Multiple sequence alignment - TraesCS7B01G268900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G268900 chr7B 100.000 4042 0 0 1 4042 492493073 492497114 0.000000e+00 7465.0
1 TraesCS7B01G268900 chr7D 96.385 3485 84 21 1 3471 468934498 468937954 0.000000e+00 5699.0
2 TraesCS7B01G268900 chr7D 93.478 184 11 1 3449 3632 468938470 468938652 5.150000e-69 272.0
3 TraesCS7B01G268900 chr7D 76.923 169 35 2 3774 3938 622606880 622607048 4.300000e-15 93.5
4 TraesCS7B01G268900 chr7A 93.715 2689 118 27 1042 3698 531732229 531729560 0.000000e+00 3982.0
5 TraesCS7B01G268900 chr7A 93.305 926 48 6 1 924 531733153 531732240 0.000000e+00 1354.0
6 TraesCS7B01G268900 chr7A 77.457 173 33 5 3774 3942 43250689 43250519 9.250000e-17 99.0
7 TraesCS7B01G268900 chr3D 83.178 214 34 2 2815 3027 62070205 62070417 1.150000e-45 195.0
8 TraesCS7B01G268900 chr3D 76.331 169 36 2 3774 3938 8676545 8676713 2.000000e-13 87.9
9 TraesCS7B01G268900 chr3D 87.500 64 6 2 3817 3879 495484019 495483957 5.600000e-09 73.1
10 TraesCS7B01G268900 chr3A 82.464 211 35 2 2815 3024 71148984 71149193 2.480000e-42 183.0
11 TraesCS7B01G268900 chr2A 83.740 123 10 6 3812 3927 717575871 717575752 1.540000e-19 108.0
12 TraesCS7B01G268900 chr6D 85.149 101 13 2 3774 3873 290322771 290322870 7.150000e-18 102.0
13 TraesCS7B01G268900 chr5D 76.608 171 34 4 3773 3938 562028466 562028635 5.560000e-14 89.8
14 TraesCS7B01G268900 chr5A 78.125 128 27 1 3812 3938 46284708 46284581 3.350000e-11 80.5
15 TraesCS7B01G268900 chr2B 76.562 128 25 3 3812 3936 614982470 614982595 9.380000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G268900 chr7B 492493073 492497114 4041 False 7465.0 7465 100.0000 1 4042 1 chr7B.!!$F1 4041
1 TraesCS7B01G268900 chr7D 468934498 468938652 4154 False 2985.5 5699 94.9315 1 3632 2 chr7D.!!$F2 3631
2 TraesCS7B01G268900 chr7A 531729560 531733153 3593 True 2668.0 3982 93.5100 1 3698 2 chr7A.!!$R2 3697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 647 2.238942 TGATTGCCTAGCGTATGGTG 57.761 50.000 0.0 0.0 0.0 4.17 F
1422 1432 2.224066 CCAAGGACTACTATTCTGCCCG 60.224 54.545 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 2186 2.423185 CTGCAACAAACAGTCCTTCACA 59.577 45.455 0.0 0.0 0.00 3.58 R
3339 3367 0.108138 AGCACCTAATCGGACAGCAC 60.108 55.000 0.0 0.0 36.31 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 5.658190 TGTCATAGTTCTGATGATCAGTGGA 59.342 40.000 20.82 7.01 44.58 4.02
128 129 2.498885 CTGATGATCAGTGGACAGTGGA 59.501 50.000 14.17 0.00 39.58 4.02
419 429 5.941647 TGTACTTGTAAGGCCAAAGGATTAC 59.058 40.000 5.01 4.30 31.46 1.89
421 431 6.382919 ACTTGTAAGGCCAAAGGATTACTA 57.617 37.500 5.01 0.00 31.83 1.82
488 498 4.760530 TGGTCTGGAAATTCAGATCGAT 57.239 40.909 0.00 0.00 45.31 3.59
500 510 2.743664 TCAGATCGATTGTGCAGGTTTG 59.256 45.455 0.00 0.00 0.00 2.93
512 522 2.626840 GCAGGTTTGCCTTGTCAAAAA 58.373 42.857 0.00 0.00 44.18 1.94
573 583 2.810852 CAAGCCTCCTTCTGACAAAGTC 59.189 50.000 0.00 0.00 0.00 3.01
606 616 6.596888 CACACATTCTTCCTGTGATAGAACAT 59.403 38.462 10.17 0.00 45.44 2.71
637 647 2.238942 TGATTGCCTAGCGTATGGTG 57.761 50.000 0.00 0.00 0.00 4.17
693 703 4.706962 GCCAAATGGTAGAGGAATCACTTT 59.293 41.667 0.71 0.00 37.57 2.66
789 799 3.367932 CACCACACATCGTCATGACTAAC 59.632 47.826 22.95 0.00 33.72 2.34
790 800 3.258372 ACCACACATCGTCATGACTAACT 59.742 43.478 22.95 2.71 33.72 2.24
858 868 7.680442 TTTAGTATAACATGCAGCAACAGAA 57.320 32.000 0.00 0.00 0.00 3.02
860 870 6.187125 AGTATAACATGCAGCAACAGAAAG 57.813 37.500 0.00 0.00 0.00 2.62
1274 1284 8.758829 ACTATTACAACTGAATGGATAGTGTCA 58.241 33.333 0.00 0.00 34.90 3.58
1373 1383 6.741992 TCACAATACAGAGGCTTATGTTTG 57.258 37.500 0.00 8.77 30.11 2.93
1422 1432 2.224066 CCAAGGACTACTATTCTGCCCG 60.224 54.545 0.00 0.00 0.00 6.13
2013 2028 7.308782 CTCATGGACTGAGTGGTTTTATAAC 57.691 40.000 0.00 0.00 45.42 1.89
2169 2186 2.754946 ATTACGGGATGTGTGACGTT 57.245 45.000 0.00 0.00 40.38 3.99
2224 2241 9.969001 TTGGCAAGGTAATAAGTTAAGATTAGT 57.031 29.630 0.00 0.00 0.00 2.24
2324 2341 2.043953 TGCGAGGAGGCTCTGCTA 60.044 61.111 15.23 5.04 30.82 3.49
2429 2447 8.256611 TGTCTCTGTAATTTTATCTTGCTGAC 57.743 34.615 0.00 0.00 0.00 3.51
2520 2538 7.415541 CCAAACAATCAATCAGTATGTACCCTG 60.416 40.741 0.00 0.00 37.40 4.45
2551 2569 7.517417 CGTTCAATTCCTGTATGATCAACTAGC 60.517 40.741 0.00 0.00 0.00 3.42
2626 2644 2.574006 TGACAGAAAGCCTGAAGCAT 57.426 45.000 0.00 0.00 45.78 3.79
2701 2719 2.689471 AGCTGTTCACATGACTGCAAAA 59.311 40.909 14.49 0.00 0.00 2.44
2904 2922 1.051812 CTTCCTCATGGGATACGGCT 58.948 55.000 0.00 0.00 44.66 5.52
3062 3086 9.915629 GTGTAGGTACATATATGGAAGAAGAAG 57.084 37.037 16.96 0.00 38.63 2.85
3063 3087 9.877222 TGTAGGTACATATATGGAAGAAGAAGA 57.123 33.333 16.96 0.00 0.00 2.87
3066 3090 9.661954 AGGTACATATATGGAAGAAGAAGAAGA 57.338 33.333 16.96 0.00 0.00 2.87
3080 3104 6.544197 AGAAGAAGAAGAAGAAAAGGTTGGAC 59.456 38.462 0.00 0.00 0.00 4.02
3126 3150 0.792640 CGATCGGCAATACTGATGGC 59.207 55.000 7.38 0.00 44.82 4.40
3162 3186 0.111446 TGGCGTTGAAATGGGGAGAA 59.889 50.000 0.00 0.00 0.00 2.87
3231 3255 0.252284 TTGGTTGGTTGGTTGGTGGT 60.252 50.000 0.00 0.00 0.00 4.16
3232 3256 0.972983 TGGTTGGTTGGTTGGTGGTG 60.973 55.000 0.00 0.00 0.00 4.17
3339 3367 1.216990 ATAAAGGGAGGCTGGTGAGG 58.783 55.000 0.00 0.00 0.00 3.86
3367 3413 1.291132 GATTAGGTGCTCCACTTCGC 58.709 55.000 7.70 0.00 34.40 4.70
3512 4096 1.656652 CGATCCGAATTCTTGTGGCT 58.343 50.000 3.52 0.00 0.00 4.75
3518 4102 2.354704 CCGAATTCTTGTGGCTAGGACA 60.355 50.000 3.52 0.00 0.00 4.02
3519 4103 3.334691 CGAATTCTTGTGGCTAGGACAA 58.665 45.455 3.52 0.00 0.00 3.18
3547 4131 2.622064 AGTTGTGGACTGTCAAGACC 57.378 50.000 10.38 0.00 37.17 3.85
3603 4187 9.685828 ATTTTCATCCAGAAATTTGCAAATTTG 57.314 25.926 40.58 30.89 45.70 2.32
3657 4241 7.848223 ATGTTCGACATAATGAAGATGTTGA 57.152 32.000 2.26 2.26 43.12 3.18
3660 4250 6.647212 TCGACATAATGAAGATGTTGACAC 57.353 37.500 2.26 0.00 41.00 3.67
3665 4255 6.204688 ACATAATGAAGATGTTGACACGTGTT 59.795 34.615 24.26 6.01 33.70 3.32
3666 4256 3.942539 TGAAGATGTTGACACGTGTTG 57.057 42.857 24.26 0.00 0.00 3.33
3667 4257 2.031560 TGAAGATGTTGACACGTGTTGC 59.968 45.455 24.26 15.74 0.00 4.17
3678 4268 2.561366 CGTGTTGCGTTTGTCAACC 58.439 52.632 3.79 0.00 42.17 3.77
3698 4288 2.242196 CCTGTGGTTGGATGGTTAGGAT 59.758 50.000 0.00 0.00 0.00 3.24
3699 4289 3.545703 CTGTGGTTGGATGGTTAGGATC 58.454 50.000 0.00 0.00 0.00 3.36
3700 4290 3.189606 TGTGGTTGGATGGTTAGGATCT 58.810 45.455 0.00 0.00 0.00 2.75
3701 4291 4.367166 TGTGGTTGGATGGTTAGGATCTA 58.633 43.478 0.00 0.00 0.00 1.98
3702 4292 4.408921 TGTGGTTGGATGGTTAGGATCTAG 59.591 45.833 0.00 0.00 0.00 2.43
3703 4293 3.973973 TGGTTGGATGGTTAGGATCTAGG 59.026 47.826 0.00 0.00 0.00 3.02
3704 4294 4.232091 GGTTGGATGGTTAGGATCTAGGA 58.768 47.826 0.00 0.00 0.00 2.94
3705 4295 4.284746 GGTTGGATGGTTAGGATCTAGGAG 59.715 50.000 0.00 0.00 0.00 3.69
3706 4296 4.834406 TGGATGGTTAGGATCTAGGAGT 57.166 45.455 0.00 0.00 0.00 3.85
3707 4297 5.942977 TGGATGGTTAGGATCTAGGAGTA 57.057 43.478 0.00 0.00 0.00 2.59
3708 4298 6.485388 TGGATGGTTAGGATCTAGGAGTAT 57.515 41.667 0.00 0.00 0.00 2.12
3709 4299 7.599353 TGGATGGTTAGGATCTAGGAGTATA 57.401 40.000 0.00 0.00 0.00 1.47
3710 4300 7.644062 TGGATGGTTAGGATCTAGGAGTATAG 58.356 42.308 0.00 0.00 0.00 1.31
3711 4301 7.242101 TGGATGGTTAGGATCTAGGAGTATAGT 59.758 40.741 0.00 0.00 0.00 2.12
3712 4302 7.558444 GGATGGTTAGGATCTAGGAGTATAGTG 59.442 44.444 0.00 0.00 0.00 2.74
3713 4303 6.791371 TGGTTAGGATCTAGGAGTATAGTGG 58.209 44.000 0.00 0.00 0.00 4.00
3714 4304 6.334774 TGGTTAGGATCTAGGAGTATAGTGGT 59.665 42.308 0.00 0.00 0.00 4.16
3715 4305 7.518653 TGGTTAGGATCTAGGAGTATAGTGGTA 59.481 40.741 0.00 0.00 0.00 3.25
3716 4306 8.559175 GGTTAGGATCTAGGAGTATAGTGGTAT 58.441 40.741 0.00 0.00 0.00 2.73
3717 4307 9.978336 GTTAGGATCTAGGAGTATAGTGGTATT 57.022 37.037 0.00 0.00 0.00 1.89
3719 4309 7.645002 AGGATCTAGGAGTATAGTGGTATTCC 58.355 42.308 0.00 0.00 32.31 3.01
3720 4310 6.834969 GGATCTAGGAGTATAGTGGTATTCCC 59.165 46.154 0.00 0.00 32.49 3.97
3721 4311 6.791847 TCTAGGAGTATAGTGGTATTCCCA 57.208 41.667 0.00 0.00 42.51 4.37
3722 4312 6.791371 TCTAGGAGTATAGTGGTATTCCCAG 58.209 44.000 0.00 0.00 46.45 4.45
3723 4313 4.161102 AGGAGTATAGTGGTATTCCCAGC 58.839 47.826 0.00 0.00 46.45 4.85
3724 4314 3.056749 GGAGTATAGTGGTATTCCCAGCG 60.057 52.174 0.00 0.00 46.45 5.18
3725 4315 2.299297 AGTATAGTGGTATTCCCAGCGC 59.701 50.000 0.00 0.00 46.45 5.92
3726 4316 0.033504 ATAGTGGTATTCCCAGCGCG 59.966 55.000 0.00 0.00 46.45 6.86
3727 4317 2.023414 TAGTGGTATTCCCAGCGCGG 62.023 60.000 8.83 6.52 46.45 6.46
3728 4318 4.849310 TGGTATTCCCAGCGCGGC 62.849 66.667 8.83 0.00 38.72 6.53
3729 4319 4.849310 GGTATTCCCAGCGCGGCA 62.849 66.667 8.83 0.00 0.00 5.69
3730 4320 3.272334 GTATTCCCAGCGCGGCAG 61.272 66.667 8.83 1.41 0.00 4.85
3743 4333 4.363034 GGCAGCGCCCTATACTTC 57.637 61.111 2.29 0.00 44.06 3.01
3744 4334 1.445942 GGCAGCGCCCTATACTTCA 59.554 57.895 2.29 0.00 44.06 3.02
3745 4335 0.880718 GGCAGCGCCCTATACTTCAC 60.881 60.000 2.29 0.00 44.06 3.18
3746 4336 0.179084 GCAGCGCCCTATACTTCACA 60.179 55.000 2.29 0.00 0.00 3.58
3747 4337 1.571919 CAGCGCCCTATACTTCACAC 58.428 55.000 2.29 0.00 0.00 3.82
3748 4338 0.464452 AGCGCCCTATACTTCACACC 59.536 55.000 2.29 0.00 0.00 4.16
3749 4339 0.874607 GCGCCCTATACTTCACACCG 60.875 60.000 0.00 0.00 0.00 4.94
3750 4340 0.249322 CGCCCTATACTTCACACCGG 60.249 60.000 0.00 0.00 0.00 5.28
3751 4341 0.828677 GCCCTATACTTCACACCGGT 59.171 55.000 0.00 0.00 0.00 5.28
3752 4342 1.472728 GCCCTATACTTCACACCGGTG 60.473 57.143 32.83 32.83 46.66 4.94
3753 4343 1.472728 CCCTATACTTCACACCGGTGC 60.473 57.143 34.26 0.00 44.87 5.01
3754 4344 1.480954 CCTATACTTCACACCGGTGCT 59.519 52.381 34.26 18.48 44.87 4.40
3755 4345 2.093658 CCTATACTTCACACCGGTGCTT 60.094 50.000 34.26 13.77 44.87 3.91
3756 4346 1.808411 ATACTTCACACCGGTGCTTG 58.192 50.000 34.26 24.95 44.87 4.01
3757 4347 0.882927 TACTTCACACCGGTGCTTGC 60.883 55.000 34.26 0.00 44.87 4.01
3758 4348 1.893808 CTTCACACCGGTGCTTGCT 60.894 57.895 34.26 12.07 44.87 3.91
3759 4349 1.447317 CTTCACACCGGTGCTTGCTT 61.447 55.000 34.26 11.24 44.87 3.91
3760 4350 1.034838 TTCACACCGGTGCTTGCTTT 61.035 50.000 34.26 10.41 44.87 3.51
3761 4351 1.034838 TCACACCGGTGCTTGCTTTT 61.035 50.000 34.26 9.57 44.87 2.27
3762 4352 0.179113 CACACCGGTGCTTGCTTTTT 60.179 50.000 34.26 8.75 38.37 1.94
3763 4353 1.066303 CACACCGGTGCTTGCTTTTTA 59.934 47.619 34.26 0.00 38.37 1.52
3764 4354 1.336755 ACACCGGTGCTTGCTTTTTAG 59.663 47.619 34.26 6.32 0.00 1.85
3765 4355 0.313987 ACCGGTGCTTGCTTTTTAGC 59.686 50.000 6.12 0.00 37.89 3.09
3766 4356 0.313672 CCGGTGCTTGCTTTTTAGCA 59.686 50.000 0.00 0.00 44.58 3.49
3776 4366 3.715495 TGCTTTTTAGCAATGTGTGTGG 58.285 40.909 0.00 0.00 42.40 4.17
3777 4367 3.059166 GCTTTTTAGCAATGTGTGTGGG 58.941 45.455 0.00 0.00 34.41 4.61
3778 4368 3.243704 GCTTTTTAGCAATGTGTGTGGGA 60.244 43.478 0.00 0.00 34.41 4.37
3779 4369 4.549458 CTTTTTAGCAATGTGTGTGGGAG 58.451 43.478 0.00 0.00 0.00 4.30
3780 4370 2.198827 TTAGCAATGTGTGTGGGAGG 57.801 50.000 0.00 0.00 0.00 4.30
3781 4371 1.357137 TAGCAATGTGTGTGGGAGGA 58.643 50.000 0.00 0.00 0.00 3.71
3782 4372 0.037303 AGCAATGTGTGTGGGAGGAG 59.963 55.000 0.00 0.00 0.00 3.69
3783 4373 0.036732 GCAATGTGTGTGGGAGGAGA 59.963 55.000 0.00 0.00 0.00 3.71
3784 4374 1.813513 CAATGTGTGTGGGAGGAGAC 58.186 55.000 0.00 0.00 0.00 3.36
3785 4375 0.321671 AATGTGTGTGGGAGGAGACG 59.678 55.000 0.00 0.00 0.00 4.18
3786 4376 0.832135 ATGTGTGTGGGAGGAGACGT 60.832 55.000 0.00 0.00 0.00 4.34
3787 4377 1.046472 TGTGTGTGGGAGGAGACGTT 61.046 55.000 0.00 0.00 0.00 3.99
3788 4378 0.319641 GTGTGTGGGAGGAGACGTTC 60.320 60.000 0.00 0.00 0.00 3.95
3796 4386 4.863984 GGAGACGTTCCTGTCGAC 57.136 61.111 9.11 9.11 43.70 4.20
3797 4387 2.255430 GGAGACGTTCCTGTCGACT 58.745 57.895 17.92 0.00 43.70 4.18
3798 4388 1.446907 GGAGACGTTCCTGTCGACTA 58.553 55.000 17.92 2.26 43.70 2.59
3799 4389 1.808945 GGAGACGTTCCTGTCGACTAA 59.191 52.381 17.92 5.82 43.70 2.24
3800 4390 2.159544 GGAGACGTTCCTGTCGACTAAG 60.160 54.545 17.92 6.52 43.70 2.18
3801 4391 1.811359 AGACGTTCCTGTCGACTAAGG 59.189 52.381 17.92 15.94 43.70 2.69
3802 4392 1.538950 GACGTTCCTGTCGACTAAGGT 59.461 52.381 17.92 17.78 34.94 3.50
3803 4393 1.268899 ACGTTCCTGTCGACTAAGGTG 59.731 52.381 17.92 12.14 34.94 4.00
3804 4394 1.268899 CGTTCCTGTCGACTAAGGTGT 59.731 52.381 17.92 0.00 34.94 4.16
3805 4395 2.288030 CGTTCCTGTCGACTAAGGTGTT 60.288 50.000 17.92 0.00 34.94 3.32
3806 4396 3.725490 GTTCCTGTCGACTAAGGTGTTT 58.275 45.455 17.92 0.00 34.94 2.83
3807 4397 4.124970 GTTCCTGTCGACTAAGGTGTTTT 58.875 43.478 17.92 0.00 34.94 2.43
3808 4398 4.411256 TCCTGTCGACTAAGGTGTTTTT 57.589 40.909 17.92 0.00 34.94 1.94
3809 4399 4.374399 TCCTGTCGACTAAGGTGTTTTTC 58.626 43.478 17.92 0.00 34.94 2.29
3810 4400 4.124238 CCTGTCGACTAAGGTGTTTTTCA 58.876 43.478 17.92 0.00 0.00 2.69
3811 4401 4.755123 CCTGTCGACTAAGGTGTTTTTCAT 59.245 41.667 17.92 0.00 0.00 2.57
3812 4402 5.334105 CCTGTCGACTAAGGTGTTTTTCATG 60.334 44.000 17.92 0.00 0.00 3.07
3813 4403 5.361427 TGTCGACTAAGGTGTTTTTCATGA 58.639 37.500 17.92 0.00 0.00 3.07
3814 4404 5.235616 TGTCGACTAAGGTGTTTTTCATGAC 59.764 40.000 17.92 0.00 0.00 3.06
3815 4405 5.465724 GTCGACTAAGGTGTTTTTCATGACT 59.534 40.000 8.70 0.00 0.00 3.41
3816 4406 6.018180 GTCGACTAAGGTGTTTTTCATGACTT 60.018 38.462 8.70 0.00 0.00 3.01
3817 4407 6.540914 TCGACTAAGGTGTTTTTCATGACTTT 59.459 34.615 0.00 0.00 0.00 2.66
3818 4408 7.711772 TCGACTAAGGTGTTTTTCATGACTTTA 59.288 33.333 0.00 0.00 0.00 1.85
3819 4409 8.504005 CGACTAAGGTGTTTTTCATGACTTTAT 58.496 33.333 0.00 0.00 0.00 1.40
3820 4410 9.827411 GACTAAGGTGTTTTTCATGACTTTATC 57.173 33.333 0.00 0.00 0.00 1.75
3821 4411 9.349713 ACTAAGGTGTTTTTCATGACTTTATCA 57.650 29.630 0.00 0.00 43.13 2.15
3824 4414 9.696917 AAGGTGTTTTTCATGACTTTATCAATC 57.303 29.630 0.00 0.00 41.93 2.67
3825 4415 9.082313 AGGTGTTTTTCATGACTTTATCAATCT 57.918 29.630 0.00 0.00 41.93 2.40
3826 4416 9.346725 GGTGTTTTTCATGACTTTATCAATCTC 57.653 33.333 0.00 0.00 41.93 2.75
3827 4417 9.897744 GTGTTTTTCATGACTTTATCAATCTCA 57.102 29.630 0.00 0.00 41.93 3.27
3833 4423 9.895138 TTCATGACTTTATCAATCTCAAGATGA 57.105 29.630 0.00 0.00 41.93 2.92
3836 4426 9.848710 ATGACTTTATCAATCTCAAGATGATGT 57.151 29.630 11.77 0.00 41.93 3.06
3837 4427 9.106070 TGACTTTATCAATCTCAAGATGATGTG 57.894 33.333 11.77 1.23 33.02 3.21
3838 4428 7.928103 ACTTTATCAATCTCAAGATGATGTGC 58.072 34.615 11.77 0.00 34.49 4.57
3839 4429 6.872628 TTATCAATCTCAAGATGATGTGCC 57.127 37.500 11.77 0.00 34.49 5.01
3840 4430 3.200483 TCAATCTCAAGATGATGTGCCG 58.800 45.455 0.00 0.00 34.49 5.69
3841 4431 2.251409 ATCTCAAGATGATGTGCCGG 57.749 50.000 0.00 0.00 32.68 6.13
3842 4432 0.462581 TCTCAAGATGATGTGCCGGC 60.463 55.000 22.73 22.73 0.00 6.13
3843 4433 0.463295 CTCAAGATGATGTGCCGGCT 60.463 55.000 29.70 7.33 0.00 5.52
3844 4434 0.035152 TCAAGATGATGTGCCGGCTT 60.035 50.000 29.70 12.77 0.00 4.35
3845 4435 1.209261 TCAAGATGATGTGCCGGCTTA 59.791 47.619 29.70 17.09 0.00 3.09
3846 4436 1.600957 CAAGATGATGTGCCGGCTTAG 59.399 52.381 29.70 2.27 0.00 2.18
3847 4437 0.833287 AGATGATGTGCCGGCTTAGT 59.167 50.000 29.70 11.11 0.00 2.24
3848 4438 1.202580 AGATGATGTGCCGGCTTAGTC 60.203 52.381 29.70 19.55 0.00 2.59
3849 4439 0.833287 ATGATGTGCCGGCTTAGTCT 59.167 50.000 29.70 6.09 0.00 3.24
3850 4440 0.108186 TGATGTGCCGGCTTAGTCTG 60.108 55.000 29.70 0.00 0.00 3.51
3851 4441 0.108138 GATGTGCCGGCTTAGTCTGT 60.108 55.000 29.70 4.64 0.00 3.41
3852 4442 0.108138 ATGTGCCGGCTTAGTCTGTC 60.108 55.000 29.70 7.05 0.00 3.51
3853 4443 1.805945 GTGCCGGCTTAGTCTGTCG 60.806 63.158 29.70 0.00 0.00 4.35
3857 4447 2.478989 CGGCTTAGTCTGTCGGAGA 58.521 57.895 0.00 0.00 0.00 3.71
3858 4448 1.025812 CGGCTTAGTCTGTCGGAGAT 58.974 55.000 0.00 0.00 40.67 2.75
3859 4449 1.268794 CGGCTTAGTCTGTCGGAGATG 60.269 57.143 0.00 0.00 40.67 2.90
3860 4450 1.751924 GGCTTAGTCTGTCGGAGATGT 59.248 52.381 0.00 0.00 40.67 3.06
3861 4451 2.166664 GGCTTAGTCTGTCGGAGATGTT 59.833 50.000 0.00 0.00 40.67 2.71
3862 4452 3.440228 GCTTAGTCTGTCGGAGATGTTC 58.560 50.000 0.00 0.00 40.67 3.18
3863 4453 3.119459 GCTTAGTCTGTCGGAGATGTTCA 60.119 47.826 0.00 0.00 40.67 3.18
3864 4454 4.440802 GCTTAGTCTGTCGGAGATGTTCAT 60.441 45.833 0.00 0.00 40.67 2.57
3865 4455 5.221067 GCTTAGTCTGTCGGAGATGTTCATA 60.221 44.000 0.00 0.00 40.67 2.15
3866 4456 6.515862 GCTTAGTCTGTCGGAGATGTTCATAT 60.516 42.308 0.00 0.00 40.67 1.78
3867 4457 5.193663 AGTCTGTCGGAGATGTTCATATG 57.806 43.478 0.00 0.00 40.67 1.78
3868 4458 4.889995 AGTCTGTCGGAGATGTTCATATGA 59.110 41.667 0.00 0.00 40.67 2.15
3869 4459 5.009510 AGTCTGTCGGAGATGTTCATATGAG 59.990 44.000 5.39 0.00 40.67 2.90
3870 4460 4.889995 TCTGTCGGAGATGTTCATATGAGT 59.110 41.667 5.39 0.00 40.67 3.41
3871 4461 6.017026 GTCTGTCGGAGATGTTCATATGAGTA 60.017 42.308 5.39 0.00 40.67 2.59
3872 4462 6.205658 TCTGTCGGAGATGTTCATATGAGTAG 59.794 42.308 5.39 0.00 40.67 2.57
3873 4463 5.241728 TGTCGGAGATGTTCATATGAGTAGG 59.758 44.000 5.39 0.00 40.67 3.18
3874 4464 5.241949 GTCGGAGATGTTCATATGAGTAGGT 59.758 44.000 5.39 0.00 40.67 3.08
3875 4465 5.241728 TCGGAGATGTTCATATGAGTAGGTG 59.758 44.000 5.39 0.00 0.00 4.00
3876 4466 5.010112 CGGAGATGTTCATATGAGTAGGTGT 59.990 44.000 5.39 0.00 0.00 4.16
3877 4467 6.219473 GGAGATGTTCATATGAGTAGGTGTG 58.781 44.000 5.39 0.00 0.00 3.82
3878 4468 5.605534 AGATGTTCATATGAGTAGGTGTGC 58.394 41.667 5.39 0.00 0.00 4.57
3879 4469 4.817318 TGTTCATATGAGTAGGTGTGCA 57.183 40.909 5.39 0.00 0.00 4.57
3880 4470 5.357742 TGTTCATATGAGTAGGTGTGCAT 57.642 39.130 5.39 0.00 0.00 3.96
3881 4471 6.478512 TGTTCATATGAGTAGGTGTGCATA 57.521 37.500 5.39 0.00 0.00 3.14
3882 4472 6.883744 TGTTCATATGAGTAGGTGTGCATAA 58.116 36.000 5.39 0.00 0.00 1.90
3883 4473 6.986231 TGTTCATATGAGTAGGTGTGCATAAG 59.014 38.462 5.39 0.00 0.00 1.73
3884 4474 6.731292 TCATATGAGTAGGTGTGCATAAGT 57.269 37.500 0.00 0.00 0.00 2.24
3885 4475 6.515832 TCATATGAGTAGGTGTGCATAAGTG 58.484 40.000 0.00 0.00 0.00 3.16
3886 4476 4.826274 ATGAGTAGGTGTGCATAAGTGT 57.174 40.909 0.00 0.00 0.00 3.55
3887 4477 3.925379 TGAGTAGGTGTGCATAAGTGTG 58.075 45.455 0.00 0.00 0.00 3.82
3888 4478 3.323691 TGAGTAGGTGTGCATAAGTGTGT 59.676 43.478 0.00 0.00 0.00 3.72
3889 4479 4.202315 TGAGTAGGTGTGCATAAGTGTGTT 60.202 41.667 0.00 0.00 0.00 3.32
3890 4480 4.315803 AGTAGGTGTGCATAAGTGTGTTC 58.684 43.478 0.00 0.00 0.00 3.18
3891 4481 2.143122 AGGTGTGCATAAGTGTGTTCG 58.857 47.619 0.00 0.00 0.00 3.95
3892 4482 1.871039 GGTGTGCATAAGTGTGTTCGT 59.129 47.619 0.00 0.00 0.00 3.85
3893 4483 3.061322 GGTGTGCATAAGTGTGTTCGTA 58.939 45.455 0.00 0.00 0.00 3.43
3894 4484 3.122948 GGTGTGCATAAGTGTGTTCGTAG 59.877 47.826 0.00 0.00 0.00 3.51
3895 4485 3.985279 GTGTGCATAAGTGTGTTCGTAGA 59.015 43.478 0.00 0.00 0.00 2.59
3896 4486 4.090066 GTGTGCATAAGTGTGTTCGTAGAG 59.910 45.833 0.00 0.00 38.43 2.43
3897 4487 4.022676 TGTGCATAAGTGTGTTCGTAGAGA 60.023 41.667 0.00 0.00 38.43 3.10
3898 4488 4.323868 GTGCATAAGTGTGTTCGTAGAGAC 59.676 45.833 0.00 0.00 38.43 3.36
3899 4489 4.022676 TGCATAAGTGTGTTCGTAGAGACA 60.023 41.667 0.00 0.00 38.43 3.41
3900 4490 4.921515 GCATAAGTGTGTTCGTAGAGACAA 59.078 41.667 0.00 0.00 38.43 3.18
3901 4491 5.404366 GCATAAGTGTGTTCGTAGAGACAAA 59.596 40.000 0.00 0.00 38.43 2.83
3902 4492 6.090898 GCATAAGTGTGTTCGTAGAGACAAAT 59.909 38.462 0.00 0.00 38.43 2.32
3903 4493 5.907197 AAGTGTGTTCGTAGAGACAAATG 57.093 39.130 0.00 0.00 38.43 2.32
3904 4494 4.945246 AGTGTGTTCGTAGAGACAAATGT 58.055 39.130 0.00 0.00 38.43 2.71
3905 4495 6.080648 AGTGTGTTCGTAGAGACAAATGTA 57.919 37.500 0.00 0.00 38.43 2.29
3906 4496 6.688578 AGTGTGTTCGTAGAGACAAATGTAT 58.311 36.000 0.00 0.00 38.43 2.29
3907 4497 7.823665 AGTGTGTTCGTAGAGACAAATGTATA 58.176 34.615 0.00 0.00 38.43 1.47
3908 4498 8.467598 AGTGTGTTCGTAGAGACAAATGTATAT 58.532 33.333 0.00 0.00 38.43 0.86
3909 4499 9.726232 GTGTGTTCGTAGAGACAAATGTATATA 57.274 33.333 0.00 0.00 38.43 0.86
3928 4518 9.174166 TGTATATATGTATGTATGAGCGTCTGT 57.826 33.333 0.00 0.00 0.00 3.41
3929 4519 9.439537 GTATATATGTATGTATGAGCGTCTGTG 57.560 37.037 0.00 0.00 0.00 3.66
3930 4520 4.655762 ATGTATGTATGAGCGTCTGTGT 57.344 40.909 0.00 0.00 0.00 3.72
3931 4521 4.028852 TGTATGTATGAGCGTCTGTGTC 57.971 45.455 0.00 0.00 0.00 3.67
3932 4522 3.694566 TGTATGTATGAGCGTCTGTGTCT 59.305 43.478 0.00 0.00 0.00 3.41
3933 4523 4.879545 TGTATGTATGAGCGTCTGTGTCTA 59.120 41.667 0.00 0.00 0.00 2.59
3934 4524 5.531287 TGTATGTATGAGCGTCTGTGTCTAT 59.469 40.000 0.00 0.00 0.00 1.98
3935 4525 6.708949 TGTATGTATGAGCGTCTGTGTCTATA 59.291 38.462 0.00 0.00 0.00 1.31
3936 4526 5.419760 TGTATGAGCGTCTGTGTCTATAC 57.580 43.478 0.00 0.00 0.00 1.47
3937 4527 5.123936 TGTATGAGCGTCTGTGTCTATACT 58.876 41.667 0.00 0.00 0.00 2.12
3938 4528 4.822036 ATGAGCGTCTGTGTCTATACTC 57.178 45.455 0.00 0.00 0.00 2.59
3939 4529 3.875125 TGAGCGTCTGTGTCTATACTCT 58.125 45.455 0.00 0.00 0.00 3.24
3940 4530 5.019785 TGAGCGTCTGTGTCTATACTCTA 57.980 43.478 0.00 0.00 0.00 2.43
3941 4531 5.612351 TGAGCGTCTGTGTCTATACTCTAT 58.388 41.667 0.00 0.00 0.00 1.98
3942 4532 6.756221 TGAGCGTCTGTGTCTATACTCTATA 58.244 40.000 0.00 0.00 0.00 1.31
3943 4533 6.645827 TGAGCGTCTGTGTCTATACTCTATAC 59.354 42.308 0.00 0.00 0.00 1.47
3944 4534 6.761312 AGCGTCTGTGTCTATACTCTATACT 58.239 40.000 0.00 0.00 0.00 2.12
3945 4535 7.894708 AGCGTCTGTGTCTATACTCTATACTA 58.105 38.462 0.00 0.00 0.00 1.82
3946 4536 8.533657 AGCGTCTGTGTCTATACTCTATACTAT 58.466 37.037 0.00 0.00 0.00 2.12
3947 4537 8.597227 GCGTCTGTGTCTATACTCTATACTATG 58.403 40.741 0.00 0.00 0.00 2.23
3948 4538 9.642327 CGTCTGTGTCTATACTCTATACTATGT 57.358 37.037 0.00 0.00 0.00 2.29
3990 4580 8.688747 AGAGAGAAGAAATTTCAAGATGTTGT 57.311 30.769 19.99 3.24 34.98 3.32
3991 4581 8.566260 AGAGAGAAGAAATTTCAAGATGTTGTG 58.434 33.333 19.99 0.00 34.98 3.33
3992 4582 8.230472 AGAGAAGAAATTTCAAGATGTTGTGT 57.770 30.769 19.99 0.00 34.98 3.72
3993 4583 8.689972 AGAGAAGAAATTTCAAGATGTTGTGTT 58.310 29.630 19.99 1.16 34.98 3.32
3994 4584 8.638685 AGAAGAAATTTCAAGATGTTGTGTTG 57.361 30.769 19.99 0.00 34.98 3.33
3995 4585 7.707893 AGAAGAAATTTCAAGATGTTGTGTTGG 59.292 33.333 19.99 0.00 34.98 3.77
3996 4586 5.754890 AGAAATTTCAAGATGTTGTGTTGGC 59.245 36.000 19.99 0.00 34.98 4.52
3997 4587 4.942761 ATTTCAAGATGTTGTGTTGGCT 57.057 36.364 2.11 0.00 34.98 4.75
3998 4588 3.988379 TTCAAGATGTTGTGTTGGCTC 57.012 42.857 2.11 0.00 34.98 4.70
3999 4589 2.929641 TCAAGATGTTGTGTTGGCTCA 58.070 42.857 2.11 0.00 34.98 4.26
4000 4590 3.286353 TCAAGATGTTGTGTTGGCTCAA 58.714 40.909 2.11 0.00 34.98 3.02
4001 4591 3.890756 TCAAGATGTTGTGTTGGCTCAAT 59.109 39.130 2.11 0.00 34.98 2.57
4002 4592 4.022935 TCAAGATGTTGTGTTGGCTCAATC 60.023 41.667 2.11 0.00 34.98 2.67
4003 4593 3.759581 AGATGTTGTGTTGGCTCAATCT 58.240 40.909 0.00 0.00 31.87 2.40
4004 4594 3.755378 AGATGTTGTGTTGGCTCAATCTC 59.245 43.478 0.00 0.00 31.87 2.75
4005 4595 3.213206 TGTTGTGTTGGCTCAATCTCT 57.787 42.857 0.00 0.00 31.87 3.10
4006 4596 3.554934 TGTTGTGTTGGCTCAATCTCTT 58.445 40.909 0.00 0.00 31.87 2.85
4007 4597 3.316029 TGTTGTGTTGGCTCAATCTCTTG 59.684 43.478 0.00 0.00 31.87 3.02
4008 4598 2.507484 TGTGTTGGCTCAATCTCTTGG 58.493 47.619 0.00 0.00 32.95 3.61
4009 4599 2.106338 TGTGTTGGCTCAATCTCTTGGA 59.894 45.455 0.00 0.00 32.95 3.53
4010 4600 2.746362 GTGTTGGCTCAATCTCTTGGAG 59.254 50.000 0.00 0.00 32.95 3.86
4011 4601 2.639347 TGTTGGCTCAATCTCTTGGAGA 59.361 45.455 0.00 0.00 43.20 3.71
4020 4610 3.823281 ATCTCTTGGAGATGCTCACAG 57.177 47.619 8.96 0.00 46.21 3.66
4021 4611 1.829849 TCTCTTGGAGATGCTCACAGG 59.170 52.381 0.00 0.00 33.35 4.00
4022 4612 0.907486 TCTTGGAGATGCTCACAGGG 59.093 55.000 0.00 0.00 31.08 4.45
4023 4613 0.907486 CTTGGAGATGCTCACAGGGA 59.093 55.000 0.00 0.00 31.08 4.20
4024 4614 1.489649 CTTGGAGATGCTCACAGGGAT 59.510 52.381 0.00 0.00 31.08 3.85
4025 4615 2.477104 TGGAGATGCTCACAGGGATA 57.523 50.000 0.00 0.00 31.08 2.59
4026 4616 2.323599 TGGAGATGCTCACAGGGATAG 58.676 52.381 0.00 0.00 31.08 2.08
4027 4617 2.324541 GGAGATGCTCACAGGGATAGT 58.675 52.381 0.00 0.00 31.08 2.12
4028 4618 2.036992 GGAGATGCTCACAGGGATAGTG 59.963 54.545 0.00 0.00 38.32 2.74
4029 4619 2.697751 GAGATGCTCACAGGGATAGTGT 59.302 50.000 0.00 0.00 38.16 3.55
4030 4620 2.433604 AGATGCTCACAGGGATAGTGTG 59.566 50.000 0.00 0.00 45.65 3.82
4031 4621 1.644509 TGCTCACAGGGATAGTGTGT 58.355 50.000 3.33 0.00 44.75 3.72
4032 4622 1.276138 TGCTCACAGGGATAGTGTGTG 59.724 52.381 3.33 2.55 44.75 3.82
4033 4623 1.276421 GCTCACAGGGATAGTGTGTGT 59.724 52.381 3.33 0.00 44.75 3.72
4034 4624 2.932622 GCTCACAGGGATAGTGTGTGTG 60.933 54.545 3.33 0.00 44.75 3.82
4035 4625 2.300152 CTCACAGGGATAGTGTGTGTGT 59.700 50.000 3.33 0.00 44.75 3.72
4036 4626 3.502356 TCACAGGGATAGTGTGTGTGTA 58.498 45.455 3.33 0.00 44.75 2.90
4037 4627 3.898741 TCACAGGGATAGTGTGTGTGTAA 59.101 43.478 3.33 0.00 44.75 2.41
4038 4628 4.530553 TCACAGGGATAGTGTGTGTGTAAT 59.469 41.667 3.33 0.00 44.75 1.89
4039 4629 5.012664 TCACAGGGATAGTGTGTGTGTAATT 59.987 40.000 3.33 0.00 44.75 1.40
4040 4630 5.122239 CACAGGGATAGTGTGTGTGTAATTG 59.878 44.000 0.00 0.00 40.44 2.32
4041 4631 4.094887 CAGGGATAGTGTGTGTGTAATTGC 59.905 45.833 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
419 429 7.033791 TGCAACGAGTTTAGGAATTAGTCTAG 58.966 38.462 0.00 0.00 0.00 2.43
421 431 5.790593 TGCAACGAGTTTAGGAATTAGTCT 58.209 37.500 0.00 0.00 0.00 3.24
438 448 5.051774 CCTTTTCTTGTTGTACAATGCAACG 60.052 40.000 12.26 6.77 46.48 4.10
513 523 9.671279 CCAAATTTTAATAAGGAAGCCAGAATT 57.329 29.630 0.00 0.00 0.00 2.17
514 524 8.825774 ACCAAATTTTAATAAGGAAGCCAGAAT 58.174 29.630 0.00 0.00 0.00 2.40
524 534 8.947055 AGCTGCATTACCAAATTTTAATAAGG 57.053 30.769 1.02 0.00 0.00 2.69
573 583 1.195448 GGAAGAATGTGTGTGACAGCG 59.805 52.381 0.00 0.00 38.23 5.18
606 616 4.336433 GCTAGGCAATCAAATGAGCTGTTA 59.664 41.667 0.00 0.00 0.00 2.41
637 647 6.903419 AGCTTAAAGCATAGTTGTCAGAAAC 58.097 36.000 0.00 0.00 45.56 2.78
693 703 2.930950 CAGAGGACAAGAACCAACCAA 58.069 47.619 0.00 0.00 0.00 3.67
858 868 6.757897 TTATGAAATCACGATTGGAAGCTT 57.242 33.333 0.00 0.00 0.00 3.74
860 870 6.963796 AGATTATGAAATCACGATTGGAAGC 58.036 36.000 0.00 0.00 43.44 3.86
897 907 3.993920 GCTTGAAGCAAGAAATTTCCCA 58.006 40.909 13.09 1.55 43.42 4.37
926 936 7.505585 TCTTTATTGTGACTGAAAATCCAACCT 59.494 33.333 0.00 0.00 0.00 3.50
931 941 9.358872 GGATTTCTTTATTGTGACTGAAAATCC 57.641 33.333 7.14 7.14 0.00 3.01
1079 1089 6.071784 TGGATCAAGATGACAAGAACATTTGG 60.072 38.462 0.00 0.00 32.32 3.28
1274 1284 6.096282 ACAGGTGCACATTTAAAACAGTTACT 59.904 34.615 20.43 0.00 0.00 2.24
1373 1383 8.834465 AGCAAGACATATCTGATCAACAATAAC 58.166 33.333 0.00 0.00 34.48 1.89
1755 1770 7.067496 AGTCATTAGTTCAAAGAAGGTGAGA 57.933 36.000 0.00 0.00 0.00 3.27
1799 1814 5.221641 TGACACCTAAGCACATAACAGAACT 60.222 40.000 0.00 0.00 0.00 3.01
2013 2028 9.553064 GAGGATATATATTGAATGGCTACCTTG 57.447 37.037 0.00 0.00 0.00 3.61
2169 2186 2.423185 CTGCAACAAACAGTCCTTCACA 59.577 45.455 0.00 0.00 0.00 3.58
2223 2240 9.748708 ATAAAATAAATGACATGCCATACACAC 57.251 29.630 0.00 0.00 0.00 3.82
2324 2341 7.052873 GCCTGCATAATATCAGATTCTGGTAT 58.947 38.462 12.76 12.76 39.20 2.73
2429 2447 7.798596 ACTTCATGAATTAAGACAGGCTATG 57.201 36.000 8.96 0.00 0.00 2.23
2520 2538 6.535150 TGATCATACAGGAATTGAACGAGAAC 59.465 38.462 0.00 0.00 0.00 3.01
2551 2569 2.704464 TGATTCCATCAGCTCAGGTG 57.296 50.000 0.00 0.00 33.59 4.00
2701 2719 6.238621 CGAGAGCACTGTATCTCTTATCAAGT 60.239 42.308 15.90 0.00 39.57 3.16
2785 2803 3.439129 CCAGAAATCGGTACTTTCAACCC 59.561 47.826 8.33 0.00 35.51 4.11
2786 2804 4.070009 ACCAGAAATCGGTACTTTCAACC 58.930 43.478 8.33 0.00 35.51 3.77
2787 2805 4.514066 ACACCAGAAATCGGTACTTTCAAC 59.486 41.667 8.33 0.00 35.51 3.18
2831 2849 3.411418 CTCCGTCACGATGGACCCG 62.411 68.421 0.00 0.00 41.36 5.28
2838 2856 3.069980 GCTGCTCCTCCGTCACGAT 62.070 63.158 0.00 0.00 0.00 3.73
2924 2942 2.727544 CTGCGAGGGCTAGAGCTC 59.272 66.667 5.27 5.27 43.28 4.09
2930 2948 3.009115 AAAGGGCTGCGAGGGCTA 61.009 61.111 0.00 0.00 40.82 3.93
2996 3014 0.737367 TGATCGGCTTCAGCTTCACG 60.737 55.000 0.00 0.00 41.70 4.35
3062 3086 3.626217 ACACGTCCAACCTTTTCTTCTTC 59.374 43.478 0.00 0.00 0.00 2.87
3063 3087 3.377172 CACACGTCCAACCTTTTCTTCTT 59.623 43.478 0.00 0.00 0.00 2.52
3064 3088 2.943033 CACACGTCCAACCTTTTCTTCT 59.057 45.455 0.00 0.00 0.00 2.85
3065 3089 2.940410 TCACACGTCCAACCTTTTCTTC 59.060 45.455 0.00 0.00 0.00 2.87
3066 3090 2.943033 CTCACACGTCCAACCTTTTCTT 59.057 45.455 0.00 0.00 0.00 2.52
3067 3091 2.561569 CTCACACGTCCAACCTTTTCT 58.438 47.619 0.00 0.00 0.00 2.52
3068 3092 1.602377 CCTCACACGTCCAACCTTTTC 59.398 52.381 0.00 0.00 0.00 2.29
3069 3093 1.675552 CCTCACACGTCCAACCTTTT 58.324 50.000 0.00 0.00 0.00 2.27
3070 3094 0.179029 CCCTCACACGTCCAACCTTT 60.179 55.000 0.00 0.00 0.00 3.11
3080 3104 1.745489 GCCTAAAGCCCCTCACACG 60.745 63.158 0.00 0.00 34.35 4.49
3126 3150 2.953466 CCAAAATCAGGGCAGACATG 57.047 50.000 0.00 0.00 0.00 3.21
3136 3160 2.995258 CCCATTTCAACGCCAAAATCAG 59.005 45.455 0.00 0.00 0.00 2.90
3231 3255 4.080015 ACGAATCAATGGAATAGAACCCCA 60.080 41.667 0.00 0.00 0.00 4.96
3232 3256 4.275936 CACGAATCAATGGAATAGAACCCC 59.724 45.833 0.00 0.00 0.00 4.95
3339 3367 0.108138 AGCACCTAATCGGACAGCAC 60.108 55.000 0.00 0.00 36.31 4.40
3367 3413 2.971901 AAGGAAACCAAGGGTACAGG 57.028 50.000 0.00 0.00 33.12 4.00
3496 4080 2.093658 GTCCTAGCCACAAGAATTCGGA 60.094 50.000 0.00 0.00 0.00 4.55
3512 4096 6.708949 GTCCACAACTGATAACTTTTGTCCTA 59.291 38.462 0.00 0.00 29.65 2.94
3547 4131 2.435586 CAGTCGAGCTTGGGGCAG 60.436 66.667 0.00 0.00 44.79 4.85
3638 4222 5.062183 ACGTGTCAACATCTTCATTATGTCG 59.938 40.000 0.00 0.00 36.56 4.35
3643 4227 5.559991 GCAACACGTGTCAACATCTTCATTA 60.560 40.000 23.61 0.00 0.00 1.90
3660 4250 0.098025 AGGTTGACAAACGCAACACG 59.902 50.000 0.00 0.00 45.58 4.49
3665 4255 0.678366 ACCACAGGTTGACAAACGCA 60.678 50.000 0.00 0.00 37.15 5.24
3666 4256 0.454196 AACCACAGGTTGACAAACGC 59.546 50.000 0.00 0.00 45.07 4.84
3678 4268 3.200825 AGATCCTAACCATCCAACCACAG 59.799 47.826 0.00 0.00 0.00 3.66
3691 4281 9.978336 AATACCACTATACTCCTAGATCCTAAC 57.022 37.037 0.00 0.00 0.00 2.34
3698 4288 6.750351 GCTGGGAATACCACTATACTCCTAGA 60.750 46.154 3.73 0.00 46.80 2.43
3699 4289 5.419471 GCTGGGAATACCACTATACTCCTAG 59.581 48.000 0.00 0.00 46.80 3.02
3700 4290 5.331069 GCTGGGAATACCACTATACTCCTA 58.669 45.833 0.00 0.00 46.80 2.94
3701 4291 4.161102 GCTGGGAATACCACTATACTCCT 58.839 47.826 0.00 0.00 46.80 3.69
3702 4292 3.056749 CGCTGGGAATACCACTATACTCC 60.057 52.174 0.00 0.00 46.80 3.85
3703 4293 3.614390 GCGCTGGGAATACCACTATACTC 60.614 52.174 0.00 0.00 46.80 2.59
3704 4294 2.299297 GCGCTGGGAATACCACTATACT 59.701 50.000 0.00 0.00 46.80 2.12
3705 4295 2.685100 GCGCTGGGAATACCACTATAC 58.315 52.381 0.00 0.00 46.80 1.47
3706 4296 1.271379 CGCGCTGGGAATACCACTATA 59.729 52.381 5.56 0.00 46.80 1.31
3707 4297 0.033504 CGCGCTGGGAATACCACTAT 59.966 55.000 5.56 0.00 46.80 2.12
3708 4298 1.440060 CGCGCTGGGAATACCACTA 59.560 57.895 5.56 0.00 46.80 2.74
3709 4299 2.186903 CGCGCTGGGAATACCACT 59.813 61.111 5.56 0.00 46.80 4.00
3710 4300 2.895372 CCGCGCTGGGAATACCAC 60.895 66.667 5.56 0.00 46.80 4.16
3712 4302 4.849310 TGCCGCGCTGGGAATACC 62.849 66.667 17.73 3.22 38.63 2.73
3713 4303 3.272334 CTGCCGCGCTGGGAATAC 61.272 66.667 17.73 3.82 37.78 1.89
3727 4317 0.179084 TGTGAAGTATAGGGCGCTGC 60.179 55.000 14.51 3.69 0.00 5.25
3728 4318 1.571919 GTGTGAAGTATAGGGCGCTG 58.428 55.000 14.51 0.00 0.00 5.18
3729 4319 0.464452 GGTGTGAAGTATAGGGCGCT 59.536 55.000 7.64 8.86 0.00 5.92
3730 4320 0.874607 CGGTGTGAAGTATAGGGCGC 60.875 60.000 0.00 0.00 0.00 6.53
3731 4321 0.249322 CCGGTGTGAAGTATAGGGCG 60.249 60.000 0.00 0.00 0.00 6.13
3732 4322 0.828677 ACCGGTGTGAAGTATAGGGC 59.171 55.000 6.12 0.00 0.00 5.19
3733 4323 1.472728 GCACCGGTGTGAAGTATAGGG 60.473 57.143 33.92 5.88 45.76 3.53
3734 4324 1.480954 AGCACCGGTGTGAAGTATAGG 59.519 52.381 33.92 6.10 45.76 2.57
3735 4325 2.930040 CAAGCACCGGTGTGAAGTATAG 59.070 50.000 33.92 6.66 45.76 1.31
3736 4326 2.933492 GCAAGCACCGGTGTGAAGTATA 60.933 50.000 33.92 0.00 45.76 1.47
3737 4327 1.808411 CAAGCACCGGTGTGAAGTAT 58.192 50.000 33.92 11.12 45.76 2.12
3738 4328 0.882927 GCAAGCACCGGTGTGAAGTA 60.883 55.000 33.92 0.00 45.76 2.24
3739 4329 2.186826 GCAAGCACCGGTGTGAAGT 61.187 57.895 33.92 13.36 45.76 3.01
3740 4330 1.447317 AAGCAAGCACCGGTGTGAAG 61.447 55.000 33.92 21.90 45.76 3.02
3741 4331 1.034838 AAAGCAAGCACCGGTGTGAA 61.035 50.000 33.92 0.00 45.76 3.18
3742 4332 1.034838 AAAAGCAAGCACCGGTGTGA 61.035 50.000 33.92 0.00 45.76 3.58
3743 4333 0.179113 AAAAAGCAAGCACCGGTGTG 60.179 50.000 33.92 25.78 45.65 3.82
3744 4334 1.336755 CTAAAAAGCAAGCACCGGTGT 59.663 47.619 33.92 18.91 0.00 4.16
3745 4335 1.930371 GCTAAAAAGCAAGCACCGGTG 60.930 52.381 30.66 30.66 38.63 4.94
3746 4336 0.313987 GCTAAAAAGCAAGCACCGGT 59.686 50.000 0.00 0.00 38.63 5.28
3747 4337 0.313672 TGCTAAAAAGCAAGCACCGG 59.686 50.000 0.00 0.00 43.56 5.28
3748 4338 3.863681 TGCTAAAAAGCAAGCACCG 57.136 47.368 0.00 0.00 43.56 4.94
3755 4345 3.492309 CCCACACACATTGCTAAAAAGCA 60.492 43.478 0.00 0.00 43.81 3.91
3756 4346 3.059166 CCCACACACATTGCTAAAAAGC 58.941 45.455 0.00 0.00 0.00 3.51
3757 4347 4.549458 CTCCCACACACATTGCTAAAAAG 58.451 43.478 0.00 0.00 0.00 2.27
3758 4348 3.320541 CCTCCCACACACATTGCTAAAAA 59.679 43.478 0.00 0.00 0.00 1.94
3759 4349 2.890311 CCTCCCACACACATTGCTAAAA 59.110 45.455 0.00 0.00 0.00 1.52
3760 4350 2.107378 TCCTCCCACACACATTGCTAAA 59.893 45.455 0.00 0.00 0.00 1.85
3761 4351 1.702401 TCCTCCCACACACATTGCTAA 59.298 47.619 0.00 0.00 0.00 3.09
3762 4352 1.278985 CTCCTCCCACACACATTGCTA 59.721 52.381 0.00 0.00 0.00 3.49
3763 4353 0.037303 CTCCTCCCACACACATTGCT 59.963 55.000 0.00 0.00 0.00 3.91
3764 4354 0.036732 TCTCCTCCCACACACATTGC 59.963 55.000 0.00 0.00 0.00 3.56
3765 4355 1.813513 GTCTCCTCCCACACACATTG 58.186 55.000 0.00 0.00 0.00 2.82
3766 4356 0.321671 CGTCTCCTCCCACACACATT 59.678 55.000 0.00 0.00 0.00 2.71
3767 4357 0.832135 ACGTCTCCTCCCACACACAT 60.832 55.000 0.00 0.00 0.00 3.21
3768 4358 1.046472 AACGTCTCCTCCCACACACA 61.046 55.000 0.00 0.00 0.00 3.72
3769 4359 0.319641 GAACGTCTCCTCCCACACAC 60.320 60.000 0.00 0.00 0.00 3.82
3770 4360 1.469335 GGAACGTCTCCTCCCACACA 61.469 60.000 8.87 0.00 41.61 3.72
3771 4361 1.292541 GGAACGTCTCCTCCCACAC 59.707 63.158 8.87 0.00 41.61 3.82
3772 4362 3.787394 GGAACGTCTCCTCCCACA 58.213 61.111 8.87 0.00 41.61 4.17
3779 4369 1.446907 TAGTCGACAGGAACGTCTCC 58.553 55.000 19.50 8.26 45.81 3.71
3780 4370 2.159544 CCTTAGTCGACAGGAACGTCTC 60.160 54.545 19.50 0.00 33.54 3.36
3781 4371 1.811359 CCTTAGTCGACAGGAACGTCT 59.189 52.381 19.50 0.00 33.54 4.18
3782 4372 1.538950 ACCTTAGTCGACAGGAACGTC 59.461 52.381 24.52 0.00 33.90 4.34
3783 4373 1.268899 CACCTTAGTCGACAGGAACGT 59.731 52.381 24.52 10.21 33.90 3.99
3784 4374 1.268899 ACACCTTAGTCGACAGGAACG 59.731 52.381 24.52 15.45 33.90 3.95
3785 4375 3.382048 AACACCTTAGTCGACAGGAAC 57.618 47.619 24.52 0.00 33.90 3.62
3786 4376 4.411256 AAAACACCTTAGTCGACAGGAA 57.589 40.909 24.52 12.01 33.90 3.36
3787 4377 4.141892 TGAAAAACACCTTAGTCGACAGGA 60.142 41.667 24.52 4.94 33.90 3.86
3788 4378 4.124238 TGAAAAACACCTTAGTCGACAGG 58.876 43.478 19.50 18.62 36.10 4.00
3789 4379 5.465390 TCATGAAAAACACCTTAGTCGACAG 59.535 40.000 19.50 7.15 0.00 3.51
3790 4380 5.235616 GTCATGAAAAACACCTTAGTCGACA 59.764 40.000 19.50 0.48 0.00 4.35
3791 4381 5.465724 AGTCATGAAAAACACCTTAGTCGAC 59.534 40.000 7.70 7.70 0.00 4.20
3792 4382 5.607477 AGTCATGAAAAACACCTTAGTCGA 58.393 37.500 0.00 0.00 0.00 4.20
3793 4383 5.924475 AGTCATGAAAAACACCTTAGTCG 57.076 39.130 0.00 0.00 0.00 4.18
3794 4384 9.827411 GATAAAGTCATGAAAAACACCTTAGTC 57.173 33.333 0.00 0.00 0.00 2.59
3795 4385 9.349713 TGATAAAGTCATGAAAAACACCTTAGT 57.650 29.630 0.00 0.00 0.00 2.24
3798 4388 9.696917 GATTGATAAAGTCATGAAAAACACCTT 57.303 29.630 0.00 0.00 36.54 3.50
3799 4389 9.082313 AGATTGATAAAGTCATGAAAAACACCT 57.918 29.630 0.00 0.00 36.54 4.00
3800 4390 9.346725 GAGATTGATAAAGTCATGAAAAACACC 57.653 33.333 0.00 0.00 36.54 4.16
3801 4391 9.897744 TGAGATTGATAAAGTCATGAAAAACAC 57.102 29.630 0.00 0.00 36.54 3.32
3807 4397 9.895138 TCATCTTGAGATTGATAAAGTCATGAA 57.105 29.630 0.00 0.00 36.54 2.57
3810 4400 9.848710 ACATCATCTTGAGATTGATAAAGTCAT 57.151 29.630 0.90 0.00 36.54 3.06
3811 4401 9.106070 CACATCATCTTGAGATTGATAAAGTCA 57.894 33.333 0.90 0.00 31.21 3.41
3812 4402 8.068977 GCACATCATCTTGAGATTGATAAAGTC 58.931 37.037 0.90 0.00 31.21 3.01
3813 4403 7.013083 GGCACATCATCTTGAGATTGATAAAGT 59.987 37.037 0.90 0.00 31.21 2.66
3814 4404 7.361127 GGCACATCATCTTGAGATTGATAAAG 58.639 38.462 0.90 0.00 31.21 1.85
3815 4405 6.017687 CGGCACATCATCTTGAGATTGATAAA 60.018 38.462 0.90 0.00 31.21 1.40
3816 4406 5.467735 CGGCACATCATCTTGAGATTGATAA 59.532 40.000 0.90 0.00 31.21 1.75
3817 4407 4.992951 CGGCACATCATCTTGAGATTGATA 59.007 41.667 0.90 0.00 31.21 2.15
3818 4408 3.813724 CGGCACATCATCTTGAGATTGAT 59.186 43.478 0.90 1.64 31.21 2.57
3819 4409 3.200483 CGGCACATCATCTTGAGATTGA 58.800 45.455 0.90 0.00 31.21 2.57
3820 4410 2.289820 CCGGCACATCATCTTGAGATTG 59.710 50.000 0.00 0.00 31.21 2.67
3821 4411 2.569059 CCGGCACATCATCTTGAGATT 58.431 47.619 0.00 0.00 31.21 2.40
3822 4412 1.813092 GCCGGCACATCATCTTGAGAT 60.813 52.381 24.80 0.00 34.56 2.75
3823 4413 0.462581 GCCGGCACATCATCTTGAGA 60.463 55.000 24.80 0.00 0.00 3.27
3824 4414 0.463295 AGCCGGCACATCATCTTGAG 60.463 55.000 31.54 0.00 0.00 3.02
3825 4415 0.035152 AAGCCGGCACATCATCTTGA 60.035 50.000 31.54 0.00 0.00 3.02
3826 4416 1.600957 CTAAGCCGGCACATCATCTTG 59.399 52.381 31.54 2.80 0.00 3.02
3827 4417 1.210478 ACTAAGCCGGCACATCATCTT 59.790 47.619 31.54 14.07 0.00 2.40
3828 4418 0.833287 ACTAAGCCGGCACATCATCT 59.167 50.000 31.54 0.76 0.00 2.90
3829 4419 1.202580 AGACTAAGCCGGCACATCATC 60.203 52.381 31.54 17.48 0.00 2.92
3830 4420 0.833287 AGACTAAGCCGGCACATCAT 59.167 50.000 31.54 8.60 0.00 2.45
3831 4421 0.108186 CAGACTAAGCCGGCACATCA 60.108 55.000 31.54 7.27 0.00 3.07
3832 4422 0.108138 ACAGACTAAGCCGGCACATC 60.108 55.000 31.54 19.70 0.00 3.06
3833 4423 0.108138 GACAGACTAAGCCGGCACAT 60.108 55.000 31.54 17.05 0.00 3.21
3834 4424 1.292223 GACAGACTAAGCCGGCACA 59.708 57.895 31.54 15.00 0.00 4.57
3835 4425 1.805945 CGACAGACTAAGCCGGCAC 60.806 63.158 31.54 13.93 0.00 5.01
3836 4426 2.571757 CGACAGACTAAGCCGGCA 59.428 61.111 31.54 7.98 0.00 5.69
3837 4427 2.202756 CCGACAGACTAAGCCGGC 60.203 66.667 21.89 21.89 33.47 6.13
3838 4428 1.030488 TCTCCGACAGACTAAGCCGG 61.030 60.000 0.00 0.00 41.36 6.13
3839 4429 1.025812 ATCTCCGACAGACTAAGCCG 58.974 55.000 0.00 0.00 32.26 5.52
3840 4430 1.751924 ACATCTCCGACAGACTAAGCC 59.248 52.381 0.00 0.00 32.26 4.35
3841 4431 3.119459 TGAACATCTCCGACAGACTAAGC 60.119 47.826 0.00 0.00 32.26 3.09
3842 4432 4.703645 TGAACATCTCCGACAGACTAAG 57.296 45.455 0.00 0.00 32.26 2.18
3843 4433 6.546034 TCATATGAACATCTCCGACAGACTAA 59.454 38.462 1.98 0.00 32.26 2.24
3844 4434 6.062095 TCATATGAACATCTCCGACAGACTA 58.938 40.000 1.98 0.00 32.26 2.59
3845 4435 4.889995 TCATATGAACATCTCCGACAGACT 59.110 41.667 1.98 0.00 32.26 3.24
3846 4436 5.188327 TCATATGAACATCTCCGACAGAC 57.812 43.478 1.98 0.00 32.26 3.51
3847 4437 4.889995 ACTCATATGAACATCTCCGACAGA 59.110 41.667 6.90 0.00 34.78 3.41
3848 4438 5.193663 ACTCATATGAACATCTCCGACAG 57.806 43.478 6.90 0.00 0.00 3.51
3849 4439 5.241728 CCTACTCATATGAACATCTCCGACA 59.758 44.000 6.90 0.00 0.00 4.35
3850 4440 5.241949 ACCTACTCATATGAACATCTCCGAC 59.758 44.000 6.90 0.00 0.00 4.79
3851 4441 5.241728 CACCTACTCATATGAACATCTCCGA 59.758 44.000 6.90 0.00 0.00 4.55
3852 4442 5.010112 ACACCTACTCATATGAACATCTCCG 59.990 44.000 6.90 0.00 0.00 4.63
3853 4443 6.219473 CACACCTACTCATATGAACATCTCC 58.781 44.000 6.90 0.00 0.00 3.71
3854 4444 5.694006 GCACACCTACTCATATGAACATCTC 59.306 44.000 6.90 0.00 0.00 2.75
3855 4445 5.129320 TGCACACCTACTCATATGAACATCT 59.871 40.000 6.90 0.00 0.00 2.90
3856 4446 5.359756 TGCACACCTACTCATATGAACATC 58.640 41.667 6.90 0.00 0.00 3.06
3857 4447 5.357742 TGCACACCTACTCATATGAACAT 57.642 39.130 6.90 0.00 0.00 2.71
3858 4448 4.817318 TGCACACCTACTCATATGAACA 57.183 40.909 6.90 0.00 0.00 3.18
3859 4449 6.986817 ACTTATGCACACCTACTCATATGAAC 59.013 38.462 6.90 0.00 0.00 3.18
3860 4450 6.986231 CACTTATGCACACCTACTCATATGAA 59.014 38.462 6.90 0.00 0.00 2.57
3861 4451 6.098266 ACACTTATGCACACCTACTCATATGA 59.902 38.462 5.07 5.07 0.00 2.15
3862 4452 6.201615 CACACTTATGCACACCTACTCATATG 59.798 42.308 0.00 0.00 0.00 1.78
3863 4453 6.127054 ACACACTTATGCACACCTACTCATAT 60.127 38.462 0.00 0.00 0.00 1.78
3864 4454 5.186992 ACACACTTATGCACACCTACTCATA 59.813 40.000 0.00 0.00 0.00 2.15
3865 4455 4.020218 ACACACTTATGCACACCTACTCAT 60.020 41.667 0.00 0.00 0.00 2.90
3866 4456 3.323691 ACACACTTATGCACACCTACTCA 59.676 43.478 0.00 0.00 0.00 3.41
3867 4457 3.926616 ACACACTTATGCACACCTACTC 58.073 45.455 0.00 0.00 0.00 2.59
3868 4458 4.315803 GAACACACTTATGCACACCTACT 58.684 43.478 0.00 0.00 0.00 2.57
3869 4459 3.122948 CGAACACACTTATGCACACCTAC 59.877 47.826 0.00 0.00 0.00 3.18
3870 4460 3.243941 ACGAACACACTTATGCACACCTA 60.244 43.478 0.00 0.00 0.00 3.08
3871 4461 2.143122 CGAACACACTTATGCACACCT 58.857 47.619 0.00 0.00 0.00 4.00
3872 4462 1.871039 ACGAACACACTTATGCACACC 59.129 47.619 0.00 0.00 0.00 4.16
3873 4463 3.985279 TCTACGAACACACTTATGCACAC 59.015 43.478 0.00 0.00 0.00 3.82
3874 4464 4.022676 TCTCTACGAACACACTTATGCACA 60.023 41.667 0.00 0.00 0.00 4.57
3875 4465 4.323868 GTCTCTACGAACACACTTATGCAC 59.676 45.833 0.00 0.00 0.00 4.57
3876 4466 4.022676 TGTCTCTACGAACACACTTATGCA 60.023 41.667 0.00 0.00 0.00 3.96
3877 4467 4.482386 TGTCTCTACGAACACACTTATGC 58.518 43.478 0.00 0.00 0.00 3.14
3878 4468 7.116376 ACATTTGTCTCTACGAACACACTTATG 59.884 37.037 0.00 0.00 31.68 1.90
3879 4469 7.152645 ACATTTGTCTCTACGAACACACTTAT 58.847 34.615 0.00 0.00 31.68 1.73
3880 4470 6.509656 ACATTTGTCTCTACGAACACACTTA 58.490 36.000 0.00 0.00 31.68 2.24
3881 4471 5.357257 ACATTTGTCTCTACGAACACACTT 58.643 37.500 0.00 0.00 31.68 3.16
3882 4472 4.945246 ACATTTGTCTCTACGAACACACT 58.055 39.130 0.00 0.00 31.68 3.55
3883 4473 6.946229 ATACATTTGTCTCTACGAACACAC 57.054 37.500 0.00 0.00 31.68 3.82
3902 4492 9.174166 ACAGACGCTCATACATACATATATACA 57.826 33.333 0.00 0.00 0.00 2.29
3903 4493 9.439537 CACAGACGCTCATACATACATATATAC 57.560 37.037 0.00 0.00 0.00 1.47
3904 4494 9.174166 ACACAGACGCTCATACATACATATATA 57.826 33.333 0.00 0.00 0.00 0.86
3905 4495 8.056407 ACACAGACGCTCATACATACATATAT 57.944 34.615 0.00 0.00 0.00 0.86
3906 4496 7.390718 AGACACAGACGCTCATACATACATATA 59.609 37.037 0.00 0.00 0.00 0.86
3907 4497 6.207614 AGACACAGACGCTCATACATACATAT 59.792 38.462 0.00 0.00 0.00 1.78
3908 4498 5.531287 AGACACAGACGCTCATACATACATA 59.469 40.000 0.00 0.00 0.00 2.29
3909 4499 4.339530 AGACACAGACGCTCATACATACAT 59.660 41.667 0.00 0.00 0.00 2.29
3910 4500 3.694566 AGACACAGACGCTCATACATACA 59.305 43.478 0.00 0.00 0.00 2.29
3911 4501 4.294416 AGACACAGACGCTCATACATAC 57.706 45.455 0.00 0.00 0.00 2.39
3912 4502 6.935208 AGTATAGACACAGACGCTCATACATA 59.065 38.462 0.00 0.00 0.00 2.29
3913 4503 5.765677 AGTATAGACACAGACGCTCATACAT 59.234 40.000 0.00 0.00 0.00 2.29
3914 4504 5.123936 AGTATAGACACAGACGCTCATACA 58.876 41.667 0.00 0.00 0.00 2.29
3915 4505 5.467399 AGAGTATAGACACAGACGCTCATAC 59.533 44.000 0.00 0.00 0.00 2.39
3916 4506 5.612351 AGAGTATAGACACAGACGCTCATA 58.388 41.667 0.00 0.00 0.00 2.15
3917 4507 4.456535 AGAGTATAGACACAGACGCTCAT 58.543 43.478 0.00 0.00 0.00 2.90
3918 4508 3.875125 AGAGTATAGACACAGACGCTCA 58.125 45.455 0.00 0.00 0.00 4.26
3919 4509 6.869913 AGTATAGAGTATAGACACAGACGCTC 59.130 42.308 0.00 0.00 0.00 5.03
3920 4510 6.761312 AGTATAGAGTATAGACACAGACGCT 58.239 40.000 0.00 0.00 0.00 5.07
3921 4511 8.597227 CATAGTATAGAGTATAGACACAGACGC 58.403 40.741 0.00 0.00 0.00 5.19
3922 4512 9.642327 ACATAGTATAGAGTATAGACACAGACG 57.358 37.037 0.00 0.00 0.00 4.18
3964 4554 9.784531 ACAACATCTTGAAATTTCTTCTCTCTA 57.215 29.630 18.64 0.00 0.00 2.43
3965 4555 8.566260 CACAACATCTTGAAATTTCTTCTCTCT 58.434 33.333 18.64 0.00 0.00 3.10
3966 4556 8.348507 ACACAACATCTTGAAATTTCTTCTCTC 58.651 33.333 18.64 0.00 0.00 3.20
3967 4557 8.230472 ACACAACATCTTGAAATTTCTTCTCT 57.770 30.769 18.64 0.00 0.00 3.10
3968 4558 8.749499 CAACACAACATCTTGAAATTTCTTCTC 58.251 33.333 18.64 0.00 0.00 2.87
3969 4559 7.707893 CCAACACAACATCTTGAAATTTCTTCT 59.292 33.333 18.64 0.00 0.00 2.85
3970 4560 7.517259 GCCAACACAACATCTTGAAATTTCTTC 60.517 37.037 18.64 0.00 0.00 2.87
3971 4561 6.258507 GCCAACACAACATCTTGAAATTTCTT 59.741 34.615 18.64 1.32 0.00 2.52
3972 4562 5.754890 GCCAACACAACATCTTGAAATTTCT 59.245 36.000 18.64 0.00 0.00 2.52
3973 4563 5.754890 AGCCAACACAACATCTTGAAATTTC 59.245 36.000 11.41 11.41 0.00 2.17
3974 4564 5.673514 AGCCAACACAACATCTTGAAATTT 58.326 33.333 0.00 0.00 0.00 1.82
3975 4565 5.163426 TGAGCCAACACAACATCTTGAAATT 60.163 36.000 0.00 0.00 0.00 1.82
3976 4566 4.341806 TGAGCCAACACAACATCTTGAAAT 59.658 37.500 0.00 0.00 0.00 2.17
3977 4567 3.698539 TGAGCCAACACAACATCTTGAAA 59.301 39.130 0.00 0.00 0.00 2.69
3978 4568 3.286353 TGAGCCAACACAACATCTTGAA 58.714 40.909 0.00 0.00 0.00 2.69
3979 4569 2.929641 TGAGCCAACACAACATCTTGA 58.070 42.857 0.00 0.00 0.00 3.02
3980 4570 3.713858 TTGAGCCAACACAACATCTTG 57.286 42.857 0.00 0.00 0.00 3.02
3981 4571 4.147321 AGATTGAGCCAACACAACATCTT 58.853 39.130 0.00 0.00 0.00 2.40
3982 4572 3.755378 GAGATTGAGCCAACACAACATCT 59.245 43.478 0.00 0.00 0.00 2.90
3983 4573 3.755378 AGAGATTGAGCCAACACAACATC 59.245 43.478 0.00 0.00 0.00 3.06
3984 4574 3.759581 AGAGATTGAGCCAACACAACAT 58.240 40.909 0.00 0.00 0.00 2.71
3985 4575 3.213206 AGAGATTGAGCCAACACAACA 57.787 42.857 0.00 0.00 0.00 3.33
3986 4576 3.304928 CCAAGAGATTGAGCCAACACAAC 60.305 47.826 0.00 0.00 0.00 3.32
3987 4577 2.886523 CCAAGAGATTGAGCCAACACAA 59.113 45.455 0.00 0.00 0.00 3.33
3988 4578 2.106338 TCCAAGAGATTGAGCCAACACA 59.894 45.455 0.00 0.00 0.00 3.72
3989 4579 2.746362 CTCCAAGAGATTGAGCCAACAC 59.254 50.000 0.00 0.00 0.00 3.32
3990 4580 2.639347 TCTCCAAGAGATTGAGCCAACA 59.361 45.455 0.00 0.00 33.35 3.33
3991 4581 3.340814 TCTCCAAGAGATTGAGCCAAC 57.659 47.619 0.00 0.00 33.35 3.77
3992 4582 3.882444 CATCTCCAAGAGATTGAGCCAA 58.118 45.455 4.35 0.00 45.86 4.52
3993 4583 2.421107 GCATCTCCAAGAGATTGAGCCA 60.421 50.000 4.35 0.00 45.86 4.75
3994 4584 2.158784 AGCATCTCCAAGAGATTGAGCC 60.159 50.000 4.35 0.00 45.86 4.70
3995 4585 3.132925 GAGCATCTCCAAGAGATTGAGC 58.867 50.000 4.35 5.95 45.86 4.26
3996 4586 4.121317 GTGAGCATCTCCAAGAGATTGAG 58.879 47.826 4.35 0.00 45.86 3.02
3997 4587 3.516700 TGTGAGCATCTCCAAGAGATTGA 59.483 43.478 4.35 0.00 45.86 2.57
3998 4588 3.870274 TGTGAGCATCTCCAAGAGATTG 58.130 45.455 4.35 2.88 45.86 2.67
3999 4589 3.118334 CCTGTGAGCATCTCCAAGAGATT 60.118 47.826 4.35 0.00 45.86 2.40
4001 4591 1.829849 CCTGTGAGCATCTCCAAGAGA 59.170 52.381 0.00 0.00 43.20 3.10
4002 4592 1.134461 CCCTGTGAGCATCTCCAAGAG 60.134 57.143 0.00 0.00 34.92 2.85
4003 4593 0.907486 CCCTGTGAGCATCTCCAAGA 59.093 55.000 0.00 0.00 34.92 3.02
4004 4594 0.907486 TCCCTGTGAGCATCTCCAAG 59.093 55.000 0.00 0.00 34.92 3.61
4005 4595 1.588239 ATCCCTGTGAGCATCTCCAA 58.412 50.000 0.00 0.00 34.92 3.53
4006 4596 2.323599 CTATCCCTGTGAGCATCTCCA 58.676 52.381 0.00 0.00 34.92 3.86
4007 4597 2.036992 CACTATCCCTGTGAGCATCTCC 59.963 54.545 0.00 0.00 37.60 3.71
4008 4598 2.697751 ACACTATCCCTGTGAGCATCTC 59.302 50.000 0.00 0.00 38.65 2.75
4009 4599 2.433604 CACACTATCCCTGTGAGCATCT 59.566 50.000 0.00 0.00 41.43 2.90
4010 4600 2.169352 ACACACTATCCCTGTGAGCATC 59.831 50.000 5.58 0.00 41.43 3.91
4011 4601 2.093288 CACACACTATCCCTGTGAGCAT 60.093 50.000 5.58 0.00 41.43 3.79
4012 4602 1.276138 CACACACTATCCCTGTGAGCA 59.724 52.381 5.58 0.00 41.43 4.26
4013 4603 1.276421 ACACACACTATCCCTGTGAGC 59.724 52.381 5.58 0.00 41.43 4.26
4014 4604 2.300152 ACACACACACTATCCCTGTGAG 59.700 50.000 5.58 0.44 41.43 3.51
4015 4605 2.325484 ACACACACACTATCCCTGTGA 58.675 47.619 5.58 0.00 41.43 3.58
4016 4606 2.839486 ACACACACACTATCCCTGTG 57.161 50.000 0.00 0.00 43.99 3.66
4017 4607 5.245531 CAATTACACACACACTATCCCTGT 58.754 41.667 0.00 0.00 0.00 4.00
4018 4608 4.094887 GCAATTACACACACACTATCCCTG 59.905 45.833 0.00 0.00 0.00 4.45
4019 4609 4.261801 GCAATTACACACACACTATCCCT 58.738 43.478 0.00 0.00 0.00 4.20
4020 4610 4.616181 GCAATTACACACACACTATCCC 57.384 45.455 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.