Multiple sequence alignment - TraesCS7B01G270600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G270600 chr7B 100.000 6006 0 0 659 6664 496271680 496277685 0.000000e+00 11092.0
1 TraesCS7B01G270600 chr7B 100.000 278 0 0 1 278 496271022 496271299 1.280000e-141 514.0
2 TraesCS7B01G270600 chr7D 94.610 4434 171 27 1889 6295 472290246 472294638 0.000000e+00 6802.0
3 TraesCS7B01G270600 chr7D 93.496 1230 62 7 672 1890 472287513 472288735 0.000000e+00 1812.0
4 TraesCS7B01G270600 chr7D 94.643 168 7 2 28 194 472286857 472287023 6.630000e-65 259.0
5 TraesCS7B01G270600 chr7A 93.033 1866 102 16 4397 6242 523943784 523941927 0.000000e+00 2700.0
6 TraesCS7B01G270600 chr7A 90.124 1448 86 30 2992 4415 523945250 523943836 0.000000e+00 1829.0
7 TraesCS7B01G270600 chr7A 86.667 1275 112 36 659 1890 523949133 523947874 0.000000e+00 1360.0
8 TraesCS7B01G270600 chr7A 89.037 602 46 12 1889 2481 523946352 523945762 0.000000e+00 728.0
9 TraesCS7B01G270600 chr7A 82.393 443 43 16 2445 2866 523945758 523945330 2.960000e-93 353.0
10 TraesCS7B01G270600 chr7A 92.339 248 13 2 1 242 523949763 523949516 1.380000e-91 348.0
11 TraesCS7B01G270600 chr5A 92.727 55 3 1 6489 6542 534095299 534095353 1.990000e-10 78.7
12 TraesCS7B01G270600 chr4A 94.000 50 3 0 6577 6626 489058164 489058115 7.170000e-10 76.8
13 TraesCS7B01G270600 chr6D 94.000 50 2 1 6494 6542 22451198 22451247 2.580000e-09 75.0
14 TraesCS7B01G270600 chr2D 93.878 49 3 0 6578 6626 497441 497489 2.580000e-09 75.0
15 TraesCS7B01G270600 chr2D 95.000 40 2 0 3860 3899 387253026 387252987 5.580000e-06 63.9
16 TraesCS7B01G270600 chr3B 91.304 46 4 0 6581 6626 749670603 749670558 5.580000e-06 63.9
17 TraesCS7B01G270600 chrUn 89.130 46 5 0 6581 6626 84628878 84628833 2.600000e-04 58.4
18 TraesCS7B01G270600 chrUn 100.000 31 0 0 6576 6606 316353584 316353614 2.600000e-04 58.4
19 TraesCS7B01G270600 chr6A 100.000 31 0 0 6576 6606 2709936 2709966 2.600000e-04 58.4
20 TraesCS7B01G270600 chr1A 90.909 44 2 2 6576 6618 253909056 253909014 2.600000e-04 58.4
21 TraesCS7B01G270600 chr1A 100.000 31 0 0 6576 6606 583760516 583760546 2.600000e-04 58.4
22 TraesCS7B01G270600 chr5B 96.970 33 1 0 3870 3902 681186852 681186884 1.000000e-03 56.5
23 TraesCS7B01G270600 chr6B 90.476 42 2 2 6578 6618 356803928 356803888 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G270600 chr7B 496271022 496277685 6663 False 5803.000000 11092 100.000000 1 6664 2 chr7B.!!$F1 6663
1 TraesCS7B01G270600 chr7D 472286857 472294638 7781 False 2957.666667 6802 94.249667 28 6295 3 chr7D.!!$F1 6267
2 TraesCS7B01G270600 chr7A 523941927 523949763 7836 True 1219.666667 2700 88.932167 1 6242 6 chr7A.!!$R1 6241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.036010 CAGAGGAACCCAGTGCGAAT 60.036 55.0 0.0 0.0 0.00 3.34 F
252 259 0.492276 CCCTGCCCTACCCTACCTAT 59.508 60.0 0.0 0.0 0.00 2.57 F
1958 3762 1.130777 ACCCTTTTTGCAACATGCCT 58.869 45.0 0.0 0.0 44.23 4.75 F
3112 4997 0.251077 CCACCTCCTGCTTCTTGCTT 60.251 55.0 0.0 0.0 43.37 3.91 F
4478 6463 0.396435 TGCAGATTGAACGGGACACT 59.604 50.0 0.0 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1529 1729 1.290203 ATGCACGGTAGAGCGAAATG 58.710 50.000 8.29 0.00 36.74 2.32 R
2106 3912 1.761174 GAGGCCCACAACAGGAAGA 59.239 57.895 0.00 0.00 0.00 2.87 R
3569 5462 0.318614 GATAGAGCTGGCAGACTCGC 60.319 60.000 20.86 14.04 37.99 5.03 R
4866 6866 0.466124 GCCCTCTTAACAGATCGGCT 59.534 55.000 0.00 0.00 39.65 5.52 R
5680 7681 0.108138 GACACCAGACCCTCCATTCG 60.108 60.000 0.00 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.036010 CAGAGGAACCCAGTGCGAAT 60.036 55.000 0.00 0.00 0.00 3.34
20 21 1.207089 CAGAGGAACCCAGTGCGAATA 59.793 52.381 0.00 0.00 0.00 1.75
53 54 2.244651 GCTTCCGCCGCGTGATTAT 61.245 57.895 12.58 0.00 0.00 1.28
72 73 2.110213 GCGCCGGATCCACCAATA 59.890 61.111 13.41 0.00 38.90 1.90
242 249 3.329889 CCACACTGCCCTGCCCTA 61.330 66.667 0.00 0.00 0.00 3.53
243 250 2.045926 CACACTGCCCTGCCCTAC 60.046 66.667 0.00 0.00 0.00 3.18
244 251 3.330720 ACACTGCCCTGCCCTACC 61.331 66.667 0.00 0.00 0.00 3.18
245 252 4.115199 CACTGCCCTGCCCTACCC 62.115 72.222 0.00 0.00 0.00 3.69
246 253 4.354943 ACTGCCCTGCCCTACCCT 62.355 66.667 0.00 0.00 0.00 4.34
247 254 2.040884 CTGCCCTGCCCTACCCTA 60.041 66.667 0.00 0.00 0.00 3.53
248 255 2.366435 TGCCCTGCCCTACCCTAC 60.366 66.667 0.00 0.00 0.00 3.18
249 256 3.169242 GCCCTGCCCTACCCTACC 61.169 72.222 0.00 0.00 0.00 3.18
250 257 2.703430 CCCTGCCCTACCCTACCT 59.297 66.667 0.00 0.00 0.00 3.08
251 258 1.943857 CCCTGCCCTACCCTACCTA 59.056 63.158 0.00 0.00 0.00 3.08
252 259 0.492276 CCCTGCCCTACCCTACCTAT 59.508 60.000 0.00 0.00 0.00 2.57
253 260 1.132495 CCCTGCCCTACCCTACCTATT 60.132 57.143 0.00 0.00 0.00 1.73
266 437 1.152226 CCTATTCGCCTCCTCCCCT 60.152 63.158 0.00 0.00 0.00 4.79
267 438 1.188871 CCTATTCGCCTCCTCCCCTC 61.189 65.000 0.00 0.00 0.00 4.30
272 443 4.523282 GCCTCCTCCCCTCCCCAT 62.523 72.222 0.00 0.00 0.00 4.00
273 444 2.122189 CCTCCTCCCCTCCCCATC 60.122 72.222 0.00 0.00 0.00 3.51
275 446 3.791076 TCCTCCCCTCCCCATCCC 61.791 72.222 0.00 0.00 0.00 3.85
276 447 4.928520 CCTCCCCTCCCCATCCCC 62.929 77.778 0.00 0.00 0.00 4.81
787 958 1.903877 CGTGGGCTCTGGGTTCATCT 61.904 60.000 0.00 0.00 0.00 2.90
799 970 1.634702 GTTCATCTGAGACAGGTCGC 58.365 55.000 0.00 0.00 34.09 5.19
826 997 1.429927 TCGGTTTCGTGCGAAAAGCA 61.430 50.000 19.28 5.43 44.40 3.91
928 1107 4.520492 TCTTGAGATTTTGTTCTGAAGGCC 59.480 41.667 0.00 0.00 37.50 5.19
1026 1205 4.740934 GCGACCTCTAACAAGCCAATATCT 60.741 45.833 0.00 0.00 0.00 1.98
1092 1271 5.306532 TGAACAAGGTTAGTAGCTACTCG 57.693 43.478 29.28 14.00 37.73 4.18
1250 1444 7.010339 AGCTTGACAAGGTATTACTCTCTTT 57.990 36.000 18.03 0.00 37.49 2.52
1254 1448 9.442047 CTTGACAAGGTATTACTCTCTTTCAAT 57.558 33.333 7.35 0.00 0.00 2.57
1269 1463 2.192664 TCAATGCCGTTTCTTGCCTA 57.807 45.000 0.00 0.00 0.00 3.93
1363 1563 5.702865 TGAAACAATGCTTGCTAGATTGTC 58.297 37.500 18.35 11.85 38.96 3.18
1387 1587 4.911514 TTGCTAAACAAGACCCTTGTTC 57.088 40.909 20.93 12.03 41.30 3.18
1388 1588 3.892284 TGCTAAACAAGACCCTTGTTCA 58.108 40.909 20.93 13.95 41.30 3.18
1421 1621 7.925483 CAGATTGTAAAAGATTGGGTGAAACAA 59.075 33.333 0.00 0.00 39.98 2.83
1529 1729 1.535462 AGTGTATGCGTTGCTTTCACC 59.465 47.619 9.64 0.00 35.68 4.02
1534 1734 2.132740 TGCGTTGCTTTCACCATTTC 57.867 45.000 0.00 0.00 0.00 2.17
1575 1780 6.313744 ACAGCTTAAAGTTTCTAACGCATT 57.686 33.333 0.00 0.00 36.23 3.56
1591 1796 2.163412 CGCATTAGGCCAGTAAAAGCAA 59.837 45.455 5.01 0.00 40.31 3.91
1601 1806 5.344884 GCCAGTAAAAGCAACACTGTTTTA 58.655 37.500 0.00 0.00 38.39 1.52
1606 1811 6.983890 AGTAAAAGCAACACTGTTTTATTGGG 59.016 34.615 0.00 0.00 35.19 4.12
1664 1870 2.187163 GCTTGAGTAGGGGTCGGC 59.813 66.667 0.00 0.00 0.00 5.54
1680 1886 2.481185 GTCGGCATTCGGTTTAAACTGA 59.519 45.455 23.11 23.11 42.28 3.41
1691 1897 4.979815 CGGTTTAAACTGACATTTTGGGTC 59.020 41.667 20.51 0.00 37.48 4.46
1752 1958 1.351076 TCTGACTGAACAGGCCATGA 58.649 50.000 5.01 0.00 38.31 3.07
1755 1961 2.422479 CTGACTGAACAGGCCATGAATG 59.578 50.000 5.01 0.00 34.90 2.67
1794 2002 9.476202 GCTTGAAACTGATTTTATTTTGGTACT 57.524 29.630 0.00 0.00 0.00 2.73
1838 2048 6.873076 TGCATCTGTTTTGAACAAAAGAAACT 59.127 30.769 12.09 0.00 41.61 2.66
1840 2050 7.603515 CATCTGTTTTGAACAAAAGAAACTCG 58.396 34.615 12.09 1.40 41.61 4.18
1841 2051 6.674066 TCTGTTTTGAACAAAAGAAACTCGT 58.326 32.000 12.09 0.00 41.61 4.18
1844 2054 8.973835 TGTTTTGAACAAAAGAAACTCGTTAT 57.026 26.923 12.09 0.00 40.53 1.89
1864 2074 4.706842 ATTATGGAAGTAGGCACCGATT 57.293 40.909 0.00 0.00 0.00 3.34
1865 2075 4.497291 TTATGGAAGTAGGCACCGATTT 57.503 40.909 0.00 0.00 0.00 2.17
1866 2076 2.107950 TGGAAGTAGGCACCGATTTG 57.892 50.000 0.00 0.00 0.00 2.32
1890 2100 8.625786 TGAATTGAACAAAGAATCTGAGATCA 57.374 30.769 0.00 0.00 0.00 2.92
1891 2101 9.239551 TGAATTGAACAAAGAATCTGAGATCAT 57.760 29.630 0.00 0.00 0.00 2.45
1893 2103 6.997239 TGAACAAAGAATCTGAGATCATGG 57.003 37.500 0.00 0.00 0.00 3.66
1895 2105 6.944290 TGAACAAAGAATCTGAGATCATGGTT 59.056 34.615 0.00 0.00 0.00 3.67
1906 3707 9.636789 ATCTGAGATCATGGTTCATTGAATAAA 57.363 29.630 1.78 0.00 0.00 1.40
1953 3757 9.914834 ATATACTATCTAACCCTTTTTGCAACA 57.085 29.630 0.00 0.00 0.00 3.33
1958 3762 1.130777 ACCCTTTTTGCAACATGCCT 58.869 45.000 0.00 0.00 44.23 4.75
1965 3769 5.469421 CCTTTTTGCAACATGCCTTTATCAA 59.531 36.000 0.00 0.00 44.23 2.57
1970 3774 4.186159 GCAACATGCCTTTATCAAGCATT 58.814 39.130 0.00 0.00 37.42 3.56
2043 3849 2.595750 TGTTTTGGTAGGTCCATGGG 57.404 50.000 13.02 0.00 46.60 4.00
2106 3912 7.817478 TCATATGTGAATCGCGAGGTAATATTT 59.183 33.333 16.66 0.00 0.00 1.40
2146 3954 6.164417 TCCAGTGTAGTTTGTGTTAGCTAA 57.836 37.500 0.86 0.86 0.00 3.09
2156 3964 4.764679 TGTGTTAGCTAAAGCATTGGTG 57.235 40.909 7.99 0.00 45.16 4.17
2157 3965 4.141287 TGTGTTAGCTAAAGCATTGGTGT 58.859 39.130 7.99 0.00 45.16 4.16
2160 3968 5.402270 GTGTTAGCTAAAGCATTGGTGTTTG 59.598 40.000 7.99 0.00 45.16 2.93
2161 3969 5.300539 TGTTAGCTAAAGCATTGGTGTTTGA 59.699 36.000 7.99 0.00 45.16 2.69
2162 3970 6.015519 TGTTAGCTAAAGCATTGGTGTTTGAT 60.016 34.615 7.99 0.00 45.16 2.57
2372 4181 7.837689 ACCATCTGTAAGTGTGTACTTCCTATA 59.162 37.037 0.00 0.00 43.53 1.31
2419 4229 9.959749 TTGTTTCTCAATTCATACCAAGTTTAC 57.040 29.630 0.00 0.00 0.00 2.01
2605 4445 6.777580 TGCTATCCATAGTGTGATCTACTTCA 59.222 38.462 8.20 0.00 32.96 3.02
2660 4500 4.040755 ACATATGGGGAAGTGTTAGAGCT 58.959 43.478 7.80 0.00 0.00 4.09
2669 4509 6.042208 GGGGAAGTGTTAGAGCTGTTATATCT 59.958 42.308 0.00 0.00 0.00 1.98
2670 4510 7.419172 GGGGAAGTGTTAGAGCTGTTATATCTT 60.419 40.741 0.00 0.00 0.00 2.40
2671 4511 7.439655 GGGAAGTGTTAGAGCTGTTATATCTTG 59.560 40.741 0.00 0.00 0.00 3.02
2672 4512 7.982354 GGAAGTGTTAGAGCTGTTATATCTTGT 59.018 37.037 0.00 0.00 0.00 3.16
2708 4562 9.520515 TGAAAAATAGTTCTCTTAGGAAGCATT 57.479 29.630 0.00 0.00 0.00 3.56
2724 4579 6.767423 AGGAAGCATTTTAAGTTGCAACATTT 59.233 30.769 30.11 18.99 41.35 2.32
2818 4679 7.718334 TCATTATCAACTAGTCTCCTGTTCA 57.282 36.000 0.00 0.00 0.00 3.18
2839 4700 0.320374 TGACCTCACGGTAAAGCCTG 59.680 55.000 0.00 0.00 45.73 4.85
2845 4706 1.134037 TCACGGTAAAGCCTGGTTGTT 60.134 47.619 0.00 0.00 34.25 2.83
2878 4760 5.188751 CAGAACTCCTTCCTAGAATGAACCT 59.811 44.000 0.00 0.00 0.00 3.50
2963 4846 4.764050 TGGGACAGTTCTTCACTAACAA 57.236 40.909 0.00 0.00 32.76 2.83
2967 4850 5.513267 GGGACAGTTCTTCACTAACAATCCT 60.513 44.000 0.00 0.00 35.25 3.24
2988 4871 3.531538 TGCGGTGATAAGAGGACAATTC 58.468 45.455 0.00 0.00 0.00 2.17
2989 4872 3.055458 TGCGGTGATAAGAGGACAATTCA 60.055 43.478 0.00 0.00 0.00 2.57
2990 4873 3.309954 GCGGTGATAAGAGGACAATTCAC 59.690 47.826 0.00 0.00 34.24 3.18
3069 4952 1.070577 CGCTCGTGTTCTTTGAACTGG 60.071 52.381 11.06 4.20 0.00 4.00
3111 4996 1.130054 TCCACCTCCTGCTTCTTGCT 61.130 55.000 0.00 0.00 43.37 3.91
3112 4997 0.251077 CCACCTCCTGCTTCTTGCTT 60.251 55.000 0.00 0.00 43.37 3.91
3113 4998 1.003580 CCACCTCCTGCTTCTTGCTTA 59.996 52.381 0.00 0.00 43.37 3.09
3120 5007 8.097038 CACCTCCTGCTTCTTGCTTATATATTA 58.903 37.037 0.00 0.00 43.37 0.98
3569 5462 0.887933 ATTGGGCTTTACTGGTTGCG 59.112 50.000 0.00 0.00 0.00 4.85
3671 5564 1.068055 CCAACTCCAGTGATGCTTTGC 60.068 52.381 0.00 0.00 0.00 3.68
3800 5693 5.339008 ACTCCAGCTATAATGTTTCGACA 57.661 39.130 0.00 0.00 0.00 4.35
3842 5735 4.058721 AGAACAATTCCAGTTTGGCAAC 57.941 40.909 0.00 0.00 37.47 4.17
3884 5779 6.909550 TGGCCTACAAAAACATCTTACATT 57.090 33.333 3.32 0.00 0.00 2.71
3896 5791 6.045072 ACATCTTACATTTTGGTACGGAGA 57.955 37.500 0.00 0.00 0.00 3.71
3925 5820 9.463443 GTATTCAACAACTGCTTATTTTGACTT 57.537 29.630 0.00 0.00 0.00 3.01
3933 5830 6.749139 ACTGCTTATTTTGACTTTTCCCTTC 58.251 36.000 0.00 0.00 0.00 3.46
3939 5836 8.533569 TTATTTTGACTTTTCCCTTCACTCTT 57.466 30.769 0.00 0.00 0.00 2.85
3940 5837 6.850752 TTTTGACTTTTCCCTTCACTCTTT 57.149 33.333 0.00 0.00 0.00 2.52
3941 5838 5.835113 TTGACTTTTCCCTTCACTCTTTG 57.165 39.130 0.00 0.00 0.00 2.77
4123 6026 7.443259 GGCAACTGACTTTAAAGGTATGTTA 57.557 36.000 19.14 0.00 0.00 2.41
4163 6066 2.304470 TGCACAGGCTTGTCATAGGTTA 59.696 45.455 0.00 0.00 41.91 2.85
4189 6096 3.052944 TCCTTTTGGGGCTATACTGCATT 60.053 43.478 0.00 0.00 40.87 3.56
4194 6101 3.045634 TGGGGCTATACTGCATTAGTGT 58.954 45.455 0.00 0.00 40.65 3.55
4238 6149 2.282407 GTGGAATTGGGATTGCATTGC 58.718 47.619 0.46 0.46 43.98 3.56
4245 6156 5.617528 ATTGGGATTGCATTGCTTTGATA 57.382 34.783 10.49 0.00 0.00 2.15
4246 6157 5.617528 TTGGGATTGCATTGCTTTGATAT 57.382 34.783 10.49 0.00 0.00 1.63
4318 6233 4.691216 GGTGTCAGAGTGGAAATTAGTGAC 59.309 45.833 0.00 0.00 34.68 3.67
4320 6235 5.635700 GTGTCAGAGTGGAAATTAGTGACTC 59.364 44.000 0.00 0.00 35.07 3.36
4361 6276 4.330620 GGTGACAATTTGCATGCCTATTTG 59.669 41.667 16.68 16.60 0.00 2.32
4375 6290 4.340666 TGCCTATTTGAAACAGCAAACAGA 59.659 37.500 0.00 0.00 40.23 3.41
4378 6293 3.518634 TTTGAAACAGCAAACAGACCC 57.481 42.857 0.00 0.00 33.16 4.46
4388 6303 3.632145 AGCAAACAGACCCTGTGTTTTAG 59.368 43.478 0.00 0.00 44.62 1.85
4395 6310 5.124936 ACAGACCCTGTGTTTTAGTTTCAAC 59.875 40.000 0.00 0.00 43.63 3.18
4478 6463 0.396435 TGCAGATTGAACGGGACACT 59.604 50.000 0.00 0.00 0.00 3.55
4866 6866 6.679542 TCTACTGGGATTGATACTGAACCTA 58.320 40.000 0.00 0.00 0.00 3.08
4890 6890 3.452474 CGATCTGTTAAGAGGGCTTCAG 58.548 50.000 0.00 0.00 35.37 3.02
4919 6919 4.342092 CCAGTTCACCCAAAAACTTCATCT 59.658 41.667 0.00 0.00 33.53 2.90
5066 7066 4.876679 AGTTCATCACATGCATCTGAGAAG 59.123 41.667 10.52 3.71 0.00 2.85
5081 7081 4.285517 TCTGAGAAGAGCTTGGATTCAGTT 59.714 41.667 12.72 0.00 33.94 3.16
5186 7186 1.072159 GGACAGCACTGCTCCAACT 59.928 57.895 0.00 0.00 36.40 3.16
5349 7349 2.965147 CACTTTGGTGGGAATGGAGTTT 59.035 45.455 0.00 0.00 39.59 2.66
5533 7534 3.458831 AGTCAGATGGATCCCAGAAGTT 58.541 45.455 9.90 0.00 36.75 2.66
5566 7567 5.450137 GGCATGATCTTGAACTCAATCCTTG 60.450 44.000 12.54 0.00 35.02 3.61
5580 7581 7.721286 CTCAATCCTTGTACATTGAGTATCC 57.279 40.000 21.19 0.00 45.93 2.59
5666 7667 1.456296 TGACATCAACAGCATGAGGC 58.544 50.000 0.00 0.00 39.69 4.70
5736 7737 6.386654 TGTTCAACTCACAAACTTTCCTTTC 58.613 36.000 0.00 0.00 0.00 2.62
5930 7932 3.100817 CCGCAGCTTAATTTGTCGATTG 58.899 45.455 0.00 0.00 0.00 2.67
5931 7933 2.527487 CGCAGCTTAATTTGTCGATTGC 59.473 45.455 0.00 0.00 0.00 3.56
6019 8021 4.354087 ACTTGTTTACTTCCCAGGGATTCT 59.646 41.667 9.80 0.00 0.00 2.40
6028 8030 0.471617 CCAGGGATTCTGCTGTAGGG 59.528 60.000 0.00 0.00 42.05 3.53
6052 8054 6.603201 GGCTAGATTAGAGAGAGATGTGCTAT 59.397 42.308 0.00 0.00 0.00 2.97
6111 8113 8.665906 CCCTCCCAACCTTTGTAATATAAGATA 58.334 37.037 0.00 0.00 0.00 1.98
6141 8143 2.034179 GTGGTTCCTTGTACTTTGGCAC 59.966 50.000 0.00 0.00 0.00 5.01
6179 8182 1.884579 CAGTTTCATGTTCAGGCTGCT 59.115 47.619 10.34 0.00 0.00 4.24
6184 8188 0.958876 CATGTTCAGGCTGCTGCTGA 60.959 55.000 15.64 13.30 39.59 4.26
6205 8209 6.821665 GCTGAATGTGAGTTTGGGTAACTATA 59.178 38.462 0.00 0.00 47.00 1.31
6249 8253 8.210946 ACCATGTAATACTGTTATACATGCTGT 58.789 33.333 25.05 19.58 43.76 4.40
6272 8276 2.096248 CTCGTCTAAAGCACTCCCTCT 58.904 52.381 0.00 0.00 0.00 3.69
6274 8278 3.886505 CTCGTCTAAAGCACTCCCTCTAT 59.113 47.826 0.00 0.00 0.00 1.98
6304 8308 9.865321 TTGTATACGAGGCCACTATATATTTTC 57.135 33.333 5.01 0.00 0.00 2.29
6305 8309 9.027202 TGTATACGAGGCCACTATATATTTTCA 57.973 33.333 5.01 0.00 0.00 2.69
6307 8311 8.948631 ATACGAGGCCACTATATATTTTCATG 57.051 34.615 5.01 0.00 0.00 3.07
6308 8312 5.643777 ACGAGGCCACTATATATTTTCATGC 59.356 40.000 5.01 0.00 0.00 4.06
6309 8313 5.065218 CGAGGCCACTATATATTTTCATGCC 59.935 44.000 5.01 0.00 35.42 4.40
6310 8314 6.144845 AGGCCACTATATATTTTCATGCCT 57.855 37.500 5.01 0.00 40.49 4.75
6311 8315 7.270832 AGGCCACTATATATTTTCATGCCTA 57.729 36.000 5.01 0.00 43.27 3.93
6312 8316 7.698912 AGGCCACTATATATTTTCATGCCTAA 58.301 34.615 5.01 0.00 43.27 2.69
6313 8317 8.339247 AGGCCACTATATATTTTCATGCCTAAT 58.661 33.333 5.01 0.00 43.27 1.73
6314 8318 9.627123 GGCCACTATATATTTTCATGCCTAATA 57.373 33.333 0.00 0.00 32.53 0.98
6323 8327 4.893424 TTCATGCCTAATAACTTTCGCC 57.107 40.909 0.00 0.00 0.00 5.54
6324 8328 3.879998 TCATGCCTAATAACTTTCGCCA 58.120 40.909 0.00 0.00 0.00 5.69
6325 8329 4.460263 TCATGCCTAATAACTTTCGCCAT 58.540 39.130 0.00 0.00 0.00 4.40
6326 8330 4.887071 TCATGCCTAATAACTTTCGCCATT 59.113 37.500 0.00 0.00 0.00 3.16
6327 8331 5.359576 TCATGCCTAATAACTTTCGCCATTT 59.640 36.000 0.00 0.00 0.00 2.32
6328 8332 6.544197 TCATGCCTAATAACTTTCGCCATTTA 59.456 34.615 0.00 0.00 0.00 1.40
6329 8333 6.952773 TGCCTAATAACTTTCGCCATTTAT 57.047 33.333 0.00 0.00 0.00 1.40
6330 8334 7.341445 TGCCTAATAACTTTCGCCATTTATT 57.659 32.000 0.00 0.00 0.00 1.40
6331 8335 8.453238 TGCCTAATAACTTTCGCCATTTATTA 57.547 30.769 0.00 0.00 0.00 0.98
6332 8336 9.073475 TGCCTAATAACTTTCGCCATTTATTAT 57.927 29.630 0.00 0.00 30.03 1.28
6337 8341 8.836268 ATAACTTTCGCCATTTATTATACCGA 57.164 30.769 0.00 0.00 0.00 4.69
6338 8342 7.556733 AACTTTCGCCATTTATTATACCGAA 57.443 32.000 0.00 0.00 0.00 4.30
6339 8343 7.556733 ACTTTCGCCATTTATTATACCGAAA 57.443 32.000 0.00 0.00 39.79 3.46
6340 8344 7.987649 ACTTTCGCCATTTATTATACCGAAAA 58.012 30.769 0.00 0.00 40.95 2.29
6341 8345 8.460428 ACTTTCGCCATTTATTATACCGAAAAA 58.540 29.630 0.00 0.00 40.95 1.94
6342 8346 8.844441 TTTCGCCATTTATTATACCGAAAAAG 57.156 30.769 0.00 0.00 39.34 2.27
6343 8347 7.556733 TCGCCATTTATTATACCGAAAAAGT 57.443 32.000 0.00 0.00 0.00 2.66
6344 8348 7.411274 TCGCCATTTATTATACCGAAAAAGTG 58.589 34.615 0.00 0.00 0.00 3.16
6345 8349 6.141685 CGCCATTTATTATACCGAAAAAGTGC 59.858 38.462 0.00 0.00 0.00 4.40
6346 8350 6.141685 GCCATTTATTATACCGAAAAAGTGCG 59.858 38.462 0.00 0.00 0.00 5.34
6347 8351 7.190871 CCATTTATTATACCGAAAAAGTGCGT 58.809 34.615 0.00 0.00 0.00 5.24
6348 8352 7.698970 CCATTTATTATACCGAAAAAGTGCGTT 59.301 33.333 0.00 0.00 0.00 4.84
6349 8353 9.705471 CATTTATTATACCGAAAAAGTGCGTTA 57.295 29.630 0.00 0.00 0.00 3.18
6354 8358 4.011058 ACCGAAAAAGTGCGTTATATGC 57.989 40.909 0.00 0.00 0.00 3.14
6355 8359 3.181504 ACCGAAAAAGTGCGTTATATGCC 60.182 43.478 0.00 0.00 0.00 4.40
6356 8360 3.181505 CCGAAAAAGTGCGTTATATGCCA 60.182 43.478 0.00 0.00 0.00 4.92
6357 8361 4.407818 CGAAAAAGTGCGTTATATGCCAA 58.592 39.130 0.00 0.00 0.00 4.52
6358 8362 4.854291 CGAAAAAGTGCGTTATATGCCAAA 59.146 37.500 0.00 0.00 0.00 3.28
6359 8363 5.343593 CGAAAAAGTGCGTTATATGCCAAAA 59.656 36.000 0.00 0.00 0.00 2.44
6360 8364 6.129062 CGAAAAAGTGCGTTATATGCCAAAAA 60.129 34.615 0.00 0.00 0.00 1.94
6383 8387 6.730960 AAAATGTCATTGGATGCACATTTC 57.269 33.333 19.51 0.00 42.77 2.17
6384 8388 5.670792 AATGTCATTGGATGCACATTTCT 57.329 34.783 0.00 0.00 37.54 2.52
6385 8389 4.443913 TGTCATTGGATGCACATTTCTG 57.556 40.909 0.00 0.00 0.00 3.02
6386 8390 3.193903 TGTCATTGGATGCACATTTCTGG 59.806 43.478 0.00 0.00 0.00 3.86
6387 8391 3.194116 GTCATTGGATGCACATTTCTGGT 59.806 43.478 0.00 0.00 0.00 4.00
6388 8392 3.193903 TCATTGGATGCACATTTCTGGTG 59.806 43.478 0.00 0.00 39.25 4.17
6389 8393 2.583024 TGGATGCACATTTCTGGTGA 57.417 45.000 0.00 0.00 38.54 4.02
6390 8394 3.090210 TGGATGCACATTTCTGGTGAT 57.910 42.857 0.00 0.00 38.54 3.06
6391 8395 4.233632 TGGATGCACATTTCTGGTGATA 57.766 40.909 0.00 0.00 38.54 2.15
6392 8396 4.795469 TGGATGCACATTTCTGGTGATAT 58.205 39.130 0.00 0.00 38.54 1.63
6393 8397 5.939447 TGGATGCACATTTCTGGTGATATA 58.061 37.500 0.00 0.00 38.54 0.86
6394 8398 6.545567 TGGATGCACATTTCTGGTGATATAT 58.454 36.000 0.00 0.00 38.54 0.86
6395 8399 7.005902 TGGATGCACATTTCTGGTGATATATT 58.994 34.615 0.00 0.00 38.54 1.28
6396 8400 7.506599 TGGATGCACATTTCTGGTGATATATTT 59.493 33.333 0.00 0.00 38.54 1.40
6397 8401 8.362639 GGATGCACATTTCTGGTGATATATTTT 58.637 33.333 0.00 0.00 38.54 1.82
6398 8402 9.754382 GATGCACATTTCTGGTGATATATTTTT 57.246 29.630 0.00 0.00 38.54 1.94
6399 8403 8.929827 TGCACATTTCTGGTGATATATTTTTG 57.070 30.769 0.00 0.00 38.54 2.44
6400 8404 8.747471 TGCACATTTCTGGTGATATATTTTTGA 58.253 29.630 0.00 0.00 38.54 2.69
6401 8405 9.585099 GCACATTTCTGGTGATATATTTTTGAA 57.415 29.630 0.00 0.00 38.54 2.69
6435 8439 9.495572 TGTTGTTGAAAATTTTAAGTTGGAAGT 57.504 25.926 2.75 0.00 0.00 3.01
6444 8448 7.749539 ATTTTAAGTTGGAAGTTTTGACACG 57.250 32.000 0.00 0.00 0.00 4.49
6445 8449 6.497785 TTTAAGTTGGAAGTTTTGACACGA 57.502 33.333 0.00 0.00 0.00 4.35
6446 8450 6.497785 TTAAGTTGGAAGTTTTGACACGAA 57.502 33.333 0.00 0.00 0.00 3.85
6447 8451 5.379732 AAGTTGGAAGTTTTGACACGAAA 57.620 34.783 0.00 0.00 0.00 3.46
6448 8452 5.379732 AGTTGGAAGTTTTGACACGAAAA 57.620 34.783 0.00 0.00 0.00 2.29
6449 8453 5.774630 AGTTGGAAGTTTTGACACGAAAAA 58.225 33.333 0.00 0.00 0.00 1.94
6450 8454 5.631929 AGTTGGAAGTTTTGACACGAAAAAC 59.368 36.000 4.08 4.08 44.29 2.43
6451 8455 5.122512 TGGAAGTTTTGACACGAAAAACA 57.877 34.783 12.69 0.00 45.66 2.83
6452 8456 5.529791 TGGAAGTTTTGACACGAAAAACAA 58.470 33.333 12.69 0.00 45.66 2.83
6453 8457 5.983720 TGGAAGTTTTGACACGAAAAACAAA 59.016 32.000 12.69 0.00 45.66 2.83
6454 8458 6.479001 TGGAAGTTTTGACACGAAAAACAAAA 59.521 30.769 12.69 0.00 45.66 2.44
6455 8459 7.171678 TGGAAGTTTTGACACGAAAAACAAAAT 59.828 29.630 12.69 0.00 45.66 1.82
6456 8460 7.477112 GGAAGTTTTGACACGAAAAACAAAATG 59.523 33.333 12.69 0.00 45.66 2.32
6457 8461 6.826612 AGTTTTGACACGAAAAACAAAATGG 58.173 32.000 12.69 0.00 45.66 3.16
6458 8462 6.425417 AGTTTTGACACGAAAAACAAAATGGT 59.575 30.769 12.69 0.00 45.66 3.55
6459 8463 6.396459 TTTGACACGAAAAACAAAATGGTC 57.604 33.333 0.00 0.00 30.94 4.02
6460 8464 4.425520 TGACACGAAAAACAAAATGGTCC 58.574 39.130 0.00 0.00 0.00 4.46
6461 8465 4.158764 TGACACGAAAAACAAAATGGTCCT 59.841 37.500 0.00 0.00 0.00 3.85
6462 8466 4.429108 ACACGAAAAACAAAATGGTCCTG 58.571 39.130 0.00 0.00 0.00 3.86
6463 8467 4.081917 ACACGAAAAACAAAATGGTCCTGT 60.082 37.500 0.00 0.00 0.00 4.00
6464 8468 5.125739 ACACGAAAAACAAAATGGTCCTGTA 59.874 36.000 0.00 0.00 0.00 2.74
6465 8469 6.183360 ACACGAAAAACAAAATGGTCCTGTAT 60.183 34.615 0.00 0.00 0.00 2.29
6466 8470 7.013464 ACACGAAAAACAAAATGGTCCTGTATA 59.987 33.333 0.00 0.00 0.00 1.47
6467 8471 7.325097 CACGAAAAACAAAATGGTCCTGTATAC 59.675 37.037 0.00 0.00 0.00 1.47
6468 8472 7.013464 ACGAAAAACAAAATGGTCCTGTATACA 59.987 33.333 5.25 5.25 0.00 2.29
6469 8473 7.537306 CGAAAAACAAAATGGTCCTGTATACAG 59.463 37.037 23.58 23.58 43.40 2.74
6470 8474 8.472007 AAAAACAAAATGGTCCTGTATACAGA 57.528 30.769 30.41 15.68 46.59 3.41
6471 8475 8.472007 AAAACAAAATGGTCCTGTATACAGAA 57.528 30.769 30.41 11.43 46.59 3.02
6472 8476 8.472007 AAACAAAATGGTCCTGTATACAGAAA 57.528 30.769 30.41 16.97 46.59 2.52
6473 8477 8.650143 AACAAAATGGTCCTGTATACAGAAAT 57.350 30.769 30.41 16.11 46.59 2.17
6474 8478 8.055279 ACAAAATGGTCCTGTATACAGAAATG 57.945 34.615 30.41 15.73 46.59 2.32
6475 8479 6.699575 AAATGGTCCTGTATACAGAAATGC 57.300 37.500 30.41 15.79 46.59 3.56
6476 8480 5.636903 ATGGTCCTGTATACAGAAATGCT 57.363 39.130 30.41 10.36 46.59 3.79
6492 8496 7.744087 AGAAATGCTGAGTACAATTGTGTAA 57.256 32.000 21.42 0.00 41.89 2.41
6493 8497 8.340618 AGAAATGCTGAGTACAATTGTGTAAT 57.659 30.769 21.42 0.63 41.89 1.89
6494 8498 8.796475 AGAAATGCTGAGTACAATTGTGTAATT 58.204 29.630 21.42 2.90 41.89 1.40
6495 8499 9.410556 GAAATGCTGAGTACAATTGTGTAATTT 57.589 29.630 21.42 14.83 41.89 1.82
6496 8500 9.762933 AAATGCTGAGTACAATTGTGTAATTTT 57.237 25.926 21.42 7.75 41.89 1.82
6497 8501 9.762933 AATGCTGAGTACAATTGTGTAATTTTT 57.237 25.926 21.42 3.68 41.89 1.94
6595 8599 9.967346 AGAAAGAACCTAAATTCTAAAAAGTGC 57.033 29.630 0.00 0.00 37.99 4.40
6596 8600 9.744468 GAAAGAACCTAAATTCTAAAAAGTGCA 57.256 29.630 0.00 0.00 37.99 4.57
6597 8601 9.750125 AAAGAACCTAAATTCTAAAAAGTGCAG 57.250 29.630 0.00 0.00 37.99 4.41
6598 8602 7.371159 AGAACCTAAATTCTAAAAAGTGCAGC 58.629 34.615 0.00 0.00 37.16 5.25
6599 8603 6.901081 ACCTAAATTCTAAAAAGTGCAGCT 57.099 33.333 0.00 0.00 0.00 4.24
6600 8604 6.681777 ACCTAAATTCTAAAAAGTGCAGCTG 58.318 36.000 10.11 10.11 0.00 4.24
6601 8605 6.265422 ACCTAAATTCTAAAAAGTGCAGCTGT 59.735 34.615 16.64 0.00 0.00 4.40
6602 8606 6.583806 CCTAAATTCTAAAAAGTGCAGCTGTG 59.416 38.462 16.64 0.00 0.00 3.66
6615 8619 3.730761 CTGTGCTGCTTGGGCGTC 61.731 66.667 0.00 0.00 42.25 5.19
6633 8637 4.592192 CCTCGCGCACCATCCGAT 62.592 66.667 8.75 0.00 0.00 4.18
6634 8638 3.032609 CTCGCGCACCATCCGATC 61.033 66.667 8.75 0.00 0.00 3.69
6635 8639 3.490793 CTCGCGCACCATCCGATCT 62.491 63.158 8.75 0.00 0.00 2.75
6636 8640 3.333189 CGCGCACCATCCGATCTG 61.333 66.667 8.75 0.00 0.00 2.90
6637 8641 2.969238 GCGCACCATCCGATCTGG 60.969 66.667 0.30 0.00 39.80 3.86
6648 8652 3.313750 GATCTGGATCGCACACGC 58.686 61.111 0.00 0.00 39.84 5.34
6658 8662 4.250431 GCACACGCGCAGGTTTGT 62.250 61.111 5.73 0.00 0.00 2.83
6659 8663 2.052237 CACACGCGCAGGTTTGTC 60.052 61.111 5.73 0.00 0.00 3.18
6660 8664 3.636043 ACACGCGCAGGTTTGTCG 61.636 61.111 5.73 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.354188 CGATAATCACGCGGCGGA 60.354 61.111 27.37 20.06 0.00 5.54
72 73 2.337359 TTTAGTCCTGGGCTGTAGGT 57.663 50.000 11.95 0.00 36.67 3.08
242 249 0.561680 AGGAGGCGAATAGGTAGGGT 59.438 55.000 0.00 0.00 0.00 4.34
243 250 1.258676 GAGGAGGCGAATAGGTAGGG 58.741 60.000 0.00 0.00 0.00 3.53
244 251 1.258676 GGAGGAGGCGAATAGGTAGG 58.741 60.000 0.00 0.00 0.00 3.18
245 252 1.258676 GGGAGGAGGCGAATAGGTAG 58.741 60.000 0.00 0.00 0.00 3.18
246 253 0.178941 GGGGAGGAGGCGAATAGGTA 60.179 60.000 0.00 0.00 0.00 3.08
247 254 1.459730 GGGGAGGAGGCGAATAGGT 60.460 63.158 0.00 0.00 0.00 3.08
248 255 1.152226 AGGGGAGGAGGCGAATAGG 60.152 63.158 0.00 0.00 0.00 2.57
249 256 1.188871 GGAGGGGAGGAGGCGAATAG 61.189 65.000 0.00 0.00 0.00 1.73
250 257 1.152312 GGAGGGGAGGAGGCGAATA 60.152 63.158 0.00 0.00 0.00 1.75
251 258 2.446802 GGAGGGGAGGAGGCGAAT 60.447 66.667 0.00 0.00 0.00 3.34
252 259 4.798682 GGGAGGGGAGGAGGCGAA 62.799 72.222 0.00 0.00 0.00 4.70
787 958 2.673341 AGAGCGCGACCTGTCTCA 60.673 61.111 12.10 0.00 0.00 3.27
799 970 1.487231 CACGAAACCGAACAGAGCG 59.513 57.895 0.00 0.00 0.00 5.03
826 997 1.373590 CGAACCGCCCCAAAATCGAT 61.374 55.000 0.00 0.00 32.38 3.59
857 1028 1.912371 GAGCACGAAAAAGGCTCGGG 61.912 60.000 0.00 0.00 43.83 5.14
928 1107 1.079543 CCTCACTCCAGGACAAGCG 60.080 63.158 0.00 0.00 35.20 4.68
1092 1271 2.476241 CGGAAACAACCAGTTACCGTAC 59.524 50.000 0.00 0.00 40.26 3.67
1250 1444 1.810151 GTAGGCAAGAAACGGCATTGA 59.190 47.619 0.00 0.00 0.00 2.57
1254 1448 1.975660 AAAGTAGGCAAGAAACGGCA 58.024 45.000 0.00 0.00 0.00 5.69
1325 1521 8.472413 AGCATTGTTTCAATCAGTAAGCATTAT 58.528 29.630 0.00 0.00 30.46 1.28
1363 1563 3.502211 ACAAGGGTCTTGTTTAGCAATCG 59.498 43.478 7.41 0.00 36.36 3.34
1387 1587 8.231837 CCCAATCTTTTACAATCTGCAAATTTG 58.768 33.333 14.03 14.03 0.00 2.32
1388 1588 7.938490 ACCCAATCTTTTACAATCTGCAAATTT 59.062 29.630 0.00 0.00 0.00 1.82
1421 1621 8.275758 TCAGTGTATCCTCTCTGACTAGTTAAT 58.724 37.037 0.00 0.00 34.47 1.40
1442 1642 4.380233 GCCTCTTCAACCATTTGATCAGTG 60.380 45.833 0.00 0.00 41.50 3.66
1529 1729 1.290203 ATGCACGGTAGAGCGAAATG 58.710 50.000 8.29 0.00 36.74 2.32
1534 1734 2.980476 CTGTAATATGCACGGTAGAGCG 59.020 50.000 0.00 0.00 36.74 5.03
1575 1780 3.146066 CAGTGTTGCTTTTACTGGCCTA 58.854 45.455 3.32 0.00 38.46 3.93
1591 1796 2.957474 AGGTGCCCAATAAAACAGTGT 58.043 42.857 0.00 0.00 0.00 3.55
1601 1806 3.643199 ACAAAAACAAAGGTGCCCAAT 57.357 38.095 0.00 0.00 0.00 3.16
1606 1811 9.862585 CTAATTATCAAACAAAAACAAAGGTGC 57.137 29.630 0.00 0.00 0.00 5.01
1646 1852 2.494918 CCGACCCCTACTCAAGCG 59.505 66.667 0.00 0.00 0.00 4.68
1664 1870 6.145371 CCCAAAATGTCAGTTTAAACCGAATG 59.855 38.462 14.72 6.83 0.00 2.67
1680 1886 5.686753 TGCTATATAACCGACCCAAAATGT 58.313 37.500 0.00 0.00 0.00 2.71
1794 2002 5.956068 TGCAGCACATGTTAGTTCATTTA 57.044 34.783 0.00 0.00 0.00 1.40
1838 2048 4.500205 CGGTGCCTACTTCCATAATAACGA 60.500 45.833 0.00 0.00 0.00 3.85
1840 2050 4.952460 TCGGTGCCTACTTCCATAATAAC 58.048 43.478 0.00 0.00 0.00 1.89
1841 2051 5.818678 ATCGGTGCCTACTTCCATAATAA 57.181 39.130 0.00 0.00 0.00 1.40
1844 2054 4.080807 TCAAATCGGTGCCTACTTCCATAA 60.081 41.667 0.00 0.00 0.00 1.90
1864 2074 9.070179 TGATCTCAGATTCTTTGTTCAATTCAA 57.930 29.630 0.00 0.00 0.00 2.69
1865 2075 8.625786 TGATCTCAGATTCTTTGTTCAATTCA 57.374 30.769 0.00 0.00 0.00 2.57
1866 2076 9.504710 CATGATCTCAGATTCTTTGTTCAATTC 57.495 33.333 0.00 0.00 0.00 2.17
1953 3757 9.452287 AAACATTAAAATGCTTGATAAAGGCAT 57.548 25.926 2.60 0.00 46.79 4.40
2058 3864 5.719563 TGAAGGTCCAACACATAGAGTATCA 59.280 40.000 0.00 0.00 37.82 2.15
2106 3912 1.761174 GAGGCCCACAACAGGAAGA 59.239 57.895 0.00 0.00 0.00 2.87
2146 3954 6.114767 AGAAAACAATCAAACACCAATGCTT 58.885 32.000 0.00 0.00 0.00 3.91
2419 4229 6.868864 CCAACTAGTTCATATTCATCCCTACG 59.131 42.308 4.77 0.00 0.00 3.51
2513 4353 8.275040 AGCTAAAAACAGGGTCTATGTGATTAT 58.725 33.333 0.00 0.00 0.00 1.28
2533 4373 4.039973 ACAGTACTAGCACACCAAGCTAAA 59.960 41.667 0.00 0.00 43.39 1.85
2535 4375 3.162666 ACAGTACTAGCACACCAAGCTA 58.837 45.455 0.00 0.00 43.25 3.32
2605 4445 2.825532 ACAAAACCAGCACACAGAAGTT 59.174 40.909 0.00 0.00 0.00 2.66
2845 4706 2.026262 GGAAGGAGTTCTGCCAATGGTA 60.026 50.000 0.00 0.00 41.17 3.25
2967 4850 3.055458 TGAATTGTCCTCTTATCACCGCA 60.055 43.478 0.00 0.00 0.00 5.69
2988 4871 1.271379 AGTGTTGCATTGATGGCTGTG 59.729 47.619 0.00 0.00 0.00 3.66
2989 4872 1.624336 AGTGTTGCATTGATGGCTGT 58.376 45.000 0.00 0.00 0.00 4.40
2990 4873 2.602878 GAAGTGTTGCATTGATGGCTG 58.397 47.619 0.00 0.00 0.00 4.85
3069 4952 6.408320 GGACTTCTAAGAGTATTTCCCTTCCC 60.408 46.154 0.00 0.00 0.00 3.97
3223 5110 0.530744 TGCAGCCAGTAAGACTACGG 59.469 55.000 0.00 0.00 32.87 4.02
3340 5231 7.716799 TGTTAACATTGCCATCCTAGAAAAT 57.283 32.000 3.59 0.00 0.00 1.82
3381 5274 5.057149 AGTGTTGTTCGAAAGCTCTACAAT 58.943 37.500 0.00 0.00 30.98 2.71
3382 5275 4.439057 AGTGTTGTTCGAAAGCTCTACAA 58.561 39.130 0.00 0.00 0.00 2.41
3569 5462 0.318614 GATAGAGCTGGCAGACTCGC 60.319 60.000 20.86 14.04 37.99 5.03
3671 5564 0.462759 GTTCCTCCTCCTCAATGGCG 60.463 60.000 0.00 0.00 35.26 5.69
3800 5693 0.613260 TCATAACCCTCAGCGTGCTT 59.387 50.000 0.00 0.00 0.00 3.91
3862 5755 7.117667 CCAAAATGTAAGATGTTTTTGTAGGCC 59.882 37.037 0.00 0.00 37.36 5.19
3874 5769 7.926555 ACTATCTCCGTACCAAAATGTAAGATG 59.073 37.037 0.00 0.00 0.00 2.90
3875 5770 8.019656 ACTATCTCCGTACCAAAATGTAAGAT 57.980 34.615 0.00 0.00 0.00 2.40
3884 5779 7.172868 TGTTGAATACTATCTCCGTACCAAA 57.827 36.000 0.00 0.00 0.00 3.28
3891 5786 5.352284 AGCAGTTGTTGAATACTATCTCCG 58.648 41.667 0.00 0.00 0.00 4.63
3925 5820 5.596361 TGCATTAACAAAGAGTGAAGGGAAA 59.404 36.000 0.00 0.00 0.00 3.13
3933 5830 7.147312 TCAATTTCCTGCATTAACAAAGAGTG 58.853 34.615 0.00 0.00 0.00 3.51
3939 5836 7.465353 TCATCTCAATTTCCTGCATTAACAA 57.535 32.000 0.00 0.00 0.00 2.83
3940 5837 7.465353 TTCATCTCAATTTCCTGCATTAACA 57.535 32.000 0.00 0.00 0.00 2.41
4019 5916 6.849811 CGATGATGTCAACTTGCAGATAATTC 59.150 38.462 0.00 0.00 0.00 2.17
4123 6026 6.745116 TGTGCACAGTAATACGAGCTTATAT 58.255 36.000 17.42 0.00 0.00 0.86
4128 6031 2.417379 CCTGTGCACAGTAATACGAGCT 60.417 50.000 37.55 0.00 42.27 4.09
4133 6036 3.074412 ACAAGCCTGTGCACAGTAATAC 58.926 45.455 37.55 23.56 42.27 1.89
4148 6051 4.844884 AGGAAGTTAACCTATGACAAGCC 58.155 43.478 0.88 0.00 35.84 4.35
4163 6066 4.600062 CAGTATAGCCCCAAAAGGAAGTT 58.400 43.478 0.00 0.00 38.24 2.66
4189 6096 7.201938 CCAGGAATTCCCGTAATAACTACACTA 60.202 40.741 21.22 0.00 40.87 2.74
4194 6101 6.070078 ACAACCAGGAATTCCCGTAATAACTA 60.070 38.462 21.22 0.00 40.87 2.24
4199 6106 3.352648 CACAACCAGGAATTCCCGTAAT 58.647 45.455 21.22 6.64 40.87 1.89
4245 6156 8.762645 TCAGACAGACTTCTACATAATCCAAAT 58.237 33.333 0.00 0.00 0.00 2.32
4246 6157 8.134202 TCAGACAGACTTCTACATAATCCAAA 57.866 34.615 0.00 0.00 0.00 3.28
4318 6233 2.353803 CCCTACAAGTTCCCAACTCGAG 60.354 54.545 11.84 11.84 41.91 4.04
4320 6235 1.346722 ACCCTACAAGTTCCCAACTCG 59.653 52.381 0.00 0.00 41.91 4.18
4361 6276 2.024414 ACAGGGTCTGTTTGCTGTTTC 58.976 47.619 0.00 0.00 42.59 2.78
4375 6290 5.014202 ACAGTTGAAACTAAAACACAGGGT 58.986 37.500 0.00 0.00 37.08 4.34
4378 6293 7.305474 AGAACACAGTTGAAACTAAAACACAG 58.695 34.615 0.00 0.00 37.08 3.66
4414 6399 5.643777 GGCTAAACTGTTAAGCATCAGAAGA 59.356 40.000 0.00 0.00 35.84 2.87
4415 6400 5.645497 AGGCTAAACTGTTAAGCATCAGAAG 59.355 40.000 0.00 0.00 35.84 2.85
4416 6401 5.412594 CAGGCTAAACTGTTAAGCATCAGAA 59.587 40.000 0.00 0.00 35.84 3.02
4478 6463 4.444591 GGATGGCATTGCAATTTCCCATAA 60.445 41.667 24.91 10.22 33.50 1.90
4724 6709 5.728741 AGGTCTCTTGTATCCTTCTGGAAAT 59.271 40.000 0.00 0.00 46.80 2.17
4866 6866 0.466124 GCCCTCTTAACAGATCGGCT 59.534 55.000 0.00 0.00 39.65 5.52
4890 6890 2.341846 TTTGGGTGAACTGGACTGAC 57.658 50.000 0.00 0.00 0.00 3.51
4919 6919 1.207089 CTAACATTGCCTGACCGAGGA 59.793 52.381 0.00 0.00 46.33 3.71
5066 7066 2.751259 TGATGCAACTGAATCCAAGCTC 59.249 45.455 0.00 0.00 0.00 4.09
5081 7081 0.607217 CACACTTGGAGCCTGATGCA 60.607 55.000 0.00 0.00 44.83 3.96
5186 7186 6.202188 GCTTTAAAGTTGTACTCACTGCTACA 59.798 38.462 16.38 0.00 0.00 2.74
5349 7349 4.067512 AGGGAGGCCGCTCTGAGA 62.068 66.667 8.63 0.00 0.00 3.27
5533 7534 6.598503 AGTTCAAGATCATGCCTCAATGATA 58.401 36.000 0.00 0.00 45.27 2.15
5566 7567 5.237344 GGAGCAACATGGATACTCAATGTAC 59.763 44.000 0.00 0.00 33.45 2.90
5580 7581 6.842163 AGTATAAAGAAAACGGAGCAACATG 58.158 36.000 0.00 0.00 0.00 3.21
5675 7676 1.080354 AGACCCTCCATTCGACCCA 59.920 57.895 0.00 0.00 0.00 4.51
5680 7681 0.108138 GACACCAGACCCTCCATTCG 60.108 60.000 0.00 0.00 0.00 3.34
5736 7737 1.195448 GTGTTTGCAGATCTGTGTCGG 59.805 52.381 23.38 0.00 0.00 4.79
5930 7932 2.758770 TACACCGCAACTCCAGACGC 62.759 60.000 0.00 0.00 0.00 5.19
5931 7933 0.732880 CTACACCGCAACTCCAGACG 60.733 60.000 0.00 0.00 0.00 4.18
6019 8021 4.104897 TCTCTCTAATCTAGCCCTACAGCA 59.895 45.833 0.00 0.00 34.23 4.41
6028 8030 5.964958 AGCACATCTCTCTCTAATCTAGC 57.035 43.478 0.00 0.00 0.00 3.42
6052 8054 6.231211 GGTCTTGAGAAACACAGAAGGATAA 58.769 40.000 0.00 0.00 0.00 1.75
6119 8121 1.611977 GCCAAAGTACAAGGAACCACC 59.388 52.381 0.00 0.00 39.35 4.61
6120 8122 2.034179 GTGCCAAAGTACAAGGAACCAC 59.966 50.000 0.00 0.00 0.00 4.16
6179 8182 2.363306 ACCCAAACTCACATTCAGCA 57.637 45.000 0.00 0.00 0.00 4.41
6184 8188 9.623000 GGTAATATAGTTACCCAAACTCACATT 57.377 33.333 5.82 0.00 45.64 2.71
6249 8253 2.897969 AGGGAGTGCTTTAGACGAGAAA 59.102 45.455 0.00 0.00 0.00 2.52
6282 8286 7.495934 GCATGAAAATATATAGTGGCCTCGTAT 59.504 37.037 3.32 7.57 0.00 3.06
6297 8301 8.082242 GGCGAAAGTTATTAGGCATGAAAATAT 58.918 33.333 0.00 0.00 0.00 1.28
6298 8302 7.067615 TGGCGAAAGTTATTAGGCATGAAAATA 59.932 33.333 0.00 0.00 32.43 1.40
6299 8303 6.127479 TGGCGAAAGTTATTAGGCATGAAAAT 60.127 34.615 0.00 0.00 32.43 1.82
6300 8304 5.184096 TGGCGAAAGTTATTAGGCATGAAAA 59.816 36.000 0.00 0.00 32.43 2.29
6301 8305 4.702612 TGGCGAAAGTTATTAGGCATGAAA 59.297 37.500 0.00 0.00 32.43 2.69
6302 8306 4.265893 TGGCGAAAGTTATTAGGCATGAA 58.734 39.130 0.00 0.00 32.43 2.57
6303 8307 3.879998 TGGCGAAAGTTATTAGGCATGA 58.120 40.909 0.00 0.00 32.43 3.07
6304 8308 4.836125 ATGGCGAAAGTTATTAGGCATG 57.164 40.909 8.98 0.00 44.55 4.06
6306 8310 6.952773 ATAAATGGCGAAAGTTATTAGGCA 57.047 33.333 0.59 0.59 41.46 4.75
6311 8315 9.275398 TCGGTATAATAAATGGCGAAAGTTATT 57.725 29.630 7.88 7.88 32.43 1.40
6312 8316 8.836268 TCGGTATAATAAATGGCGAAAGTTAT 57.164 30.769 0.00 0.00 0.00 1.89
6313 8317 8.659925 TTCGGTATAATAAATGGCGAAAGTTA 57.340 30.769 0.00 0.00 0.00 2.24
6314 8318 7.556733 TTCGGTATAATAAATGGCGAAAGTT 57.443 32.000 0.00 0.00 0.00 2.66
6315 8319 7.556733 TTTCGGTATAATAAATGGCGAAAGT 57.443 32.000 0.00 0.00 0.00 2.66
6316 8320 8.844441 TTTTTCGGTATAATAAATGGCGAAAG 57.156 30.769 0.00 0.00 0.00 2.62
6317 8321 8.460428 ACTTTTTCGGTATAATAAATGGCGAAA 58.540 29.630 0.00 0.00 0.00 3.46
6318 8322 7.911205 CACTTTTTCGGTATAATAAATGGCGAA 59.089 33.333 0.00 0.00 0.00 4.70
6319 8323 7.411274 CACTTTTTCGGTATAATAAATGGCGA 58.589 34.615 0.00 0.00 0.00 5.54
6320 8324 6.141685 GCACTTTTTCGGTATAATAAATGGCG 59.858 38.462 0.00 0.00 0.00 5.69
6321 8325 6.141685 CGCACTTTTTCGGTATAATAAATGGC 59.858 38.462 0.00 0.00 0.00 4.40
6322 8326 7.190871 ACGCACTTTTTCGGTATAATAAATGG 58.809 34.615 0.00 0.00 0.00 3.16
6323 8327 8.609478 AACGCACTTTTTCGGTATAATAAATG 57.391 30.769 0.00 0.00 0.00 2.32
6328 8332 8.013378 GCATATAACGCACTTTTTCGGTATAAT 58.987 33.333 3.95 0.00 42.02 1.28
6329 8333 7.346695 GCATATAACGCACTTTTTCGGTATAA 58.653 34.615 3.95 0.00 42.02 0.98
6330 8334 6.073657 GGCATATAACGCACTTTTTCGGTATA 60.074 38.462 2.53 2.53 42.62 1.47
6331 8335 5.277634 GGCATATAACGCACTTTTTCGGTAT 60.278 40.000 0.00 0.00 41.00 2.73
6332 8336 4.034279 GGCATATAACGCACTTTTTCGGTA 59.966 41.667 0.53 0.00 32.08 4.02
6333 8337 3.181504 GGCATATAACGCACTTTTTCGGT 60.182 43.478 0.53 0.00 0.00 4.69
6334 8338 3.181505 TGGCATATAACGCACTTTTTCGG 60.182 43.478 0.53 0.00 0.00 4.30
6335 8339 4.009798 TGGCATATAACGCACTTTTTCG 57.990 40.909 0.53 0.00 0.00 3.46
6336 8340 6.698359 TTTTGGCATATAACGCACTTTTTC 57.302 33.333 0.00 0.00 0.00 2.29
6359 8363 6.938030 AGAAATGTGCATCCAATGACATTTTT 59.062 30.769 19.51 15.33 43.12 1.94
6360 8364 6.370442 CAGAAATGTGCATCCAATGACATTTT 59.630 34.615 19.51 12.77 43.12 1.82
6361 8365 5.872617 CAGAAATGTGCATCCAATGACATTT 59.127 36.000 19.06 19.06 44.23 2.32
6362 8366 5.416083 CAGAAATGTGCATCCAATGACATT 58.584 37.500 0.00 0.00 39.93 2.71
6363 8367 4.142026 CCAGAAATGTGCATCCAATGACAT 60.142 41.667 0.00 0.00 34.67 3.06
6364 8368 3.193903 CCAGAAATGTGCATCCAATGACA 59.806 43.478 0.00 0.00 0.00 3.58
6365 8369 3.194116 ACCAGAAATGTGCATCCAATGAC 59.806 43.478 0.00 0.00 0.00 3.06
6366 8370 3.193903 CACCAGAAATGTGCATCCAATGA 59.806 43.478 0.00 0.00 0.00 2.57
6367 8371 3.193903 TCACCAGAAATGTGCATCCAATG 59.806 43.478 0.00 0.00 33.71 2.82
6368 8372 3.433343 TCACCAGAAATGTGCATCCAAT 58.567 40.909 0.00 0.00 33.71 3.16
6369 8373 2.874014 TCACCAGAAATGTGCATCCAA 58.126 42.857 0.00 0.00 33.71 3.53
6370 8374 2.583024 TCACCAGAAATGTGCATCCA 57.417 45.000 0.00 0.00 33.71 3.41
6371 8375 7.458409 AATATATCACCAGAAATGTGCATCC 57.542 36.000 0.00 0.00 33.71 3.51
6372 8376 9.754382 AAAAATATATCACCAGAAATGTGCATC 57.246 29.630 0.00 0.00 33.71 3.91
6373 8377 9.537192 CAAAAATATATCACCAGAAATGTGCAT 57.463 29.630 0.00 0.00 33.71 3.96
6374 8378 8.747471 TCAAAAATATATCACCAGAAATGTGCA 58.253 29.630 0.00 0.00 33.71 4.57
6375 8379 9.585099 TTCAAAAATATATCACCAGAAATGTGC 57.415 29.630 0.00 0.00 33.71 4.57
6409 8413 9.495572 ACTTCCAACTTAAAATTTTCAACAACA 57.504 25.926 6.72 0.00 0.00 3.33
6418 8422 8.652463 CGTGTCAAAACTTCCAACTTAAAATTT 58.348 29.630 0.00 0.00 0.00 1.82
6419 8423 8.030106 TCGTGTCAAAACTTCCAACTTAAAATT 58.970 29.630 0.00 0.00 0.00 1.82
6420 8424 7.540299 TCGTGTCAAAACTTCCAACTTAAAAT 58.460 30.769 0.00 0.00 0.00 1.82
6421 8425 6.910995 TCGTGTCAAAACTTCCAACTTAAAA 58.089 32.000 0.00 0.00 0.00 1.52
6422 8426 6.497785 TCGTGTCAAAACTTCCAACTTAAA 57.502 33.333 0.00 0.00 0.00 1.52
6423 8427 6.497785 TTCGTGTCAAAACTTCCAACTTAA 57.502 33.333 0.00 0.00 0.00 1.85
6424 8428 6.497785 TTTCGTGTCAAAACTTCCAACTTA 57.502 33.333 0.00 0.00 0.00 2.24
6425 8429 5.379732 TTTCGTGTCAAAACTTCCAACTT 57.620 34.783 0.00 0.00 0.00 2.66
6426 8430 5.379732 TTTTCGTGTCAAAACTTCCAACT 57.620 34.783 0.00 0.00 0.00 3.16
6427 8431 5.402867 TGTTTTTCGTGTCAAAACTTCCAAC 59.597 36.000 9.11 0.00 42.33 3.77
6428 8432 5.529791 TGTTTTTCGTGTCAAAACTTCCAA 58.470 33.333 9.11 0.00 42.33 3.53
6429 8433 5.122512 TGTTTTTCGTGTCAAAACTTCCA 57.877 34.783 9.11 0.00 42.33 3.53
6430 8434 6.455045 TTTGTTTTTCGTGTCAAAACTTCC 57.545 33.333 9.11 0.00 42.33 3.46
6431 8435 7.477112 CCATTTTGTTTTTCGTGTCAAAACTTC 59.523 33.333 9.11 0.00 42.33 3.01
6432 8436 7.041712 ACCATTTTGTTTTTCGTGTCAAAACTT 60.042 29.630 9.11 0.00 42.33 2.66
6433 8437 6.425417 ACCATTTTGTTTTTCGTGTCAAAACT 59.575 30.769 9.11 0.00 42.33 2.66
6434 8438 6.594886 ACCATTTTGTTTTTCGTGTCAAAAC 58.405 32.000 0.00 2.04 42.23 2.43
6435 8439 6.128526 GGACCATTTTGTTTTTCGTGTCAAAA 60.129 34.615 0.00 0.00 41.63 2.44
6436 8440 5.348997 GGACCATTTTGTTTTTCGTGTCAAA 59.651 36.000 0.00 0.00 0.00 2.69
6437 8441 4.865365 GGACCATTTTGTTTTTCGTGTCAA 59.135 37.500 0.00 0.00 0.00 3.18
6438 8442 4.158764 AGGACCATTTTGTTTTTCGTGTCA 59.841 37.500 0.00 0.00 0.00 3.58
6439 8443 4.502645 CAGGACCATTTTGTTTTTCGTGTC 59.497 41.667 0.00 0.00 0.00 3.67
6440 8444 4.081917 ACAGGACCATTTTGTTTTTCGTGT 60.082 37.500 0.00 0.00 0.00 4.49
6441 8445 4.429108 ACAGGACCATTTTGTTTTTCGTG 58.571 39.130 0.00 0.00 0.00 4.35
6442 8446 4.729227 ACAGGACCATTTTGTTTTTCGT 57.271 36.364 0.00 0.00 0.00 3.85
6443 8447 7.364200 TGTATACAGGACCATTTTGTTTTTCG 58.636 34.615 0.08 0.00 0.00 3.46
6444 8448 8.573035 TCTGTATACAGGACCATTTTGTTTTTC 58.427 33.333 28.33 0.00 43.91 2.29
6445 8449 8.472007 TCTGTATACAGGACCATTTTGTTTTT 57.528 30.769 28.33 0.00 43.91 1.94
6446 8450 8.472007 TTCTGTATACAGGACCATTTTGTTTT 57.528 30.769 28.33 0.00 43.91 2.43
6447 8451 8.472007 TTTCTGTATACAGGACCATTTTGTTT 57.528 30.769 28.33 0.00 43.91 2.83
6448 8452 8.522830 CATTTCTGTATACAGGACCATTTTGTT 58.477 33.333 28.33 1.88 43.91 2.83
6449 8453 7.362920 GCATTTCTGTATACAGGACCATTTTGT 60.363 37.037 28.33 4.97 43.91 2.83
6450 8454 6.974622 GCATTTCTGTATACAGGACCATTTTG 59.025 38.462 28.33 16.45 43.91 2.44
6451 8455 6.891908 AGCATTTCTGTATACAGGACCATTTT 59.108 34.615 28.33 8.83 43.91 1.82
6452 8456 6.319658 CAGCATTTCTGTATACAGGACCATTT 59.680 38.462 28.33 9.97 43.91 2.32
6453 8457 5.824624 CAGCATTTCTGTATACAGGACCATT 59.175 40.000 28.33 11.25 43.91 3.16
6454 8458 5.130975 TCAGCATTTCTGTATACAGGACCAT 59.869 40.000 28.33 11.98 43.91 3.55
6455 8459 4.469586 TCAGCATTTCTGTATACAGGACCA 59.530 41.667 28.33 10.20 43.91 4.02
6456 8460 5.023533 TCAGCATTTCTGTATACAGGACC 57.976 43.478 28.33 13.51 43.91 4.46
6457 8461 5.665459 ACTCAGCATTTCTGTATACAGGAC 58.335 41.667 28.33 11.76 43.91 3.85
6458 8462 5.939764 ACTCAGCATTTCTGTATACAGGA 57.060 39.130 28.33 20.37 43.91 3.86
6459 8463 6.573434 TGTACTCAGCATTTCTGTATACAGG 58.427 40.000 28.33 15.69 43.91 4.00
6460 8464 8.654230 ATTGTACTCAGCATTTCTGTATACAG 57.346 34.615 24.37 24.37 41.06 2.74
6461 8465 8.882736 CAATTGTACTCAGCATTTCTGTATACA 58.117 33.333 5.25 5.25 43.32 2.29
6462 8466 8.883731 ACAATTGTACTCAGCATTTCTGTATAC 58.116 33.333 9.97 0.00 43.32 1.47
6463 8467 8.882736 CACAATTGTACTCAGCATTTCTGTATA 58.117 33.333 11.53 0.00 43.32 1.47
6464 8468 7.391554 ACACAATTGTACTCAGCATTTCTGTAT 59.608 33.333 11.53 0.00 37.90 2.29
6465 8469 6.710295 ACACAATTGTACTCAGCATTTCTGTA 59.290 34.615 11.53 0.00 37.90 2.74
6466 8470 5.532406 ACACAATTGTACTCAGCATTTCTGT 59.468 36.000 11.53 0.00 37.90 3.41
6467 8471 6.005583 ACACAATTGTACTCAGCATTTCTG 57.994 37.500 11.53 0.00 37.98 3.02
6468 8472 7.744087 TTACACAATTGTACTCAGCATTTCT 57.256 32.000 11.53 0.00 37.97 2.52
6469 8473 8.970691 AATTACACAATTGTACTCAGCATTTC 57.029 30.769 11.53 0.00 37.97 2.17
6470 8474 9.762933 AAAATTACACAATTGTACTCAGCATTT 57.237 25.926 11.53 6.52 37.97 2.32
6471 8475 9.762933 AAAAATTACACAATTGTACTCAGCATT 57.237 25.926 11.53 0.84 37.97 3.56
6569 8573 9.967346 GCACTTTTTAGAATTTAGGTTCTTTCT 57.033 29.630 0.00 0.00 39.15 2.52
6570 8574 9.744468 TGCACTTTTTAGAATTTAGGTTCTTTC 57.256 29.630 0.00 0.00 39.15 2.62
6571 8575 9.750125 CTGCACTTTTTAGAATTTAGGTTCTTT 57.250 29.630 0.00 0.00 39.15 2.52
6572 8576 7.867909 GCTGCACTTTTTAGAATTTAGGTTCTT 59.132 33.333 0.00 0.00 39.15 2.52
6573 8577 7.231519 AGCTGCACTTTTTAGAATTTAGGTTCT 59.768 33.333 1.02 0.00 41.18 3.01
6574 8578 7.327032 CAGCTGCACTTTTTAGAATTTAGGTTC 59.673 37.037 0.00 0.00 0.00 3.62
6575 8579 7.147976 CAGCTGCACTTTTTAGAATTTAGGTT 58.852 34.615 0.00 0.00 0.00 3.50
6576 8580 6.265422 ACAGCTGCACTTTTTAGAATTTAGGT 59.735 34.615 15.27 0.00 0.00 3.08
6577 8581 6.583806 CACAGCTGCACTTTTTAGAATTTAGG 59.416 38.462 15.27 0.00 0.00 2.69
6578 8582 6.088616 GCACAGCTGCACTTTTTAGAATTTAG 59.911 38.462 15.27 0.00 43.62 1.85
6579 8583 5.920273 GCACAGCTGCACTTTTTAGAATTTA 59.080 36.000 15.27 0.00 43.62 1.40
6580 8584 4.746611 GCACAGCTGCACTTTTTAGAATTT 59.253 37.500 15.27 0.00 43.62 1.82
6581 8585 4.038402 AGCACAGCTGCACTTTTTAGAATT 59.962 37.500 15.27 0.00 46.97 2.17
6582 8586 3.571401 AGCACAGCTGCACTTTTTAGAAT 59.429 39.130 15.27 0.00 46.97 2.40
6583 8587 2.951642 AGCACAGCTGCACTTTTTAGAA 59.048 40.909 15.27 0.00 46.97 2.10
6584 8588 2.575532 AGCACAGCTGCACTTTTTAGA 58.424 42.857 15.27 0.00 46.97 2.10
6598 8602 3.730761 GACGCCCAAGCAGCACAG 61.731 66.667 0.00 0.00 39.83 3.66
6616 8620 4.592192 ATCGGATGGTGCGCGAGG 62.592 66.667 12.10 0.00 0.00 4.63
6617 8621 3.032609 GATCGGATGGTGCGCGAG 61.033 66.667 12.10 0.00 0.00 5.03
6618 8622 3.527427 AGATCGGATGGTGCGCGA 61.527 61.111 12.10 0.00 0.00 5.87
6619 8623 3.333189 CAGATCGGATGGTGCGCG 61.333 66.667 0.00 0.00 0.00 6.86
6620 8624 2.969238 CCAGATCGGATGGTGCGC 60.969 66.667 0.00 0.00 36.56 6.09
6621 8625 2.814604 TCCAGATCGGATGGTGCG 59.185 61.111 0.00 0.00 39.64 5.34
6631 8635 3.313750 GCGTGTGCGATCCAGATC 58.686 61.111 0.00 0.00 41.33 2.75
6641 8645 4.250431 ACAAACCTGCGCGTGTGC 62.250 61.111 8.43 0.00 37.91 4.57
6642 8646 2.052237 GACAAACCTGCGCGTGTG 60.052 61.111 8.43 3.15 0.00 3.82
6643 8647 3.636043 CGACAAACCTGCGCGTGT 61.636 61.111 8.43 1.94 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.