1 1 1 42 270864442 270864402 7.130000e-07 65.8
69 TraesCS7B01G271000 chr6D 95.238 42 1 1 1 42 270870391 270870351 7.130000e-07 65.8
70 TraesCS7B01G271000 chr5D 86.447 273 19 1 724 978 133231932 133232204 1.810000e-72 283.0
71 TraesCS7B01G271000 chr5D 89.655 87 9 0 619 705 501678032 501677946 9.030000e-21 111.0
72 TraesCS7B01G271000 chr5D 94.286 35 2 0 2103 2137 72568593 72568559 2.000000e-03 54.7
73 TraesCS7B01G271000 chr1D 86.381 257 17 1 740 978 492704658 492704914 6.550000e-67 265.0
74 TraesCS7B01G271000 chr1A 82.199 191 30 4 87 273 119239126 119238936 8.840000e-36 161.0
75 TraesCS7B01G271000 chr1A 95.238 42 2 0 1 42 506664178 506664137 1.980000e-07 67.6
76 TraesCS7B01G271000 chrUn 100.000 36 0 0 1 36 34992726 34992691 1.980000e-07 67.6
77 TraesCS7B01G271000 chrUn 100.000 36 0 0 1 36 34995674 34995639 1.980000e-07 67.6
78 TraesCS7B01G271000 chrUn 100.000 36 0 0 1 36 253553078 253553113 1.980000e-07 67.6
79 TraesCS7B01G271000 chrUn 100.000 36 0 0 1 36 319133847 319133882 1.980000e-07 67.6
80 TraesCS7B01G271000 chrUn 100.000 35 0 0 1 35 36724588 36724554 7.130000e-07 65.8
81 TraesCS7B01G271000 chrUn 100.000 35 0 0 1 35 76721236 76721270 7.130000e-07 65.8
82 TraesCS7B01G271000 chrUn 100.000 35 0 0 1 35 76727377 76727411 7.130000e-07 65.8
83 TraesCS7B01G271000 chrUn 100.000 35 0 0 1 35 76742318 76742352 7.130000e-07 65.8
84 TraesCS7B01G271000 chrUn 100.000 35 0 0 1 35 76934038 76934072 7.130000e-07 65.8
85 TraesCS7B01G271000 chr7A 91.304 46 4 0 2105 2150 472350687 472350732 2.570000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G271000 chr7B 497529256 497532337 3081 True 5692.000000 5692 100.000000 1 3082 1 chr7B.!!$R2 3081
1 TraesCS7B01G271000 chr7B 551746789 551747332 543 True 612.000000 612 86.972000 2539 3082 1 chr7B.!!$R3 543
2 TraesCS7B01G271000 chr7B 72649685 72650235 550 True 590.000000 590 86.257000 2539 3082 1 chr7B.!!$R1 543
3 TraesCS7B01G271000 chr6B 698268303 698270235 1932 False 1324.500000 2183 90.730000 968 2938 2 chr6B.!!$F2 1970
4 TraesCS7B01G271000 chr6B 507936310 507937632 1322 True 330.500000 335 88.885000 27 670 2 chr6B.!!$R1 643
5 TraesCS7B01G271000 chr6B 534283708 534285032 1324 False 227.266667 320 91.986667 30 670 3 chr6B.!!$F1 640
6 TraesCS7B01G271000 chr2A 30573793 30574911 1118 True 1559.000000 1559 91.703000 974 2106 1 chr2A.!!$R1 1132
7 TraesCS7B01G271000 chr2D 28770811 28771929 1118 True 1554.000000 1554 91.615000 974 2106 1 chr2D.!!$R1 1132
8 TraesCS7B01G271000 chr2B 46115168 46116286 1118 True 1548.000000 1548 91.527000 974 2106 1 chr2B.!!$R1 1132
9 TraesCS7B01G271000 chr1B 658263103 658263633 530 False 665.000000 665 89.174000 2539 3082 1 chr1B.!!$F2 543
10 TraesCS7B01G271000 chr1B 314178174 314178709 535 False 632.000000 632 87.978000 2539 3082 1 chr1B.!!$F1 543
11 TraesCS7B01G271000 chr1B 168902847 168904207 1360 False 273.333333 348 91.255667 26 661 3 chr1B.!!$F3 635
12 TraesCS7B01G271000 chr3B 628989416 628989948 532 False 656.000000 656 88.807000 2539 3081 1 chr3B.!!$F1 542
13 TraesCS7B01G271000 chr3B 174722933 174724342 1409 True 286.333333 368 90.726333 30 711 3 chr3B.!!$R2 681
14 TraesCS7B01G271000 chr5A 349141992 349142532 540 False 556.000000 556 85.451000 2539 3074 1 chr5A.!!$F1 535
15 TraesCS7B01G271000 chr4A 528312883 528313432 549 True 545.000000 545 84.755000 2539 3082 1 chr4A.!!$R1 543
16 TraesCS7B01G271000 chr6A 405283180 405283888 708 False 211.000000 296 88.477000 339 705 2 chr6A.!!$F2 366

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 1636 0.03309 AGGAAAACACGGACGAGGTC 59.967 55.0 0.0 0.0 0.00 3.85 F
894 1637 0.03309 GGAAAACACGGACGAGGTCT 59.967 55.0 0.0 0.0 32.47 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 2543 0.112218 CCCACATTGAAGTCCCACCA 59.888 55.0 0.00 0.00 0.00 4.17 R
2779 3522 0.532196 GCCCCCGAATCTTAAGACGG 60.532 60.0 21.73 21.73 44.16 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.119611 TCCGCTCAACCCCTCTCA 59.880 61.111 0.00 0.00 0.00 3.27
18 19 1.535444 TCCGCTCAACCCCTCTCAA 60.535 57.895 0.00 0.00 0.00 3.02
19 20 1.078848 CCGCTCAACCCCTCTCAAG 60.079 63.158 0.00 0.00 0.00 3.02
20 21 1.743252 CGCTCAACCCCTCTCAAGC 60.743 63.158 0.00 0.00 0.00 4.01
21 22 1.682257 GCTCAACCCCTCTCAAGCT 59.318 57.895 0.00 0.00 0.00 3.74
22 23 0.905357 GCTCAACCCCTCTCAAGCTA 59.095 55.000 0.00 0.00 0.00 3.32
23 24 1.406205 GCTCAACCCCTCTCAAGCTAC 60.406 57.143 0.00 0.00 0.00 3.58
24 25 1.208293 CTCAACCCCTCTCAAGCTACC 59.792 57.143 0.00 0.00 0.00 3.18
25 26 0.984230 CAACCCCTCTCAAGCTACCA 59.016 55.000 0.00 0.00 0.00 3.25
26 27 0.984995 AACCCCTCTCAAGCTACCAC 59.015 55.000 0.00 0.00 0.00 4.16
27 28 0.178903 ACCCCTCTCAAGCTACCACA 60.179 55.000 0.00 0.00 0.00 4.17
28 29 1.207791 CCCCTCTCAAGCTACCACAT 58.792 55.000 0.00 0.00 0.00 3.21
33 34 4.262377 CCCTCTCAAGCTACCACATAGATG 60.262 50.000 0.00 0.00 31.83 2.90
52 53 2.048033 ACGCGCCGTGATAAACCA 60.048 55.556 5.73 0.00 39.18 3.67
58 59 0.390735 GCCGTGATAAACCACCGACT 60.391 55.000 0.00 0.00 33.67 4.18
73 74 4.082190 CCACCGACTTGAGATAGTCTTTGA 60.082 45.833 0.00 0.00 41.89 2.69
81 82 4.033009 TGAGATAGTCTTTGATGGAGCCA 58.967 43.478 0.00 0.00 0.00 4.75
132 133 4.935352 TGGTTTTGAAACTAGCAGCATT 57.065 36.364 6.57 0.00 38.89 3.56
143 144 0.251742 AGCAGCATTAGGGTTTGGCA 60.252 50.000 0.00 0.00 0.00 4.92
162 163 3.278367 CATTTTATGCATCGCTGAGGG 57.722 47.619 0.19 0.00 0.00 4.30
172 173 3.805108 GCATCGCTGAGGGAACATAATCT 60.805 47.826 2.54 0.00 0.00 2.40
258 264 4.444536 AGTTTTTCGGTAGCTGTTGTACA 58.555 39.130 0.00 0.00 0.00 2.90
293 312 2.422479 CGAGAAGGAACGATCTGTACCA 59.578 50.000 0.00 0.00 30.04 3.25
333 353 8.815565 TTTTAATACATATTTGGTGGCAGAGA 57.184 30.769 0.00 0.00 0.00 3.10
334 354 8.450578 TTTAATACATATTTGGTGGCAGAGAG 57.549 34.615 0.00 0.00 0.00 3.20
335 355 3.287867 ACATATTTGGTGGCAGAGAGG 57.712 47.619 0.00 0.00 0.00 3.69
337 357 3.266772 ACATATTTGGTGGCAGAGAGGAA 59.733 43.478 0.00 0.00 0.00 3.36
372 748 3.432262 TGTTCGAGACAGTCAGGGA 57.568 52.632 2.66 0.00 33.40 4.20
399 776 3.231736 AGCCGTGACCCGTTCTGT 61.232 61.111 0.00 0.00 33.66 3.41
411 788 2.413837 CCGTTCTGTTACAAGACCAGG 58.586 52.381 0.00 0.00 0.00 4.45
470 1211 1.086696 CCGCCTTTGTCATGATTCGT 58.913 50.000 0.00 0.00 0.00 3.85
484 1225 1.137086 GATTCGTAGCCTCAGAAGCCA 59.863 52.381 0.00 0.00 0.00 4.75
508 1249 2.523245 TGTACCATTGCTGAATTGCCA 58.477 42.857 0.00 0.00 0.00 4.92
513 1254 0.544833 ATTGCTGAATTGCCACCCCA 60.545 50.000 0.00 0.00 0.00 4.96
567 1309 3.581024 GCCTGATGCATTTGTTTCTCA 57.419 42.857 0.00 0.00 40.77 3.27
616 1359 1.375396 CCCTCGTTGTGGCAATCGA 60.375 57.895 8.96 8.96 0.00 3.59
661 1404 2.350895 CGGTGCATCTCCAACCCA 59.649 61.111 0.00 0.00 0.00 4.51
677 1420 2.590575 CACCGCCGGTTGAACAGT 60.591 61.111 5.76 0.00 31.02 3.55
694 1437 1.005867 GTCGTGCCAGTCCCGTTTA 60.006 57.895 0.00 0.00 0.00 2.01
705 1448 0.911053 TCCCGTTTATAAACCGCCCT 59.089 50.000 20.08 0.00 35.51 5.19
706 1449 1.018910 CCCGTTTATAAACCGCCCTG 58.981 55.000 20.08 7.11 35.51 4.45
711 1454 1.624479 TTATAAACCGCCCTGGCCGA 61.624 55.000 0.00 0.00 43.94 5.54
712 1455 2.035237 TATAAACCGCCCTGGCCGAG 62.035 60.000 0.00 0.00 43.94 4.63
718 1461 4.344865 GCCCTGGCCGAGGACAAA 62.345 66.667 19.43 0.00 46.33 2.83
719 1462 2.359975 CCCTGGCCGAGGACAAAC 60.360 66.667 19.43 0.00 46.33 2.93
720 1463 2.359975 CCTGGCCGAGGACAAACC 60.360 66.667 14.21 0.00 46.33 3.27
721 1464 2.359975 CTGGCCGAGGACAAACCC 60.360 66.667 0.00 0.00 40.05 4.11
722 1465 3.172106 TGGCCGAGGACAAACCCA 61.172 61.111 0.00 0.00 40.05 4.51
723 1466 2.355115 GGCCGAGGACAAACCCAT 59.645 61.111 0.00 0.00 40.05 4.00
724 1467 2.046285 GGCCGAGGACAAACCCATG 61.046 63.158 0.00 0.00 40.05 3.66
725 1468 1.002624 GCCGAGGACAAACCCATGA 60.003 57.895 0.00 0.00 40.05 3.07
726 1469 1.026718 GCCGAGGACAAACCCATGAG 61.027 60.000 0.00 0.00 40.05 2.90
727 1470 1.026718 CCGAGGACAAACCCATGAGC 61.027 60.000 0.00 0.00 40.05 4.26
728 1471 0.036010 CGAGGACAAACCCATGAGCT 60.036 55.000 0.00 0.00 40.05 4.09
729 1472 1.457346 GAGGACAAACCCATGAGCTG 58.543 55.000 0.00 0.00 40.05 4.24
730 1473 0.610232 AGGACAAACCCATGAGCTGC 60.610 55.000 0.00 0.00 40.05 5.25
731 1474 1.598701 GGACAAACCCATGAGCTGCC 61.599 60.000 0.00 0.00 0.00 4.85
732 1475 0.895100 GACAAACCCATGAGCTGCCA 60.895 55.000 0.00 0.00 0.00 4.92
733 1476 1.181098 ACAAACCCATGAGCTGCCAC 61.181 55.000 0.00 0.00 0.00 5.01
734 1477 1.607467 AAACCCATGAGCTGCCACC 60.607 57.895 0.00 0.00 0.00 4.61
735 1478 3.925630 AACCCATGAGCTGCCACCG 62.926 63.158 0.00 0.00 0.00 4.94
736 1479 4.415150 CCCATGAGCTGCCACCGT 62.415 66.667 0.00 0.00 0.00 4.83
737 1480 2.821366 CCATGAGCTGCCACCGTC 60.821 66.667 0.00 0.00 0.00 4.79
738 1481 3.190849 CATGAGCTGCCACCGTCG 61.191 66.667 0.00 0.00 0.00 5.12
739 1482 3.381983 ATGAGCTGCCACCGTCGA 61.382 61.111 0.00 0.00 0.00 4.20
740 1483 3.362399 ATGAGCTGCCACCGTCGAG 62.362 63.158 0.00 0.00 0.00 4.04
754 1497 2.048222 CGAGCACCTCGCCTTCAA 60.048 61.111 1.41 0.00 46.75 2.69
755 1498 2.097038 CGAGCACCTCGCCTTCAAG 61.097 63.158 1.41 0.00 46.75 3.02
756 1499 2.359230 AGCACCTCGCCTTCAAGC 60.359 61.111 0.00 0.00 44.04 4.01
757 1500 2.359230 GCACCTCGCCTTCAAGCT 60.359 61.111 0.00 0.00 32.94 3.74
758 1501 2.684843 GCACCTCGCCTTCAAGCTG 61.685 63.158 0.00 0.00 32.94 4.24
759 1502 1.004560 CACCTCGCCTTCAAGCTGA 60.005 57.895 0.00 0.00 0.00 4.26
760 1503 0.603707 CACCTCGCCTTCAAGCTGAA 60.604 55.000 0.00 0.00 34.79 3.02
768 1511 1.377536 CTTCAAGCTGAAGCCTAGCC 58.622 55.000 11.34 0.00 46.03 3.93
769 1512 0.987294 TTCAAGCTGAAGCCTAGCCT 59.013 50.000 0.00 0.00 42.07 4.58
770 1513 0.539051 TCAAGCTGAAGCCTAGCCTC 59.461 55.000 0.00 0.00 42.07 4.70
771 1514 0.463474 CAAGCTGAAGCCTAGCCTCC 60.463 60.000 0.00 0.00 42.07 4.30
772 1515 0.620121 AAGCTGAAGCCTAGCCTCCT 60.620 55.000 0.00 0.00 42.07 3.69
773 1516 1.048160 AGCTGAAGCCTAGCCTCCTC 61.048 60.000 0.00 0.00 42.07 3.71
774 1517 2.038814 GCTGAAGCCTAGCCTCCTCC 62.039 65.000 0.00 0.00 35.15 4.30
775 1518 0.689080 CTGAAGCCTAGCCTCCTCCA 60.689 60.000 0.00 0.00 0.00 3.86
776 1519 0.252696 TGAAGCCTAGCCTCCTCCAA 60.253 55.000 0.00 0.00 0.00 3.53
777 1520 0.912486 GAAGCCTAGCCTCCTCCAAA 59.088 55.000 0.00 0.00 0.00 3.28
778 1521 1.282157 GAAGCCTAGCCTCCTCCAAAA 59.718 52.381 0.00 0.00 0.00 2.44
779 1522 0.621082 AGCCTAGCCTCCTCCAAAAC 59.379 55.000 0.00 0.00 0.00 2.43
780 1523 0.394488 GCCTAGCCTCCTCCAAAACC 60.394 60.000 0.00 0.00 0.00 3.27
781 1524 0.991920 CCTAGCCTCCTCCAAAACCA 59.008 55.000 0.00 0.00 0.00 3.67
782 1525 1.340114 CCTAGCCTCCTCCAAAACCAC 60.340 57.143 0.00 0.00 0.00 4.16
783 1526 0.696501 TAGCCTCCTCCAAAACCACC 59.303 55.000 0.00 0.00 0.00 4.61
784 1527 1.971695 GCCTCCTCCAAAACCACCG 60.972 63.158 0.00 0.00 0.00 4.94
785 1528 1.454539 CCTCCTCCAAAACCACCGT 59.545 57.895 0.00 0.00 0.00 4.83
786 1529 0.605589 CCTCCTCCAAAACCACCGTC 60.606 60.000 0.00 0.00 0.00 4.79
787 1530 0.949105 CTCCTCCAAAACCACCGTCG 60.949 60.000 0.00 0.00 0.00 5.12
788 1531 2.613506 CCTCCAAAACCACCGTCGC 61.614 63.158 0.00 0.00 0.00 5.19
789 1532 2.950172 CTCCAAAACCACCGTCGCG 61.950 63.158 0.00 0.00 0.00 5.87
790 1533 4.676586 CCAAAACCACCGTCGCGC 62.677 66.667 0.00 0.00 0.00 6.86
791 1534 4.676586 CAAAACCACCGTCGCGCC 62.677 66.667 0.00 0.00 0.00 6.53
806 1549 4.011517 GCCCGGTCGTTTCCTCCA 62.012 66.667 0.00 0.00 0.00 3.86
807 1550 2.745037 CCCGGTCGTTTCCTCCAA 59.255 61.111 0.00 0.00 0.00 3.53
808 1551 1.375523 CCCGGTCGTTTCCTCCAAG 60.376 63.158 0.00 0.00 0.00 3.61
809 1552 2.033194 CCGGTCGTTTCCTCCAAGC 61.033 63.158 0.00 0.00 0.00 4.01
810 1553 1.004918 CGGTCGTTTCCTCCAAGCT 60.005 57.895 0.00 0.00 0.00 3.74
811 1554 0.602905 CGGTCGTTTCCTCCAAGCTT 60.603 55.000 0.00 0.00 0.00 3.74
812 1555 0.875059 GGTCGTTTCCTCCAAGCTTG 59.125 55.000 19.93 19.93 0.00 4.01
821 1564 4.766632 CCAAGCTTGGCCCCCTCC 62.767 72.222 31.70 0.00 42.21 4.30
822 1565 3.983420 CAAGCTTGGCCCCCTCCA 61.983 66.667 19.14 0.00 0.00 3.86
823 1566 2.948924 AAGCTTGGCCCCCTCCAT 60.949 61.111 0.00 0.00 35.77 3.41
824 1567 3.001358 AAGCTTGGCCCCCTCCATC 62.001 63.158 0.00 0.00 35.77 3.51
825 1568 4.529731 GCTTGGCCCCCTCCATCC 62.530 72.222 0.00 0.00 35.77 3.51
826 1569 3.023116 CTTGGCCCCCTCCATCCA 61.023 66.667 0.00 0.00 35.77 3.41
827 1570 3.346734 TTGGCCCCCTCCATCCAC 61.347 66.667 0.00 0.00 35.77 4.02
830 1573 3.728373 GCCCCCTCCATCCACGTT 61.728 66.667 0.00 0.00 0.00 3.99
831 1574 2.272146 CCCCCTCCATCCACGTTG 59.728 66.667 0.00 0.00 0.00 4.10
832 1575 2.438434 CCCCTCCATCCACGTTGC 60.438 66.667 0.00 0.00 0.00 4.17
833 1576 2.438434 CCCTCCATCCACGTTGCC 60.438 66.667 0.00 0.00 0.00 4.52
834 1577 2.819595 CCTCCATCCACGTTGCCG 60.820 66.667 0.00 0.00 40.83 5.69
835 1578 3.499737 CTCCATCCACGTTGCCGC 61.500 66.667 0.00 0.00 37.70 6.53
856 1599 3.345808 GTCAACAGCGCGCCTCAA 61.346 61.111 30.33 7.13 0.00 3.02
857 1600 3.043713 TCAACAGCGCGCCTCAAG 61.044 61.111 30.33 14.67 0.00 3.02
858 1601 4.748679 CAACAGCGCGCCTCAAGC 62.749 66.667 30.33 0.00 38.52 4.01
868 1611 4.680237 CCTCAAGCCGTCACCGCA 62.680 66.667 0.00 0.00 0.00 5.69
869 1612 2.664851 CTCAAGCCGTCACCGCAA 60.665 61.111 0.00 0.00 0.00 4.85
870 1613 2.031919 TCAAGCCGTCACCGCAAT 59.968 55.556 0.00 0.00 0.00 3.56
871 1614 1.970917 CTCAAGCCGTCACCGCAATC 61.971 60.000 0.00 0.00 0.00 2.67
872 1615 2.031919 AAGCCGTCACCGCAATCA 59.968 55.556 0.00 0.00 0.00 2.57
873 1616 1.599518 AAGCCGTCACCGCAATCAA 60.600 52.632 0.00 0.00 0.00 2.57
874 1617 1.169661 AAGCCGTCACCGCAATCAAA 61.170 50.000 0.00 0.00 0.00 2.69
875 1618 1.154225 GCCGTCACCGCAATCAAAG 60.154 57.895 0.00 0.00 0.00 2.77
876 1619 1.501741 CCGTCACCGCAATCAAAGG 59.498 57.895 0.00 0.00 0.00 3.11
877 1620 0.953471 CCGTCACCGCAATCAAAGGA 60.953 55.000 0.00 0.00 0.00 3.36
878 1621 0.871722 CGTCACCGCAATCAAAGGAA 59.128 50.000 0.00 0.00 0.00 3.36
879 1622 1.265635 CGTCACCGCAATCAAAGGAAA 59.734 47.619 0.00 0.00 0.00 3.13
880 1623 2.287308 CGTCACCGCAATCAAAGGAAAA 60.287 45.455 0.00 0.00 0.00 2.29
881 1624 3.049912 GTCACCGCAATCAAAGGAAAAC 58.950 45.455 0.00 0.00 0.00 2.43
882 1625 2.690497 TCACCGCAATCAAAGGAAAACA 59.310 40.909 0.00 0.00 0.00 2.83
883 1626 2.794350 CACCGCAATCAAAGGAAAACAC 59.206 45.455 0.00 0.00 0.00 3.32
884 1627 2.050691 CCGCAATCAAAGGAAAACACG 58.949 47.619 0.00 0.00 0.00 4.49
885 1628 2.050691 CGCAATCAAAGGAAAACACGG 58.949 47.619 0.00 0.00 0.00 4.94
886 1629 2.287308 CGCAATCAAAGGAAAACACGGA 60.287 45.455 0.00 0.00 0.00 4.69
887 1630 3.049912 GCAATCAAAGGAAAACACGGAC 58.950 45.455 0.00 0.00 0.00 4.79
888 1631 3.296628 CAATCAAAGGAAAACACGGACG 58.703 45.455 0.00 0.00 0.00 4.79
889 1632 2.312722 TCAAAGGAAAACACGGACGA 57.687 45.000 0.00 0.00 0.00 4.20
890 1633 2.206750 TCAAAGGAAAACACGGACGAG 58.793 47.619 0.00 0.00 0.00 4.18
891 1634 1.263217 CAAAGGAAAACACGGACGAGG 59.737 52.381 0.00 0.00 0.00 4.63
892 1635 0.466963 AAGGAAAACACGGACGAGGT 59.533 50.000 0.00 0.00 0.00 3.85
893 1636 0.033090 AGGAAAACACGGACGAGGTC 59.967 55.000 0.00 0.00 0.00 3.85
894 1637 0.033090 GGAAAACACGGACGAGGTCT 59.967 55.000 0.00 0.00 32.47 3.85
895 1638 1.539712 GGAAAACACGGACGAGGTCTT 60.540 52.381 0.00 0.00 32.47 3.01
896 1639 1.791204 GAAAACACGGACGAGGTCTTC 59.209 52.381 0.00 0.00 32.47 2.87
897 1640 0.748450 AAACACGGACGAGGTCTTCA 59.252 50.000 0.00 0.00 32.47 3.02
898 1641 0.966920 AACACGGACGAGGTCTTCAT 59.033 50.000 0.00 0.00 32.47 2.57
899 1642 0.526662 ACACGGACGAGGTCTTCATC 59.473 55.000 0.00 0.00 32.47 2.92
900 1643 0.179134 CACGGACGAGGTCTTCATCC 60.179 60.000 0.00 0.00 32.47 3.51
901 1644 0.611062 ACGGACGAGGTCTTCATCCA 60.611 55.000 0.00 0.00 32.47 3.41
902 1645 0.530744 CGGACGAGGTCTTCATCCAA 59.469 55.000 0.00 0.00 32.47 3.53
903 1646 1.736032 CGGACGAGGTCTTCATCCAAC 60.736 57.143 0.00 0.00 32.47 3.77
904 1647 1.550976 GGACGAGGTCTTCATCCAACT 59.449 52.381 0.00 0.00 32.47 3.16
905 1648 2.611518 GACGAGGTCTTCATCCAACTG 58.388 52.381 0.00 0.00 0.00 3.16
906 1649 2.231478 GACGAGGTCTTCATCCAACTGA 59.769 50.000 0.00 0.00 0.00 3.41
907 1650 2.028930 ACGAGGTCTTCATCCAACTGAC 60.029 50.000 0.00 0.00 0.00 3.51
908 1651 2.029020 CGAGGTCTTCATCCAACTGACA 60.029 50.000 0.00 0.00 0.00 3.58
909 1652 3.594134 GAGGTCTTCATCCAACTGACAG 58.406 50.000 0.00 0.00 0.00 3.51
910 1653 2.079925 GGTCTTCATCCAACTGACAGC 58.920 52.381 1.25 0.00 0.00 4.40
911 1654 1.728971 GTCTTCATCCAACTGACAGCG 59.271 52.381 1.25 0.00 0.00 5.18
912 1655 1.618343 TCTTCATCCAACTGACAGCGA 59.382 47.619 1.25 0.00 0.00 4.93
913 1656 1.728971 CTTCATCCAACTGACAGCGAC 59.271 52.381 1.25 0.00 0.00 5.19
914 1657 0.969149 TCATCCAACTGACAGCGACT 59.031 50.000 1.25 0.00 0.00 4.18
915 1658 1.067565 TCATCCAACTGACAGCGACTC 60.068 52.381 1.25 0.00 0.00 3.36
916 1659 0.109086 ATCCAACTGACAGCGACTCG 60.109 55.000 1.25 0.00 0.00 4.18
917 1660 1.734477 CCAACTGACAGCGACTCGG 60.734 63.158 1.25 0.00 0.00 4.63
918 1661 1.285950 CAACTGACAGCGACTCGGA 59.714 57.895 1.25 0.00 0.00 4.55
919 1662 1.004277 CAACTGACAGCGACTCGGAC 61.004 60.000 1.25 0.00 0.00 4.79
920 1663 1.173444 AACTGACAGCGACTCGGACT 61.173 55.000 1.25 0.00 0.00 3.85
921 1664 1.173444 ACTGACAGCGACTCGGACTT 61.173 55.000 1.25 0.00 0.00 3.01
922 1665 0.730834 CTGACAGCGACTCGGACTTG 60.731 60.000 0.00 0.00 0.00 3.16
923 1666 1.444553 GACAGCGACTCGGACTTGG 60.445 63.158 0.00 0.00 0.00 3.61
924 1667 2.125912 CAGCGACTCGGACTTGGG 60.126 66.667 0.00 0.00 0.00 4.12
925 1668 4.070552 AGCGACTCGGACTTGGGC 62.071 66.667 0.00 0.00 0.00 5.36
926 1669 4.070552 GCGACTCGGACTTGGGCT 62.071 66.667 0.00 0.00 0.00 5.19
927 1670 2.125912 CGACTCGGACTTGGGCTG 60.126 66.667 0.00 0.00 0.00 4.85
928 1671 2.435059 GACTCGGACTTGGGCTGC 60.435 66.667 0.00 0.00 0.00 5.25
929 1672 3.240134 GACTCGGACTTGGGCTGCA 62.240 63.158 0.50 0.00 0.00 4.41
930 1673 2.032528 CTCGGACTTGGGCTGCAA 59.967 61.111 0.50 0.00 0.00 4.08
931 1674 1.377725 CTCGGACTTGGGCTGCAAT 60.378 57.895 0.50 0.00 0.00 3.56
932 1675 1.372087 CTCGGACTTGGGCTGCAATC 61.372 60.000 0.50 0.00 0.00 2.67
933 1676 1.377725 CGGACTTGGGCTGCAATCT 60.378 57.895 0.50 0.00 0.00 2.40
934 1677 1.372087 CGGACTTGGGCTGCAATCTC 61.372 60.000 0.50 0.00 0.00 2.75
935 1678 0.034670 GGACTTGGGCTGCAATCTCT 60.035 55.000 0.50 0.00 0.00 3.10
936 1679 1.093159 GACTTGGGCTGCAATCTCTG 58.907 55.000 0.50 0.00 0.00 3.35
945 1688 2.105124 GCAATCTCTGCCTCCAAGC 58.895 57.895 0.00 0.00 46.13 4.01
946 1689 1.382692 GCAATCTCTGCCTCCAAGCC 61.383 60.000 0.00 0.00 46.13 4.35
947 1690 0.034767 CAATCTCTGCCTCCAAGCCA 60.035 55.000 0.00 0.00 0.00 4.75
948 1691 0.034670 AATCTCTGCCTCCAAGCCAC 60.035 55.000 0.00 0.00 0.00 5.01
949 1692 1.919600 ATCTCTGCCTCCAAGCCACC 61.920 60.000 0.00 0.00 0.00 4.61
950 1693 3.965539 CTCTGCCTCCAAGCCACCG 62.966 68.421 0.00 0.00 0.00 4.94
954 1697 4.659172 CCTCCAAGCCACCGCCAA 62.659 66.667 0.00 0.00 34.57 4.52
955 1698 3.058160 CTCCAAGCCACCGCCAAG 61.058 66.667 0.00 0.00 34.57 3.61
956 1699 3.850098 CTCCAAGCCACCGCCAAGT 62.850 63.158 0.00 0.00 34.57 3.16
957 1700 3.365265 CCAAGCCACCGCCAAGTC 61.365 66.667 0.00 0.00 34.57 3.01
958 1701 2.594303 CAAGCCACCGCCAAGTCA 60.594 61.111 0.00 0.00 34.57 3.41
959 1702 2.594592 AAGCCACCGCCAAGTCAC 60.595 61.111 0.00 0.00 34.57 3.67
960 1703 4.643387 AGCCACCGCCAAGTCACC 62.643 66.667 0.00 0.00 34.57 4.02
961 1704 4.643387 GCCACCGCCAAGTCACCT 62.643 66.667 0.00 0.00 0.00 4.00
962 1705 2.358737 CCACCGCCAAGTCACCTC 60.359 66.667 0.00 0.00 0.00 3.85
963 1706 2.358737 CACCGCCAAGTCACCTCC 60.359 66.667 0.00 0.00 0.00 4.30
964 1707 4.003788 ACCGCCAAGTCACCTCCG 62.004 66.667 0.00 0.00 0.00 4.63
965 1708 3.691342 CCGCCAAGTCACCTCCGA 61.691 66.667 0.00 0.00 0.00 4.55
966 1709 2.579201 CGCCAAGTCACCTCCGAT 59.421 61.111 0.00 0.00 0.00 4.18
969 1712 0.036388 GCCAAGTCACCTCCGATGAA 60.036 55.000 0.00 0.00 0.00 2.57
972 1715 2.496070 CCAAGTCACCTCCGATGAACTA 59.504 50.000 0.00 0.00 0.00 2.24
976 1719 1.006758 TCACCTCCGATGAACTACCCT 59.993 52.381 0.00 0.00 0.00 4.34
984 1727 0.981183 ATGAACTACCCTCCAACGCA 59.019 50.000 0.00 0.00 0.00 5.24
1059 1802 2.035449 CCCGAATATCGTGAAGCACCTA 59.965 50.000 0.00 0.00 38.40 3.08
1071 1814 1.450312 GCACCTAACGAGCCTGCAT 60.450 57.895 0.00 0.00 0.00 3.96
1080 1823 1.271054 ACGAGCCTGCATGACTTCTTT 60.271 47.619 0.00 0.00 0.00 2.52
1164 1907 2.663075 CCAGCTGCTGCACCTCCTA 61.663 63.158 23.86 0.00 42.74 2.94
1214 1957 1.181786 CTCTTCAAGGTCCTCGAGCT 58.818 55.000 6.99 0.00 42.52 4.09
1221 1964 3.444805 GTCCTCGAGCTCGGCTGT 61.445 66.667 33.98 0.00 39.88 4.40
1306 2049 2.046314 CATTCGCCAGGACCGGTT 60.046 61.111 9.42 0.00 0.00 4.44
1376 2119 3.917760 CCACCGGCGAGATCCTCC 61.918 72.222 9.30 0.00 0.00 4.30
1400 2143 1.032657 CGATCTCCTCTCCGGTGTGT 61.033 60.000 0.00 0.00 0.00 3.72
1434 2177 3.480133 GCCCCCGCTGGAGTACAT 61.480 66.667 0.00 0.00 35.39 2.29
1450 2193 1.126488 ACATCCGCATCATCCTCAGT 58.874 50.000 0.00 0.00 0.00 3.41
1453 2196 0.977627 TCCGCATCATCCTCAGTGGT 60.978 55.000 0.00 0.00 37.07 4.16
1465 2208 1.000955 CTCAGTGGTGGCTACGTCTTT 59.999 52.381 0.00 0.00 0.00 2.52
1471 2214 2.221299 TGGCTACGTCTTTGCCCCT 61.221 57.895 15.75 0.00 45.56 4.79
1507 2250 2.311463 GAGATCCAGTACTGCAGCCTA 58.689 52.381 17.86 0.00 0.00 3.93
1517 2260 2.661866 GCAGCCTATGGTACGCCG 60.662 66.667 0.00 0.00 37.67 6.46
1518 2261 2.812499 CAGCCTATGGTACGCCGT 59.188 61.111 0.00 0.00 37.67 5.68
1519 2262 2.035421 CAGCCTATGGTACGCCGTA 58.965 57.895 0.00 0.00 37.67 4.02
1520 2263 0.601558 CAGCCTATGGTACGCCGTAT 59.398 55.000 0.00 0.00 35.82 3.06
1521 2264 0.601558 AGCCTATGGTACGCCGTATG 59.398 55.000 0.00 0.00 35.82 2.39
1522 2265 0.389426 GCCTATGGTACGCCGTATGG 60.389 60.000 0.00 0.00 35.82 2.74
1580 2323 1.973281 CCAGGACTGGCGCATTGTT 60.973 57.895 10.83 0.00 44.73 2.83
1583 2326 1.745087 CAGGACTGGCGCATTGTTAAT 59.255 47.619 10.83 0.00 0.00 1.40
1675 2418 2.362889 GTGGATGCTTGGGGGTGG 60.363 66.667 0.00 0.00 0.00 4.61
1683 2426 1.682849 CTTGGGGGTGGATTCGACA 59.317 57.895 1.13 0.00 0.00 4.35
1731 2474 0.249447 CGTAGGCGGATCATTGCTGA 60.249 55.000 0.00 0.00 35.41 4.26
1763 2506 2.053618 CGAGCCCCTCCTTATCTGG 58.946 63.158 0.00 0.00 0.00 3.86
1769 2512 2.696158 GCCCCTCCTTATCTGGAAGGTA 60.696 54.545 2.29 0.00 45.47 3.08
1783 2526 1.115930 AAGGTAGGGCGCATCGATCT 61.116 55.000 10.83 0.00 0.00 2.75
1800 2543 7.041508 GCATCGATCTGGAATACAAGATTTTCT 60.042 37.037 0.00 0.00 0.00 2.52
1941 2684 4.183865 CGACTGTGTGTATGGATCATTGT 58.816 43.478 0.00 0.00 0.00 2.71
1943 2686 4.517285 ACTGTGTGTATGGATCATTGTCC 58.483 43.478 0.00 0.00 38.81 4.02
2013 2756 1.340017 GCTTCCCTGCACAGTATCCAA 60.340 52.381 0.00 0.00 0.00 3.53
2110 2853 0.527565 GAATCATGCACCAAGCCGTT 59.472 50.000 0.00 0.00 44.83 4.44
2137 2880 0.524816 CGGTCCGGTCTACATCAACG 60.525 60.000 2.34 0.00 0.00 4.10
2140 2883 0.108992 TCCGGTCTACATCAACGTGC 60.109 55.000 0.00 0.00 0.00 5.34
2143 2886 1.803334 GGTCTACATCAACGTGCCAA 58.197 50.000 0.00 0.00 0.00 4.52
2167 2910 0.876777 CTTACAACACGCCGTGGACA 60.877 55.000 22.60 0.39 37.94 4.02
2179 2922 2.915659 TGGACAACTCGCCCGTCT 60.916 61.111 0.00 0.00 0.00 4.18
2189 2932 4.803426 GCCCGTCTGCCTCTCACG 62.803 72.222 0.00 0.00 0.00 4.35
2200 2943 1.300620 CTCTCACGGCCGTTTCACA 60.301 57.895 32.11 10.10 0.00 3.58
2210 2953 2.667318 CGTTTCACATGTCCGCGCT 61.667 57.895 5.56 0.00 0.00 5.92
2241 2984 4.057428 GTGGCCGACTCGCTGTCT 62.057 66.667 0.00 0.00 43.25 3.41
2267 3010 3.343463 CTTACAAACGTCGCGGCCG 62.343 63.158 24.05 24.05 0.00 6.13
2279 3022 4.530857 CGGCCGACTCACCCATCC 62.531 72.222 24.07 0.00 0.00 3.51
2284 3027 2.982130 GACTCACCCATCCGCACT 59.018 61.111 0.00 0.00 0.00 4.40
2294 3037 0.802494 CATCCGCACTGGTTTACCAC 59.198 55.000 0.00 0.00 42.01 4.16
2297 3040 2.248135 CGCACTGGTTTACCACGCA 61.248 57.895 15.23 0.00 42.01 5.24
2298 3041 1.777030 CGCACTGGTTTACCACGCAA 61.777 55.000 15.23 0.00 42.01 4.85
2321 3064 2.264794 GGTTCACCCGTGAGCGAT 59.735 61.111 5.73 0.00 41.00 4.58
2365 3108 7.147312 TCATCAATTTCATGGCGGATTATTTC 58.853 34.615 0.00 0.00 0.00 2.17
2366 3109 6.713762 TCAATTTCATGGCGGATTATTTCT 57.286 33.333 0.00 0.00 0.00 2.52
2391 3134 0.035317 GGCGCATCAGGTGATATCCA 59.965 55.000 10.83 0.00 32.63 3.41
2393 3136 2.005451 GCGCATCAGGTGATATCCATC 58.995 52.381 0.30 0.00 32.63 3.51
2397 3140 4.867047 CGCATCAGGTGATATCCATCTAAC 59.133 45.833 0.00 0.00 33.61 2.34
2475 3218 3.181498 TGGTCTGCAATATTGTTGATGCG 60.181 43.478 16.61 0.00 41.61 4.73
2500 3243 6.640907 GGGACAATTGTTCACTACATCAAAAC 59.359 38.462 18.62 0.00 36.44 2.43
2507 3250 3.967401 TCACTACATCAAAACGACGTGA 58.033 40.909 0.00 0.00 0.00 4.35
2515 3258 5.464057 ACATCAAAACGACGTGATTAACTCA 59.536 36.000 0.00 0.00 32.06 3.41
2525 3268 2.905075 TGATTAACTCACCCATCTGCG 58.095 47.619 0.00 0.00 0.00 5.18
2584 3327 2.682856 GTCATACGTGGCCATTCACAAT 59.317 45.455 9.72 0.00 37.50 2.71
2593 3336 1.305219 CCATTCACAATCCGCCACGT 61.305 55.000 0.00 0.00 0.00 4.49
2634 3377 6.456853 CGTGGATTCACATCACGTTATCAAAT 60.457 38.462 4.68 0.00 43.79 2.32
2647 3390 7.387673 TCACGTTATCAAATGCCAAGGATATAG 59.612 37.037 0.00 0.00 0.00 1.31
2667 3410 2.926200 AGAATGAGTGTTGCGAAGATCG 59.074 45.455 0.00 0.00 43.89 3.69
2700 3443 3.068590 ACCTTGCTTCCAACTTCAACATG 59.931 43.478 0.00 0.00 0.00 3.21
2705 3448 3.849645 GCTTCCAACTTCAACATGTGACG 60.850 47.826 0.00 0.00 35.39 4.35
2762 3505 6.769134 TCACGACCAAGTATGAAGAATCTA 57.231 37.500 0.00 0.00 0.00 1.98
2765 3508 8.258007 TCACGACCAAGTATGAAGAATCTAAAT 58.742 33.333 0.00 0.00 0.00 1.40
2779 3522 1.485066 TCTAAATCCAACTCCCCGAGC 59.515 52.381 0.00 0.00 32.04 5.03
2790 3533 0.396695 TCCCCGAGCCGTCTTAAGAT 60.397 55.000 8.75 0.00 0.00 2.40
2815 3558 2.289945 GGGGCTATGATGACATGACTCC 60.290 54.545 0.00 0.00 37.87 3.85
2864 3607 1.229529 AACCCCAGGACGATGGAGT 60.230 57.895 7.50 0.00 43.57 3.85
2874 3617 5.453903 CCAGGACGATGGAGTGAAAGATAAT 60.454 44.000 0.00 0.00 43.57 1.28
2877 3620 5.221541 GGACGATGGAGTGAAAGATAATCCT 60.222 44.000 0.00 0.00 33.64 3.24
2908 3651 7.108847 GGAGGCTACTGCTATATTGATGAAAT 58.891 38.462 0.00 0.00 39.59 2.17
2909 3652 8.260818 GGAGGCTACTGCTATATTGATGAAATA 58.739 37.037 0.00 0.00 39.59 1.40
2958 3714 8.470002 GGCTCAAAAAGTATATGACAAAATCCT 58.530 33.333 0.00 0.00 0.00 3.24
3055 3824 3.587403 AAAACGTTGAAGCTCTCGAAC 57.413 42.857 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.535444 TTGAGAGGGGTTGAGCGGA 60.535 57.895 0.00 0.00 0.00 5.54
2 3 1.743252 GCTTGAGAGGGGTTGAGCG 60.743 63.158 0.00 0.00 0.00 5.03
3 4 0.905357 TAGCTTGAGAGGGGTTGAGC 59.095 55.000 0.00 0.00 0.00 4.26
5 6 1.276622 GGTAGCTTGAGAGGGGTTGA 58.723 55.000 0.00 0.00 0.00 3.18
6 7 0.984230 TGGTAGCTTGAGAGGGGTTG 59.016 55.000 0.00 0.00 0.00 3.77
7 8 0.984995 GTGGTAGCTTGAGAGGGGTT 59.015 55.000 0.00 0.00 0.00 4.11
8 9 0.178903 TGTGGTAGCTTGAGAGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
9 10 1.207791 ATGTGGTAGCTTGAGAGGGG 58.792 55.000 0.00 0.00 0.00 4.79
10 11 3.300388 TCTATGTGGTAGCTTGAGAGGG 58.700 50.000 0.00 0.00 0.00 4.30
11 12 4.798924 GCATCTATGTGGTAGCTTGAGAGG 60.799 50.000 0.00 0.00 0.00 3.69
12 13 4.202192 TGCATCTATGTGGTAGCTTGAGAG 60.202 45.833 0.00 0.00 0.00 3.20
13 14 3.706086 TGCATCTATGTGGTAGCTTGAGA 59.294 43.478 0.00 0.00 0.00 3.27
14 15 3.806521 GTGCATCTATGTGGTAGCTTGAG 59.193 47.826 0.00 0.00 0.00 3.02
15 16 3.737972 CGTGCATCTATGTGGTAGCTTGA 60.738 47.826 0.00 0.00 0.00 3.02
16 17 2.541346 CGTGCATCTATGTGGTAGCTTG 59.459 50.000 0.00 0.00 0.00 4.01
17 18 2.826428 CGTGCATCTATGTGGTAGCTT 58.174 47.619 0.00 0.00 0.00 3.74
18 19 1.539065 GCGTGCATCTATGTGGTAGCT 60.539 52.381 0.00 0.00 0.00 3.32
19 20 0.861837 GCGTGCATCTATGTGGTAGC 59.138 55.000 0.00 0.00 0.00 3.58
20 21 1.131771 CGCGTGCATCTATGTGGTAG 58.868 55.000 0.00 0.00 0.00 3.18
21 22 0.874175 GCGCGTGCATCTATGTGGTA 60.874 55.000 17.66 0.00 42.15 3.25
22 23 2.173669 GCGCGTGCATCTATGTGGT 61.174 57.895 17.66 0.00 42.15 4.16
23 24 2.628106 GCGCGTGCATCTATGTGG 59.372 61.111 17.66 0.00 42.15 4.17
24 25 2.628106 GGCGCGTGCATCTATGTG 59.372 61.111 24.18 0.00 45.35 3.21
25 26 2.961721 CGGCGCGTGCATCTATGT 60.962 61.111 24.18 0.00 45.35 2.29
26 27 2.961721 ACGGCGCGTGCATCTATG 60.962 61.111 24.18 7.11 45.35 2.23
58 59 4.471025 TGGCTCCATCAAAGACTATCTCAA 59.529 41.667 0.00 0.00 0.00 3.02
73 74 6.684613 GCAAACATTGAATATTCTGGCTCCAT 60.685 38.462 16.24 0.00 0.00 3.41
81 82 7.558161 TCTGATCGCAAACATTGAATATTCT 57.442 32.000 16.24 0.00 0.00 2.40
143 144 3.213206 TCCCTCAGCGATGCATAAAAT 57.787 42.857 0.00 0.00 0.00 1.82
172 173 7.129457 ACTGATCTCATATTTAGCCTCAACA 57.871 36.000 0.00 0.00 0.00 3.33
242 248 1.336517 GCAGTGTACAACAGCTACCGA 60.337 52.381 0.00 0.00 38.23 4.69
258 264 2.223829 CCTTCTCGGATTGATACGCAGT 60.224 50.000 0.00 0.00 39.24 4.40
329 349 7.555554 CAGTTTGGAAACATATGATTCCTCTCT 59.444 37.037 32.61 25.35 44.42 3.10
331 351 7.177878 ACAGTTTGGAAACATATGATTCCTCT 58.822 34.615 32.61 25.84 44.42 3.69
332 352 7.396540 ACAGTTTGGAAACATATGATTCCTC 57.603 36.000 32.61 24.63 44.42 3.71
333 353 7.362056 CGAACAGTTTGGAAACATATGATTCCT 60.362 37.037 32.61 18.42 44.42 3.36
334 354 6.747280 CGAACAGTTTGGAAACATATGATTCC 59.253 38.462 28.89 28.89 44.39 3.01
335 355 7.526608 TCGAACAGTTTGGAAACATATGATTC 58.473 34.615 15.40 15.40 42.32 2.52
337 357 6.878923 TCTCGAACAGTTTGGAAACATATGAT 59.121 34.615 10.38 0.00 42.32 2.45
399 776 8.754991 TTTTATGAAAAGTCCTGGTCTTGTAA 57.245 30.769 6.96 0.00 0.00 2.41
504 1245 2.780924 AAACTCCCTGGGGTGGCA 60.781 61.111 14.00 0.00 36.47 4.92
508 1249 2.109480 GTTTAAGGAAACTCCCTGGGGT 59.891 50.000 14.00 6.98 42.68 4.95
513 1254 1.271762 GGCGGTTTAAGGAAACTCCCT 60.272 52.381 1.00 0.00 43.83 4.20
567 1309 1.078426 GTAGCATGGTGAACCGGCT 60.078 57.895 18.69 18.69 46.49 5.52
616 1359 1.153086 GGCGGATGAAGAGGTGCAT 60.153 57.895 0.00 0.00 0.00 3.96
661 1404 2.280592 GACTGTTCAACCGGCGGT 60.281 61.111 28.83 28.83 37.65 5.68
705 1448 2.534396 ATGGGTTTGTCCTCGGCCA 61.534 57.895 2.24 0.00 36.25 5.36
706 1449 2.046285 CATGGGTTTGTCCTCGGCC 61.046 63.158 0.00 0.00 36.25 6.13
711 1454 0.610232 GCAGCTCATGGGTTTGTCCT 60.610 55.000 0.00 0.00 36.25 3.85
712 1455 1.598701 GGCAGCTCATGGGTTTGTCC 61.599 60.000 0.00 0.00 0.00 4.02
713 1456 0.895100 TGGCAGCTCATGGGTTTGTC 60.895 55.000 0.00 0.00 0.00 3.18
714 1457 1.153524 TGGCAGCTCATGGGTTTGT 59.846 52.632 0.00 0.00 0.00 2.83
715 1458 1.588082 GTGGCAGCTCATGGGTTTG 59.412 57.895 0.00 0.00 0.00 2.93
716 1459 1.607467 GGTGGCAGCTCATGGGTTT 60.607 57.895 9.90 0.00 0.00 3.27
717 1460 2.036256 GGTGGCAGCTCATGGGTT 59.964 61.111 9.90 0.00 0.00 4.11
718 1461 4.415150 CGGTGGCAGCTCATGGGT 62.415 66.667 15.48 0.00 0.00 4.51
719 1462 4.415150 ACGGTGGCAGCTCATGGG 62.415 66.667 15.48 0.09 0.00 4.00
720 1463 2.821366 GACGGTGGCAGCTCATGG 60.821 66.667 15.48 0.86 0.00 3.66
721 1464 3.190849 CGACGGTGGCAGCTCATG 61.191 66.667 15.48 1.25 0.00 3.07
722 1465 3.362399 CTCGACGGTGGCAGCTCAT 62.362 63.158 15.48 0.00 0.00 2.90
723 1466 4.056125 CTCGACGGTGGCAGCTCA 62.056 66.667 15.48 2.67 0.00 4.26
738 1481 2.394563 GCTTGAAGGCGAGGTGCTC 61.395 63.158 0.00 0.00 45.43 4.26
739 1482 2.359230 GCTTGAAGGCGAGGTGCT 60.359 61.111 0.00 0.00 45.43 4.40
740 1483 2.359230 AGCTTGAAGGCGAGGTGC 60.359 61.111 0.00 0.00 45.38 5.01
741 1484 3.571119 CAGCTTGAAGGCGAGGTG 58.429 61.111 0.00 0.00 44.85 4.00
742 1485 1.754745 TTCAGCTTGAAGGCGAGGT 59.245 52.632 0.00 0.00 36.70 3.85
743 1486 4.701663 TTCAGCTTGAAGGCGAGG 57.298 55.556 0.00 0.00 37.29 4.63
750 1493 0.987294 AGGCTAGGCTTCAGCTTGAA 59.013 50.000 14.10 0.00 41.70 2.69
751 1494 0.539051 GAGGCTAGGCTTCAGCTTGA 59.461 55.000 21.21 0.00 41.70 3.02
752 1495 0.463474 GGAGGCTAGGCTTCAGCTTG 60.463 60.000 21.21 0.00 41.70 4.01
753 1496 0.620121 AGGAGGCTAGGCTTCAGCTT 60.620 55.000 25.52 4.50 41.70 3.74
754 1497 1.002792 AGGAGGCTAGGCTTCAGCT 59.997 57.895 25.52 3.09 41.70 4.24
755 1498 1.445518 GAGGAGGCTAGGCTTCAGC 59.554 63.158 25.52 13.64 36.34 4.26
756 1499 0.689080 TGGAGGAGGCTAGGCTTCAG 60.689 60.000 25.52 0.00 36.34 3.02
757 1500 0.252696 TTGGAGGAGGCTAGGCTTCA 60.253 55.000 25.52 15.65 36.34 3.02
758 1501 0.912486 TTTGGAGGAGGCTAGGCTTC 59.088 55.000 21.21 19.04 33.80 3.86
759 1502 1.004862 GTTTTGGAGGAGGCTAGGCTT 59.995 52.381 21.21 5.06 0.00 4.35
760 1503 0.621082 GTTTTGGAGGAGGCTAGGCT 59.379 55.000 20.36 20.36 0.00 4.58
761 1504 0.394488 GGTTTTGGAGGAGGCTAGGC 60.394 60.000 8.55 8.55 0.00 3.93
762 1505 0.991920 TGGTTTTGGAGGAGGCTAGG 59.008 55.000 0.00 0.00 0.00 3.02
763 1506 1.340114 GGTGGTTTTGGAGGAGGCTAG 60.340 57.143 0.00 0.00 0.00 3.42
764 1507 0.696501 GGTGGTTTTGGAGGAGGCTA 59.303 55.000 0.00 0.00 0.00 3.93
765 1508 1.460699 GGTGGTTTTGGAGGAGGCT 59.539 57.895 0.00 0.00 0.00 4.58
766 1509 1.971695 CGGTGGTTTTGGAGGAGGC 60.972 63.158 0.00 0.00 0.00 4.70
767 1510 0.605589 GACGGTGGTTTTGGAGGAGG 60.606 60.000 0.00 0.00 0.00 4.30
768 1511 0.949105 CGACGGTGGTTTTGGAGGAG 60.949 60.000 0.00 0.00 0.00 3.69
769 1512 1.070105 CGACGGTGGTTTTGGAGGA 59.930 57.895 0.00 0.00 0.00 3.71
770 1513 2.613506 GCGACGGTGGTTTTGGAGG 61.614 63.158 0.00 0.00 0.00 4.30
771 1514 2.943653 GCGACGGTGGTTTTGGAG 59.056 61.111 0.00 0.00 0.00 3.86
772 1515 2.968156 CGCGACGGTGGTTTTGGA 60.968 61.111 0.00 0.00 0.00 3.53
773 1516 4.676586 GCGCGACGGTGGTTTTGG 62.677 66.667 12.10 0.00 0.00 3.28
774 1517 4.676586 GGCGCGACGGTGGTTTTG 62.677 66.667 12.10 0.00 0.00 2.44
789 1532 3.540367 TTGGAGGAAACGACCGGGC 62.540 63.158 6.32 0.00 35.10 6.13
790 1533 1.375523 CTTGGAGGAAACGACCGGG 60.376 63.158 6.32 0.00 35.10 5.73
791 1534 2.033194 GCTTGGAGGAAACGACCGG 61.033 63.158 0.00 0.00 35.10 5.28
792 1535 0.602905 AAGCTTGGAGGAAACGACCG 60.603 55.000 0.00 0.00 35.10 4.79
793 1536 0.875059 CAAGCTTGGAGGAAACGACC 59.125 55.000 19.14 0.00 0.00 4.79
805 1548 3.307089 ATGGAGGGGGCCAAGCTTG 62.307 63.158 19.93 19.93 42.16 4.01
806 1549 2.948924 ATGGAGGGGGCCAAGCTT 60.949 61.111 4.39 0.00 42.16 3.74
807 1550 3.424105 GATGGAGGGGGCCAAGCT 61.424 66.667 4.39 0.00 42.16 3.74
808 1551 4.529731 GGATGGAGGGGGCCAAGC 62.530 72.222 4.39 0.00 42.16 4.01
809 1552 3.023116 TGGATGGAGGGGGCCAAG 61.023 66.667 4.39 0.00 42.16 3.61
810 1553 3.346734 GTGGATGGAGGGGGCCAA 61.347 66.667 4.39 0.00 42.16 4.52
813 1556 3.728373 AACGTGGATGGAGGGGGC 61.728 66.667 0.00 0.00 0.00 5.80
814 1557 2.272146 CAACGTGGATGGAGGGGG 59.728 66.667 0.00 0.00 0.00 5.40
815 1558 2.438434 GCAACGTGGATGGAGGGG 60.438 66.667 0.00 0.00 0.00 4.79
816 1559 2.438434 GGCAACGTGGATGGAGGG 60.438 66.667 0.00 0.00 0.00 4.30
839 1582 3.300667 CTTGAGGCGCGCTGTTGAC 62.301 63.158 32.29 13.29 0.00 3.18
840 1583 3.043713 CTTGAGGCGCGCTGTTGA 61.044 61.111 32.29 12.44 0.00 3.18
841 1584 4.748679 GCTTGAGGCGCGCTGTTG 62.749 66.667 32.29 17.76 0.00 3.33
860 1603 3.049912 GTTTTCCTTTGATTGCGGTGAC 58.950 45.455 0.00 0.00 0.00 3.67
861 1604 2.690497 TGTTTTCCTTTGATTGCGGTGA 59.310 40.909 0.00 0.00 0.00 4.02
862 1605 2.794350 GTGTTTTCCTTTGATTGCGGTG 59.206 45.455 0.00 0.00 0.00 4.94
863 1606 2.542824 CGTGTTTTCCTTTGATTGCGGT 60.543 45.455 0.00 0.00 0.00 5.68
864 1607 2.050691 CGTGTTTTCCTTTGATTGCGG 58.949 47.619 0.00 0.00 0.00 5.69
865 1608 2.050691 CCGTGTTTTCCTTTGATTGCG 58.949 47.619 0.00 0.00 0.00 4.85
866 1609 3.049912 GTCCGTGTTTTCCTTTGATTGC 58.950 45.455 0.00 0.00 0.00 3.56
867 1610 3.002862 TCGTCCGTGTTTTCCTTTGATTG 59.997 43.478 0.00 0.00 0.00 2.67
868 1611 3.207778 TCGTCCGTGTTTTCCTTTGATT 58.792 40.909 0.00 0.00 0.00 2.57
869 1612 2.806244 CTCGTCCGTGTTTTCCTTTGAT 59.194 45.455 0.00 0.00 0.00 2.57
870 1613 2.206750 CTCGTCCGTGTTTTCCTTTGA 58.793 47.619 0.00 0.00 0.00 2.69
871 1614 1.263217 CCTCGTCCGTGTTTTCCTTTG 59.737 52.381 0.00 0.00 0.00 2.77
872 1615 1.134310 ACCTCGTCCGTGTTTTCCTTT 60.134 47.619 0.00 0.00 0.00 3.11
873 1616 0.466963 ACCTCGTCCGTGTTTTCCTT 59.533 50.000 0.00 0.00 0.00 3.36
874 1617 0.033090 GACCTCGTCCGTGTTTTCCT 59.967 55.000 0.00 0.00 0.00 3.36
875 1618 0.033090 AGACCTCGTCCGTGTTTTCC 59.967 55.000 0.00 0.00 32.18 3.13
876 1619 1.791204 GAAGACCTCGTCCGTGTTTTC 59.209 52.381 0.00 0.00 32.18 2.29
877 1620 1.137479 TGAAGACCTCGTCCGTGTTTT 59.863 47.619 0.00 0.00 32.18 2.43
878 1621 0.748450 TGAAGACCTCGTCCGTGTTT 59.252 50.000 0.00 0.00 32.18 2.83
879 1622 0.966920 ATGAAGACCTCGTCCGTGTT 59.033 50.000 0.00 0.00 32.18 3.32
880 1623 0.526662 GATGAAGACCTCGTCCGTGT 59.473 55.000 0.00 0.00 34.41 4.49
881 1624 3.330766 GATGAAGACCTCGTCCGTG 57.669 57.895 0.00 0.00 34.41 4.94
885 1628 2.231478 TCAGTTGGATGAAGACCTCGTC 59.769 50.000 0.00 0.00 39.11 4.20
886 1629 2.028930 GTCAGTTGGATGAAGACCTCGT 60.029 50.000 0.00 0.00 0.00 4.18
887 1630 2.029020 TGTCAGTTGGATGAAGACCTCG 60.029 50.000 0.00 0.00 0.00 4.63
888 1631 3.594134 CTGTCAGTTGGATGAAGACCTC 58.406 50.000 0.00 0.00 0.00 3.85
889 1632 2.289945 GCTGTCAGTTGGATGAAGACCT 60.290 50.000 0.93 0.00 0.00 3.85
890 1633 2.079925 GCTGTCAGTTGGATGAAGACC 58.920 52.381 0.93 0.00 0.00 3.85
891 1634 1.728971 CGCTGTCAGTTGGATGAAGAC 59.271 52.381 0.93 0.00 0.00 3.01
892 1635 1.618343 TCGCTGTCAGTTGGATGAAGA 59.382 47.619 0.93 0.00 0.00 2.87
893 1636 1.728971 GTCGCTGTCAGTTGGATGAAG 59.271 52.381 0.93 0.00 0.00 3.02
894 1637 1.344438 AGTCGCTGTCAGTTGGATGAA 59.656 47.619 0.93 0.00 0.00 2.57
895 1638 0.969149 AGTCGCTGTCAGTTGGATGA 59.031 50.000 0.93 0.00 0.00 2.92
896 1639 1.354040 GAGTCGCTGTCAGTTGGATG 58.646 55.000 0.93 0.00 0.00 3.51
897 1640 0.109086 CGAGTCGCTGTCAGTTGGAT 60.109 55.000 0.00 0.00 0.00 3.41
898 1641 1.285950 CGAGTCGCTGTCAGTTGGA 59.714 57.895 0.00 0.00 0.00 3.53
899 1642 1.734477 CCGAGTCGCTGTCAGTTGG 60.734 63.158 7.12 0.00 0.00 3.77
900 1643 1.004277 GTCCGAGTCGCTGTCAGTTG 61.004 60.000 7.12 0.00 0.00 3.16
901 1644 1.173444 AGTCCGAGTCGCTGTCAGTT 61.173 55.000 7.12 0.00 0.00 3.16
902 1645 1.173444 AAGTCCGAGTCGCTGTCAGT 61.173 55.000 7.12 0.00 0.00 3.41
903 1646 0.730834 CAAGTCCGAGTCGCTGTCAG 60.731 60.000 7.12 0.00 0.00 3.51
904 1647 1.285950 CAAGTCCGAGTCGCTGTCA 59.714 57.895 7.12 0.00 0.00 3.58
905 1648 1.444553 CCAAGTCCGAGTCGCTGTC 60.445 63.158 7.12 0.00 0.00 3.51
906 1649 2.651361 CCAAGTCCGAGTCGCTGT 59.349 61.111 7.12 0.00 0.00 4.40
907 1650 2.125912 CCCAAGTCCGAGTCGCTG 60.126 66.667 7.12 1.25 0.00 5.18
908 1651 4.070552 GCCCAAGTCCGAGTCGCT 62.071 66.667 7.12 0.00 0.00 4.93
909 1652 4.070552 AGCCCAAGTCCGAGTCGC 62.071 66.667 7.12 0.00 0.00 5.19
910 1653 2.125912 CAGCCCAAGTCCGAGTCG 60.126 66.667 5.29 5.29 0.00 4.18
911 1654 2.435059 GCAGCCCAAGTCCGAGTC 60.435 66.667 0.00 0.00 0.00 3.36
912 1655 2.129555 ATTGCAGCCCAAGTCCGAGT 62.130 55.000 0.00 0.00 36.76 4.18
913 1656 1.372087 GATTGCAGCCCAAGTCCGAG 61.372 60.000 0.00 0.00 36.76 4.63
914 1657 1.377202 GATTGCAGCCCAAGTCCGA 60.377 57.895 0.00 0.00 36.76 4.55
915 1658 1.372087 GAGATTGCAGCCCAAGTCCG 61.372 60.000 0.00 0.00 36.76 4.79
916 1659 0.034670 AGAGATTGCAGCCCAAGTCC 60.035 55.000 0.00 0.00 36.76 3.85
917 1660 1.093159 CAGAGATTGCAGCCCAAGTC 58.907 55.000 0.00 0.00 36.76 3.01
918 1661 3.261250 CAGAGATTGCAGCCCAAGT 57.739 52.632 0.00 0.00 36.76 3.16
928 1671 0.034767 TGGCTTGGAGGCAGAGATTG 60.035 55.000 0.00 0.00 46.47 2.67
929 1672 2.391226 TGGCTTGGAGGCAGAGATT 58.609 52.632 0.00 0.00 46.47 2.40
930 1673 4.159099 TGGCTTGGAGGCAGAGAT 57.841 55.556 0.00 0.00 46.47 2.75
937 1680 4.659172 TTGGCGGTGGCTTGGAGG 62.659 66.667 0.00 0.00 39.81 4.30
938 1681 3.058160 CTTGGCGGTGGCTTGGAG 61.058 66.667 0.00 0.00 39.81 3.86
939 1682 3.842925 GACTTGGCGGTGGCTTGGA 62.843 63.158 0.00 0.00 39.81 3.53
940 1683 3.365265 GACTTGGCGGTGGCTTGG 61.365 66.667 0.00 0.00 39.81 3.61
941 1684 2.594303 TGACTTGGCGGTGGCTTG 60.594 61.111 0.00 0.00 39.81 4.01
942 1685 2.594592 GTGACTTGGCGGTGGCTT 60.595 61.111 0.00 0.00 39.81 4.35
943 1686 4.643387 GGTGACTTGGCGGTGGCT 62.643 66.667 0.00 0.00 39.81 4.75
944 1687 4.643387 AGGTGACTTGGCGGTGGC 62.643 66.667 0.00 0.00 37.44 5.01
945 1688 2.358737 GAGGTGACTTGGCGGTGG 60.359 66.667 0.00 0.00 44.43 4.61
946 1689 2.358737 GGAGGTGACTTGGCGGTG 60.359 66.667 0.00 0.00 44.43 4.94
947 1690 4.003788 CGGAGGTGACTTGGCGGT 62.004 66.667 0.00 0.00 44.43 5.68
948 1691 3.019003 ATCGGAGGTGACTTGGCGG 62.019 63.158 0.00 0.00 44.43 6.13
949 1692 1.811266 CATCGGAGGTGACTTGGCG 60.811 63.158 0.00 0.00 44.43 5.69
950 1693 0.036388 TTCATCGGAGGTGACTTGGC 60.036 55.000 0.00 0.00 44.43 4.52
951 1694 1.276421 AGTTCATCGGAGGTGACTTGG 59.724 52.381 0.00 0.00 44.43 3.61
952 1695 2.751166 AGTTCATCGGAGGTGACTTG 57.249 50.000 0.00 0.00 44.43 3.16
953 1696 2.496470 GGTAGTTCATCGGAGGTGACTT 59.504 50.000 6.72 0.00 44.43 3.01
955 1698 1.136500 GGGTAGTTCATCGGAGGTGAC 59.864 57.143 0.00 0.00 0.00 3.67
956 1699 1.006758 AGGGTAGTTCATCGGAGGTGA 59.993 52.381 0.00 0.00 0.00 4.02
957 1700 1.409427 GAGGGTAGTTCATCGGAGGTG 59.591 57.143 0.00 0.00 0.00 4.00
958 1701 1.688627 GGAGGGTAGTTCATCGGAGGT 60.689 57.143 0.00 0.00 0.00 3.85
959 1702 1.041437 GGAGGGTAGTTCATCGGAGG 58.959 60.000 0.00 0.00 0.00 4.30
960 1703 1.776662 TGGAGGGTAGTTCATCGGAG 58.223 55.000 0.00 0.00 0.00 4.63
961 1704 1.829222 GTTGGAGGGTAGTTCATCGGA 59.171 52.381 0.00 0.00 0.00 4.55
962 1705 1.470979 CGTTGGAGGGTAGTTCATCGG 60.471 57.143 0.00 0.00 0.00 4.18
963 1706 1.922570 CGTTGGAGGGTAGTTCATCG 58.077 55.000 0.00 0.00 0.00 3.84
964 1707 1.066430 TGCGTTGGAGGGTAGTTCATC 60.066 52.381 0.00 0.00 0.00 2.92
965 1708 0.981183 TGCGTTGGAGGGTAGTTCAT 59.019 50.000 0.00 0.00 0.00 2.57
966 1709 0.034337 GTGCGTTGGAGGGTAGTTCA 59.966 55.000 0.00 0.00 0.00 3.18
969 1712 2.590114 GGGTGCGTTGGAGGGTAGT 61.590 63.158 0.00 0.00 0.00 2.73
976 1719 3.687102 ATCGACGGGTGCGTTGGA 61.687 61.111 0.00 0.00 0.00 3.53
1042 1785 4.360563 CTCGTTAGGTGCTTCACGATATT 58.639 43.478 0.00 0.00 40.66 1.28
1044 1787 2.479049 GCTCGTTAGGTGCTTCACGATA 60.479 50.000 0.00 0.00 40.66 2.92
1059 1802 0.322975 AGAAGTCATGCAGGCTCGTT 59.677 50.000 0.00 0.00 0.00 3.85
1071 1814 1.302511 GCGGAGGGCAAAGAAGTCA 60.303 57.895 0.00 0.00 42.87 3.41
1124 1867 4.063967 CGAGCAGGTACCGGCACA 62.064 66.667 33.95 0.00 39.53 4.57
1290 2033 2.046314 CAACCGGTCCTGGCGAAT 60.046 61.111 8.04 0.00 0.00 3.34
1376 2119 1.169661 CCGGAGAGGAGATCGGTGAG 61.170 65.000 0.00 0.00 45.00 3.51
1434 2177 0.977627 ACCACTGAGGATGATGCGGA 60.978 55.000 0.00 0.00 41.22 5.54
1439 2182 1.765314 GTAGCCACCACTGAGGATGAT 59.235 52.381 0.00 0.00 41.22 2.45
1450 2193 4.371975 GCAAAGACGTAGCCACCA 57.628 55.556 0.00 0.00 0.00 4.17
1580 2323 3.134879 CCGTAGAGGGCGCCATTA 58.865 61.111 30.85 14.22 35.97 1.90
1675 2418 3.926616 TCTTCAAGGTCCTTGTCGAATC 58.073 45.455 27.29 0.00 41.66 2.52
1683 2426 3.850752 TCAGAGTCTCTTCAAGGTCCTT 58.149 45.455 0.00 0.00 0.00 3.36
1763 2506 0.667792 GATCGATGCGCCCTACCTTC 60.668 60.000 0.54 0.00 0.00 3.46
1769 2512 1.762522 ATTCCAGATCGATGCGCCCT 61.763 55.000 0.54 0.00 0.00 5.19
1783 2526 5.016173 CCCACCAGAAAATCTTGTATTCCA 58.984 41.667 0.00 0.00 0.00 3.53
1800 2543 0.112218 CCCACATTGAAGTCCCACCA 59.888 55.000 0.00 0.00 0.00 4.17
1825 2568 2.543861 CCTAGGATCGTTGTCATCACCG 60.544 54.545 1.05 0.00 0.00 4.94
1840 2583 3.892104 AACGTCCGCCCACCTAGGA 62.892 63.158 17.98 0.00 41.22 2.94
1941 2684 2.042762 CCATCCCCCACTCCAGGA 59.957 66.667 0.00 0.00 0.00 3.86
1943 2686 2.750657 GCTCCATCCCCCACTCCAG 61.751 68.421 0.00 0.00 0.00 3.86
2140 2883 1.572447 CGTGTTGTAAGCCGGTTGG 59.428 57.895 1.90 0.00 38.77 3.77
2143 2886 2.667199 GGCGTGTTGTAAGCCGGT 60.667 61.111 1.90 0.00 43.96 5.28
2152 2895 2.101209 GAGTTGTCCACGGCGTGTTG 62.101 60.000 34.74 22.39 0.00 3.33
2155 2898 3.403057 CGAGTTGTCCACGGCGTG 61.403 66.667 31.78 31.78 0.00 5.34
2162 2905 2.915659 AGACGGGCGAGTTGTCCA 60.916 61.111 0.96 0.00 45.31 4.02
2187 2930 1.964373 GGACATGTGAAACGGCCGT 60.964 57.895 28.70 28.70 42.39 5.68
2189 2932 2.867472 CGGACATGTGAAACGGCC 59.133 61.111 1.15 0.00 42.39 6.13
2194 2937 2.324330 CCAGCGCGGACATGTGAAA 61.324 57.895 9.80 0.00 36.56 2.69
2200 2943 2.511600 GTAAGCCAGCGCGGACAT 60.512 61.111 20.06 0.00 41.18 3.06
2237 2980 2.997952 TTTGTAAGCCGGCGCAGACA 62.998 55.000 23.20 19.98 37.52 3.41
2241 2984 3.718097 CGTTTGTAAGCCGGCGCA 61.718 61.111 23.20 18.65 37.52 6.09
2267 3010 1.448540 CAGTGCGGATGGGTGAGTC 60.449 63.158 0.00 0.00 0.00 3.36
2284 3027 2.544698 GCCGTTGCGTGGTAAACCA 61.545 57.895 0.00 0.00 45.30 3.67
2313 3056 2.808543 AGGTGAAGTTGAAATCGCTCAC 59.191 45.455 0.00 0.00 0.00 3.51
2318 3061 3.250744 TCGCTAGGTGAAGTTGAAATCG 58.749 45.455 0.00 0.00 0.00 3.34
2321 3064 4.265904 TGATCGCTAGGTGAAGTTGAAA 57.734 40.909 0.00 0.00 0.00 2.69
2475 3218 5.957842 TTGATGTAGTGAACAATTGTCCC 57.042 39.130 12.39 7.71 42.70 4.46
2507 3250 1.668419 GCGCAGATGGGTGAGTTAAT 58.332 50.000 0.30 0.00 0.00 1.40
2515 3258 4.344865 AAACCGGCGCAGATGGGT 62.345 61.111 10.83 5.02 0.00 4.51
2519 3262 2.983030 TTGCAAACCGGCGCAGAT 60.983 55.556 10.83 0.00 39.75 2.90
2563 3306 1.732941 TGTGAATGGCCACGTATGAC 58.267 50.000 8.16 0.00 39.80 3.06
2571 3314 2.051518 GGCGGATTGTGAATGGCCA 61.052 57.895 8.56 8.56 37.16 5.36
2593 3336 1.539496 CCACGAAAACTTGAGGTCGGA 60.539 52.381 0.00 0.00 37.81 4.55
2634 3377 5.894298 ACACTCATTCTATATCCTTGGCA 57.106 39.130 0.00 0.00 0.00 4.92
2647 3390 2.029728 CCGATCTTCGCAACACTCATTC 59.970 50.000 0.00 0.00 38.82 2.67
2667 3410 0.605589 AAGCAAGGTGGCGAGTTACC 60.606 55.000 0.00 0.00 39.27 2.85
2700 3443 2.683968 TGAATAGCAGAACACCGTCAC 58.316 47.619 0.00 0.00 0.00 3.67
2762 3505 1.303282 GGCTCGGGGAGTTGGATTT 59.697 57.895 0.00 0.00 31.39 2.17
2779 3522 0.532196 GCCCCCGAATCTTAAGACGG 60.532 60.000 21.73 21.73 44.16 4.79
2790 3533 1.072173 CATGTCATCATAGCCCCCGAA 59.928 52.381 0.00 0.00 32.47 4.30
2864 3607 3.380393 TCCGGGACAGGATTATCTTTCA 58.620 45.455 0.00 0.00 34.92 2.69
2874 3617 2.043248 GTAGCCTCCGGGACAGGA 60.043 66.667 11.81 0.00 38.80 3.86
2877 3620 2.219449 TAGCAGTAGCCTCCGGGACA 62.219 60.000 0.00 0.00 43.56 4.02
2908 3651 5.365619 GGAAATTCTCTGACGGCCTTTATA 58.634 41.667 0.00 0.00 0.00 0.98
2909 3652 4.200092 GGAAATTCTCTGACGGCCTTTAT 58.800 43.478 0.00 0.00 0.00 1.40
2958 3714 2.426522 CGGAACTTCTTCATTGAGCCA 58.573 47.619 0.00 0.00 0.00 4.75
3038 3806 2.329379 GATGTTCGAGAGCTTCAACGT 58.671 47.619 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.