Multiple sequence alignment - TraesCS7B01G268600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G268600 chr7B 100.000 3479 0 0 1 3479 491915494 491912016 0.000000e+00 6425
1 TraesCS7B01G268600 chr7B 79.463 633 103 18 1 617 175995412 175994791 1.150000e-114 424
2 TraesCS7B01G268600 chr7B 87.730 163 13 5 2457 2613 160645079 160645240 2.130000e-42 183
3 TraesCS7B01G268600 chr7B 86.957 161 16 4 2457 2613 97758971 97758812 3.570000e-40 176
4 TraesCS7B01G268600 chr7D 98.063 2117 31 4 341 2455 468506862 468504754 0.000000e+00 3674
5 TraesCS7B01G268600 chr7D 96.883 385 10 2 1 384 468507236 468506853 0.000000e+00 643
6 TraesCS7B01G268600 chr7D 90.819 403 31 6 2978 3378 602797268 602797666 5.110000e-148 534
7 TraesCS7B01G268600 chr7D 93.793 290 7 3 2624 2910 468504757 468504476 3.210000e-115 425
8 TraesCS7B01G268600 chr7D 96.000 125 5 0 3355 3479 111212134 111212258 1.640000e-48 204
9 TraesCS7B01G268600 chr7D 96.000 125 5 0 3355 3479 630439079 630438955 1.640000e-48 204
10 TraesCS7B01G268600 chr7D 88.199 161 14 4 2457 2613 498667638 498667797 1.650000e-43 187
11 TraesCS7B01G268600 chr7A 93.956 364 21 1 3012 3374 693905670 693905307 1.830000e-152 549
12 TraesCS7B01G268600 chr7A 80.882 612 100 10 1 598 715930845 715931453 1.890000e-127 466
13 TraesCS7B01G268600 chr6D 91.709 398 28 5 2984 3378 466598724 466599119 6.570000e-152 547
14 TraesCS7B01G268600 chr6D 90.955 398 31 5 2984 3378 81701544 81701939 6.610000e-147 531
15 TraesCS7B01G268600 chr6D 83.455 411 62 6 1 409 97771284 97771690 9.110000e-101 377
16 TraesCS7B01G268600 chr6D 84.397 141 20 2 1 140 327725077 327724938 1.680000e-28 137
17 TraesCS7B01G268600 chr2D 91.709 398 28 5 2984 3378 334926239 334925844 6.570000e-152 547
18 TraesCS7B01G268600 chr2D 90.887 406 31 6 2985 3386 584772596 584772193 1.100000e-149 540
19 TraesCS7B01G268600 chr2D 91.206 398 30 5 2984 3378 508227177 508227572 1.420000e-148 536
20 TraesCS7B01G268600 chr2D 96.800 125 4 0 3355 3479 129372590 129372714 3.520000e-50 209
21 TraesCS7B01G268600 chr2D 96.800 125 4 0 3355 3479 277049309 277049433 3.520000e-50 209
22 TraesCS7B01G268600 chr4D 92.348 379 27 2 3001 3378 6747421 6747798 3.950000e-149 538
23 TraesCS7B01G268600 chr4D 90.955 398 31 5 2984 3378 329894732 329894337 6.610000e-147 531
24 TraesCS7B01G268600 chr4D 90.345 145 12 2 3336 3479 44623125 44623268 4.580000e-44 189
25 TraesCS7B01G268600 chr4D 87.500 160 17 2 2457 2613 272889939 272890098 7.670000e-42 182
26 TraesCS7B01G268600 chr6B 81.464 642 100 10 1 629 51135317 51134682 3.100000e-140 508
27 TraesCS7B01G268600 chr6B 86.875 160 16 4 2457 2613 242941398 242941555 1.280000e-39 174
28 TraesCS7B01G268600 chr5B 80.997 642 103 10 1 629 450043401 450044036 3.120000e-135 492
29 TraesCS7B01G268600 chr5B 85.405 185 17 8 2457 2634 636717803 636717622 2.130000e-42 183
30 TraesCS7B01G268600 chr5B 84.409 186 25 2 129 311 579071657 579071841 2.760000e-41 180
31 TraesCS7B01G268600 chr4B 79.809 629 110 10 1 614 428487029 428486403 3.190000e-120 442
32 TraesCS7B01G268600 chr4B 86.250 160 15 5 2460 2613 161725470 161725312 2.150000e-37 167
33 TraesCS7B01G268600 chr3B 84.223 431 64 4 1 430 694178271 694177844 1.930000e-112 416
34 TraesCS7B01G268600 chr2B 78.964 618 104 13 1 604 349932533 349933138 7.000000e-107 398
35 TraesCS7B01G268600 chr6A 80.561 535 75 15 1 517 556888774 556889297 5.450000e-103 385
36 TraesCS7B01G268600 chr5D 84.225 355 51 5 1 352 530850622 530850974 1.200000e-89 340
37 TraesCS7B01G268600 chr3D 96.032 126 4 1 3355 3479 600704879 600705004 1.640000e-48 204
38 TraesCS7B01G268600 chr3D 84.783 184 27 1 1 183 581083808 581083625 2.130000e-42 183
39 TraesCS7B01G268600 chr1D 96.032 126 4 1 3355 3479 435924694 435924819 1.640000e-48 204
40 TraesCS7B01G268600 chr1D 88.125 160 14 3 2457 2613 86987058 86986901 5.930000e-43 185
41 TraesCS7B01G268600 chr2A 91.489 141 11 1 3339 3479 582285575 582285436 3.540000e-45 193
42 TraesCS7B01G268600 chr1A 90.411 146 10 4 3336 3479 59240958 59240815 4.580000e-44 189
43 TraesCS7B01G268600 chr1B 88.125 160 16 2 2457 2613 405361565 405361406 1.650000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G268600 chr7B 491912016 491915494 3478 True 6425.000000 6425 100.000000 1 3479 1 chr7B.!!$R3 3478
1 TraesCS7B01G268600 chr7B 175994791 175995412 621 True 424.000000 424 79.463000 1 617 1 chr7B.!!$R2 616
2 TraesCS7B01G268600 chr7D 468504476 468507236 2760 True 1580.666667 3674 96.246333 1 2910 3 chr7D.!!$R2 2909
3 TraesCS7B01G268600 chr7A 715930845 715931453 608 False 466.000000 466 80.882000 1 598 1 chr7A.!!$F1 597
4 TraesCS7B01G268600 chr6B 51134682 51135317 635 True 508.000000 508 81.464000 1 629 1 chr6B.!!$R1 628
5 TraesCS7B01G268600 chr5B 450043401 450044036 635 False 492.000000 492 80.997000 1 629 1 chr5B.!!$F1 628
6 TraesCS7B01G268600 chr4B 428486403 428487029 626 True 442.000000 442 79.809000 1 614 1 chr4B.!!$R2 613
7 TraesCS7B01G268600 chr2B 349932533 349933138 605 False 398.000000 398 78.964000 1 604 1 chr2B.!!$F1 603
8 TraesCS7B01G268600 chr6A 556888774 556889297 523 False 385.000000 385 80.561000 1 517 1 chr6A.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 444 0.106217 CAAGGAACCACAACCACCCT 60.106 55.000 0.00 0.00 0.00 4.34 F
1014 1091 1.227645 TGCTATGATGGTGCGCCTC 60.228 57.895 18.96 12.77 35.27 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2292 2369 0.179127 TCTTGAGATCCAGCGCGAAG 60.179 55.0 12.1 0.29 0.0 3.79 R
2909 2988 0.104120 TACACACACAGAGCTTGCGT 59.896 50.0 0.0 0.00 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 89 1.528309 CGGAGGCAACCACCAACTT 60.528 57.895 0.98 0.00 33.81 2.66
221 235 2.430244 GTCGCACATGACGGACGT 60.430 61.111 0.00 0.00 0.00 4.34
265 279 3.323758 AATTAGCCTCGCACCGCCA 62.324 57.895 0.00 0.00 0.00 5.69
385 444 0.106217 CAAGGAACCACAACCACCCT 60.106 55.000 0.00 0.00 0.00 4.34
412 472 2.149383 AGCAAGGTCCAGGACTGCA 61.149 57.895 27.42 0.00 36.58 4.41
504 566 3.314331 CACCACCGGGAGAGCACT 61.314 66.667 6.32 0.00 38.05 4.40
658 733 2.703007 CCCCATTTGACAAACCCAAAGA 59.297 45.455 1.94 0.00 37.00 2.52
662 737 4.570369 CCATTTGACAAACCCAAAGAACAC 59.430 41.667 1.94 0.00 37.00 3.32
840 917 8.636213 AGAATTGTTATTCCATCAATGCTTAGG 58.364 33.333 0.00 0.00 40.91 2.69
841 918 8.537728 AATTGTTATTCCATCAATGCTTAGGA 57.462 30.769 0.00 0.00 33.04 2.94
842 919 6.942532 TGTTATTCCATCAATGCTTAGGAC 57.057 37.500 0.00 0.00 0.00 3.85
843 920 6.422333 TGTTATTCCATCAATGCTTAGGACA 58.578 36.000 0.00 0.00 0.00 4.02
844 921 7.062322 TGTTATTCCATCAATGCTTAGGACAT 58.938 34.615 0.00 0.00 0.00 3.06
997 1074 2.167684 CACGCGCGTACAGTTGTG 59.832 61.111 37.24 17.14 0.00 3.33
998 1075 3.698463 ACGCGCGTACAGTTGTGC 61.698 61.111 37.08 1.84 38.21 4.57
999 1076 3.403057 CGCGCGTACAGTTGTGCT 61.403 61.111 24.19 0.00 39.38 4.40
1006 1083 2.285220 GCGTACAGTTGTGCTATGATGG 59.715 50.000 0.00 0.00 0.00 3.51
1014 1091 1.227645 TGCTATGATGGTGCGCCTC 60.228 57.895 18.96 12.77 35.27 4.70
1775 1852 2.047179 GCGGGAGTGGGACTTCAC 60.047 66.667 0.00 0.00 37.89 3.18
1821 1898 2.852495 TTCGCCAATCCTGGACGAGC 62.852 60.000 0.00 0.65 46.92 5.03
1831 1908 2.107953 GGACGAGCCTGGAGATGC 59.892 66.667 0.00 0.00 0.00 3.91
2314 2391 1.880340 GCGCTGGATCTCAAGACCG 60.880 63.158 0.00 0.00 0.00 4.79
2378 2455 2.028112 AGTTCTGTGCGAGGAATGCTTA 60.028 45.455 0.00 0.00 0.00 3.09
2379 2456 2.939103 GTTCTGTGCGAGGAATGCTTAT 59.061 45.455 0.00 0.00 0.00 1.73
2380 2457 4.119862 GTTCTGTGCGAGGAATGCTTATA 58.880 43.478 0.00 0.00 0.00 0.98
2455 2532 4.615452 CGTCCCCAAGCGATAATACTAGAC 60.615 50.000 0.00 0.00 0.00 2.59
2456 2533 3.504906 TCCCCAAGCGATAATACTAGACG 59.495 47.826 0.00 0.00 0.00 4.18
2457 2534 3.367087 CCCCAAGCGATAATACTAGACGG 60.367 52.174 0.00 0.00 0.00 4.79
2458 2535 3.367087 CCCAAGCGATAATACTAGACGGG 60.367 52.174 0.00 0.00 0.00 5.28
2459 2536 3.255149 CCAAGCGATAATACTAGACGGGT 59.745 47.826 0.00 0.00 0.00 5.28
2460 2537 4.474113 CAAGCGATAATACTAGACGGGTC 58.526 47.826 0.00 0.00 0.00 4.46
2461 2538 4.018484 AGCGATAATACTAGACGGGTCT 57.982 45.455 6.57 6.57 43.40 3.85
2462 2539 4.002316 AGCGATAATACTAGACGGGTCTC 58.998 47.826 4.30 0.00 40.93 3.36
2463 2540 4.002316 GCGATAATACTAGACGGGTCTCT 58.998 47.826 4.30 0.00 40.93 3.10
2464 2541 4.093261 GCGATAATACTAGACGGGTCTCTC 59.907 50.000 4.30 0.00 40.93 3.20
2465 2542 5.481105 CGATAATACTAGACGGGTCTCTCT 58.519 45.833 4.30 0.00 40.93 3.10
2466 2543 6.629128 CGATAATACTAGACGGGTCTCTCTA 58.371 44.000 4.30 0.00 40.93 2.43
2467 2544 6.753279 CGATAATACTAGACGGGTCTCTCTAG 59.247 46.154 4.30 0.00 41.25 2.43
2468 2545 4.895668 ATACTAGACGGGTCTCTCTAGG 57.104 50.000 4.30 0.00 40.22 3.02
2469 2546 2.761809 ACTAGACGGGTCTCTCTAGGA 58.238 52.381 4.30 0.00 40.22 2.94
2470 2547 2.435437 ACTAGACGGGTCTCTCTAGGAC 59.565 54.545 4.30 0.00 40.22 3.85
2471 2548 1.287217 AGACGGGTCTCTCTAGGACA 58.713 55.000 0.00 0.00 34.17 4.02
2472 2549 1.065272 AGACGGGTCTCTCTAGGACAC 60.065 57.143 0.00 0.00 34.17 3.67
2473 2550 0.697079 ACGGGTCTCTCTAGGACACA 59.303 55.000 1.55 0.00 36.98 3.72
2474 2551 1.285373 ACGGGTCTCTCTAGGACACAT 59.715 52.381 1.55 0.00 36.98 3.21
2475 2552 1.950909 CGGGTCTCTCTAGGACACATC 59.049 57.143 1.55 0.00 36.98 3.06
2476 2553 2.422235 CGGGTCTCTCTAGGACACATCT 60.422 54.545 1.55 0.00 36.98 2.90
2477 2554 3.181453 CGGGTCTCTCTAGGACACATCTA 60.181 52.174 1.55 0.00 36.98 1.98
2478 2555 4.394729 GGGTCTCTCTAGGACACATCTAG 58.605 52.174 0.00 0.00 37.11 2.43
2479 2556 4.103469 GGGTCTCTCTAGGACACATCTAGA 59.897 50.000 0.00 0.00 40.38 2.43
2480 2557 5.222048 GGGTCTCTCTAGGACACATCTAGAT 60.222 48.000 0.00 0.00 41.37 1.98
2481 2558 5.705441 GGTCTCTCTAGGACACATCTAGATG 59.295 48.000 27.63 27.63 41.37 2.90
2507 2584 6.798427 ACATACTCATGTCACATCTAAGGT 57.202 37.500 0.00 0.00 41.75 3.50
2508 2585 6.577103 ACATACTCATGTCACATCTAAGGTG 58.423 40.000 0.00 0.00 41.75 4.00
2509 2586 6.381133 ACATACTCATGTCACATCTAAGGTGA 59.619 38.462 0.00 0.00 41.75 4.02
2510 2587 5.946942 ACTCATGTCACATCTAAGGTGAT 57.053 39.130 0.00 0.00 46.01 3.06
2511 2588 5.668471 ACTCATGTCACATCTAAGGTGATG 58.332 41.667 0.00 0.00 46.01 3.07
2520 2597 4.691175 CATCTAAGGTGATGTCCACTCTG 58.309 47.826 0.00 0.00 45.03 3.35
2521 2598 3.779444 TCTAAGGTGATGTCCACTCTGT 58.221 45.455 0.00 0.00 45.03 3.41
2522 2599 4.160329 TCTAAGGTGATGTCCACTCTGTT 58.840 43.478 0.00 0.00 45.03 3.16
2523 2600 3.864789 AAGGTGATGTCCACTCTGTTT 57.135 42.857 0.00 0.00 45.03 2.83
2524 2601 3.131709 AGGTGATGTCCACTCTGTTTG 57.868 47.619 0.00 0.00 45.03 2.93
2525 2602 2.439507 AGGTGATGTCCACTCTGTTTGT 59.560 45.455 0.00 0.00 45.03 2.83
2526 2603 2.549754 GGTGATGTCCACTCTGTTTGTG 59.450 50.000 0.00 0.00 45.03 3.33
2580 2657 5.694231 TGCTGCTGCATTATATTTGTAGG 57.306 39.130 14.93 0.00 45.31 3.18
2581 2658 5.375773 TGCTGCTGCATTATATTTGTAGGA 58.624 37.500 14.93 2.91 45.31 2.94
2582 2659 5.471116 TGCTGCTGCATTATATTTGTAGGAG 59.529 40.000 14.93 15.37 45.31 3.69
2583 2660 5.936054 CTGCTGCATTATATTTGTAGGAGC 58.064 41.667 1.31 0.00 38.13 4.70
2584 2661 5.624159 TGCTGCATTATATTTGTAGGAGCT 58.376 37.500 0.00 0.00 0.00 4.09
2585 2662 6.064060 TGCTGCATTATATTTGTAGGAGCTT 58.936 36.000 0.00 0.00 0.00 3.74
2586 2663 7.223584 TGCTGCATTATATTTGTAGGAGCTTA 58.776 34.615 0.00 0.00 0.00 3.09
2587 2664 7.719193 TGCTGCATTATATTTGTAGGAGCTTAA 59.281 33.333 0.00 0.00 0.00 1.85
2588 2665 8.567948 GCTGCATTATATTTGTAGGAGCTTAAA 58.432 33.333 0.00 0.00 0.00 1.52
2598 2675 8.677148 TTTGTAGGAGCTTAAATGTGATATCC 57.323 34.615 0.00 0.00 0.00 2.59
2599 2676 7.618019 TGTAGGAGCTTAAATGTGATATCCT 57.382 36.000 0.00 0.00 39.25 3.24
2600 2677 8.034313 TGTAGGAGCTTAAATGTGATATCCTT 57.966 34.615 0.00 0.00 37.18 3.36
2601 2678 9.154632 TGTAGGAGCTTAAATGTGATATCCTTA 57.845 33.333 0.00 0.00 37.18 2.69
2602 2679 9.998106 GTAGGAGCTTAAATGTGATATCCTTAA 57.002 33.333 0.00 0.00 37.18 1.85
2604 2681 9.920946 AGGAGCTTAAATGTGATATCCTTAAAA 57.079 29.630 0.00 0.00 31.97 1.52
2649 2726 2.654912 CTGGCAACGAACGACCGAC 61.655 63.158 8.04 0.00 42.51 4.79
2714 2793 3.616219 CAATCAAATCCTAACCACCCGA 58.384 45.455 0.00 0.00 0.00 5.14
2726 2805 0.613260 CCACCCGACAAATCCTCAGA 59.387 55.000 0.00 0.00 0.00 3.27
2768 2847 3.187700 CATTACTCGGTCACCAAGCTAC 58.812 50.000 0.00 0.00 0.00 3.58
2835 2914 8.833231 TCAGGAGTTTATTCTCTTGTTGTAAG 57.167 34.615 5.91 0.00 40.70 2.34
2836 2915 8.429641 TCAGGAGTTTATTCTCTTGTTGTAAGT 58.570 33.333 5.91 0.00 40.70 2.24
2837 2916 9.057089 CAGGAGTTTATTCTCTTGTTGTAAGTT 57.943 33.333 0.00 0.00 36.98 2.66
2838 2917 9.628500 AGGAGTTTATTCTCTTGTTGTAAGTTT 57.372 29.630 0.00 0.00 35.11 2.66
2839 2918 9.665264 GGAGTTTATTCTCTTGTTGTAAGTTTG 57.335 33.333 0.00 0.00 35.11 2.93
2917 2996 4.329462 TTTTGGGATTTTTACGCAAGCT 57.671 36.364 0.00 0.00 40.22 3.74
2918 2997 3.569250 TTGGGATTTTTACGCAAGCTC 57.431 42.857 0.00 0.00 45.62 4.09
2919 2998 2.790433 TGGGATTTTTACGCAAGCTCT 58.210 42.857 0.00 0.00 45.62 4.09
2920 2999 2.487762 TGGGATTTTTACGCAAGCTCTG 59.512 45.455 0.00 0.00 45.62 3.35
2921 3000 2.488153 GGGATTTTTACGCAAGCTCTGT 59.512 45.455 0.00 0.00 45.62 3.41
2922 3001 3.492313 GGATTTTTACGCAAGCTCTGTG 58.508 45.455 7.59 7.59 45.62 3.66
2927 3006 3.723172 CGCAAGCTCTGTGTGTGT 58.277 55.556 0.00 0.00 0.00 3.72
2928 3007 2.899153 CGCAAGCTCTGTGTGTGTA 58.101 52.632 0.00 0.00 0.00 2.90
2929 3008 1.432514 CGCAAGCTCTGTGTGTGTAT 58.567 50.000 0.00 0.00 0.00 2.29
2930 3009 2.606108 CGCAAGCTCTGTGTGTGTATA 58.394 47.619 0.00 0.00 0.00 1.47
2931 3010 3.190079 CGCAAGCTCTGTGTGTGTATAT 58.810 45.455 0.00 0.00 0.00 0.86
2932 3011 4.359706 CGCAAGCTCTGTGTGTGTATATA 58.640 43.478 0.00 0.00 0.00 0.86
2933 3012 4.984785 CGCAAGCTCTGTGTGTGTATATAT 59.015 41.667 0.00 0.00 0.00 0.86
2934 3013 6.149633 CGCAAGCTCTGTGTGTGTATATATA 58.850 40.000 0.00 0.00 0.00 0.86
2935 3014 6.808704 CGCAAGCTCTGTGTGTGTATATATAT 59.191 38.462 0.00 0.00 0.00 0.86
2936 3015 7.968405 CGCAAGCTCTGTGTGTGTATATATATA 59.032 37.037 0.00 0.00 0.00 0.86
2937 3016 9.639601 GCAAGCTCTGTGTGTGTATATATATAA 57.360 33.333 3.96 0.00 0.00 0.98
2939 3018 9.862371 AAGCTCTGTGTGTGTATATATATAAGC 57.138 33.333 3.96 6.60 0.00 3.09
2940 3019 9.025041 AGCTCTGTGTGTGTATATATATAAGCA 57.975 33.333 14.90 9.98 0.00 3.91
2941 3020 9.639601 GCTCTGTGTGTGTATATATATAAGCAA 57.360 33.333 3.96 0.00 0.00 3.91
2957 3036 3.831715 AGCAAACCTATGAAACTTCGC 57.168 42.857 0.00 0.00 0.00 4.70
2958 3037 3.412386 AGCAAACCTATGAAACTTCGCT 58.588 40.909 0.00 0.00 0.00 4.93
2959 3038 3.437049 AGCAAACCTATGAAACTTCGCTC 59.563 43.478 0.00 0.00 0.00 5.03
2960 3039 3.725010 GCAAACCTATGAAACTTCGCTCG 60.725 47.826 0.00 0.00 0.00 5.03
2961 3040 2.295253 ACCTATGAAACTTCGCTCGG 57.705 50.000 0.00 0.00 0.00 4.63
2962 3041 1.134788 ACCTATGAAACTTCGCTCGGG 60.135 52.381 0.00 0.00 0.00 5.14
2963 3042 0.931005 CTATGAAACTTCGCTCGGGC 59.069 55.000 0.00 0.00 0.00 6.13
2974 3053 2.823628 GCTCGGGCGGTATGTATTC 58.176 57.895 0.00 0.00 0.00 1.75
2975 3054 0.317479 GCTCGGGCGGTATGTATTCT 59.683 55.000 0.00 0.00 0.00 2.40
2976 3055 1.669211 GCTCGGGCGGTATGTATTCTC 60.669 57.143 0.00 0.00 0.00 2.87
2977 3056 1.887198 CTCGGGCGGTATGTATTCTCT 59.113 52.381 0.00 0.00 0.00 3.10
2978 3057 2.296471 CTCGGGCGGTATGTATTCTCTT 59.704 50.000 0.00 0.00 0.00 2.85
2979 3058 2.035449 TCGGGCGGTATGTATTCTCTTG 59.965 50.000 0.00 0.00 0.00 3.02
2980 3059 2.223971 CGGGCGGTATGTATTCTCTTGT 60.224 50.000 0.00 0.00 0.00 3.16
2981 3060 3.740141 CGGGCGGTATGTATTCTCTTGTT 60.740 47.826 0.00 0.00 0.00 2.83
2982 3061 3.560068 GGGCGGTATGTATTCTCTTGTTG 59.440 47.826 0.00 0.00 0.00 3.33
2983 3062 4.189231 GGCGGTATGTATTCTCTTGTTGT 58.811 43.478 0.00 0.00 0.00 3.32
2984 3063 5.353938 GGCGGTATGTATTCTCTTGTTGTA 58.646 41.667 0.00 0.00 0.00 2.41
2985 3064 5.989777 GGCGGTATGTATTCTCTTGTTGTAT 59.010 40.000 0.00 0.00 0.00 2.29
2986 3065 7.149973 GGCGGTATGTATTCTCTTGTTGTATA 58.850 38.462 0.00 0.00 0.00 1.47
2987 3066 7.817962 GGCGGTATGTATTCTCTTGTTGTATAT 59.182 37.037 0.00 0.00 0.00 0.86
2988 3067 9.850628 GCGGTATGTATTCTCTTGTTGTATATA 57.149 33.333 0.00 0.00 0.00 0.86
3018 3097 8.035394 AGTAACATTATAGGGTCATGCTATTCG 58.965 37.037 0.00 0.00 0.00 3.34
3019 3098 6.360370 ACATTATAGGGTCATGCTATTCGT 57.640 37.500 0.00 0.00 0.00 3.85
3020 3099 6.398918 ACATTATAGGGTCATGCTATTCGTC 58.601 40.000 0.00 0.00 0.00 4.20
3021 3100 6.014584 ACATTATAGGGTCATGCTATTCGTCA 60.015 38.462 0.00 0.00 0.00 4.35
3022 3101 2.604046 AGGGTCATGCTATTCGTCAC 57.396 50.000 0.00 0.00 0.00 3.67
3023 3102 1.139058 AGGGTCATGCTATTCGTCACC 59.861 52.381 0.00 0.00 0.00 4.02
3024 3103 1.583054 GGTCATGCTATTCGTCACCC 58.417 55.000 0.00 0.00 0.00 4.61
3025 3104 1.139058 GGTCATGCTATTCGTCACCCT 59.861 52.381 0.00 0.00 0.00 4.34
3026 3105 2.205074 GTCATGCTATTCGTCACCCTG 58.795 52.381 0.00 0.00 0.00 4.45
3027 3106 1.138859 TCATGCTATTCGTCACCCTGG 59.861 52.381 0.00 0.00 0.00 4.45
3028 3107 0.469917 ATGCTATTCGTCACCCTGGG 59.530 55.000 12.28 12.28 0.00 4.45
3029 3108 0.907704 TGCTATTCGTCACCCTGGGT 60.908 55.000 14.05 14.05 35.62 4.51
3040 3119 2.361085 ACCCTGGGTGAGGAATAGTT 57.639 50.000 19.82 0.00 46.33 2.24
3041 3120 3.502051 ACCCTGGGTGAGGAATAGTTA 57.498 47.619 19.82 0.00 46.33 2.24
3042 3121 4.022359 ACCCTGGGTGAGGAATAGTTAT 57.978 45.455 19.82 0.00 46.33 1.89
3043 3122 4.380791 ACCCTGGGTGAGGAATAGTTATT 58.619 43.478 19.82 0.00 46.33 1.40
3044 3123 4.412528 ACCCTGGGTGAGGAATAGTTATTC 59.587 45.833 19.82 3.75 46.33 1.75
3045 3124 4.660771 CCCTGGGTGAGGAATAGTTATTCT 59.339 45.833 3.97 0.00 46.33 2.40
3046 3125 5.132816 CCCTGGGTGAGGAATAGTTATTCTT 59.867 44.000 3.97 4.41 46.33 2.52
3047 3126 6.292150 CCTGGGTGAGGAATAGTTATTCTTC 58.708 44.000 13.90 13.90 46.33 2.87
3052 3131 6.248569 TGAGGAATAGTTATTCTTCACCCC 57.751 41.667 17.60 0.81 46.85 4.95
3053 3132 5.132144 TGAGGAATAGTTATTCTTCACCCCC 59.868 44.000 17.60 0.23 46.85 5.40
3054 3133 5.297799 AGGAATAGTTATTCTTCACCCCCT 58.702 41.667 10.71 0.00 41.33 4.79
3055 3134 5.736616 AGGAATAGTTATTCTTCACCCCCTT 59.263 40.000 10.71 0.00 41.33 3.95
3056 3135 6.219772 AGGAATAGTTATTCTTCACCCCCTTT 59.780 38.462 10.71 0.00 41.33 3.11
3057 3136 6.546403 GGAATAGTTATTCTTCACCCCCTTTC 59.454 42.308 10.71 0.00 41.33 2.62
3058 3137 6.910259 ATAGTTATTCTTCACCCCCTTTCT 57.090 37.500 0.00 0.00 0.00 2.52
3059 3138 8.401955 AATAGTTATTCTTCACCCCCTTTCTA 57.598 34.615 0.00 0.00 0.00 2.10
3060 3139 6.910259 AGTTATTCTTCACCCCCTTTCTAT 57.090 37.500 0.00 0.00 0.00 1.98
3061 3140 7.285340 AGTTATTCTTCACCCCCTTTCTATT 57.715 36.000 0.00 0.00 0.00 1.73
3062 3141 7.709601 AGTTATTCTTCACCCCCTTTCTATTT 58.290 34.615 0.00 0.00 0.00 1.40
3063 3142 8.177456 AGTTATTCTTCACCCCCTTTCTATTTT 58.823 33.333 0.00 0.00 0.00 1.82
3064 3143 6.857437 ATTCTTCACCCCCTTTCTATTTTG 57.143 37.500 0.00 0.00 0.00 2.44
3065 3144 5.592587 TCTTCACCCCCTTTCTATTTTGA 57.407 39.130 0.00 0.00 0.00 2.69
3066 3145 5.321927 TCTTCACCCCCTTTCTATTTTGAC 58.678 41.667 0.00 0.00 0.00 3.18
3067 3146 3.681593 TCACCCCCTTTCTATTTTGACG 58.318 45.455 0.00 0.00 0.00 4.35
3068 3147 3.073356 TCACCCCCTTTCTATTTTGACGT 59.927 43.478 0.00 0.00 0.00 4.34
3069 3148 3.439129 CACCCCCTTTCTATTTTGACGTC 59.561 47.826 9.11 9.11 0.00 4.34
3070 3149 3.073356 ACCCCCTTTCTATTTTGACGTCA 59.927 43.478 15.76 15.76 0.00 4.35
3071 3150 4.076394 CCCCCTTTCTATTTTGACGTCAA 58.924 43.478 26.53 26.53 0.00 3.18
3072 3151 4.705023 CCCCCTTTCTATTTTGACGTCAAT 59.295 41.667 30.10 19.28 35.55 2.57
3073 3152 5.883673 CCCCCTTTCTATTTTGACGTCAATA 59.116 40.000 30.10 25.37 35.55 1.90
3074 3153 6.183360 CCCCCTTTCTATTTTGACGTCAATAC 60.183 42.308 30.10 0.00 35.55 1.89
3075 3154 6.373216 CCCCTTTCTATTTTGACGTCAATACA 59.627 38.462 30.10 15.15 35.55 2.29
3076 3155 7.241376 CCCTTTCTATTTTGACGTCAATACAC 58.759 38.462 30.10 0.00 35.55 2.90
3077 3156 7.241376 CCTTTCTATTTTGACGTCAATACACC 58.759 38.462 30.10 0.00 35.55 4.16
3078 3157 6.397831 TTCTATTTTGACGTCAATACACCG 57.602 37.500 30.10 16.47 35.55 4.94
3079 3158 5.472148 TCTATTTTGACGTCAATACACCGT 58.528 37.500 30.10 13.26 35.55 4.83
3080 3159 6.619744 TCTATTTTGACGTCAATACACCGTA 58.380 36.000 30.10 11.18 35.55 4.02
3081 3160 7.259882 TCTATTTTGACGTCAATACACCGTAT 58.740 34.615 30.10 11.94 35.55 3.06
3082 3161 6.730960 ATTTTGACGTCAATACACCGTATT 57.269 33.333 30.10 7.72 35.55 1.89
3083 3162 6.542574 TTTTGACGTCAATACACCGTATTT 57.457 33.333 30.10 0.00 35.55 1.40
3084 3163 6.542574 TTTGACGTCAATACACCGTATTTT 57.457 33.333 30.10 0.00 35.55 1.82
3085 3164 6.542574 TTGACGTCAATACACCGTATTTTT 57.457 33.333 26.53 0.00 34.51 1.94
3086 3165 7.649370 TTGACGTCAATACACCGTATTTTTA 57.351 32.000 26.53 0.00 34.51 1.52
3087 3166 7.280730 TGACGTCAATACACCGTATTTTTAG 57.719 36.000 17.62 0.00 34.51 1.85
3088 3167 6.310956 TGACGTCAATACACCGTATTTTTAGG 59.689 38.462 17.62 0.00 34.51 2.69
3089 3168 6.165577 ACGTCAATACACCGTATTTTTAGGT 58.834 36.000 0.00 0.00 39.12 3.08
3090 3169 6.650390 ACGTCAATACACCGTATTTTTAGGTT 59.350 34.615 0.00 0.00 35.85 3.50
3091 3170 7.173047 ACGTCAATACACCGTATTTTTAGGTTT 59.827 33.333 0.00 0.00 35.85 3.27
3092 3171 7.689400 CGTCAATACACCGTATTTTTAGGTTTC 59.311 37.037 0.00 0.00 35.85 2.78
3093 3172 7.689400 GTCAATACACCGTATTTTTAGGTTTCG 59.311 37.037 0.00 0.00 35.85 3.46
3094 3173 7.387397 TCAATACACCGTATTTTTAGGTTTCGT 59.613 33.333 0.00 0.00 35.85 3.85
3095 3174 8.655092 CAATACACCGTATTTTTAGGTTTCGTA 58.345 33.333 0.00 0.00 35.85 3.43
3096 3175 8.770438 ATACACCGTATTTTTAGGTTTCGTAA 57.230 30.769 0.00 0.00 35.85 3.18
3097 3176 7.489574 ACACCGTATTTTTAGGTTTCGTAAA 57.510 32.000 0.00 0.00 35.85 2.01
3098 3177 8.098220 ACACCGTATTTTTAGGTTTCGTAAAT 57.902 30.769 0.00 0.00 35.85 1.40
3099 3178 8.567104 ACACCGTATTTTTAGGTTTCGTAAATT 58.433 29.630 0.00 0.00 35.85 1.82
3100 3179 9.396938 CACCGTATTTTTAGGTTTCGTAAATTT 57.603 29.630 0.00 0.00 35.85 1.82
3101 3180 9.964303 ACCGTATTTTTAGGTTTCGTAAATTTT 57.036 25.926 0.00 0.00 33.96 1.82
3151 3230 9.722056 AAACGTAAGAAAATATATACTCGTCGT 57.278 29.630 0.00 0.00 43.62 4.34
3205 3284 9.245284 GCAAACGTAAAAACATACATAAAATGC 57.755 29.630 0.00 0.00 0.00 3.56
3206 3285 9.442019 CAAACGTAAAAACATACATAAAATGCG 57.558 29.630 0.00 0.00 0.00 4.73
3207 3286 8.951954 AACGTAAAAACATACATAAAATGCGA 57.048 26.923 0.00 0.00 0.00 5.10
3208 3287 9.562583 AACGTAAAAACATACATAAAATGCGAT 57.437 25.926 0.00 0.00 0.00 4.58
3216 3295 9.897744 AACATACATAAAATGCGATATTTCTGG 57.102 29.630 0.00 0.00 0.00 3.86
3217 3296 9.066892 ACATACATAAAATGCGATATTTCTGGT 57.933 29.630 0.00 0.00 0.00 4.00
3218 3297 9.546909 CATACATAAAATGCGATATTTCTGGTC 57.453 33.333 0.00 0.00 0.00 4.02
3219 3298 7.807977 ACATAAAATGCGATATTTCTGGTCT 57.192 32.000 0.00 0.00 0.00 3.85
3220 3299 8.225603 ACATAAAATGCGATATTTCTGGTCTT 57.774 30.769 0.00 0.00 0.00 3.01
3221 3300 9.337396 ACATAAAATGCGATATTTCTGGTCTTA 57.663 29.630 0.00 0.00 0.00 2.10
3226 3305 7.907214 ATGCGATATTTCTGGTCTTATAACC 57.093 36.000 0.00 0.00 39.94 2.85
3227 3306 7.062749 TGCGATATTTCTGGTCTTATAACCT 57.937 36.000 0.00 0.00 40.20 3.50
3228 3307 8.185506 TGCGATATTTCTGGTCTTATAACCTA 57.814 34.615 0.00 0.00 40.20 3.08
3229 3308 8.812972 TGCGATATTTCTGGTCTTATAACCTAT 58.187 33.333 0.00 0.00 40.20 2.57
3230 3309 9.654663 GCGATATTTCTGGTCTTATAACCTATT 57.345 33.333 0.00 0.00 40.20 1.73
3282 3361 9.817809 ACGTAGTGAATCAATATGAATGTAACT 57.182 29.630 15.66 0.00 42.51 2.24
3357 3436 9.294030 CAGATGAAGAATAACTTATTTTGCACC 57.706 33.333 0.00 0.00 39.13 5.01
3358 3437 8.470002 AGATGAAGAATAACTTATTTTGCACCC 58.530 33.333 0.00 0.00 39.13 4.61
3359 3438 7.775053 TGAAGAATAACTTATTTTGCACCCT 57.225 32.000 0.00 0.00 39.13 4.34
3360 3439 7.601856 TGAAGAATAACTTATTTTGCACCCTG 58.398 34.615 0.00 0.00 39.13 4.45
3361 3440 7.450014 TGAAGAATAACTTATTTTGCACCCTGA 59.550 33.333 0.00 0.00 39.13 3.86
3362 3441 7.396540 AGAATAACTTATTTTGCACCCTGAG 57.603 36.000 0.00 0.00 0.00 3.35
3363 3442 6.948309 AGAATAACTTATTTTGCACCCTGAGT 59.052 34.615 0.00 0.00 0.00 3.41
3379 3458 7.741554 ACCCTGAGTGAGAAATAGTTATTCT 57.258 36.000 0.00 0.00 39.76 2.40
3380 3459 8.152023 ACCCTGAGTGAGAAATAGTTATTCTT 57.848 34.615 0.00 0.00 37.26 2.52
3381 3460 8.261522 ACCCTGAGTGAGAAATAGTTATTCTTC 58.738 37.037 0.00 0.00 37.26 2.87
3382 3461 8.260818 CCCTGAGTGAGAAATAGTTATTCTTCA 58.739 37.037 0.00 0.00 37.26 3.02
3383 3462 9.092876 CCTGAGTGAGAAATAGTTATTCTTCAC 57.907 37.037 14.52 14.52 37.26 3.18
3384 3463 9.092876 CTGAGTGAGAAATAGTTATTCTTCACC 57.907 37.037 16.69 12.25 38.42 4.02
3385 3464 8.041323 TGAGTGAGAAATAGTTATTCTTCACCC 58.959 37.037 16.69 10.91 38.42 4.61
3386 3465 7.339482 AGTGAGAAATAGTTATTCTTCACCCC 58.661 38.462 16.69 3.25 38.42 4.95
3387 3466 6.542735 GTGAGAAATAGTTATTCTTCACCCCC 59.457 42.308 12.81 0.00 37.26 5.40
3388 3467 6.447084 TGAGAAATAGTTATTCTTCACCCCCT 59.553 38.462 0.00 0.00 37.26 4.79
3389 3468 6.901300 AGAAATAGTTATTCTTCACCCCCTC 58.099 40.000 0.00 0.00 33.41 4.30
3390 3469 6.678857 AGAAATAGTTATTCTTCACCCCCTCT 59.321 38.462 0.00 0.00 33.41 3.69
3391 3470 7.849904 AGAAATAGTTATTCTTCACCCCCTCTA 59.150 37.037 0.00 0.00 33.41 2.43
3392 3471 8.582891 AAATAGTTATTCTTCACCCCCTCTAT 57.417 34.615 0.00 0.00 0.00 1.98
3393 3472 8.582891 AATAGTTATTCTTCACCCCCTCTATT 57.417 34.615 0.00 0.00 0.00 1.73
3394 3473 6.910259 AGTTATTCTTCACCCCCTCTATTT 57.090 37.500 0.00 0.00 0.00 1.40
3395 3474 7.285340 AGTTATTCTTCACCCCCTCTATTTT 57.715 36.000 0.00 0.00 0.00 1.82
3396 3475 8.401955 AGTTATTCTTCACCCCCTCTATTTTA 57.598 34.615 0.00 0.00 0.00 1.52
3397 3476 8.272889 AGTTATTCTTCACCCCCTCTATTTTAC 58.727 37.037 0.00 0.00 0.00 2.01
3398 3477 5.446260 TTCTTCACCCCCTCTATTTTACC 57.554 43.478 0.00 0.00 0.00 2.85
3399 3478 4.440808 TCTTCACCCCCTCTATTTTACCA 58.559 43.478 0.00 0.00 0.00 3.25
3400 3479 5.043762 TCTTCACCCCCTCTATTTTACCAT 58.956 41.667 0.00 0.00 0.00 3.55
3401 3480 5.132144 TCTTCACCCCCTCTATTTTACCATC 59.868 44.000 0.00 0.00 0.00 3.51
3402 3481 4.376223 TCACCCCCTCTATTTTACCATCA 58.624 43.478 0.00 0.00 0.00 3.07
3403 3482 4.791334 TCACCCCCTCTATTTTACCATCAA 59.209 41.667 0.00 0.00 0.00 2.57
3404 3483 5.435041 TCACCCCCTCTATTTTACCATCAAT 59.565 40.000 0.00 0.00 0.00 2.57
3405 3484 5.536161 CACCCCCTCTATTTTACCATCAATG 59.464 44.000 0.00 0.00 0.00 2.82
3406 3485 4.524328 CCCCCTCTATTTTACCATCAATGC 59.476 45.833 0.00 0.00 0.00 3.56
3407 3486 5.139727 CCCCTCTATTTTACCATCAATGCA 58.860 41.667 0.00 0.00 0.00 3.96
3408 3487 5.010012 CCCCTCTATTTTACCATCAATGCAC 59.990 44.000 0.00 0.00 0.00 4.57
3409 3488 5.010012 CCCTCTATTTTACCATCAATGCACC 59.990 44.000 0.00 0.00 0.00 5.01
3410 3489 5.277974 CCTCTATTTTACCATCAATGCACCG 60.278 44.000 0.00 0.00 0.00 4.94
3411 3490 5.189928 TCTATTTTACCATCAATGCACCGT 58.810 37.500 0.00 0.00 0.00 4.83
3412 3491 6.350103 TCTATTTTACCATCAATGCACCGTA 58.650 36.000 0.00 0.00 0.00 4.02
3413 3492 5.906113 ATTTTACCATCAATGCACCGTAA 57.094 34.783 0.00 0.00 0.00 3.18
3414 3493 5.906113 TTTTACCATCAATGCACCGTAAT 57.094 34.783 0.00 0.00 0.00 1.89
3415 3494 5.906113 TTTACCATCAATGCACCGTAATT 57.094 34.783 0.00 0.00 0.00 1.40
3416 3495 5.906113 TTACCATCAATGCACCGTAATTT 57.094 34.783 0.00 0.00 0.00 1.82
3417 3496 4.799564 ACCATCAATGCACCGTAATTTT 57.200 36.364 0.00 0.00 0.00 1.82
3418 3497 5.906113 ACCATCAATGCACCGTAATTTTA 57.094 34.783 0.00 0.00 0.00 1.52
3419 3498 5.646606 ACCATCAATGCACCGTAATTTTAC 58.353 37.500 0.00 0.00 0.00 2.01
3449 3528 9.630098 TCGTAAGTTTTATCTTATTTCTGACGT 57.370 29.630 0.00 0.00 39.48 4.34
3460 3539 8.530269 TCTTATTTCTGACGTAAAAAGAGACC 57.470 34.615 0.00 0.00 0.00 3.85
3461 3540 8.145767 TCTTATTTCTGACGTAAAAAGAGACCA 58.854 33.333 0.00 0.00 0.00 4.02
3462 3541 8.842358 TTATTTCTGACGTAAAAAGAGACCAT 57.158 30.769 0.00 0.00 0.00 3.55
3463 3542 9.932207 TTATTTCTGACGTAAAAAGAGACCATA 57.068 29.630 0.00 0.00 0.00 2.74
3464 3543 8.842358 ATTTCTGACGTAAAAAGAGACCATAA 57.158 30.769 0.00 0.00 0.00 1.90
3465 3544 7.884816 TTCTGACGTAAAAAGAGACCATAAG 57.115 36.000 0.00 0.00 0.00 1.73
3466 3545 7.223260 TCTGACGTAAAAAGAGACCATAAGA 57.777 36.000 0.00 0.00 0.00 2.10
3467 3546 7.663827 TCTGACGTAAAAAGAGACCATAAGAA 58.336 34.615 0.00 0.00 0.00 2.52
3468 3547 8.145767 TCTGACGTAAAAAGAGACCATAAGAAA 58.854 33.333 0.00 0.00 0.00 2.52
3469 3548 8.665643 TGACGTAAAAAGAGACCATAAGAAAA 57.334 30.769 0.00 0.00 0.00 2.29
3470 3549 9.280174 TGACGTAAAAAGAGACCATAAGAAAAT 57.720 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.565509 TGATTAGGTGTTGGATAAGCACAA 58.434 37.500 0.00 0.00 35.05 3.33
74 76 1.748493 TCACTTGAAGTTGGTGGTTGC 59.252 47.619 0.00 0.00 0.00 4.17
87 89 2.293318 ATGCCCCTCGCTCACTTGA 61.293 57.895 0.00 0.00 38.78 3.02
123 133 1.355720 CATCCCCTCCTTGGAGTTGTT 59.644 52.381 14.77 0.00 38.35 2.83
217 228 2.706890 TGCCCAATTCTAGGAAACGTC 58.293 47.619 0.00 0.00 0.00 4.34
221 235 3.161866 GGTGTTGCCCAATTCTAGGAAA 58.838 45.455 0.00 0.00 0.00 3.13
265 279 1.003718 GGCTAAGAGTTGCGGTGGT 60.004 57.895 0.00 0.00 0.00 4.16
312 336 1.352156 CTCTTTGCCGTGTAGCCGAC 61.352 60.000 0.00 0.00 0.00 4.79
639 714 4.570369 GTGTTCTTTGGGTTTGTCAAATGG 59.430 41.667 0.40 0.00 34.19 3.16
658 733 6.870971 TTCTGTAAAAAGCGATAAGGTGTT 57.129 33.333 0.00 0.00 0.00 3.32
840 917 5.516996 TGTAATCGAGTCGGAATACATGTC 58.483 41.667 13.54 0.00 0.00 3.06
841 918 5.509716 TGTAATCGAGTCGGAATACATGT 57.490 39.130 13.54 2.69 0.00 3.21
842 919 6.254804 TGTTTGTAATCGAGTCGGAATACATG 59.745 38.462 13.54 0.00 0.00 3.21
843 920 6.255020 GTGTTTGTAATCGAGTCGGAATACAT 59.745 38.462 13.54 0.00 0.00 2.29
844 921 5.574055 GTGTTTGTAATCGAGTCGGAATACA 59.426 40.000 13.54 15.46 0.00 2.29
997 1074 1.963338 GGAGGCGCACCATCATAGC 60.963 63.158 10.83 0.00 39.06 2.97
998 1075 1.665916 CGGAGGCGCACCATCATAG 60.666 63.158 19.78 2.23 39.06 2.23
999 1076 2.087462 CTCGGAGGCGCACCATCATA 62.087 60.000 19.78 2.53 39.06 2.15
1014 1091 2.011349 CGTCGAATCGGATGCTCGG 61.011 63.158 1.76 0.00 33.44 4.63
1711 1788 2.598098 TACGGGATCTCGAGGCGACA 62.598 60.000 24.50 0.00 0.00 4.35
1821 1898 0.329261 TCTTTGGGTGCATCTCCAGG 59.671 55.000 0.00 0.58 34.17 4.45
1831 1908 4.397348 CGGGAGGTTCTTTGGGTG 57.603 61.111 0.00 0.00 0.00 4.61
1948 2025 2.807045 GTCCAGCAGCTCGACGTG 60.807 66.667 4.24 0.00 0.00 4.49
2292 2369 0.179127 TCTTGAGATCCAGCGCGAAG 60.179 55.000 12.10 0.29 0.00 3.79
2334 2411 4.704833 TTGCAGCGCAGGACCTCC 62.705 66.667 11.47 0.00 40.61 4.30
2378 2455 1.355720 GGCAAGCCCTCCACCATATAT 59.644 52.381 0.00 0.00 0.00 0.86
2379 2456 0.771127 GGCAAGCCCTCCACCATATA 59.229 55.000 0.00 0.00 0.00 0.86
2380 2457 1.538666 GGCAAGCCCTCCACCATAT 59.461 57.895 0.00 0.00 0.00 1.78
2436 2513 3.367087 CCCGTCTAGTATTATCGCTTGGG 60.367 52.174 0.00 0.00 0.00 4.12
2455 2532 1.950909 GATGTGTCCTAGAGAGACCCG 59.049 57.143 0.00 0.00 37.98 5.28
2456 2533 3.306472 AGATGTGTCCTAGAGAGACCC 57.694 52.381 0.00 0.00 37.98 4.46
2457 2534 5.298989 TCTAGATGTGTCCTAGAGAGACC 57.701 47.826 0.00 0.00 37.98 3.85
2458 2535 6.801539 CATCTAGATGTGTCCTAGAGAGAC 57.198 45.833 22.42 0.00 43.87 3.36
2471 2548 7.594351 ACATGAGTATGTCACATCTAGATGT 57.406 36.000 28.95 28.95 44.00 3.06
2485 2562 6.809869 TCACCTTAGATGTGACATGAGTATG 58.190 40.000 1.23 0.14 37.80 2.39
2486 2563 7.440198 CATCACCTTAGATGTGACATGAGTAT 58.560 38.462 1.23 0.00 44.85 2.12
2487 2564 6.809869 CATCACCTTAGATGTGACATGAGTA 58.190 40.000 1.23 0.00 44.85 2.59
2488 2565 5.668471 CATCACCTTAGATGTGACATGAGT 58.332 41.667 1.23 0.00 44.85 3.41
2506 2583 3.885484 CACAAACAGAGTGGACATCAC 57.115 47.619 0.00 0.00 46.39 3.06
2559 2636 5.618640 GCTCCTACAAATATAATGCAGCAGC 60.619 44.000 0.00 0.00 42.57 5.25
2560 2637 5.704515 AGCTCCTACAAATATAATGCAGCAG 59.295 40.000 0.00 0.00 0.00 4.24
2561 2638 5.624159 AGCTCCTACAAATATAATGCAGCA 58.376 37.500 0.00 0.00 0.00 4.41
2562 2639 6.566197 AAGCTCCTACAAATATAATGCAGC 57.434 37.500 0.00 0.00 0.00 5.25
2572 2649 9.289782 GGATATCACATTTAAGCTCCTACAAAT 57.710 33.333 4.83 0.00 0.00 2.32
2573 2650 8.494433 AGGATATCACATTTAAGCTCCTACAAA 58.506 33.333 4.83 0.00 30.26 2.83
2574 2651 8.034313 AGGATATCACATTTAAGCTCCTACAA 57.966 34.615 4.83 0.00 30.26 2.41
2575 2652 7.618019 AGGATATCACATTTAAGCTCCTACA 57.382 36.000 4.83 0.00 30.26 2.74
2576 2653 9.998106 TTAAGGATATCACATTTAAGCTCCTAC 57.002 33.333 4.83 0.00 31.77 3.18
2578 2655 9.920946 TTTTAAGGATATCACATTTAAGCTCCT 57.079 29.630 4.83 0.00 33.37 3.69
2608 2685 8.470805 CCAGTGAGTCTACATTTACTGTTAGAT 58.529 37.037 0.00 0.00 39.39 1.98
2609 2686 7.577046 GCCAGTGAGTCTACATTTACTGTTAGA 60.577 40.741 0.00 0.00 39.39 2.10
2610 2687 6.531948 GCCAGTGAGTCTACATTTACTGTTAG 59.468 42.308 0.00 0.00 39.39 2.34
2611 2688 6.014925 TGCCAGTGAGTCTACATTTACTGTTA 60.015 38.462 0.00 0.00 39.39 2.41
2612 2689 5.221641 TGCCAGTGAGTCTACATTTACTGTT 60.222 40.000 0.00 0.00 39.39 3.16
2613 2690 4.283467 TGCCAGTGAGTCTACATTTACTGT 59.717 41.667 0.00 0.00 42.13 3.55
2614 2691 4.820897 TGCCAGTGAGTCTACATTTACTG 58.179 43.478 0.00 0.00 36.27 2.74
2615 2692 5.238583 GTTGCCAGTGAGTCTACATTTACT 58.761 41.667 0.00 0.00 0.00 2.24
2616 2693 4.091509 CGTTGCCAGTGAGTCTACATTTAC 59.908 45.833 0.00 0.00 0.00 2.01
2617 2694 4.021807 TCGTTGCCAGTGAGTCTACATTTA 60.022 41.667 0.00 0.00 0.00 1.40
2618 2695 3.067106 CGTTGCCAGTGAGTCTACATTT 58.933 45.455 0.00 0.00 0.00 2.32
2619 2696 2.299013 TCGTTGCCAGTGAGTCTACATT 59.701 45.455 0.00 0.00 0.00 2.71
2620 2697 1.893137 TCGTTGCCAGTGAGTCTACAT 59.107 47.619 0.00 0.00 0.00 2.29
2621 2698 1.324383 TCGTTGCCAGTGAGTCTACA 58.676 50.000 0.00 0.00 0.00 2.74
2622 2699 2.059541 GTTCGTTGCCAGTGAGTCTAC 58.940 52.381 0.00 0.00 0.00 2.59
2623 2700 1.335597 CGTTCGTTGCCAGTGAGTCTA 60.336 52.381 0.00 0.00 0.00 2.59
2624 2701 0.597637 CGTTCGTTGCCAGTGAGTCT 60.598 55.000 0.00 0.00 0.00 3.24
2625 2702 0.596600 TCGTTCGTTGCCAGTGAGTC 60.597 55.000 0.00 0.00 0.00 3.36
2626 2703 0.874607 GTCGTTCGTTGCCAGTGAGT 60.875 55.000 0.00 0.00 0.00 3.41
2627 2704 1.557443 GGTCGTTCGTTGCCAGTGAG 61.557 60.000 0.00 0.00 0.00 3.51
2649 2726 1.350193 CGGACTGATGACCGTCAAAG 58.650 55.000 5.07 8.93 44.19 2.77
2714 2793 5.010012 ACGCAAGATTTTTCTGAGGATTTGT 59.990 36.000 0.00 0.00 43.62 2.83
2726 2805 5.181690 TGCTAGAAACACGCAAGATTTTT 57.818 34.783 0.00 0.00 43.62 1.94
2768 2847 2.554806 GGGAAGCCCGAAATTTTACG 57.445 50.000 0.00 0.00 32.13 3.18
2835 2914 7.065443 GTGTGGGATATGGTCTTAGTTACAAAC 59.935 40.741 0.00 0.00 0.00 2.93
2836 2915 7.107542 GTGTGGGATATGGTCTTAGTTACAAA 58.892 38.462 0.00 0.00 0.00 2.83
2837 2916 6.213802 TGTGTGGGATATGGTCTTAGTTACAA 59.786 38.462 0.00 0.00 0.00 2.41
2838 2917 5.722441 TGTGTGGGATATGGTCTTAGTTACA 59.278 40.000 0.00 0.00 0.00 2.41
2839 2918 6.229936 TGTGTGGGATATGGTCTTAGTTAC 57.770 41.667 0.00 0.00 0.00 2.50
2840 2919 6.613679 TCATGTGTGGGATATGGTCTTAGTTA 59.386 38.462 0.00 0.00 0.00 2.24
2841 2920 5.428457 TCATGTGTGGGATATGGTCTTAGTT 59.572 40.000 0.00 0.00 0.00 2.24
2842 2921 4.968719 TCATGTGTGGGATATGGTCTTAGT 59.031 41.667 0.00 0.00 0.00 2.24
2900 2979 2.488153 ACAGAGCTTGCGTAAAAATCCC 59.512 45.455 0.00 0.00 0.00 3.85
2903 2982 3.315191 ACACACAGAGCTTGCGTAAAAAT 59.685 39.130 0.00 0.00 0.00 1.82
2904 2983 2.680841 ACACACAGAGCTTGCGTAAAAA 59.319 40.909 0.00 0.00 0.00 1.94
2909 2988 0.104120 TACACACACAGAGCTTGCGT 59.896 50.000 0.00 0.00 0.00 5.24
2910 2989 1.432514 ATACACACACAGAGCTTGCG 58.567 50.000 0.00 0.00 0.00 4.85
2911 2990 9.639601 TTATATATATACACACACAGAGCTTGC 57.360 33.333 1.73 0.00 0.00 4.01
2913 2992 9.862371 GCTTATATATATACACACACAGAGCTT 57.138 33.333 1.73 0.00 0.00 3.74
2914 2993 9.025041 TGCTTATATATATACACACACAGAGCT 57.975 33.333 14.06 0.00 0.00 4.09
2915 2994 9.639601 TTGCTTATATATATACACACACAGAGC 57.360 33.333 1.73 6.23 0.00 4.09
2931 3010 8.770828 GCGAAGTTTCATAGGTTTGCTTATATA 58.229 33.333 0.00 0.00 0.00 0.86
2932 3011 7.499232 AGCGAAGTTTCATAGGTTTGCTTATAT 59.501 33.333 0.00 0.00 36.43 0.86
2933 3012 6.821665 AGCGAAGTTTCATAGGTTTGCTTATA 59.178 34.615 0.00 0.00 36.43 0.98
2934 3013 5.648092 AGCGAAGTTTCATAGGTTTGCTTAT 59.352 36.000 0.00 0.00 36.43 1.73
2935 3014 5.001232 AGCGAAGTTTCATAGGTTTGCTTA 58.999 37.500 0.00 0.00 36.43 3.09
2936 3015 3.821033 AGCGAAGTTTCATAGGTTTGCTT 59.179 39.130 0.00 0.00 36.43 3.91
2937 3016 3.412386 AGCGAAGTTTCATAGGTTTGCT 58.588 40.909 0.00 0.00 35.25 3.91
2938 3017 3.725010 CGAGCGAAGTTTCATAGGTTTGC 60.725 47.826 0.00 0.00 0.00 3.68
2939 3018 3.181520 CCGAGCGAAGTTTCATAGGTTTG 60.182 47.826 0.00 0.00 0.00 2.93
2940 3019 3.000727 CCGAGCGAAGTTTCATAGGTTT 58.999 45.455 0.00 0.00 0.00 3.27
2941 3020 2.618053 CCGAGCGAAGTTTCATAGGTT 58.382 47.619 0.00 0.00 0.00 3.50
2942 3021 1.134788 CCCGAGCGAAGTTTCATAGGT 60.135 52.381 0.00 0.00 0.00 3.08
2943 3022 1.571919 CCCGAGCGAAGTTTCATAGG 58.428 55.000 0.00 0.00 0.00 2.57
2944 3023 0.931005 GCCCGAGCGAAGTTTCATAG 59.069 55.000 0.00 0.00 0.00 2.23
2945 3024 3.059603 GCCCGAGCGAAGTTTCATA 57.940 52.632 0.00 0.00 0.00 2.15
2946 3025 3.890674 GCCCGAGCGAAGTTTCAT 58.109 55.556 0.00 0.00 0.00 2.57
2956 3035 0.317479 AGAATACATACCGCCCGAGC 59.683 55.000 0.00 0.00 0.00 5.03
2957 3036 1.887198 AGAGAATACATACCGCCCGAG 59.113 52.381 0.00 0.00 0.00 4.63
2958 3037 1.991121 AGAGAATACATACCGCCCGA 58.009 50.000 0.00 0.00 0.00 5.14
2959 3038 2.223971 ACAAGAGAATACATACCGCCCG 60.224 50.000 0.00 0.00 0.00 6.13
2960 3039 3.470645 ACAAGAGAATACATACCGCCC 57.529 47.619 0.00 0.00 0.00 6.13
2961 3040 4.189231 ACAACAAGAGAATACATACCGCC 58.811 43.478 0.00 0.00 0.00 6.13
2962 3041 8.758633 ATATACAACAAGAGAATACATACCGC 57.241 34.615 0.00 0.00 0.00 5.68
2992 3071 8.035394 CGAATAGCATGACCCTATAATGTTACT 58.965 37.037 0.00 0.00 0.00 2.24
2993 3072 7.817962 ACGAATAGCATGACCCTATAATGTTAC 59.182 37.037 0.00 0.00 0.00 2.50
2994 3073 7.903145 ACGAATAGCATGACCCTATAATGTTA 58.097 34.615 0.00 0.00 0.00 2.41
2995 3074 6.769512 ACGAATAGCATGACCCTATAATGTT 58.230 36.000 0.00 0.00 0.00 2.71
2996 3075 6.014584 TGACGAATAGCATGACCCTATAATGT 60.015 38.462 0.00 0.00 0.00 2.71
2997 3076 6.311445 GTGACGAATAGCATGACCCTATAATG 59.689 42.308 0.00 0.00 0.00 1.90
2998 3077 6.398918 GTGACGAATAGCATGACCCTATAAT 58.601 40.000 0.00 0.00 0.00 1.28
2999 3078 5.279306 GGTGACGAATAGCATGACCCTATAA 60.279 44.000 0.00 0.00 0.00 0.98
3000 3079 4.219944 GGTGACGAATAGCATGACCCTATA 59.780 45.833 0.00 0.00 0.00 1.31
3001 3080 3.006967 GGTGACGAATAGCATGACCCTAT 59.993 47.826 0.00 0.00 0.00 2.57
3002 3081 2.364324 GGTGACGAATAGCATGACCCTA 59.636 50.000 0.00 0.00 0.00 3.53
3003 3082 1.139058 GGTGACGAATAGCATGACCCT 59.861 52.381 0.00 0.00 0.00 4.34
3004 3083 1.583054 GGTGACGAATAGCATGACCC 58.417 55.000 0.00 0.00 0.00 4.46
3005 3084 1.139058 AGGGTGACGAATAGCATGACC 59.861 52.381 0.00 0.00 0.00 4.02
3006 3085 2.205074 CAGGGTGACGAATAGCATGAC 58.795 52.381 0.00 0.00 29.74 3.06
3007 3086 1.138859 CCAGGGTGACGAATAGCATGA 59.861 52.381 0.00 0.00 29.74 3.07
3008 3087 1.586422 CCAGGGTGACGAATAGCATG 58.414 55.000 0.00 0.00 0.00 4.06
3009 3088 0.469917 CCCAGGGTGACGAATAGCAT 59.530 55.000 0.00 0.00 0.00 3.79
3010 3089 0.907704 ACCCAGGGTGACGAATAGCA 60.908 55.000 11.70 0.00 32.98 3.49
3011 3090 1.905512 ACCCAGGGTGACGAATAGC 59.094 57.895 11.70 0.00 32.98 2.97
3018 3097 9.736671 GAATAACTATTCCTCACCCAGGGTGAC 62.737 48.148 34.62 17.53 44.45 3.67
3019 3098 7.827072 GAATAACTATTCCTCACCCAGGGTGA 61.827 46.154 35.32 35.32 45.54 4.02
3020 3099 5.687706 GAATAACTATTCCTCACCCAGGGTG 60.688 48.000 31.06 31.06 43.50 4.61
3021 3100 2.361085 AACTATTCCTCACCCAGGGT 57.639 50.000 4.76 4.76 43.67 4.34
3022 3101 4.660771 AGAATAACTATTCCTCACCCAGGG 59.339 45.833 2.85 2.85 43.67 4.45
3023 3102 5.896073 AGAATAACTATTCCTCACCCAGG 57.104 43.478 5.95 0.00 42.29 4.45
3024 3103 6.889198 TGAAGAATAACTATTCCTCACCCAG 58.111 40.000 6.65 0.00 42.29 4.45
3025 3104 6.884472 TGAAGAATAACTATTCCTCACCCA 57.116 37.500 6.65 0.00 42.29 4.51
3029 3108 5.132144 GGGGGTGAAGAATAACTATTCCTCA 59.868 44.000 6.65 6.65 42.29 3.86
3030 3109 5.369993 AGGGGGTGAAGAATAACTATTCCTC 59.630 44.000 5.95 4.07 42.29 3.71
3031 3110 5.297799 AGGGGGTGAAGAATAACTATTCCT 58.702 41.667 5.95 0.00 42.29 3.36
3032 3111 5.648330 AGGGGGTGAAGAATAACTATTCC 57.352 43.478 5.95 0.00 42.29 3.01
3033 3112 7.347252 AGAAAGGGGGTGAAGAATAACTATTC 58.653 38.462 1.83 1.83 41.78 1.75
3034 3113 7.285340 AGAAAGGGGGTGAAGAATAACTATT 57.715 36.000 0.00 0.00 0.00 1.73
3035 3114 6.910259 AGAAAGGGGGTGAAGAATAACTAT 57.090 37.500 0.00 0.00 0.00 2.12
3036 3115 8.401955 AATAGAAAGGGGGTGAAGAATAACTA 57.598 34.615 0.00 0.00 0.00 2.24
3037 3116 6.910259 ATAGAAAGGGGGTGAAGAATAACT 57.090 37.500 0.00 0.00 0.00 2.24
3038 3117 7.956328 AAATAGAAAGGGGGTGAAGAATAAC 57.044 36.000 0.00 0.00 0.00 1.89
3039 3118 8.174085 TCAAAATAGAAAGGGGGTGAAGAATAA 58.826 33.333 0.00 0.00 0.00 1.40
3040 3119 7.614192 GTCAAAATAGAAAGGGGGTGAAGAATA 59.386 37.037 0.00 0.00 0.00 1.75
3041 3120 6.437477 GTCAAAATAGAAAGGGGGTGAAGAAT 59.563 38.462 0.00 0.00 0.00 2.40
3042 3121 5.773176 GTCAAAATAGAAAGGGGGTGAAGAA 59.227 40.000 0.00 0.00 0.00 2.52
3043 3122 5.321927 GTCAAAATAGAAAGGGGGTGAAGA 58.678 41.667 0.00 0.00 0.00 2.87
3044 3123 4.156008 CGTCAAAATAGAAAGGGGGTGAAG 59.844 45.833 0.00 0.00 0.00 3.02
3045 3124 4.076394 CGTCAAAATAGAAAGGGGGTGAA 58.924 43.478 0.00 0.00 0.00 3.18
3046 3125 3.073356 ACGTCAAAATAGAAAGGGGGTGA 59.927 43.478 0.00 0.00 0.00 4.02
3047 3126 3.418047 ACGTCAAAATAGAAAGGGGGTG 58.582 45.455 0.00 0.00 0.00 4.61
3048 3127 3.073356 TGACGTCAAAATAGAAAGGGGGT 59.927 43.478 17.62 0.00 0.00 4.95
3049 3128 3.681593 TGACGTCAAAATAGAAAGGGGG 58.318 45.455 17.62 0.00 0.00 5.40
3050 3129 5.897377 ATTGACGTCAAAATAGAAAGGGG 57.103 39.130 32.69 0.00 39.55 4.79
3051 3130 7.241376 GTGTATTGACGTCAAAATAGAAAGGG 58.759 38.462 32.69 0.00 39.55 3.95
3052 3131 7.241376 GGTGTATTGACGTCAAAATAGAAAGG 58.759 38.462 32.69 0.00 39.55 3.11
3053 3132 6.953743 CGGTGTATTGACGTCAAAATAGAAAG 59.046 38.462 32.69 16.66 39.55 2.62
3054 3133 6.424509 ACGGTGTATTGACGTCAAAATAGAAA 59.575 34.615 32.69 9.96 39.55 2.52
3055 3134 5.927689 ACGGTGTATTGACGTCAAAATAGAA 59.072 36.000 32.69 10.75 39.55 2.10
3056 3135 5.472148 ACGGTGTATTGACGTCAAAATAGA 58.528 37.500 32.69 18.04 39.55 1.98
3057 3136 5.773239 ACGGTGTATTGACGTCAAAATAG 57.227 39.130 32.69 22.42 39.55 1.73
3058 3137 7.830940 AATACGGTGTATTGACGTCAAAATA 57.169 32.000 32.69 19.59 41.53 1.40
3059 3138 6.730960 AATACGGTGTATTGACGTCAAAAT 57.269 33.333 32.69 20.63 41.53 1.82
3060 3139 6.542574 AAATACGGTGTATTGACGTCAAAA 57.457 33.333 32.69 19.17 41.53 2.44
3061 3140 6.542574 AAAATACGGTGTATTGACGTCAAA 57.457 33.333 32.69 19.43 41.53 2.69
3062 3141 6.542574 AAAAATACGGTGTATTGACGTCAA 57.457 33.333 31.41 31.41 41.53 3.18
3063 3142 6.310956 CCTAAAAATACGGTGTATTGACGTCA 59.689 38.462 15.76 15.76 41.53 4.35
3064 3143 6.311200 ACCTAAAAATACGGTGTATTGACGTC 59.689 38.462 9.11 9.11 41.53 4.34
3065 3144 6.165577 ACCTAAAAATACGGTGTATTGACGT 58.834 36.000 3.17 0.00 43.88 4.34
3066 3145 6.651755 ACCTAAAAATACGGTGTATTGACG 57.348 37.500 3.17 0.00 0.00 4.35
3067 3146 7.689400 CGAAACCTAAAAATACGGTGTATTGAC 59.311 37.037 3.17 0.00 0.00 3.18
3068 3147 7.387397 ACGAAACCTAAAAATACGGTGTATTGA 59.613 33.333 3.17 0.00 0.00 2.57
3069 3148 7.520686 ACGAAACCTAAAAATACGGTGTATTG 58.479 34.615 3.17 0.00 0.00 1.90
3070 3149 7.671495 ACGAAACCTAAAAATACGGTGTATT 57.329 32.000 0.00 0.00 0.00 1.89
3071 3150 8.770438 TTACGAAACCTAAAAATACGGTGTAT 57.230 30.769 0.00 0.00 0.00 2.29
3072 3151 8.594881 TTTACGAAACCTAAAAATACGGTGTA 57.405 30.769 0.00 0.00 0.00 2.90
3073 3152 7.489574 TTTACGAAACCTAAAAATACGGTGT 57.510 32.000 0.00 0.00 0.00 4.16
3074 3153 8.953507 AATTTACGAAACCTAAAAATACGGTG 57.046 30.769 0.00 0.00 0.00 4.94
3075 3154 9.964303 AAAATTTACGAAACCTAAAAATACGGT 57.036 25.926 0.00 0.00 0.00 4.83
3125 3204 9.722056 ACGACGAGTATATATTTTCTTACGTTT 57.278 29.630 0.00 0.00 0.00 3.60
3160 3239 9.517609 ACGTTTGCAACTTTATGTAACATAAAA 57.482 25.926 0.00 0.00 0.00 1.52
3164 3243 9.517609 TTTTACGTTTGCAACTTTATGTAACAT 57.482 25.926 11.43 0.00 0.00 2.71
3165 3244 8.906636 TTTTACGTTTGCAACTTTATGTAACA 57.093 26.923 11.43 5.00 0.00 2.41
3166 3245 9.609223 GTTTTTACGTTTGCAACTTTATGTAAC 57.391 29.630 11.43 2.79 0.00 2.50
3167 3246 9.350357 TGTTTTTACGTTTGCAACTTTATGTAA 57.650 25.926 0.00 4.07 0.00 2.41
3168 3247 8.906636 TGTTTTTACGTTTGCAACTTTATGTA 57.093 26.923 0.00 0.00 0.00 2.29
3169 3248 7.813852 TGTTTTTACGTTTGCAACTTTATGT 57.186 28.000 0.00 0.00 0.00 2.29
3170 3249 9.772282 GTATGTTTTTACGTTTGCAACTTTATG 57.228 29.630 0.00 0.00 0.00 1.90
3171 3250 9.517609 TGTATGTTTTTACGTTTGCAACTTTAT 57.482 25.926 0.00 0.00 0.00 1.40
3172 3251 8.906636 TGTATGTTTTTACGTTTGCAACTTTA 57.093 26.923 0.00 0.00 0.00 1.85
3173 3252 7.813852 TGTATGTTTTTACGTTTGCAACTTT 57.186 28.000 0.00 0.00 0.00 2.66
3174 3253 7.995463 ATGTATGTTTTTACGTTTGCAACTT 57.005 28.000 0.00 0.00 0.00 2.66
3175 3254 9.517609 TTTATGTATGTTTTTACGTTTGCAACT 57.482 25.926 0.00 0.00 0.00 3.16
3179 3258 9.245284 GCATTTTATGTATGTTTTTACGTTTGC 57.755 29.630 0.00 0.00 0.00 3.68
3180 3259 9.442019 CGCATTTTATGTATGTTTTTACGTTTG 57.558 29.630 0.00 0.00 0.00 2.93
3181 3260 9.395707 TCGCATTTTATGTATGTTTTTACGTTT 57.604 25.926 0.00 0.00 0.00 3.60
3182 3261 8.951954 TCGCATTTTATGTATGTTTTTACGTT 57.048 26.923 0.00 0.00 0.00 3.99
3190 3269 9.897744 CCAGAAATATCGCATTTTATGTATGTT 57.102 29.630 0.00 0.00 0.00 2.71
3191 3270 9.066892 ACCAGAAATATCGCATTTTATGTATGT 57.933 29.630 0.00 0.00 0.00 2.29
3192 3271 9.546909 GACCAGAAATATCGCATTTTATGTATG 57.453 33.333 0.00 0.00 0.00 2.39
3193 3272 9.507329 AGACCAGAAATATCGCATTTTATGTAT 57.493 29.630 0.00 0.00 0.00 2.29
3194 3273 8.902540 AGACCAGAAATATCGCATTTTATGTA 57.097 30.769 0.00 0.00 0.00 2.29
3195 3274 7.807977 AGACCAGAAATATCGCATTTTATGT 57.192 32.000 0.00 0.00 0.00 2.29
3200 3279 8.784043 GGTTATAAGACCAGAAATATCGCATTT 58.216 33.333 0.00 0.00 39.57 2.32
3201 3280 8.157476 AGGTTATAAGACCAGAAATATCGCATT 58.843 33.333 0.00 0.00 42.35 3.56
3202 3281 7.680730 AGGTTATAAGACCAGAAATATCGCAT 58.319 34.615 0.00 0.00 42.35 4.73
3203 3282 7.062749 AGGTTATAAGACCAGAAATATCGCA 57.937 36.000 0.00 0.00 42.35 5.10
3204 3283 9.654663 AATAGGTTATAAGACCAGAAATATCGC 57.345 33.333 0.00 0.00 42.35 4.58
3256 3335 9.817809 AGTTACATTCATATTGATTCACTACGT 57.182 29.630 0.00 0.00 0.00 3.57
3307 3386 9.952188 CTGAGTAATCTTACGATCACTTCATAA 57.048 33.333 0.00 0.00 38.65 1.90
3308 3387 9.338622 TCTGAGTAATCTTACGATCACTTCATA 57.661 33.333 0.00 0.00 38.65 2.15
3309 3388 8.226819 TCTGAGTAATCTTACGATCACTTCAT 57.773 34.615 0.00 0.00 38.65 2.57
3310 3389 7.625828 TCTGAGTAATCTTACGATCACTTCA 57.374 36.000 0.00 0.00 38.65 3.02
3311 3390 8.346300 TCATCTGAGTAATCTTACGATCACTTC 58.654 37.037 0.00 0.00 38.65 3.01
3312 3391 8.226819 TCATCTGAGTAATCTTACGATCACTT 57.773 34.615 0.00 0.00 38.65 3.16
3313 3392 7.809546 TCATCTGAGTAATCTTACGATCACT 57.190 36.000 0.00 0.00 38.65 3.41
3314 3393 8.346300 TCTTCATCTGAGTAATCTTACGATCAC 58.654 37.037 0.00 0.00 38.65 3.06
3315 3394 8.451908 TCTTCATCTGAGTAATCTTACGATCA 57.548 34.615 0.00 0.00 38.65 2.92
3316 3395 9.906660 ATTCTTCATCTGAGTAATCTTACGATC 57.093 33.333 0.00 0.00 38.65 3.69
3331 3410 9.294030 GGTGCAAAATAAGTTATTCTTCATCTG 57.706 33.333 8.56 0.88 37.56 2.90
3332 3411 8.470002 GGGTGCAAAATAAGTTATTCTTCATCT 58.530 33.333 8.56 0.00 37.56 2.90
3333 3412 8.470002 AGGGTGCAAAATAAGTTATTCTTCATC 58.530 33.333 8.56 7.00 37.56 2.92
3334 3413 8.253113 CAGGGTGCAAAATAAGTTATTCTTCAT 58.747 33.333 8.56 0.00 37.56 2.57
3335 3414 7.450014 TCAGGGTGCAAAATAAGTTATTCTTCA 59.550 33.333 8.56 4.55 37.56 3.02
3336 3415 7.826690 TCAGGGTGCAAAATAAGTTATTCTTC 58.173 34.615 8.56 2.26 37.56 2.87
3337 3416 7.451566 ACTCAGGGTGCAAAATAAGTTATTCTT 59.548 33.333 8.56 3.60 39.89 2.52
3338 3417 6.948309 ACTCAGGGTGCAAAATAAGTTATTCT 59.052 34.615 8.56 0.00 0.00 2.40
3339 3418 7.029563 CACTCAGGGTGCAAAATAAGTTATTC 58.970 38.462 8.56 0.00 39.22 1.75
3340 3419 6.719370 TCACTCAGGGTGCAAAATAAGTTATT 59.281 34.615 2.10 2.10 44.98 1.40
3341 3420 6.245408 TCACTCAGGGTGCAAAATAAGTTAT 58.755 36.000 0.00 0.00 44.98 1.89
3342 3421 5.626142 TCACTCAGGGTGCAAAATAAGTTA 58.374 37.500 0.00 0.00 44.98 2.24
3343 3422 4.469657 TCACTCAGGGTGCAAAATAAGTT 58.530 39.130 0.00 0.00 44.98 2.66
3344 3423 4.074970 CTCACTCAGGGTGCAAAATAAGT 58.925 43.478 0.00 0.00 44.98 2.24
3345 3424 4.326826 TCTCACTCAGGGTGCAAAATAAG 58.673 43.478 0.00 0.00 44.98 1.73
3346 3425 4.365514 TCTCACTCAGGGTGCAAAATAA 57.634 40.909 0.00 0.00 44.98 1.40
3347 3426 4.365514 TTCTCACTCAGGGTGCAAAATA 57.634 40.909 0.00 0.00 44.98 1.40
3348 3427 2.957402 TCTCACTCAGGGTGCAAAAT 57.043 45.000 0.00 0.00 44.98 1.82
3349 3428 2.727123 TTCTCACTCAGGGTGCAAAA 57.273 45.000 0.00 0.00 44.98 2.44
3350 3429 2.727123 TTTCTCACTCAGGGTGCAAA 57.273 45.000 0.00 0.00 44.98 3.68
3351 3430 2.957402 ATTTCTCACTCAGGGTGCAA 57.043 45.000 0.00 0.00 44.98 4.08
3352 3431 2.906389 ACTATTTCTCACTCAGGGTGCA 59.094 45.455 0.00 0.00 44.98 4.57
3353 3432 3.618690 ACTATTTCTCACTCAGGGTGC 57.381 47.619 0.00 0.00 44.98 5.01
3354 3433 7.560368 AGAATAACTATTTCTCACTCAGGGTG 58.440 38.462 0.00 0.00 46.60 4.61
3355 3434 7.741554 AGAATAACTATTTCTCACTCAGGGT 57.258 36.000 0.00 0.00 0.00 4.34
3356 3435 8.260818 TGAAGAATAACTATTTCTCACTCAGGG 58.739 37.037 0.00 0.00 0.00 4.45
3357 3436 9.092876 GTGAAGAATAACTATTTCTCACTCAGG 57.907 37.037 12.88 0.00 36.13 3.86
3358 3437 9.092876 GGTGAAGAATAACTATTTCTCACTCAG 57.907 37.037 16.46 0.00 37.52 3.35
3359 3438 8.041323 GGGTGAAGAATAACTATTTCTCACTCA 58.959 37.037 16.46 2.83 37.64 3.41
3360 3439 7.496263 GGGGTGAAGAATAACTATTTCTCACTC 59.504 40.741 16.46 14.43 37.34 3.51
3361 3440 7.339482 GGGGTGAAGAATAACTATTTCTCACT 58.661 38.462 16.46 0.00 37.52 3.41
3362 3441 6.542735 GGGGGTGAAGAATAACTATTTCTCAC 59.457 42.308 12.25 12.25 37.12 3.51
3363 3442 6.447084 AGGGGGTGAAGAATAACTATTTCTCA 59.553 38.462 0.00 0.00 0.00 3.27
3364 3443 6.901300 AGGGGGTGAAGAATAACTATTTCTC 58.099 40.000 0.00 0.00 0.00 2.87
3365 3444 6.678857 AGAGGGGGTGAAGAATAACTATTTCT 59.321 38.462 0.00 0.00 0.00 2.52
3366 3445 6.901300 AGAGGGGGTGAAGAATAACTATTTC 58.099 40.000 0.00 0.00 0.00 2.17
3367 3446 6.910259 AGAGGGGGTGAAGAATAACTATTT 57.090 37.500 0.00 0.00 0.00 1.40
3368 3447 8.582891 AATAGAGGGGGTGAAGAATAACTATT 57.417 34.615 0.00 0.00 0.00 1.73
3369 3448 8.582891 AAATAGAGGGGGTGAAGAATAACTAT 57.417 34.615 0.00 0.00 0.00 2.12
3370 3449 8.401955 AAAATAGAGGGGGTGAAGAATAACTA 57.598 34.615 0.00 0.00 0.00 2.24
3371 3450 6.910259 AAATAGAGGGGGTGAAGAATAACT 57.090 37.500 0.00 0.00 0.00 2.24
3372 3451 7.501559 GGTAAAATAGAGGGGGTGAAGAATAAC 59.498 40.741 0.00 0.00 0.00 1.89
3373 3452 7.184936 TGGTAAAATAGAGGGGGTGAAGAATAA 59.815 37.037 0.00 0.00 0.00 1.40
3374 3453 6.679303 TGGTAAAATAGAGGGGGTGAAGAATA 59.321 38.462 0.00 0.00 0.00 1.75
3375 3454 5.494706 TGGTAAAATAGAGGGGGTGAAGAAT 59.505 40.000 0.00 0.00 0.00 2.40
3376 3455 4.853276 TGGTAAAATAGAGGGGGTGAAGAA 59.147 41.667 0.00 0.00 0.00 2.52
3377 3456 4.440808 TGGTAAAATAGAGGGGGTGAAGA 58.559 43.478 0.00 0.00 0.00 2.87
3378 3457 4.855298 TGGTAAAATAGAGGGGGTGAAG 57.145 45.455 0.00 0.00 0.00 3.02
3379 3458 4.791334 TGATGGTAAAATAGAGGGGGTGAA 59.209 41.667 0.00 0.00 0.00 3.18
3380 3459 4.376223 TGATGGTAAAATAGAGGGGGTGA 58.624 43.478 0.00 0.00 0.00 4.02
3381 3460 4.788925 TGATGGTAAAATAGAGGGGGTG 57.211 45.455 0.00 0.00 0.00 4.61
3382 3461 5.705400 CATTGATGGTAAAATAGAGGGGGT 58.295 41.667 0.00 0.00 0.00 4.95
3383 3462 4.524328 GCATTGATGGTAAAATAGAGGGGG 59.476 45.833 0.00 0.00 0.00 5.40
3384 3463 5.010012 GTGCATTGATGGTAAAATAGAGGGG 59.990 44.000 0.00 0.00 0.00 4.79
3385 3464 5.010012 GGTGCATTGATGGTAAAATAGAGGG 59.990 44.000 0.00 0.00 0.00 4.30
3386 3465 5.277974 CGGTGCATTGATGGTAAAATAGAGG 60.278 44.000 0.00 0.00 0.00 3.69
3387 3466 5.296780 ACGGTGCATTGATGGTAAAATAGAG 59.703 40.000 0.00 0.00 0.00 2.43
3388 3467 5.189928 ACGGTGCATTGATGGTAAAATAGA 58.810 37.500 0.00 0.00 0.00 1.98
3389 3468 5.499139 ACGGTGCATTGATGGTAAAATAG 57.501 39.130 0.00 0.00 0.00 1.73
3390 3469 7.575414 ATTACGGTGCATTGATGGTAAAATA 57.425 32.000 0.00 0.00 0.00 1.40
3391 3470 5.906113 TTACGGTGCATTGATGGTAAAAT 57.094 34.783 0.00 0.00 0.00 1.82
3392 3471 5.906113 ATTACGGTGCATTGATGGTAAAA 57.094 34.783 0.00 0.00 0.00 1.52
3393 3472 5.906113 AATTACGGTGCATTGATGGTAAA 57.094 34.783 0.00 0.00 0.00 2.01
3394 3473 5.906113 AAATTACGGTGCATTGATGGTAA 57.094 34.783 0.00 0.00 0.00 2.85
3395 3474 5.906113 AAAATTACGGTGCATTGATGGTA 57.094 34.783 0.00 0.00 0.00 3.25
3396 3475 4.799564 AAAATTACGGTGCATTGATGGT 57.200 36.364 0.00 0.00 0.00 3.55
3423 3502 9.630098 ACGTCAGAAATAAGATAAAACTTACGA 57.370 29.630 0.00 0.00 35.60 3.43
3434 3513 9.152595 GGTCTCTTTTTACGTCAGAAATAAGAT 57.847 33.333 0.00 0.00 0.00 2.40
3435 3514 8.145767 TGGTCTCTTTTTACGTCAGAAATAAGA 58.854 33.333 0.00 0.00 0.00 2.10
3436 3515 8.306680 TGGTCTCTTTTTACGTCAGAAATAAG 57.693 34.615 0.00 0.00 0.00 1.73
3437 3516 8.842358 ATGGTCTCTTTTTACGTCAGAAATAA 57.158 30.769 0.00 0.00 0.00 1.40
3438 3517 9.932207 TTATGGTCTCTTTTTACGTCAGAAATA 57.068 29.630 0.00 0.00 0.00 1.40
3439 3518 8.842358 TTATGGTCTCTTTTTACGTCAGAAAT 57.158 30.769 0.00 0.00 0.00 2.17
3440 3519 8.145767 TCTTATGGTCTCTTTTTACGTCAGAAA 58.854 33.333 0.00 0.00 0.00 2.52
3441 3520 7.663827 TCTTATGGTCTCTTTTTACGTCAGAA 58.336 34.615 0.00 0.00 0.00 3.02
3442 3521 7.223260 TCTTATGGTCTCTTTTTACGTCAGA 57.777 36.000 0.00 0.00 0.00 3.27
3443 3522 7.884816 TTCTTATGGTCTCTTTTTACGTCAG 57.115 36.000 0.00 0.00 0.00 3.51
3444 3523 8.665643 TTTTCTTATGGTCTCTTTTTACGTCA 57.334 30.769 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.