Multiple sequence alignment - TraesCS7B01G270000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G270000 chr7B 100.000 3583 0 0 1 3583 495205089 495201507 0.000000e+00 6617.0
1 TraesCS7B01G270000 chr7B 100.000 97 0 0 3898 3994 495201192 495201096 3.170000e-41 180.0
2 TraesCS7B01G270000 chr7D 95.466 1522 53 5 1837 3351 471326770 471325258 0.000000e+00 2414.0
3 TraesCS7B01G270000 chr7D 91.069 1254 57 13 561 1769 471328607 471327364 0.000000e+00 1644.0
4 TraesCS7B01G270000 chr7D 84.324 185 23 6 2 184 471328821 471328641 4.100000e-40 176.0
5 TraesCS7B01G270000 chr7D 84.892 139 15 3 237 370 78777579 78777716 6.960000e-28 135.0
6 TraesCS7B01G270000 chr7A 91.150 1356 57 21 1810 3136 526365246 526366567 0.000000e+00 1781.0
7 TraesCS7B01G270000 chr7A 86.240 1686 101 43 165 1769 526363368 526365003 0.000000e+00 1707.0
8 TraesCS7B01G270000 chr2B 97.468 237 6 0 3344 3580 94254047 94254283 4.810000e-109 405.0
9 TraesCS7B01G270000 chr2B 95.833 96 4 0 3899 3994 94254326 94254421 5.340000e-34 156.0
10 TraesCS7B01G270000 chr3B 95.726 234 7 2 3347 3580 601377063 601377293 1.360000e-99 374.0
11 TraesCS7B01G270000 chr3B 92.917 240 13 2 3347 3583 736323820 736323582 2.950000e-91 346.0
12 TraesCS7B01G270000 chr3B 93.814 97 6 0 3898 3994 601377336 601377432 3.220000e-31 147.0
13 TraesCS7B01G270000 chr6B 89.712 243 17 5 3347 3583 635019517 635019277 1.800000e-78 303.0
14 TraesCS7B01G270000 chr6B 81.373 102 12 6 1214 1313 695937084 695937180 4.280000e-10 76.8
15 TraesCS7B01G270000 chr4A 89.431 246 15 6 3344 3583 735519843 735519603 2.330000e-77 300.0
16 TraesCS7B01G270000 chr3D 80.153 131 21 4 1236 1365 391600408 391600282 4.250000e-15 93.5
17 TraesCS7B01G270000 chr6D 78.322 143 17 10 1214 1349 457473204 457473069 3.310000e-11 80.5
18 TraesCS7B01G270000 chr6D 80.000 110 11 8 1214 1319 457347085 457346983 1.990000e-08 71.3
19 TraesCS7B01G270000 chr4D 79.167 120 21 4 250 366 16266945 16267063 3.310000e-11 80.5
20 TraesCS7B01G270000 chr4D 79.167 120 21 4 250 366 16308035 16308153 3.310000e-11 80.5
21 TraesCS7B01G270000 chr4D 78.333 120 22 4 250 366 16348317 16348435 1.540000e-09 75.0
22 TraesCS7B01G270000 chr6A 81.373 102 12 6 1214 1313 604294924 604295020 4.280000e-10 76.8
23 TraesCS7B01G270000 chr6A 81.373 102 12 6 1214 1313 604384730 604384826 4.280000e-10 76.8
24 TraesCS7B01G270000 chr5A 80.556 108 14 6 1214 1319 531241041 531240939 4.280000e-10 76.8
25 TraesCS7B01G270000 chr2A 91.837 49 4 0 420 468 778133831 778133879 7.160000e-08 69.4
26 TraesCS7B01G270000 chr4B 86.207 58 7 1 272 329 28178258 28178314 1.200000e-05 62.1
27 TraesCS7B01G270000 chr4B 86.207 58 7 1 272 329 28181118 28181174 1.200000e-05 62.1
28 TraesCS7B01G270000 chr4B 86.207 58 7 1 272 329 28184206 28184262 1.200000e-05 62.1
29 TraesCS7B01G270000 chr4B 86.207 58 7 1 272 329 28188287 28188343 1.200000e-05 62.1
30 TraesCS7B01G270000 chr4B 94.444 36 2 0 506 541 647761821 647761786 5.580000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G270000 chr7B 495201096 495205089 3993 True 3398.500000 6617 100.000000 1 3994 2 chr7B.!!$R1 3993
1 TraesCS7B01G270000 chr7D 471325258 471328821 3563 True 1411.333333 2414 90.286333 2 3351 3 chr7D.!!$R1 3349
2 TraesCS7B01G270000 chr7A 526363368 526366567 3199 False 1744.000000 1781 88.695000 165 3136 2 chr7A.!!$F1 2971

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 609 0.251916 TCACCCCAGTTTCTATGGCG 59.748 55.0 0.0 0.0 36.43 5.69 F
933 1003 0.319900 CCTCTCTGTGTCACCGTTGG 60.320 60.0 0.0 0.0 0.00 3.77 F
934 1004 0.389391 CTCTCTGTGTCACCGTTGGT 59.611 55.0 0.0 0.0 35.62 3.67 F
2019 2653 0.460284 GTGATCGGTACAGGTGGCAG 60.460 60.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1514 1606 0.659957 GCAGCAGTACTAGCAATGGC 59.340 55.000 16.27 5.71 41.61 4.40 R
1847 2481 1.067635 CACCTTGCCCTAAATGTGCAC 60.068 52.381 10.75 10.75 34.16 4.57 R
2824 3477 1.154150 GACGTACTTGGTCCGGTCG 60.154 63.158 0.00 0.00 0.00 4.79 R
3549 4218 0.107312 CAGAGATGTTGCCCTGGGAG 60.107 60.000 19.27 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.671379 GGTTTGAGGAGTGCGGGAC 60.671 63.158 0.00 0.00 0.00 4.46
23 24 0.534203 GTTTGAGGAGTGCGGGACAA 60.534 55.000 1.61 0.00 0.00 3.18
25 26 1.691195 TTGAGGAGTGCGGGACAACA 61.691 55.000 1.61 0.00 0.00 3.33
28 29 1.961277 GGAGTGCGGGACAACACAG 60.961 63.158 1.61 0.00 37.49 3.66
30 31 0.531974 GAGTGCGGGACAACACAGAA 60.532 55.000 1.61 0.00 37.49 3.02
31 32 0.532862 AGTGCGGGACAACACAGAAG 60.533 55.000 1.61 0.00 37.49 2.85
35 36 2.563620 TGCGGGACAACACAGAAGTATA 59.436 45.455 0.00 0.00 0.00 1.47
37 38 3.187700 CGGGACAACACAGAAGTATAGC 58.812 50.000 0.00 0.00 0.00 2.97
40 41 2.603560 GACAACACAGAAGTATAGCGCC 59.396 50.000 2.29 0.00 0.00 6.53
41 42 1.933853 CAACACAGAAGTATAGCGCCC 59.066 52.381 2.29 0.00 0.00 6.13
42 43 1.191535 ACACAGAAGTATAGCGCCCA 58.808 50.000 2.29 0.00 0.00 5.36
63 64 1.812686 TTGAGGGGACAGTTCGGTCG 61.813 60.000 0.00 0.00 38.70 4.79
64 65 3.644399 GAGGGGACAGTTCGGTCGC 62.644 68.421 10.46 10.46 46.53 5.19
69 70 0.872388 GGACAGTTCGGTCGCATTTT 59.128 50.000 0.00 0.00 38.70 1.82
102 103 3.827302 ACTAACCAGACCATATAGAGCCG 59.173 47.826 0.00 0.00 0.00 5.52
111 112 2.289694 CCATATAGAGCCGGTTTGAGGG 60.290 54.545 1.90 0.00 0.00 4.30
112 113 2.170012 TATAGAGCCGGTTTGAGGGT 57.830 50.000 1.90 0.00 42.92 4.34
129 131 1.814394 GGGTGGTTGGGTCGTATTTTC 59.186 52.381 0.00 0.00 0.00 2.29
143 145 6.005583 TCGTATTTTCACGACTAGTCACTT 57.994 37.500 22.37 3.34 45.45 3.16
146 148 6.250104 CGTATTTTCACGACTAGTCACTTACC 59.750 42.308 22.37 1.34 44.69 2.85
155 157 0.608582 AGTCACTTACCGAGCCGTCT 60.609 55.000 0.00 0.00 0.00 4.18
174 176 3.586429 TCTGTGCAGACATATATGGGGA 58.414 45.455 16.96 4.77 31.41 4.81
185 187 6.491403 AGACATATATGGGGAATTTGAGTTGC 59.509 38.462 16.96 0.00 0.00 4.17
186 188 5.241506 ACATATATGGGGAATTTGAGTTGCG 59.758 40.000 16.96 0.00 0.00 4.85
188 190 0.825425 TGGGGAATTTGAGTTGCGCA 60.825 50.000 5.66 5.66 39.39 6.09
235 239 4.367450 GGATCTATGCGAAGATATCCTGC 58.633 47.826 0.00 1.82 36.33 4.85
385 404 6.981762 AAAAGACACAAAATGACAAATGCA 57.018 29.167 0.00 0.00 0.00 3.96
386 405 6.981762 AAAGACACAAAATGACAAATGCAA 57.018 29.167 0.00 0.00 0.00 4.08
387 406 6.981762 AAGACACAAAATGACAAATGCAAA 57.018 29.167 0.00 0.00 0.00 3.68
388 407 6.981762 AGACACAAAATGACAAATGCAAAA 57.018 29.167 0.00 0.00 0.00 2.44
389 408 7.375106 AGACACAAAATGACAAATGCAAAAA 57.625 28.000 0.00 0.00 0.00 1.94
390 409 7.242783 AGACACAAAATGACAAATGCAAAAAC 58.757 30.769 0.00 0.00 0.00 2.43
391 410 6.020372 ACACAAAATGACAAATGCAAAAACG 58.980 32.000 0.00 0.00 0.00 3.60
392 411 6.128445 ACACAAAATGACAAATGCAAAAACGA 60.128 30.769 0.00 0.00 0.00 3.85
393 412 6.192500 CACAAAATGACAAATGCAAAAACGAC 59.808 34.615 0.00 0.00 0.00 4.34
394 413 6.128445 ACAAAATGACAAATGCAAAAACGACA 60.128 30.769 0.00 0.00 0.00 4.35
395 414 5.388225 AATGACAAATGCAAAAACGACAC 57.612 34.783 0.00 0.00 0.00 3.67
407 426 3.944422 AAACGACACTGTTCACATGTC 57.056 42.857 0.00 10.23 39.50 3.06
444 463 7.979115 TTTTTGTTTCTCCTTGTATGTTTCG 57.021 32.000 0.00 0.00 0.00 3.46
458 477 7.680442 TGTATGTTTCGATTTTGGATCTGAA 57.320 32.000 0.00 0.00 0.00 3.02
464 483 8.763356 TGTTTCGATTTTGGATCTGAATTTTTG 58.237 29.630 0.00 0.00 0.00 2.44
467 487 7.315142 TCGATTTTGGATCTGAATTTTTGAGG 58.685 34.615 0.00 0.00 0.00 3.86
472 492 8.836268 TTTGGATCTGAATTTTTGAGGAATTG 57.164 30.769 0.00 0.00 0.00 2.32
498 518 6.920569 GACACAGGTCTTGAGAACTTTAAA 57.079 37.500 0.00 0.00 39.48 1.52
556 585 8.528044 TGAGTTTTAAAATATGGTATCACCCC 57.472 34.615 3.52 0.00 37.50 4.95
569 609 0.251916 TCACCCCAGTTTCTATGGCG 59.748 55.000 0.00 0.00 36.43 5.69
704 760 2.766828 CCCGGTAAGATCTCAGGAAGTT 59.233 50.000 0.00 0.00 0.00 2.66
715 771 1.281867 TCAGGAAGTTATGTGCCCCAG 59.718 52.381 0.00 0.00 0.00 4.45
746 803 6.307077 TCATGTTGATCGAAAACTACTACGTG 59.693 38.462 13.55 0.00 0.00 4.49
801 858 4.147322 GTACGCGCGCATGCAGTT 62.147 61.111 32.58 10.51 42.97 3.16
860 917 2.035832 GTGCACAAACCTACCAGCATTT 59.964 45.455 13.17 0.00 34.24 2.32
933 1003 0.319900 CCTCTCTGTGTCACCGTTGG 60.320 60.000 0.00 0.00 0.00 3.77
934 1004 0.389391 CTCTCTGTGTCACCGTTGGT 59.611 55.000 0.00 0.00 35.62 3.67
935 1005 1.611977 CTCTCTGTGTCACCGTTGGTA 59.388 52.381 0.00 0.00 32.11 3.25
936 1006 1.611977 TCTCTGTGTCACCGTTGGTAG 59.388 52.381 0.00 0.00 32.11 3.18
937 1007 1.340248 CTCTGTGTCACCGTTGGTAGT 59.660 52.381 0.00 0.00 32.11 2.73
938 1008 2.555325 CTCTGTGTCACCGTTGGTAGTA 59.445 50.000 0.00 0.00 32.11 1.82
1006 1083 3.186817 CAGTACCTTATCGCTACCTCGAG 59.813 52.174 5.13 5.13 42.14 4.04
1106 1195 4.474113 GTCGCTCTACCTATTTATCGTGG 58.526 47.826 0.00 0.00 0.00 4.94
1234 1326 1.299620 CGTGTTCGTGTTCGGGAGT 60.300 57.895 0.00 0.00 37.69 3.85
1527 1622 1.927174 CGTGAGTGCCATTGCTAGTAC 59.073 52.381 0.00 0.00 38.71 2.73
1592 1692 6.919721 TCAACTATTCCCTGTGTTTTAATGC 58.080 36.000 0.00 0.00 0.00 3.56
1829 2138 6.825721 ACTTTCTTGTTGCTATAGAAGATGGG 59.174 38.462 3.21 0.82 30.32 4.00
1847 2481 1.066908 GGGTGTGTGATGTGTGTTTGG 59.933 52.381 0.00 0.00 0.00 3.28
1852 2486 1.133982 TGTGATGTGTGTTTGGTGCAC 59.866 47.619 8.80 8.80 37.37 4.57
2014 2648 2.621998 CCTATTCGTGATCGGTACAGGT 59.378 50.000 0.00 0.00 37.69 4.00
2019 2653 0.460284 GTGATCGGTACAGGTGGCAG 60.460 60.000 0.00 0.00 0.00 4.85
2247 2883 5.125097 CAGAAGTACGGTTCCTAGTACATGT 59.875 44.000 2.69 2.69 43.98 3.21
2253 2889 6.630444 ACGGTTCCTAGTACATGTAGTATG 57.370 41.667 18.56 16.03 34.67 2.39
2254 2890 6.359804 ACGGTTCCTAGTACATGTAGTATGA 58.640 40.000 18.56 17.76 34.67 2.15
2255 2891 6.830324 ACGGTTCCTAGTACATGTAGTATGAA 59.170 38.462 23.68 23.68 34.67 2.57
2290 2926 4.943705 GTGAAGGAATTGAATGAGTAGGCA 59.056 41.667 0.00 0.00 0.00 4.75
2293 2937 3.201708 AGGAATTGAATGAGTAGGCAGCT 59.798 43.478 0.00 0.00 0.00 4.24
2294 2938 3.314635 GGAATTGAATGAGTAGGCAGCTG 59.685 47.826 10.11 10.11 0.00 4.24
2295 2939 2.408271 TTGAATGAGTAGGCAGCTGG 57.592 50.000 17.12 0.00 0.00 4.85
2304 2948 3.804193 GGCAGCTGGCTAACGTGC 61.804 66.667 31.40 6.63 44.01 5.34
2321 2965 2.344142 CGTGCGCCATTTGGTTTTATTC 59.656 45.455 4.18 0.00 37.57 1.75
2375 3021 6.510641 CGTTTTTAGTGAGACGTTTGATTACG 59.489 38.462 0.00 0.00 46.52 3.18
2417 3063 3.047807 GCTGTATGCTCTGGGGGCA 62.048 63.158 0.00 0.00 44.05 5.36
2628 3274 5.026121 ACTCCTACAAGATCATCAAGGACA 58.974 41.667 0.00 0.00 0.00 4.02
2824 3477 4.891037 GGAGGGCCCATCTGCAGC 62.891 72.222 27.56 0.00 34.14 5.25
3173 3842 5.191059 GCGATTAAGAGCAACTCGTTAATG 58.809 41.667 12.56 0.00 35.36 1.90
3276 3945 2.740981 CAAGCTCGCATCCTCCATATTC 59.259 50.000 0.00 0.00 0.00 1.75
3293 3962 1.779061 TTCAGAGGTTGTGGAGGGCC 61.779 60.000 0.00 0.00 0.00 5.80
3307 3976 1.600916 GGGCCAGTGTGGAGTTCAC 60.601 63.158 4.39 0.00 40.96 3.18
3310 3979 0.106708 GCCAGTGTGGAGTTCACTCA 59.893 55.000 9.18 0.00 46.20 3.41
3322 3991 2.026262 AGTTCACTCACAACCCAACAGT 60.026 45.455 0.00 0.00 0.00 3.55
3329 3998 2.186160 CAACCCAACAGTCAGCGCA 61.186 57.895 11.47 0.00 0.00 6.09
3333 4002 1.165907 CCCAACAGTCAGCGCAGAAA 61.166 55.000 11.47 0.00 0.00 2.52
3335 4004 1.220529 CAACAGTCAGCGCAGAAAGA 58.779 50.000 11.47 0.00 0.00 2.52
3336 4005 1.599071 CAACAGTCAGCGCAGAAAGAA 59.401 47.619 11.47 0.00 0.00 2.52
3348 4017 4.354587 CGCAGAAAGAAAGTTTCAGCTTT 58.645 39.130 17.65 9.32 40.94 3.51
3370 4039 5.659440 TTTTAGAGCATAAGGGGCTTTTG 57.341 39.130 0.00 0.00 42.78 2.44
3371 4040 2.149973 AGAGCATAAGGGGCTTTTGG 57.850 50.000 0.00 0.00 42.78 3.28
3372 4041 1.114627 GAGCATAAGGGGCTTTTGGG 58.885 55.000 0.00 0.00 42.78 4.12
3373 4042 0.325577 AGCATAAGGGGCTTTTGGGG 60.326 55.000 0.00 0.00 38.81 4.96
3374 4043 1.971505 GCATAAGGGGCTTTTGGGGC 61.972 60.000 0.00 0.00 0.00 5.80
3380 4049 4.777854 GGCTTTTGGGGCCCCGAT 62.778 66.667 36.00 0.00 43.49 4.18
3381 4050 2.683572 GCTTTTGGGGCCCCGATT 60.684 61.111 36.00 0.00 39.42 3.34
3382 4051 2.721167 GCTTTTGGGGCCCCGATTC 61.721 63.158 36.00 20.80 39.42 2.52
3383 4052 2.038168 TTTTGGGGCCCCGATTCC 59.962 61.111 36.00 11.78 39.42 3.01
3384 4053 2.796734 CTTTTGGGGCCCCGATTCCA 62.797 60.000 36.00 16.79 39.42 3.53
3385 4054 2.174876 TTTTGGGGCCCCGATTCCAT 62.175 55.000 36.00 0.00 39.42 3.41
3386 4055 2.174876 TTTGGGGCCCCGATTCCATT 62.175 55.000 36.00 0.00 39.42 3.16
3387 4056 2.521708 GGGGCCCCGATTCCATTG 60.522 66.667 29.50 0.00 0.00 2.82
3388 4057 3.226537 GGGCCCCGATTCCATTGC 61.227 66.667 12.23 0.00 0.00 3.56
3389 4058 2.441901 GGCCCCGATTCCATTGCA 60.442 61.111 0.00 0.00 0.00 4.08
3390 4059 2.057408 GGCCCCGATTCCATTGCAA 61.057 57.895 0.00 0.00 0.00 4.08
3391 4060 1.612395 GGCCCCGATTCCATTGCAAA 61.612 55.000 1.71 0.00 0.00 3.68
3392 4061 0.465287 GCCCCGATTCCATTGCAAAT 59.535 50.000 1.71 0.00 0.00 2.32
3393 4062 1.807377 GCCCCGATTCCATTGCAAATG 60.807 52.381 1.71 2.47 0.00 2.32
3394 4063 1.755959 CCCCGATTCCATTGCAAATGA 59.244 47.619 1.71 0.00 0.00 2.57
3395 4064 2.168106 CCCCGATTCCATTGCAAATGAA 59.832 45.455 1.71 9.85 0.00 2.57
3396 4065 3.369261 CCCCGATTCCATTGCAAATGAAA 60.369 43.478 15.34 4.27 0.00 2.69
3397 4066 3.618150 CCCGATTCCATTGCAAATGAAAC 59.382 43.478 15.34 12.48 0.00 2.78
3398 4067 3.618150 CCGATTCCATTGCAAATGAAACC 59.382 43.478 15.34 10.57 0.00 3.27
3399 4068 4.244066 CGATTCCATTGCAAATGAAACCA 58.756 39.130 15.34 0.00 0.00 3.67
3400 4069 4.091800 CGATTCCATTGCAAATGAAACCAC 59.908 41.667 15.34 8.53 0.00 4.16
3401 4070 4.412796 TTCCATTGCAAATGAAACCACA 57.587 36.364 1.71 0.00 0.00 4.17
3402 4071 4.412796 TCCATTGCAAATGAAACCACAA 57.587 36.364 1.71 0.00 0.00 3.33
3403 4072 4.774124 TCCATTGCAAATGAAACCACAAA 58.226 34.783 1.71 0.00 0.00 2.83
3404 4073 4.815308 TCCATTGCAAATGAAACCACAAAG 59.185 37.500 1.71 0.00 0.00 2.77
3405 4074 4.575645 CCATTGCAAATGAAACCACAAAGT 59.424 37.500 1.71 0.00 0.00 2.66
3406 4075 5.277442 CCATTGCAAATGAAACCACAAAGTC 60.277 40.000 1.71 0.00 0.00 3.01
3407 4076 4.734398 TGCAAATGAAACCACAAAGTCT 57.266 36.364 0.00 0.00 0.00 3.24
3408 4077 5.083533 TGCAAATGAAACCACAAAGTCTT 57.916 34.783 0.00 0.00 0.00 3.01
3409 4078 6.214191 TGCAAATGAAACCACAAAGTCTTA 57.786 33.333 0.00 0.00 0.00 2.10
3410 4079 6.039616 TGCAAATGAAACCACAAAGTCTTAC 58.960 36.000 0.00 0.00 0.00 2.34
3411 4080 6.039616 GCAAATGAAACCACAAAGTCTTACA 58.960 36.000 0.00 0.00 0.00 2.41
3412 4081 6.701400 GCAAATGAAACCACAAAGTCTTACAT 59.299 34.615 0.00 0.00 0.00 2.29
3413 4082 7.096065 GCAAATGAAACCACAAAGTCTTACATC 60.096 37.037 0.00 0.00 0.00 3.06
3414 4083 7.581213 AATGAAACCACAAAGTCTTACATCA 57.419 32.000 0.00 0.00 0.00 3.07
3415 4084 6.371809 TGAAACCACAAAGTCTTACATCAC 57.628 37.500 0.00 0.00 0.00 3.06
3416 4085 5.883115 TGAAACCACAAAGTCTTACATCACA 59.117 36.000 0.00 0.00 0.00 3.58
3417 4086 5.751243 AACCACAAAGTCTTACATCACAC 57.249 39.130 0.00 0.00 0.00 3.82
3418 4087 5.036117 ACCACAAAGTCTTACATCACACT 57.964 39.130 0.00 0.00 0.00 3.55
3419 4088 5.437060 ACCACAAAGTCTTACATCACACTT 58.563 37.500 0.00 0.00 0.00 3.16
3420 4089 5.527582 ACCACAAAGTCTTACATCACACTTC 59.472 40.000 0.00 0.00 0.00 3.01
3421 4090 5.049405 CCACAAAGTCTTACATCACACTTCC 60.049 44.000 0.00 0.00 0.00 3.46
3422 4091 5.527214 CACAAAGTCTTACATCACACTTCCA 59.473 40.000 0.00 0.00 0.00 3.53
3423 4092 6.038161 CACAAAGTCTTACATCACACTTCCAA 59.962 38.462 0.00 0.00 0.00 3.53
3424 4093 6.038271 ACAAAGTCTTACATCACACTTCCAAC 59.962 38.462 0.00 0.00 0.00 3.77
3425 4094 4.642429 AGTCTTACATCACACTTCCAACC 58.358 43.478 0.00 0.00 0.00 3.77
3426 4095 3.432252 GTCTTACATCACACTTCCAACCG 59.568 47.826 0.00 0.00 0.00 4.44
3427 4096 3.322541 TCTTACATCACACTTCCAACCGA 59.677 43.478 0.00 0.00 0.00 4.69
3428 4097 2.631160 ACATCACACTTCCAACCGAA 57.369 45.000 0.00 0.00 0.00 4.30
3436 4105 0.804989 CTTCCAACCGAAGCATGTCC 59.195 55.000 0.00 0.00 41.61 4.02
3437 4106 0.608035 TTCCAACCGAAGCATGTCCC 60.608 55.000 0.00 0.00 0.00 4.46
3438 4107 2.398554 CCAACCGAAGCATGTCCCG 61.399 63.158 0.00 0.00 0.00 5.14
3439 4108 1.375396 CAACCGAAGCATGTCCCGA 60.375 57.895 0.00 0.00 0.00 5.14
3440 4109 0.744414 CAACCGAAGCATGTCCCGAT 60.744 55.000 0.00 0.00 0.00 4.18
3441 4110 0.828022 AACCGAAGCATGTCCCGATA 59.172 50.000 0.00 0.00 0.00 2.92
3442 4111 1.048601 ACCGAAGCATGTCCCGATAT 58.951 50.000 0.00 0.00 0.00 1.63
3443 4112 1.416401 ACCGAAGCATGTCCCGATATT 59.584 47.619 0.00 0.00 0.00 1.28
3444 4113 1.800586 CCGAAGCATGTCCCGATATTG 59.199 52.381 0.00 0.00 0.00 1.90
3445 4114 1.195448 CGAAGCATGTCCCGATATTGC 59.805 52.381 0.00 0.00 0.00 3.56
3446 4115 2.221169 GAAGCATGTCCCGATATTGCA 58.779 47.619 0.00 0.00 0.00 4.08
3447 4116 2.346766 AGCATGTCCCGATATTGCAA 57.653 45.000 0.00 0.00 0.00 4.08
3448 4117 2.653726 AGCATGTCCCGATATTGCAAA 58.346 42.857 1.71 0.00 0.00 3.68
3449 4118 2.358898 AGCATGTCCCGATATTGCAAAC 59.641 45.455 1.71 0.00 0.00 2.93
3450 4119 2.543653 GCATGTCCCGATATTGCAAACC 60.544 50.000 1.71 0.00 0.00 3.27
3451 4120 2.498644 TGTCCCGATATTGCAAACCA 57.501 45.000 1.71 0.00 0.00 3.67
3452 4121 2.088423 TGTCCCGATATTGCAAACCAC 58.912 47.619 1.71 0.00 0.00 4.16
3453 4122 1.404035 GTCCCGATATTGCAAACCACC 59.596 52.381 1.71 0.00 0.00 4.61
3454 4123 1.004862 TCCCGATATTGCAAACCACCA 59.995 47.619 1.71 0.00 0.00 4.17
3455 4124 2.031120 CCCGATATTGCAAACCACCAT 58.969 47.619 1.71 0.00 0.00 3.55
3456 4125 3.117851 TCCCGATATTGCAAACCACCATA 60.118 43.478 1.71 0.00 0.00 2.74
3457 4126 3.634448 CCCGATATTGCAAACCACCATAA 59.366 43.478 1.71 0.00 0.00 1.90
3458 4127 4.098654 CCCGATATTGCAAACCACCATAAA 59.901 41.667 1.71 0.00 0.00 1.40
3459 4128 5.040635 CCGATATTGCAAACCACCATAAAC 58.959 41.667 1.71 0.00 0.00 2.01
3460 4129 5.163561 CCGATATTGCAAACCACCATAAACT 60.164 40.000 1.71 0.00 0.00 2.66
3461 4130 6.038825 CCGATATTGCAAACCACCATAAACTA 59.961 38.462 1.71 0.00 0.00 2.24
3462 4131 7.415765 CCGATATTGCAAACCACCATAAACTAA 60.416 37.037 1.71 0.00 0.00 2.24
3463 4132 7.971168 CGATATTGCAAACCACCATAAACTAAA 59.029 33.333 1.71 0.00 0.00 1.85
3464 4133 9.646427 GATATTGCAAACCACCATAAACTAAAA 57.354 29.630 1.71 0.00 0.00 1.52
3465 4134 7.722795 ATTGCAAACCACCATAAACTAAAAC 57.277 32.000 1.71 0.00 0.00 2.43
3466 4135 6.222038 TGCAAACCACCATAAACTAAAACA 57.778 33.333 0.00 0.00 0.00 2.83
3467 4136 6.821388 TGCAAACCACCATAAACTAAAACAT 58.179 32.000 0.00 0.00 0.00 2.71
3468 4137 7.952671 TGCAAACCACCATAAACTAAAACATA 58.047 30.769 0.00 0.00 0.00 2.29
3469 4138 8.421784 TGCAAACCACCATAAACTAAAACATAA 58.578 29.630 0.00 0.00 0.00 1.90
3470 4139 9.262358 GCAAACCACCATAAACTAAAACATAAA 57.738 29.630 0.00 0.00 0.00 1.40
3473 4142 9.849166 AACCACCATAAACTAAAACATAAATCG 57.151 29.630 0.00 0.00 0.00 3.34
3474 4143 7.971722 ACCACCATAAACTAAAACATAAATCGC 59.028 33.333 0.00 0.00 0.00 4.58
3475 4144 7.971168 CCACCATAAACTAAAACATAAATCGCA 59.029 33.333 0.00 0.00 0.00 5.10
3476 4145 9.515020 CACCATAAACTAAAACATAAATCGCAT 57.485 29.630 0.00 0.00 0.00 4.73
3477 4146 9.730420 ACCATAAACTAAAACATAAATCGCATC 57.270 29.630 0.00 0.00 0.00 3.91
3478 4147 9.729023 CCATAAACTAAAACATAAATCGCATCA 57.271 29.630 0.00 0.00 0.00 3.07
3480 4149 7.740519 AAACTAAAACATAAATCGCATCAGC 57.259 32.000 0.00 0.00 37.42 4.26
3481 4150 5.821204 ACTAAAACATAAATCGCATCAGCC 58.179 37.500 0.00 0.00 37.52 4.85
3482 4151 4.989279 AAAACATAAATCGCATCAGCCT 57.011 36.364 0.00 0.00 37.52 4.58
3483 4152 4.558538 AAACATAAATCGCATCAGCCTC 57.441 40.909 0.00 0.00 37.52 4.70
3484 4153 2.498167 ACATAAATCGCATCAGCCTCC 58.502 47.619 0.00 0.00 37.52 4.30
3485 4154 2.158769 ACATAAATCGCATCAGCCTCCA 60.159 45.455 0.00 0.00 37.52 3.86
3486 4155 2.245159 TAAATCGCATCAGCCTCCAG 57.755 50.000 0.00 0.00 37.52 3.86
3487 4156 1.099879 AAATCGCATCAGCCTCCAGC 61.100 55.000 0.00 0.00 44.25 4.85
3488 4157 2.955022 AATCGCATCAGCCTCCAGCC 62.955 60.000 0.00 0.00 45.47 4.85
3489 4158 4.478371 CGCATCAGCCTCCAGCCA 62.478 66.667 0.00 0.00 45.47 4.75
3490 4159 2.827642 GCATCAGCCTCCAGCCAC 60.828 66.667 0.00 0.00 45.47 5.01
3491 4160 2.513204 CATCAGCCTCCAGCCACG 60.513 66.667 0.00 0.00 45.47 4.94
3492 4161 4.479993 ATCAGCCTCCAGCCACGC 62.480 66.667 0.00 0.00 45.47 5.34
3494 4163 3.774528 CAGCCTCCAGCCACGCTA 61.775 66.667 0.00 0.00 45.47 4.26
3495 4164 3.775654 AGCCTCCAGCCACGCTAC 61.776 66.667 0.00 0.00 45.47 3.58
3496 4165 3.775654 GCCTCCAGCCACGCTACT 61.776 66.667 0.00 0.00 36.40 2.57
3497 4166 2.982130 CCTCCAGCCACGCTACTT 59.018 61.111 0.00 0.00 36.40 2.24
3498 4167 1.296715 CCTCCAGCCACGCTACTTT 59.703 57.895 0.00 0.00 36.40 2.66
3499 4168 0.321653 CCTCCAGCCACGCTACTTTT 60.322 55.000 0.00 0.00 36.40 2.27
3500 4169 1.523758 CTCCAGCCACGCTACTTTTT 58.476 50.000 0.00 0.00 36.40 1.94
3538 4207 9.661954 ATTACATTAAGAGTGATCCCTCTAAGA 57.338 33.333 8.23 0.00 40.93 2.10
3539 4208 7.595819 ACATTAAGAGTGATCCCTCTAAGAG 57.404 40.000 8.23 2.74 40.93 2.85
3540 4209 7.358263 ACATTAAGAGTGATCCCTCTAAGAGA 58.642 38.462 8.23 0.00 40.93 3.10
3541 4210 7.841729 ACATTAAGAGTGATCCCTCTAAGAGAA 59.158 37.037 8.23 0.00 40.93 2.87
3542 4211 8.869109 CATTAAGAGTGATCCCTCTAAGAGAAT 58.131 37.037 8.23 1.86 40.93 2.40
3543 4212 8.846423 TTAAGAGTGATCCCTCTAAGAGAATT 57.154 34.615 8.23 0.00 40.93 2.17
3544 4213 7.747809 AAGAGTGATCCCTCTAAGAGAATTT 57.252 36.000 8.23 0.00 40.93 1.82
3545 4214 7.360113 AGAGTGATCCCTCTAAGAGAATTTC 57.640 40.000 5.85 0.00 40.02 2.17
3546 4215 6.326323 AGAGTGATCCCTCTAAGAGAATTTCC 59.674 42.308 5.85 0.00 40.02 3.13
3547 4216 6.209026 AGTGATCCCTCTAAGAGAATTTCCT 58.791 40.000 0.00 0.00 0.00 3.36
3548 4217 7.366226 AGTGATCCCTCTAAGAGAATTTCCTA 58.634 38.462 0.00 0.00 0.00 2.94
3549 4218 7.289084 AGTGATCCCTCTAAGAGAATTTCCTAC 59.711 40.741 0.00 0.00 0.00 3.18
3550 4219 7.289084 GTGATCCCTCTAAGAGAATTTCCTACT 59.711 40.741 0.00 0.00 0.00 2.57
3551 4220 7.507616 TGATCCCTCTAAGAGAATTTCCTACTC 59.492 40.741 0.00 0.00 0.00 2.59
3552 4221 6.137559 TCCCTCTAAGAGAATTTCCTACTCC 58.862 44.000 0.00 0.00 0.00 3.85
3553 4222 5.305902 CCCTCTAAGAGAATTTCCTACTCCC 59.694 48.000 0.00 0.00 0.00 4.30
3554 4223 5.900123 CCTCTAAGAGAATTTCCTACTCCCA 59.100 44.000 0.00 0.00 0.00 4.37
3555 4224 6.041523 CCTCTAAGAGAATTTCCTACTCCCAG 59.958 46.154 0.00 0.00 0.00 4.45
3556 4225 5.900123 TCTAAGAGAATTTCCTACTCCCAGG 59.100 44.000 0.00 0.00 37.00 4.45
3557 4226 3.388913 AGAGAATTTCCTACTCCCAGGG 58.611 50.000 0.00 0.00 36.26 4.45
3558 4227 1.847088 AGAATTTCCTACTCCCAGGGC 59.153 52.381 0.00 0.00 36.26 5.19
3559 4228 1.564348 GAATTTCCTACTCCCAGGGCA 59.436 52.381 0.00 0.00 36.26 5.36
3560 4229 1.681229 ATTTCCTACTCCCAGGGCAA 58.319 50.000 0.00 0.00 36.26 4.52
3561 4230 0.696501 TTTCCTACTCCCAGGGCAAC 59.303 55.000 0.00 0.00 36.26 4.17
3562 4231 0.474854 TTCCTACTCCCAGGGCAACA 60.475 55.000 0.00 0.00 36.26 3.33
3563 4232 0.253160 TCCTACTCCCAGGGCAACAT 60.253 55.000 0.00 0.00 36.26 2.71
3564 4233 0.181350 CCTACTCCCAGGGCAACATC 59.819 60.000 0.00 0.00 39.74 3.06
3565 4234 1.207791 CTACTCCCAGGGCAACATCT 58.792 55.000 0.00 0.00 39.74 2.90
3566 4235 1.139853 CTACTCCCAGGGCAACATCTC 59.860 57.143 0.00 0.00 39.74 2.75
3567 4236 0.548682 ACTCCCAGGGCAACATCTCT 60.549 55.000 0.00 0.00 39.74 3.10
3568 4237 0.107312 CTCCCAGGGCAACATCTCTG 60.107 60.000 0.00 0.00 39.74 3.35
3569 4238 1.077212 CCCAGGGCAACATCTCTGG 60.077 63.158 2.75 2.75 44.60 3.86
3570 4239 1.687612 CCAGGGCAACATCTCTGGT 59.312 57.895 1.61 0.00 41.21 4.00
3571 4240 0.038744 CCAGGGCAACATCTCTGGTT 59.961 55.000 1.61 0.00 41.21 3.67
3572 4241 1.457346 CAGGGCAACATCTCTGGTTC 58.543 55.000 0.00 0.00 39.74 3.62
3573 4242 1.067295 AGGGCAACATCTCTGGTTCA 58.933 50.000 0.00 0.00 39.74 3.18
3574 4243 1.004044 AGGGCAACATCTCTGGTTCAG 59.996 52.381 0.00 0.00 39.74 3.02
3575 4244 0.807496 GGCAACATCTCTGGTTCAGC 59.193 55.000 0.00 0.00 0.00 4.26
3576 4245 1.527034 GCAACATCTCTGGTTCAGCA 58.473 50.000 0.00 0.00 0.00 4.41
3577 4246 1.198637 GCAACATCTCTGGTTCAGCAC 59.801 52.381 0.00 0.00 0.00 4.40
3917 4586 1.607628 GTGATCAGCATCATCCTTGCC 59.392 52.381 0.00 0.00 41.26 4.52
3918 4587 1.213430 TGATCAGCATCATCCTTGCCA 59.787 47.619 0.00 0.00 41.06 4.92
3919 4588 2.158519 TGATCAGCATCATCCTTGCCAT 60.159 45.455 0.00 0.00 41.06 4.40
3920 4589 1.977056 TCAGCATCATCCTTGCCATC 58.023 50.000 0.00 0.00 41.06 3.51
3921 4590 1.493446 TCAGCATCATCCTTGCCATCT 59.507 47.619 0.00 0.00 41.06 2.90
3922 4591 2.092049 TCAGCATCATCCTTGCCATCTT 60.092 45.455 0.00 0.00 41.06 2.40
3923 4592 2.034685 CAGCATCATCCTTGCCATCTTG 59.965 50.000 0.00 0.00 41.06 3.02
3924 4593 2.092049 AGCATCATCCTTGCCATCTTGA 60.092 45.455 0.00 0.00 41.06 3.02
3925 4594 2.891580 GCATCATCCTTGCCATCTTGAT 59.108 45.455 0.00 0.00 33.95 2.57
3926 4595 3.321111 GCATCATCCTTGCCATCTTGATT 59.679 43.478 0.00 0.00 33.95 2.57
3927 4596 4.202223 GCATCATCCTTGCCATCTTGATTT 60.202 41.667 0.00 0.00 33.95 2.17
3928 4597 4.994907 TCATCCTTGCCATCTTGATTTG 57.005 40.909 0.00 0.00 0.00 2.32
3929 4598 3.131577 TCATCCTTGCCATCTTGATTTGC 59.868 43.478 0.00 0.00 0.00 3.68
3930 4599 2.811410 TCCTTGCCATCTTGATTTGCT 58.189 42.857 0.00 0.00 0.00 3.91
3931 4600 2.756760 TCCTTGCCATCTTGATTTGCTC 59.243 45.455 0.00 0.00 0.00 4.26
3932 4601 2.159142 CCTTGCCATCTTGATTTGCTCC 60.159 50.000 0.00 0.00 0.00 4.70
3933 4602 2.219080 TGCCATCTTGATTTGCTCCA 57.781 45.000 0.00 0.00 0.00 3.86
3934 4603 1.820519 TGCCATCTTGATTTGCTCCAC 59.179 47.619 0.00 0.00 0.00 4.02
3935 4604 1.820519 GCCATCTTGATTTGCTCCACA 59.179 47.619 0.00 0.00 0.00 4.17
3936 4605 2.231964 GCCATCTTGATTTGCTCCACAA 59.768 45.455 0.00 0.00 36.13 3.33
3937 4606 3.841643 CCATCTTGATTTGCTCCACAAC 58.158 45.455 0.00 0.00 38.23 3.32
3938 4607 3.256383 CCATCTTGATTTGCTCCACAACA 59.744 43.478 0.00 0.00 38.23 3.33
3939 4608 4.081862 CCATCTTGATTTGCTCCACAACAT 60.082 41.667 0.00 0.00 38.23 2.71
3940 4609 4.771590 TCTTGATTTGCTCCACAACATC 57.228 40.909 0.00 0.00 38.23 3.06
3941 4610 4.143543 TCTTGATTTGCTCCACAACATCA 58.856 39.130 0.00 0.00 38.23 3.07
3942 4611 3.921119 TGATTTGCTCCACAACATCAC 57.079 42.857 0.00 0.00 38.23 3.06
3943 4612 3.489355 TGATTTGCTCCACAACATCACT 58.511 40.909 0.00 0.00 38.23 3.41
3944 4613 3.890756 TGATTTGCTCCACAACATCACTT 59.109 39.130 0.00 0.00 38.23 3.16
3945 4614 3.988379 TTTGCTCCACAACATCACTTC 57.012 42.857 0.00 0.00 38.23 3.01
3946 4615 2.936919 TGCTCCACAACATCACTTCT 57.063 45.000 0.00 0.00 0.00 2.85
3947 4616 2.771089 TGCTCCACAACATCACTTCTC 58.229 47.619 0.00 0.00 0.00 2.87
3948 4617 2.104622 TGCTCCACAACATCACTTCTCA 59.895 45.455 0.00 0.00 0.00 3.27
3949 4618 3.244665 TGCTCCACAACATCACTTCTCAT 60.245 43.478 0.00 0.00 0.00 2.90
3950 4619 3.373439 GCTCCACAACATCACTTCTCATC 59.627 47.826 0.00 0.00 0.00 2.92
3951 4620 4.829968 CTCCACAACATCACTTCTCATCT 58.170 43.478 0.00 0.00 0.00 2.90
3952 4621 5.233083 TCCACAACATCACTTCTCATCTT 57.767 39.130 0.00 0.00 0.00 2.40
3953 4622 5.240891 TCCACAACATCACTTCTCATCTTC 58.759 41.667 0.00 0.00 0.00 2.87
3954 4623 5.012458 TCCACAACATCACTTCTCATCTTCT 59.988 40.000 0.00 0.00 0.00 2.85
3955 4624 5.704515 CCACAACATCACTTCTCATCTTCTT 59.295 40.000 0.00 0.00 0.00 2.52
3956 4625 6.348295 CCACAACATCACTTCTCATCTTCTTG 60.348 42.308 0.00 0.00 0.00 3.02
3957 4626 6.426025 CACAACATCACTTCTCATCTTCTTGA 59.574 38.462 0.00 0.00 0.00 3.02
3958 4627 6.649973 ACAACATCACTTCTCATCTTCTTGAG 59.350 38.462 0.00 0.00 43.70 3.02
3959 4628 5.177326 ACATCACTTCTCATCTTCTTGAGC 58.823 41.667 0.00 0.00 42.37 4.26
3960 4629 3.842820 TCACTTCTCATCTTCTTGAGCG 58.157 45.455 0.00 0.00 42.37 5.03
3961 4630 2.928757 CACTTCTCATCTTCTTGAGCGG 59.071 50.000 0.00 0.00 42.37 5.52
3962 4631 1.932511 CTTCTCATCTTCTTGAGCGGC 59.067 52.381 0.00 0.00 42.37 6.53
3963 4632 1.189752 TCTCATCTTCTTGAGCGGCT 58.810 50.000 0.00 0.00 42.37 5.52
3964 4633 1.134877 TCTCATCTTCTTGAGCGGCTG 60.135 52.381 7.50 0.00 42.37 4.85
3965 4634 0.107993 TCATCTTCTTGAGCGGCTGG 60.108 55.000 7.50 0.00 0.00 4.85
3966 4635 1.094073 CATCTTCTTGAGCGGCTGGG 61.094 60.000 7.50 0.00 0.00 4.45
3967 4636 1.557269 ATCTTCTTGAGCGGCTGGGT 61.557 55.000 7.50 0.00 0.00 4.51
3968 4637 1.743252 CTTCTTGAGCGGCTGGGTC 60.743 63.158 7.50 0.00 43.52 4.46
3969 4638 3.589654 TTCTTGAGCGGCTGGGTCG 62.590 63.158 7.50 0.00 46.20 4.79
3970 4639 4.069232 CTTGAGCGGCTGGGTCGA 62.069 66.667 7.50 0.00 46.20 4.20
3971 4640 4.373116 TTGAGCGGCTGGGTCGAC 62.373 66.667 7.50 7.13 46.20 4.20
3982 4651 4.148825 GGTCGACGAGCCAGGCAT 62.149 66.667 15.80 0.00 0.00 4.40
3983 4652 2.583593 GTCGACGAGCCAGGCATC 60.584 66.667 15.80 7.26 0.00 3.91
3984 4653 2.755876 TCGACGAGCCAGGCATCT 60.756 61.111 15.80 0.00 0.00 2.90
3985 4654 2.279120 CGACGAGCCAGGCATCTC 60.279 66.667 15.80 0.97 0.00 2.75
3989 4658 4.941609 GAGCCAGGCATCTCGAAA 57.058 55.556 15.80 0.00 0.00 3.46
3990 4659 2.687842 GAGCCAGGCATCTCGAAAG 58.312 57.895 15.80 0.00 0.00 2.62
3991 4660 0.813210 GAGCCAGGCATCTCGAAAGG 60.813 60.000 15.80 0.00 0.00 3.11
3992 4661 1.221840 GCCAGGCATCTCGAAAGGA 59.778 57.895 6.55 0.00 0.00 3.36
3993 4662 0.813210 GCCAGGCATCTCGAAAGGAG 60.813 60.000 6.55 0.00 44.58 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.672356 CCGCACTCCTCAAACCCAG 60.672 63.158 0.00 0.00 0.00 4.45
11 12 0.531974 TTCTGTGTTGTCCCGCACTC 60.532 55.000 0.00 0.00 36.63 3.51
21 22 1.933853 GGGCGCTATACTTCTGTGTTG 59.066 52.381 7.64 0.00 0.00 3.33
23 24 1.191535 TGGGCGCTATACTTCTGTGT 58.808 50.000 7.64 0.00 0.00 3.72
25 26 3.118408 TCAAATGGGCGCTATACTTCTGT 60.118 43.478 7.64 0.00 0.00 3.41
28 29 2.808543 CCTCAAATGGGCGCTATACTTC 59.191 50.000 7.64 0.00 0.00 3.01
30 31 1.072331 CCCTCAAATGGGCGCTATACT 59.928 52.381 7.64 0.00 40.84 2.12
31 32 1.523758 CCCTCAAATGGGCGCTATAC 58.476 55.000 7.64 0.00 40.84 1.47
35 36 3.338250 TCCCCTCAAATGGGCGCT 61.338 61.111 7.64 0.00 45.78 5.92
37 38 1.750399 CTGTCCCCTCAAATGGGCG 60.750 63.158 0.00 0.00 45.78 6.13
40 41 1.453155 CGAACTGTCCCCTCAAATGG 58.547 55.000 0.00 0.00 0.00 3.16
41 42 1.271379 ACCGAACTGTCCCCTCAAATG 60.271 52.381 0.00 0.00 0.00 2.32
42 43 1.003233 GACCGAACTGTCCCCTCAAAT 59.997 52.381 0.00 0.00 0.00 2.32
63 64 0.593128 AGTGACCAGTCGCAAAATGC 59.407 50.000 13.42 0.00 42.23 3.56
64 65 3.810373 GTTAGTGACCAGTCGCAAAATG 58.190 45.455 13.42 0.00 42.23 2.32
98 99 2.763645 AACCACCCTCAAACCGGCT 61.764 57.895 0.00 0.00 0.00 5.52
102 103 0.826256 GACCCAACCACCCTCAAACC 60.826 60.000 0.00 0.00 0.00 3.27
111 112 2.096119 CGTGAAAATACGACCCAACCAC 60.096 50.000 0.00 0.00 46.46 4.16
112 113 2.144730 CGTGAAAATACGACCCAACCA 58.855 47.619 0.00 0.00 46.46 3.67
129 131 2.475852 GCTCGGTAAGTGACTAGTCGTG 60.476 54.545 17.85 6.94 0.00 4.35
135 137 1.089920 GACGGCTCGGTAAGTGACTA 58.910 55.000 0.00 0.00 0.00 2.59
136 138 0.608582 AGACGGCTCGGTAAGTGACT 60.609 55.000 0.00 0.00 0.00 3.41
137 139 0.456312 CAGACGGCTCGGTAAGTGAC 60.456 60.000 0.00 0.00 0.00 3.67
143 145 2.986979 TGCACAGACGGCTCGGTA 60.987 61.111 0.00 0.00 0.00 4.02
146 148 2.807045 GTCTGCACAGACGGCTCG 60.807 66.667 14.56 0.00 46.93 5.03
155 157 4.999469 ATTCCCCATATATGTCTGCACA 57.001 40.909 11.73 0.00 36.78 4.57
169 171 0.825425 TGCGCAACTCAAATTCCCCA 60.825 50.000 8.16 0.00 0.00 4.96
174 176 0.670162 ACAGCTGCGCAACTCAAATT 59.330 45.000 15.27 0.00 0.00 1.82
207 209 2.307768 TCTTCGCATAGATCCGACCTT 58.692 47.619 0.00 0.00 32.60 3.50
210 212 4.336993 AGGATATCTTCGCATAGATCCGAC 59.663 45.833 2.05 0.00 36.34 4.79
211 213 4.336713 CAGGATATCTTCGCATAGATCCGA 59.663 45.833 2.05 0.00 36.34 4.55
212 214 4.605968 CAGGATATCTTCGCATAGATCCG 58.394 47.826 2.05 0.00 36.34 4.18
213 215 4.367450 GCAGGATATCTTCGCATAGATCC 58.633 47.826 2.05 0.00 36.34 3.36
214 216 4.041049 CGCAGGATATCTTCGCATAGATC 58.959 47.826 2.05 0.00 36.34 2.75
215 217 3.696548 TCGCAGGATATCTTCGCATAGAT 59.303 43.478 2.05 3.38 38.41 1.98
222 226 3.850122 TGGTATCGCAGGATATCTTCG 57.150 47.619 2.05 4.33 37.20 3.79
275 287 9.467258 TGAACATTCACAGAAAAATTCAGATTC 57.533 29.630 0.00 0.00 31.01 2.52
329 343 9.554724 AATGTGTGTTTCGTATTTGAATATGAC 57.445 29.630 5.39 0.00 36.81 3.06
333 347 9.952188 TTTCAATGTGTGTTTCGTATTTGAATA 57.048 25.926 0.00 0.00 0.00 1.75
372 391 5.580297 AGTGTCGTTTTTGCATTTGTCATTT 59.420 32.000 0.00 0.00 0.00 2.32
380 399 3.857093 GTGAACAGTGTCGTTTTTGCATT 59.143 39.130 0.00 0.00 0.00 3.56
381 400 3.119673 TGTGAACAGTGTCGTTTTTGCAT 60.120 39.130 0.00 0.00 0.00 3.96
382 401 2.226674 TGTGAACAGTGTCGTTTTTGCA 59.773 40.909 0.00 0.00 0.00 4.08
383 402 2.857618 TGTGAACAGTGTCGTTTTTGC 58.142 42.857 0.00 0.00 0.00 3.68
384 403 4.411327 ACATGTGAACAGTGTCGTTTTTG 58.589 39.130 0.00 0.00 0.00 2.44
385 404 4.658071 GACATGTGAACAGTGTCGTTTTT 58.342 39.130 1.15 0.00 33.73 1.94
386 405 4.273005 GACATGTGAACAGTGTCGTTTT 57.727 40.909 1.15 0.00 33.73 2.43
387 406 3.944422 GACATGTGAACAGTGTCGTTT 57.056 42.857 1.15 0.00 33.73 3.60
391 410 3.494626 ACAATCGACATGTGAACAGTGTC 59.505 43.478 1.15 12.27 39.02 3.67
392 411 3.466836 ACAATCGACATGTGAACAGTGT 58.533 40.909 1.15 0.00 0.00 3.55
393 412 3.742882 AGACAATCGACATGTGAACAGTG 59.257 43.478 1.15 0.00 0.00 3.66
394 413 3.995199 AGACAATCGACATGTGAACAGT 58.005 40.909 1.15 0.00 0.00 3.55
395 414 4.997905 AAGACAATCGACATGTGAACAG 57.002 40.909 1.15 0.00 0.00 3.16
421 440 7.323049 TCGAAACATACAAGGAGAAACAAAA 57.677 32.000 0.00 0.00 0.00 2.44
422 441 6.928979 TCGAAACATACAAGGAGAAACAAA 57.071 33.333 0.00 0.00 0.00 2.83
423 442 7.504924 AATCGAAACATACAAGGAGAAACAA 57.495 32.000 0.00 0.00 0.00 2.83
424 443 7.504924 AAATCGAAACATACAAGGAGAAACA 57.495 32.000 0.00 0.00 0.00 2.83
439 458 8.977505 TCAAAAATTCAGATCCAAAATCGAAAC 58.022 29.630 0.00 0.00 0.00 2.78
444 463 9.662947 ATTCCTCAAAAATTCAGATCCAAAATC 57.337 29.630 0.00 0.00 0.00 2.17
458 477 6.777580 ACCTGTGTCTACAATTCCTCAAAAAT 59.222 34.615 0.00 0.00 36.14 1.82
544 566 4.104738 CCATAGAAACTGGGGTGATACCAT 59.895 45.833 0.00 0.00 41.02 3.55
553 582 2.180204 CGCGCCATAGAAACTGGGG 61.180 63.158 0.00 2.32 46.49 4.96
554 583 2.823829 GCGCGCCATAGAAACTGGG 61.824 63.158 23.24 0.00 34.16 4.45
555 584 2.709475 GCGCGCCATAGAAACTGG 59.291 61.111 23.24 0.00 36.81 4.00
556 585 2.709475 GGCGCGCCATAGAAACTG 59.291 61.111 43.55 0.00 35.81 3.16
569 609 2.754995 GCCTGTTGCTCTTAGGCGC 61.755 63.158 0.00 0.00 46.47 6.53
599 639 1.661617 CACTTGACCAAACGTTCGTCA 59.338 47.619 21.05 21.05 34.80 4.35
704 760 0.030195 TGAGGGATCTGGGGCACATA 60.030 55.000 0.00 0.00 0.00 2.29
715 771 4.878397 AGTTTTCGATCAACATGAGGGATC 59.122 41.667 0.00 7.73 35.28 3.36
801 858 5.465532 GATCTGGAGATCTTCATGCAGTA 57.534 43.478 3.55 0.00 45.60 2.74
854 911 1.299541 CGTCGGGCTGATTAAATGCT 58.700 50.000 0.00 0.00 0.00 3.79
860 917 4.136511 TGCGCGTCGGGCTGATTA 62.137 61.111 30.70 11.13 42.10 1.75
880 950 0.251634 GCAGAAGAGGTCAAGAGGGG 59.748 60.000 0.00 0.00 0.00 4.79
933 1003 5.191426 TCCATGACACAGAGGTACTACTAC 58.809 45.833 0.00 0.00 41.55 2.73
934 1004 5.045066 ACTCCATGACACAGAGGTACTACTA 60.045 44.000 0.00 0.00 41.55 1.82
935 1005 4.263994 ACTCCATGACACAGAGGTACTACT 60.264 45.833 0.00 0.00 41.55 2.57
936 1006 4.017808 ACTCCATGACACAGAGGTACTAC 58.982 47.826 0.00 0.00 41.55 2.73
937 1007 4.317530 ACTCCATGACACAGAGGTACTA 57.682 45.455 0.00 0.00 41.55 1.82
966 1036 2.229784 ACTGGAACTAACGGTAACTCGG 59.770 50.000 0.00 0.00 0.00 4.63
1006 1083 1.866471 GCCGGCAGTAACCAAACAAAC 60.866 52.381 24.80 0.00 0.00 2.93
1075 1164 2.745100 TAGAGCGACGCCACGACT 60.745 61.111 17.79 10.73 35.09 4.18
1106 1195 1.491563 CAGCTTCGCACCGTGTTAC 59.508 57.895 0.00 0.00 0.00 2.50
1164 1253 3.997400 CTCCTCCCGACCGCTCTGA 62.997 68.421 0.00 0.00 0.00 3.27
1342 1434 2.032834 ATGGTGTTGCGGCCGTTA 59.967 55.556 28.70 14.00 0.00 3.18
1498 1590 2.421739 GCACTCACGGTGTCCTGT 59.578 61.111 8.17 1.10 46.86 4.00
1514 1606 0.659957 GCAGCAGTACTAGCAATGGC 59.340 55.000 16.27 5.71 41.61 4.40
1527 1622 2.351157 GCAACCAAGTAAAGAGCAGCAG 60.351 50.000 0.00 0.00 0.00 4.24
1603 1703 7.042791 ACAAAAGTTGAATTTTTAGGATGCGTG 60.043 33.333 0.00 0.00 30.01 5.34
1792 1904 6.018994 AGCAACAAGAAAGTTTCAGTACGTAG 60.019 38.462 17.65 6.02 0.00 3.51
1793 1905 5.813672 AGCAACAAGAAAGTTTCAGTACGTA 59.186 36.000 17.65 0.00 0.00 3.57
1794 1906 4.634443 AGCAACAAGAAAGTTTCAGTACGT 59.366 37.500 17.65 0.00 0.00 3.57
1795 1907 5.156804 AGCAACAAGAAAGTTTCAGTACG 57.843 39.130 17.65 10.80 0.00 3.67
1796 1908 9.204570 TCTATAGCAACAAGAAAGTTTCAGTAC 57.795 33.333 17.65 10.79 0.00 2.73
1798 1910 8.677148 TTCTATAGCAACAAGAAAGTTTCAGT 57.323 30.769 17.65 12.22 0.00 3.41
1799 1911 8.993121 TCTTCTATAGCAACAAGAAAGTTTCAG 58.007 33.333 17.65 11.62 0.00 3.02
1800 1912 8.902540 TCTTCTATAGCAACAAGAAAGTTTCA 57.097 30.769 17.65 0.00 0.00 2.69
1801 1913 9.766277 CATCTTCTATAGCAACAAGAAAGTTTC 57.234 33.333 7.57 7.57 0.00 2.78
1802 1914 8.734386 CCATCTTCTATAGCAACAAGAAAGTTT 58.266 33.333 5.89 0.00 0.00 2.66
1804 1916 6.825721 CCCATCTTCTATAGCAACAAGAAAGT 59.174 38.462 5.89 0.00 0.00 2.66
1805 1917 6.825721 ACCCATCTTCTATAGCAACAAGAAAG 59.174 38.462 5.89 3.20 0.00 2.62
1807 1919 6.115446 CACCCATCTTCTATAGCAACAAGAA 58.885 40.000 5.89 0.00 0.00 2.52
1812 2119 4.572389 CACACACCCATCTTCTATAGCAAC 59.428 45.833 0.00 0.00 0.00 4.17
1814 2121 4.030216 TCACACACCCATCTTCTATAGCA 58.970 43.478 0.00 0.00 0.00 3.49
1829 2138 2.796304 CACCAAACACACATCACACAC 58.204 47.619 0.00 0.00 0.00 3.82
1847 2481 1.067635 CACCTTGCCCTAAATGTGCAC 60.068 52.381 10.75 10.75 34.16 4.57
1852 2486 2.094545 GCTCAACACCTTGCCCTAAATG 60.095 50.000 0.00 0.00 0.00 2.32
2014 2648 2.997315 AGCAGGTAGTCGCTGCCA 60.997 61.111 14.27 0.00 44.38 4.92
2019 2653 1.473278 AGTAGTTGAGCAGGTAGTCGC 59.527 52.381 0.00 0.00 0.00 5.19
2155 2789 5.178438 GGAAATGCTCTGTATAGTAAGCAGC 59.822 44.000 8.49 0.71 46.89 5.25
2253 2889 9.480053 TCAATTCCTTCACTTGATTTTCATTTC 57.520 29.630 0.00 0.00 0.00 2.17
2254 2890 9.835389 TTCAATTCCTTCACTTGATTTTCATTT 57.165 25.926 0.00 0.00 0.00 2.32
2272 2908 3.314635 CAGCTGCCTACTCATTCAATTCC 59.685 47.826 0.00 0.00 0.00 3.01
2295 2939 1.514014 CCAAATGGCGCACGTTAGC 60.514 57.895 10.83 3.59 0.00 3.09
2304 2948 4.793216 CGAGAAGAATAAAACCAAATGGCG 59.207 41.667 0.00 0.00 39.32 5.69
2375 3021 1.866237 CACACACGTACATGGTGCC 59.134 57.895 0.00 0.00 38.98 5.01
2417 3063 5.310409 TGGAGAAGATCACAAACTTCCTT 57.690 39.130 0.00 0.00 42.09 3.36
2600 3246 3.706594 TGATGATCTTGTAGGAGTCCACC 59.293 47.826 12.86 1.16 0.00 4.61
2603 3249 4.651503 TCCTTGATGATCTTGTAGGAGTCC 59.348 45.833 0.00 0.00 0.00 3.85
2628 3274 1.668826 TTCCTTGGGTGGTCTAGCAT 58.331 50.000 0.00 0.00 0.00 3.79
2824 3477 1.154150 GACGTACTTGGTCCGGTCG 60.154 63.158 0.00 0.00 0.00 4.79
2970 3623 6.120378 TGCTAGTGTCTCTGTTTATACTCG 57.880 41.667 0.00 0.00 0.00 4.18
3057 3726 2.872557 CTGCATTGCCAGGTCACG 59.127 61.111 6.12 0.00 0.00 4.35
3242 3911 2.749441 GCTTGCTGGGAGCTCCAC 60.749 66.667 33.29 22.31 42.97 4.02
3276 3945 2.352805 GGCCCTCCACAACCTCTG 59.647 66.667 0.00 0.00 0.00 3.35
3307 3976 0.947244 GCTGACTGTTGGGTTGTGAG 59.053 55.000 0.00 0.00 0.00 3.51
3310 3979 2.186826 GCGCTGACTGTTGGGTTGT 61.187 57.895 0.00 0.00 0.00 3.32
3322 3991 2.942376 TGAAACTTTCTTTCTGCGCTGA 59.058 40.909 13.46 13.46 0.00 4.26
3348 4017 4.466015 CCAAAAGCCCCTTATGCTCTAAAA 59.534 41.667 0.00 0.00 38.34 1.52
3351 4020 2.091885 CCCAAAAGCCCCTTATGCTCTA 60.092 50.000 0.00 0.00 38.34 2.43
3352 4021 1.342374 CCCAAAAGCCCCTTATGCTCT 60.342 52.381 0.00 0.00 38.34 4.09
3353 4022 1.114627 CCCAAAAGCCCCTTATGCTC 58.885 55.000 0.00 0.00 38.34 4.26
3354 4023 0.325577 CCCCAAAAGCCCCTTATGCT 60.326 55.000 0.00 0.00 41.89 3.79
3355 4024 1.971505 GCCCCAAAAGCCCCTTATGC 61.972 60.000 0.00 0.00 0.00 3.14
3356 4025 1.337384 GGCCCCAAAAGCCCCTTATG 61.337 60.000 0.00 0.00 45.16 1.90
3357 4026 1.002921 GGCCCCAAAAGCCCCTTAT 59.997 57.895 0.00 0.00 45.16 1.73
3358 4027 2.447920 GGCCCCAAAAGCCCCTTA 59.552 61.111 0.00 0.00 45.16 2.69
3364 4033 2.683572 AATCGGGGCCCCAAAAGC 60.684 61.111 40.06 12.88 35.37 3.51
3365 4034 2.058001 GGAATCGGGGCCCCAAAAG 61.058 63.158 40.06 24.03 35.37 2.27
3366 4035 2.038168 GGAATCGGGGCCCCAAAA 59.962 61.111 40.06 25.00 35.37 2.44
3367 4036 2.174876 AATGGAATCGGGGCCCCAAA 62.175 55.000 40.06 27.75 35.37 3.28
3368 4037 2.631525 AATGGAATCGGGGCCCCAA 61.632 57.895 40.06 26.05 35.37 4.12
3369 4038 3.026847 AATGGAATCGGGGCCCCA 61.027 61.111 40.06 26.84 35.37 4.96
3370 4039 2.521708 CAATGGAATCGGGGCCCC 60.522 66.667 33.22 33.22 0.00 5.80
3371 4040 3.226537 GCAATGGAATCGGGGCCC 61.227 66.667 15.76 15.76 0.00 5.80
3372 4041 1.612395 TTTGCAATGGAATCGGGGCC 61.612 55.000 0.00 0.00 0.00 5.80
3373 4042 0.465287 ATTTGCAATGGAATCGGGGC 59.535 50.000 0.00 0.00 0.00 5.80
3374 4043 1.755959 TCATTTGCAATGGAATCGGGG 59.244 47.619 0.00 0.00 0.00 5.73
3375 4044 3.523606 TTCATTTGCAATGGAATCGGG 57.476 42.857 0.00 0.00 0.00 5.14
3376 4045 3.618150 GGTTTCATTTGCAATGGAATCGG 59.382 43.478 12.39 0.00 0.00 4.18
3377 4046 4.091800 GTGGTTTCATTTGCAATGGAATCG 59.908 41.667 12.39 0.00 0.00 3.34
3378 4047 4.996122 TGTGGTTTCATTTGCAATGGAATC 59.004 37.500 12.39 11.51 0.00 2.52
3379 4048 4.970711 TGTGGTTTCATTTGCAATGGAAT 58.029 34.783 12.39 0.00 0.00 3.01
3380 4049 4.412796 TGTGGTTTCATTTGCAATGGAA 57.587 36.364 0.00 4.50 0.00 3.53
3381 4050 4.412796 TTGTGGTTTCATTTGCAATGGA 57.587 36.364 0.00 0.00 0.00 3.41
3382 4051 4.575645 ACTTTGTGGTTTCATTTGCAATGG 59.424 37.500 0.00 0.00 0.00 3.16
3383 4052 5.524646 AGACTTTGTGGTTTCATTTGCAATG 59.475 36.000 0.00 1.04 0.00 2.82
3384 4053 5.673514 AGACTTTGTGGTTTCATTTGCAAT 58.326 33.333 0.00 0.00 0.00 3.56
3385 4054 5.083533 AGACTTTGTGGTTTCATTTGCAA 57.916 34.783 0.00 0.00 0.00 4.08
3386 4055 4.734398 AGACTTTGTGGTTTCATTTGCA 57.266 36.364 0.00 0.00 0.00 4.08
3387 4056 6.039616 TGTAAGACTTTGTGGTTTCATTTGC 58.960 36.000 0.00 0.00 0.00 3.68
3388 4057 7.920151 TGATGTAAGACTTTGTGGTTTCATTTG 59.080 33.333 0.00 0.00 0.00 2.32
3389 4058 7.920682 GTGATGTAAGACTTTGTGGTTTCATTT 59.079 33.333 0.00 0.00 0.00 2.32
3390 4059 7.068103 TGTGATGTAAGACTTTGTGGTTTCATT 59.932 33.333 0.00 0.00 0.00 2.57
3391 4060 6.545666 TGTGATGTAAGACTTTGTGGTTTCAT 59.454 34.615 0.00 0.00 0.00 2.57
3392 4061 5.883115 TGTGATGTAAGACTTTGTGGTTTCA 59.117 36.000 0.00 0.00 0.00 2.69
3393 4062 6.038271 AGTGTGATGTAAGACTTTGTGGTTTC 59.962 38.462 0.00 0.00 0.00 2.78
3394 4063 5.885912 AGTGTGATGTAAGACTTTGTGGTTT 59.114 36.000 0.00 0.00 0.00 3.27
3395 4064 5.437060 AGTGTGATGTAAGACTTTGTGGTT 58.563 37.500 0.00 0.00 0.00 3.67
3396 4065 5.036117 AGTGTGATGTAAGACTTTGTGGT 57.964 39.130 0.00 0.00 0.00 4.16
3397 4066 5.049405 GGAAGTGTGATGTAAGACTTTGTGG 60.049 44.000 0.00 0.00 0.00 4.17
3398 4067 5.527214 TGGAAGTGTGATGTAAGACTTTGTG 59.473 40.000 0.00 0.00 0.00 3.33
3399 4068 5.680619 TGGAAGTGTGATGTAAGACTTTGT 58.319 37.500 0.00 0.00 0.00 2.83
3400 4069 6.430451 GTTGGAAGTGTGATGTAAGACTTTG 58.570 40.000 0.00 0.00 0.00 2.77
3401 4070 5.531287 GGTTGGAAGTGTGATGTAAGACTTT 59.469 40.000 0.00 0.00 0.00 2.66
3402 4071 5.063880 GGTTGGAAGTGTGATGTAAGACTT 58.936 41.667 0.00 0.00 0.00 3.01
3403 4072 4.642429 GGTTGGAAGTGTGATGTAAGACT 58.358 43.478 0.00 0.00 0.00 3.24
3404 4073 3.432252 CGGTTGGAAGTGTGATGTAAGAC 59.568 47.826 0.00 0.00 0.00 3.01
3405 4074 3.322541 TCGGTTGGAAGTGTGATGTAAGA 59.677 43.478 0.00 0.00 0.00 2.10
3406 4075 3.659786 TCGGTTGGAAGTGTGATGTAAG 58.340 45.455 0.00 0.00 0.00 2.34
3407 4076 3.755112 TCGGTTGGAAGTGTGATGTAA 57.245 42.857 0.00 0.00 0.00 2.41
3408 4077 3.659786 CTTCGGTTGGAAGTGTGATGTA 58.340 45.455 0.00 0.00 45.82 2.29
3409 4078 2.494059 CTTCGGTTGGAAGTGTGATGT 58.506 47.619 0.00 0.00 45.82 3.06
3418 4087 0.608035 GGGACATGCTTCGGTTGGAA 60.608 55.000 0.00 0.00 0.00 3.53
3419 4088 1.002624 GGGACATGCTTCGGTTGGA 60.003 57.895 0.00 0.00 0.00 3.53
3420 4089 2.398554 CGGGACATGCTTCGGTTGG 61.399 63.158 0.00 0.00 0.00 3.77
3421 4090 0.744414 ATCGGGACATGCTTCGGTTG 60.744 55.000 0.00 0.00 0.00 3.77
3422 4091 0.828022 TATCGGGACATGCTTCGGTT 59.172 50.000 0.00 0.00 0.00 4.44
3423 4092 1.048601 ATATCGGGACATGCTTCGGT 58.951 50.000 0.00 0.00 0.00 4.69
3424 4093 1.800586 CAATATCGGGACATGCTTCGG 59.199 52.381 0.00 0.00 0.00 4.30
3425 4094 1.195448 GCAATATCGGGACATGCTTCG 59.805 52.381 0.00 0.00 34.29 3.79
3426 4095 2.221169 TGCAATATCGGGACATGCTTC 58.779 47.619 0.00 0.00 37.86 3.86
3427 4096 2.346766 TGCAATATCGGGACATGCTT 57.653 45.000 0.00 0.00 37.86 3.91
3428 4097 2.346766 TTGCAATATCGGGACATGCT 57.653 45.000 0.00 0.00 37.86 3.79
3429 4098 2.543653 GGTTTGCAATATCGGGACATGC 60.544 50.000 0.00 0.00 37.52 4.06
3430 4099 2.687425 TGGTTTGCAATATCGGGACATG 59.313 45.455 0.00 0.00 0.00 3.21
3431 4100 2.687935 GTGGTTTGCAATATCGGGACAT 59.312 45.455 0.00 0.00 0.00 3.06
3432 4101 2.088423 GTGGTTTGCAATATCGGGACA 58.912 47.619 0.00 0.00 0.00 4.02
3433 4102 1.404035 GGTGGTTTGCAATATCGGGAC 59.596 52.381 0.00 0.00 0.00 4.46
3434 4103 1.004862 TGGTGGTTTGCAATATCGGGA 59.995 47.619 0.00 0.00 0.00 5.14
3435 4104 1.468985 TGGTGGTTTGCAATATCGGG 58.531 50.000 0.00 0.00 0.00 5.14
3436 4105 4.909696 TTATGGTGGTTTGCAATATCGG 57.090 40.909 0.00 0.00 0.00 4.18
3437 4106 5.890334 AGTTTATGGTGGTTTGCAATATCG 58.110 37.500 0.00 0.00 0.00 2.92
3438 4107 9.646427 TTTTAGTTTATGGTGGTTTGCAATATC 57.354 29.630 0.00 0.00 0.00 1.63
3439 4108 9.430623 GTTTTAGTTTATGGTGGTTTGCAATAT 57.569 29.630 0.00 0.00 0.00 1.28
3440 4109 8.421784 TGTTTTAGTTTATGGTGGTTTGCAATA 58.578 29.630 0.00 0.00 0.00 1.90
3441 4110 7.275920 TGTTTTAGTTTATGGTGGTTTGCAAT 58.724 30.769 0.00 0.00 0.00 3.56
3442 4111 6.640518 TGTTTTAGTTTATGGTGGTTTGCAA 58.359 32.000 0.00 0.00 0.00 4.08
3443 4112 6.222038 TGTTTTAGTTTATGGTGGTTTGCA 57.778 33.333 0.00 0.00 0.00 4.08
3444 4113 8.819643 TTATGTTTTAGTTTATGGTGGTTTGC 57.180 30.769 0.00 0.00 0.00 3.68
3447 4116 9.849166 CGATTTATGTTTTAGTTTATGGTGGTT 57.151 29.630 0.00 0.00 0.00 3.67
3448 4117 7.971722 GCGATTTATGTTTTAGTTTATGGTGGT 59.028 33.333 0.00 0.00 0.00 4.16
3449 4118 7.971168 TGCGATTTATGTTTTAGTTTATGGTGG 59.029 33.333 0.00 0.00 0.00 4.61
3450 4119 8.903570 TGCGATTTATGTTTTAGTTTATGGTG 57.096 30.769 0.00 0.00 0.00 4.17
3451 4120 9.730420 GATGCGATTTATGTTTTAGTTTATGGT 57.270 29.630 0.00 0.00 0.00 3.55
3452 4121 9.729023 TGATGCGATTTATGTTTTAGTTTATGG 57.271 29.630 0.00 0.00 0.00 2.74
3454 4123 9.450807 GCTGATGCGATTTATGTTTTAGTTTAT 57.549 29.630 0.00 0.00 0.00 1.40
3455 4124 7.913297 GGCTGATGCGATTTATGTTTTAGTTTA 59.087 33.333 0.00 0.00 40.82 2.01
3456 4125 6.751888 GGCTGATGCGATTTATGTTTTAGTTT 59.248 34.615 0.00 0.00 40.82 2.66
3457 4126 6.095440 AGGCTGATGCGATTTATGTTTTAGTT 59.905 34.615 0.00 0.00 40.82 2.24
3458 4127 5.590259 AGGCTGATGCGATTTATGTTTTAGT 59.410 36.000 0.00 0.00 40.82 2.24
3459 4128 6.064846 AGGCTGATGCGATTTATGTTTTAG 57.935 37.500 0.00 0.00 40.82 1.85
3460 4129 5.008613 GGAGGCTGATGCGATTTATGTTTTA 59.991 40.000 0.00 0.00 40.82 1.52
3461 4130 4.202050 GGAGGCTGATGCGATTTATGTTTT 60.202 41.667 0.00 0.00 40.82 2.43
3462 4131 3.316308 GGAGGCTGATGCGATTTATGTTT 59.684 43.478 0.00 0.00 40.82 2.83
3463 4132 2.880890 GGAGGCTGATGCGATTTATGTT 59.119 45.455 0.00 0.00 40.82 2.71
3464 4133 2.158769 TGGAGGCTGATGCGATTTATGT 60.159 45.455 0.00 0.00 40.82 2.29
3465 4134 2.483106 CTGGAGGCTGATGCGATTTATG 59.517 50.000 0.00 0.00 40.82 1.90
3466 4135 2.775890 CTGGAGGCTGATGCGATTTAT 58.224 47.619 0.00 0.00 40.82 1.40
3467 4136 1.811558 GCTGGAGGCTGATGCGATTTA 60.812 52.381 0.00 0.00 40.82 1.40
3468 4137 1.099879 GCTGGAGGCTGATGCGATTT 61.100 55.000 0.00 0.00 40.82 2.17
3469 4138 1.525535 GCTGGAGGCTGATGCGATT 60.526 57.895 0.00 0.00 40.82 3.34
3470 4139 2.110627 GCTGGAGGCTGATGCGAT 59.889 61.111 0.00 0.00 40.82 4.58
3471 4140 4.166888 GGCTGGAGGCTGATGCGA 62.167 66.667 0.00 0.00 41.46 5.10
3472 4141 4.478371 TGGCTGGAGGCTGATGCG 62.478 66.667 0.00 0.00 41.69 4.73
3473 4142 2.827642 GTGGCTGGAGGCTGATGC 60.828 66.667 0.00 0.00 41.69 3.91
3474 4143 2.513204 CGTGGCTGGAGGCTGATG 60.513 66.667 0.00 0.00 41.69 3.07
3475 4144 4.479993 GCGTGGCTGGAGGCTGAT 62.480 66.667 0.00 0.00 41.69 2.90
3477 4146 3.774528 TAGCGTGGCTGGAGGCTG 61.775 66.667 0.00 0.00 40.10 4.85
3478 4147 3.775654 GTAGCGTGGCTGGAGGCT 61.776 66.667 0.00 0.00 40.10 4.58
3479 4148 2.804828 AAAGTAGCGTGGCTGGAGGC 62.805 60.000 0.00 0.00 40.10 4.70
3480 4149 0.321653 AAAAGTAGCGTGGCTGGAGG 60.322 55.000 0.00 0.00 40.10 4.30
3481 4150 1.523758 AAAAAGTAGCGTGGCTGGAG 58.476 50.000 0.00 0.00 40.10 3.86
3482 4151 3.717842 AAAAAGTAGCGTGGCTGGA 57.282 47.368 0.00 0.00 40.10 3.86
3512 4181 9.661954 TCTTAGAGGGATCACTCTTAATGTAAT 57.338 33.333 31.75 7.78 45.21 1.89
3513 4182 9.137459 CTCTTAGAGGGATCACTCTTAATGTAA 57.863 37.037 31.75 17.54 45.21 2.41
3514 4183 8.503573 TCTCTTAGAGGGATCACTCTTAATGTA 58.496 37.037 31.75 10.82 45.21 2.29
3515 4184 7.358263 TCTCTTAGAGGGATCACTCTTAATGT 58.642 38.462 31.75 10.04 45.21 2.71
3516 4185 7.831691 TCTCTTAGAGGGATCACTCTTAATG 57.168 40.000 31.75 18.96 45.21 1.90
3517 4186 9.445973 AATTCTCTTAGAGGGATCACTCTTAAT 57.554 33.333 31.75 18.99 45.21 1.40
3518 4187 8.846423 AATTCTCTTAGAGGGATCACTCTTAA 57.154 34.615 31.75 20.56 45.21 1.85
3519 4188 8.846423 AAATTCTCTTAGAGGGATCACTCTTA 57.154 34.615 31.75 22.05 45.21 2.10
3520 4189 7.147567 GGAAATTCTCTTAGAGGGATCACTCTT 60.148 40.741 31.75 16.15 45.21 2.85
3522 4191 6.326323 AGGAAATTCTCTTAGAGGGATCACTC 59.674 42.308 17.75 17.75 37.77 3.51
3523 4192 6.209026 AGGAAATTCTCTTAGAGGGATCACT 58.791 40.000 9.58 0.00 0.00 3.41
3524 4193 6.493189 AGGAAATTCTCTTAGAGGGATCAC 57.507 41.667 9.58 0.00 0.00 3.06
3525 4194 7.366226 AGTAGGAAATTCTCTTAGAGGGATCA 58.634 38.462 9.58 0.00 0.00 2.92
3526 4195 7.039293 GGAGTAGGAAATTCTCTTAGAGGGATC 60.039 44.444 9.58 3.54 0.00 3.36
3527 4196 6.785466 GGAGTAGGAAATTCTCTTAGAGGGAT 59.215 42.308 9.58 1.64 0.00 3.85
3528 4197 6.137559 GGAGTAGGAAATTCTCTTAGAGGGA 58.862 44.000 9.58 0.00 0.00 4.20
3529 4198 5.305902 GGGAGTAGGAAATTCTCTTAGAGGG 59.694 48.000 9.58 0.00 0.00 4.30
3530 4199 5.900123 TGGGAGTAGGAAATTCTCTTAGAGG 59.100 44.000 9.58 0.00 0.00 3.69
3531 4200 6.041523 CCTGGGAGTAGGAAATTCTCTTAGAG 59.958 46.154 2.23 2.23 40.42 2.43
3532 4201 5.900123 CCTGGGAGTAGGAAATTCTCTTAGA 59.100 44.000 0.00 0.00 40.42 2.10
3533 4202 5.071115 CCCTGGGAGTAGGAAATTCTCTTAG 59.929 48.000 7.01 0.00 40.42 2.18
3534 4203 4.969359 CCCTGGGAGTAGGAAATTCTCTTA 59.031 45.833 7.01 0.00 40.42 2.10
3535 4204 3.783082 CCCTGGGAGTAGGAAATTCTCTT 59.217 47.826 7.01 0.00 40.42 2.85
3536 4205 3.388913 CCCTGGGAGTAGGAAATTCTCT 58.611 50.000 7.01 0.00 40.42 3.10
3537 4206 2.158740 GCCCTGGGAGTAGGAAATTCTC 60.159 54.545 19.27 0.00 40.42 2.87
3538 4207 1.847088 GCCCTGGGAGTAGGAAATTCT 59.153 52.381 19.27 0.00 40.42 2.40
3539 4208 1.564348 TGCCCTGGGAGTAGGAAATTC 59.436 52.381 19.27 0.00 40.42 2.17
3540 4209 1.681229 TGCCCTGGGAGTAGGAAATT 58.319 50.000 19.27 0.00 40.42 1.82
3541 4210 1.285078 GTTGCCCTGGGAGTAGGAAAT 59.715 52.381 19.27 0.00 40.42 2.17
3542 4211 0.696501 GTTGCCCTGGGAGTAGGAAA 59.303 55.000 19.27 0.00 40.42 3.13
3543 4212 0.474854 TGTTGCCCTGGGAGTAGGAA 60.475 55.000 19.27 0.00 40.42 3.36
3544 4213 0.253160 ATGTTGCCCTGGGAGTAGGA 60.253 55.000 19.27 0.00 40.42 2.94
3545 4214 0.181350 GATGTTGCCCTGGGAGTAGG 59.819 60.000 19.27 0.00 37.59 3.18
3546 4215 1.139853 GAGATGTTGCCCTGGGAGTAG 59.860 57.143 19.27 0.00 0.00 2.57
3547 4216 1.204146 GAGATGTTGCCCTGGGAGTA 58.796 55.000 19.27 0.00 0.00 2.59
3548 4217 0.548682 AGAGATGTTGCCCTGGGAGT 60.549 55.000 19.27 0.00 0.00 3.85
3549 4218 0.107312 CAGAGATGTTGCCCTGGGAG 60.107 60.000 19.27 0.00 0.00 4.30
3550 4219 1.565390 CCAGAGATGTTGCCCTGGGA 61.565 60.000 19.27 0.00 41.76 4.37
3551 4220 1.077212 CCAGAGATGTTGCCCTGGG 60.077 63.158 8.86 8.86 41.76 4.45
3552 4221 4.651867 CCAGAGATGTTGCCCTGG 57.348 61.111 0.00 0.00 40.01 4.45
3553 4222 1.271543 TGAACCAGAGATGTTGCCCTG 60.272 52.381 0.00 0.00 0.00 4.45
3554 4223 1.004044 CTGAACCAGAGATGTTGCCCT 59.996 52.381 0.00 0.00 32.44 5.19
3555 4224 1.457346 CTGAACCAGAGATGTTGCCC 58.543 55.000 0.00 0.00 32.44 5.36
3556 4225 0.807496 GCTGAACCAGAGATGTTGCC 59.193 55.000 0.00 0.00 32.44 4.52
3557 4226 1.198637 GTGCTGAACCAGAGATGTTGC 59.801 52.381 0.00 0.00 32.44 4.17
3897 4566 1.607628 GGCAAGGATGATGCTGATCAC 59.392 52.381 0.00 0.00 41.52 3.06
3898 4567 1.213430 TGGCAAGGATGATGCTGATCA 59.787 47.619 0.00 0.00 42.92 2.92
3899 4568 1.977056 TGGCAAGGATGATGCTGATC 58.023 50.000 0.00 0.00 43.34 2.92
3900 4569 2.108425 AGATGGCAAGGATGATGCTGAT 59.892 45.455 0.00 0.00 43.34 2.90
3901 4570 1.493446 AGATGGCAAGGATGATGCTGA 59.507 47.619 0.00 0.00 43.34 4.26
3902 4571 1.982660 AGATGGCAAGGATGATGCTG 58.017 50.000 0.00 0.00 43.34 4.41
3903 4572 2.092049 TCAAGATGGCAAGGATGATGCT 60.092 45.455 0.00 0.00 43.34 3.79
3904 4573 2.304092 TCAAGATGGCAAGGATGATGC 58.696 47.619 0.00 0.00 43.08 3.91
3905 4574 5.289595 CAAATCAAGATGGCAAGGATGATG 58.710 41.667 8.53 2.75 0.00 3.07
3906 4575 4.202223 GCAAATCAAGATGGCAAGGATGAT 60.202 41.667 0.00 0.00 0.00 2.45
3907 4576 3.131577 GCAAATCAAGATGGCAAGGATGA 59.868 43.478 0.00 0.00 0.00 2.92
3908 4577 3.132289 AGCAAATCAAGATGGCAAGGATG 59.868 43.478 0.00 0.00 0.00 3.51
3909 4578 3.371965 AGCAAATCAAGATGGCAAGGAT 58.628 40.909 0.00 0.00 0.00 3.24
3910 4579 2.756760 GAGCAAATCAAGATGGCAAGGA 59.243 45.455 0.00 0.00 0.00 3.36
3911 4580 2.159142 GGAGCAAATCAAGATGGCAAGG 60.159 50.000 0.00 0.00 0.00 3.61
3912 4581 2.494471 TGGAGCAAATCAAGATGGCAAG 59.506 45.455 0.00 0.00 0.00 4.01
3913 4582 2.231964 GTGGAGCAAATCAAGATGGCAA 59.768 45.455 0.00 0.00 0.00 4.52
3914 4583 1.820519 GTGGAGCAAATCAAGATGGCA 59.179 47.619 0.00 0.00 0.00 4.92
3915 4584 1.820519 TGTGGAGCAAATCAAGATGGC 59.179 47.619 0.00 0.26 0.00 4.40
3916 4585 3.256383 TGTTGTGGAGCAAATCAAGATGG 59.744 43.478 0.00 0.00 39.03 3.51
3917 4586 4.508461 TGTTGTGGAGCAAATCAAGATG 57.492 40.909 0.00 0.00 39.03 2.90
3918 4587 4.768448 TGATGTTGTGGAGCAAATCAAGAT 59.232 37.500 0.00 0.00 39.03 2.40
3919 4588 4.022935 GTGATGTTGTGGAGCAAATCAAGA 60.023 41.667 0.00 0.00 39.03 3.02
3920 4589 4.022589 AGTGATGTTGTGGAGCAAATCAAG 60.023 41.667 0.00 0.00 39.03 3.02
3921 4590 3.890756 AGTGATGTTGTGGAGCAAATCAA 59.109 39.130 0.00 0.00 39.03 2.57
3922 4591 3.489355 AGTGATGTTGTGGAGCAAATCA 58.511 40.909 0.00 0.00 39.03 2.57
3923 4592 4.217118 AGAAGTGATGTTGTGGAGCAAATC 59.783 41.667 0.00 0.00 39.03 2.17
3924 4593 4.147321 AGAAGTGATGTTGTGGAGCAAAT 58.853 39.130 0.00 0.00 39.03 2.32
3925 4594 3.554934 AGAAGTGATGTTGTGGAGCAAA 58.445 40.909 0.00 0.00 39.03 3.68
3926 4595 3.141398 GAGAAGTGATGTTGTGGAGCAA 58.859 45.455 0.00 0.00 34.16 3.91
3927 4596 2.104622 TGAGAAGTGATGTTGTGGAGCA 59.895 45.455 0.00 0.00 0.00 4.26
3928 4597 2.771089 TGAGAAGTGATGTTGTGGAGC 58.229 47.619 0.00 0.00 0.00 4.70
3929 4598 4.829968 AGATGAGAAGTGATGTTGTGGAG 58.170 43.478 0.00 0.00 0.00 3.86
3930 4599 4.897509 AGATGAGAAGTGATGTTGTGGA 57.102 40.909 0.00 0.00 0.00 4.02
3931 4600 5.243981 AGAAGATGAGAAGTGATGTTGTGG 58.756 41.667 0.00 0.00 0.00 4.17
3932 4601 6.426025 TCAAGAAGATGAGAAGTGATGTTGTG 59.574 38.462 0.00 0.00 0.00 3.33
3933 4602 6.528321 TCAAGAAGATGAGAAGTGATGTTGT 58.472 36.000 0.00 0.00 0.00 3.32
3946 4615 0.107993 CCAGCCGCTCAAGAAGATGA 60.108 55.000 0.00 0.00 0.00 2.92
3947 4616 1.094073 CCCAGCCGCTCAAGAAGATG 61.094 60.000 0.00 0.00 0.00 2.90
3948 4617 1.222936 CCCAGCCGCTCAAGAAGAT 59.777 57.895 0.00 0.00 0.00 2.40
3949 4618 2.172483 GACCCAGCCGCTCAAGAAGA 62.172 60.000 0.00 0.00 0.00 2.87
3950 4619 1.743252 GACCCAGCCGCTCAAGAAG 60.743 63.158 0.00 0.00 0.00 2.85
3951 4620 2.347490 GACCCAGCCGCTCAAGAA 59.653 61.111 0.00 0.00 0.00 2.52
3952 4621 4.069232 CGACCCAGCCGCTCAAGA 62.069 66.667 0.00 0.00 0.00 3.02
3953 4622 4.069232 TCGACCCAGCCGCTCAAG 62.069 66.667 0.00 0.00 0.00 3.02
3954 4623 4.373116 GTCGACCCAGCCGCTCAA 62.373 66.667 3.51 0.00 0.00 3.02
3961 4630 4.803426 CTGGCTCGTCGACCCAGC 62.803 72.222 20.75 21.20 39.64 4.85
3962 4631 4.135153 CCTGGCTCGTCGACCCAG 62.135 72.222 24.15 24.15 44.49 4.45
3965 4634 4.148825 ATGCCTGGCTCGTCGACC 62.149 66.667 21.03 0.00 0.00 4.79
3966 4635 2.583593 GATGCCTGGCTCGTCGAC 60.584 66.667 21.03 5.18 0.00 4.20
3967 4636 2.755876 AGATGCCTGGCTCGTCGA 60.756 61.111 21.03 0.00 0.00 4.20
3968 4637 2.279120 GAGATGCCTGGCTCGTCG 60.279 66.667 21.03 0.00 0.00 5.12
3969 4638 2.279120 CGAGATGCCTGGCTCGTC 60.279 66.667 21.03 14.64 46.43 4.20
3972 4641 0.813210 CCTTTCGAGATGCCTGGCTC 60.813 60.000 21.03 14.30 0.00 4.70
3973 4642 1.222936 CCTTTCGAGATGCCTGGCT 59.777 57.895 21.03 5.22 0.00 4.75
3974 4643 0.813210 CTCCTTTCGAGATGCCTGGC 60.813 60.000 12.87 12.87 41.63 4.85
3975 4644 3.376218 CTCCTTTCGAGATGCCTGG 57.624 57.895 0.00 0.00 41.63 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.