Multiple sequence alignment - TraesCS7B01G268500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G268500 chr7B 100.000 7883 0 0 1 7883 491401781 491393899 0.000000e+00 14558.0
1 TraesCS7B01G268500 chr7B 96.373 193 6 1 919 1111 385507585 385507394 4.590000e-82 316.0
2 TraesCS7B01G268500 chr7B 79.574 235 42 6 211 443 570105434 570105204 6.330000e-36 163.0
3 TraesCS7B01G268500 chr7B 100.000 28 0 0 72 99 319390008 319389981 1.400000e-02 52.8
4 TraesCS7B01G268500 chr7B 100.000 28 0 0 74 101 482084766 482084793 1.400000e-02 52.8
5 TraesCS7B01G268500 chr7D 98.705 5097 48 8 1110 6199 467999498 467994413 0.000000e+00 9031.0
6 TraesCS7B01G268500 chr7D 97.161 1092 29 2 6793 7883 467993829 467992739 0.000000e+00 1844.0
7 TraesCS7B01G268500 chr7D 96.348 712 24 2 1 710 468000628 467999917 0.000000e+00 1170.0
8 TraesCS7B01G268500 chr7D 98.356 365 3 1 6438 6799 467994425 467994061 8.630000e-179 638.0
9 TraesCS7B01G268500 chr7D 92.857 224 16 0 888 1111 223228726 223228503 7.630000e-85 326.0
10 TraesCS7B01G268500 chr7D 84.138 290 36 6 492 773 165122871 165122584 1.010000e-68 272.0
11 TraesCS7B01G268500 chr7D 93.296 179 8 3 706 881 467999675 467999498 2.180000e-65 261.0
12 TraesCS7B01G268500 chr6B 99.588 243 1 0 6197 6439 463375384 463375142 2.020000e-120 444.0
13 TraesCS7B01G268500 chr6B 86.940 268 31 4 492 756 233671423 233671689 1.660000e-76 298.0
14 TraesCS7B01G268500 chr6B 83.502 297 40 6 492 781 120007165 120006871 1.300000e-67 268.0
15 TraesCS7B01G268500 chr6B 80.000 245 39 8 194 437 607327710 607327475 1.050000e-38 172.0
16 TraesCS7B01G268500 chr6B 100.000 28 0 0 72 99 160815586 160815559 1.400000e-02 52.8
17 TraesCS7B01G268500 chr4A 99.588 243 1 0 6197 6439 306318783 306319025 2.020000e-120 444.0
18 TraesCS7B01G268500 chr4A 95.708 233 10 0 879 1111 378591183 378590951 7.470000e-100 375.0
19 TraesCS7B01G268500 chr4B 99.583 240 1 0 6197 6436 347377597 347377836 9.390000e-119 438.0
20 TraesCS7B01G268500 chr4B 93.886 229 13 1 879 1107 389779978 389780205 2.110000e-90 344.0
21 TraesCS7B01G268500 chr1A 99.177 243 2 0 6197 6439 543930471 543930713 9.390000e-119 438.0
22 TraesCS7B01G268500 chr1A 100.000 28 0 0 74 101 72177619 72177646 1.400000e-02 52.8
23 TraesCS7B01G268500 chr5B 97.531 243 6 0 6197 6439 148373878 148374120 4.400000e-112 416.0
24 TraesCS7B01G268500 chr5B 94.144 222 12 1 879 1100 497369256 497369476 3.520000e-88 337.0
25 TraesCS7B01G268500 chr5B 79.757 247 36 11 194 437 95508491 95508256 4.890000e-37 167.0
26 TraesCS7B01G268500 chr5B 79.412 238 41 8 211 444 672202523 672202290 2.280000e-35 161.0
27 TraesCS7B01G268500 chr3A 97.531 243 6 0 6197 6439 631289928 631289686 4.400000e-112 416.0
28 TraesCS7B01G268500 chr3A 96.137 233 9 0 879 1111 716371582 716371814 1.610000e-101 381.0
29 TraesCS7B01G268500 chr3A 83.562 292 37 8 492 775 730151327 730151615 6.070000e-66 263.0
30 TraesCS7B01G268500 chr3A 77.181 298 50 13 148 437 16436062 16436349 2.940000e-34 158.0
31 TraesCS7B01G268500 chr2D 97.531 243 6 0 6197 6439 370058265 370058023 4.400000e-112 416.0
32 TraesCS7B01G268500 chr2D 97.908 239 5 0 6197 6435 402239197 402239435 1.580000e-111 414.0
33 TraesCS7B01G268500 chr2D 79.736 227 40 6 211 435 91166162 91165940 8.190000e-35 159.0
34 TraesCS7B01G268500 chr4D 97.119 243 7 0 6197 6439 16809382 16809140 2.050000e-110 411.0
35 TraesCS7B01G268500 chr4D 83.681 288 39 8 493 776 82144709 82144992 1.690000e-66 265.0
36 TraesCS7B01G268500 chr3B 96.137 233 9 0 879 1111 661988363 661988595 1.610000e-101 381.0
37 TraesCS7B01G268500 chr3B 84.663 163 20 3 287 447 127308215 127308374 2.940000e-34 158.0
38 TraesCS7B01G268500 chr3D 92.576 229 17 0 879 1107 494392595 494392367 5.900000e-86 329.0
39 TraesCS7B01G268500 chr3D 92.444 225 16 1 883 1107 494395174 494394951 3.550000e-83 320.0
40 TraesCS7B01G268500 chrUn 84.859 284 32 9 492 769 31648643 31648921 7.790000e-70 276.0
41 TraesCS7B01G268500 chr7A 85.660 265 33 5 495 756 663377800 663378062 2.800000e-69 274.0
42 TraesCS7B01G268500 chr2B 85.145 276 29 7 492 757 521340790 521341063 1.010000e-68 272.0
43 TraesCS7B01G268500 chr6D 84.672 274 32 7 492 756 444880360 444880632 1.690000e-66 265.0
44 TraesCS7B01G268500 chr6A 77.447 235 50 3 211 444 162970209 162969977 3.840000e-28 137.0
45 TraesCS7B01G268500 chr2A 100.000 28 0 0 74 101 156035886 156035859 1.400000e-02 52.8
46 TraesCS7B01G268500 chr1D 100.000 28 0 0 74 101 2165305 2165278 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G268500 chr7B 491393899 491401781 7882 True 14558.0 14558 100.0000 1 7883 1 chr7B.!!$R3 7882
1 TraesCS7B01G268500 chr7D 467992739 468000628 7889 True 2588.8 9031 96.7732 1 7883 5 chr7D.!!$R3 7882
2 TraesCS7B01G268500 chr3D 494392367 494395174 2807 True 324.5 329 92.5100 879 1107 2 chr3D.!!$R1 228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.525668 CGCACGTACTCCATCTGTCC 60.526 60.0 0.00 0.0 0.00 4.02 F
1061 2763 0.469331 AGAATCCGACGGCCCAGATA 60.469 55.0 9.66 0.0 0.00 1.98 F
1648 3352 0.173708 CTAAGGACAGGTGAGGCGTC 59.826 60.0 0.00 0.0 0.00 5.19 F
3319 5025 0.034380 CTCGTACAGTCCTCAGGGGA 60.034 60.0 0.00 0.0 42.77 4.81 F
4792 6499 0.033208 TTTGCCCCCATCCAGATGTC 60.033 55.0 6.87 0.0 37.11 3.06 F
6252 7961 0.032952 CCTGGGAAGTCGTCGTGAAA 59.967 55.0 0.00 0.0 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 2809 0.251564 TGGCAAATTCCGTCATGGGT 60.252 50.000 0.00 0.0 38.76 4.51 R
2377 4082 2.435805 TGAACTGTGACTCCAAAGCTCT 59.564 45.455 0.00 0.0 30.52 4.09 R
3440 5146 2.087646 GCACAGAAGTTCTCCCATTCC 58.912 52.381 1.26 0.0 0.00 3.01 R
5218 6925 0.179051 GATCTTCCAGGCAGCTCAGG 60.179 60.000 0.00 0.0 0.00 3.86 R
6348 8057 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.0 36.69 2.94 R
7416 9366 0.729116 AGCATGCACACAAGATACGC 59.271 50.000 21.98 0.0 0.00 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 0.680280 ACCTCGCACGTACTCCATCT 60.680 55.000 0.00 0.00 0.00 2.90
86 87 0.525668 CGCACGTACTCCATCTGTCC 60.526 60.000 0.00 0.00 0.00 4.02
119 120 7.821134 AAGAGCCTCTATGTTATTATGGGAT 57.179 36.000 0.00 0.00 0.00 3.85
182 183 2.634940 TGACAGCTGGGCCTCTAATATC 59.365 50.000 19.93 2.02 0.00 1.63
318 320 3.094339 CGTCGCATACGTATACGATCA 57.906 47.619 28.20 15.47 46.72 2.92
558 561 2.722094 TCCTGGTGCTCGCATATTTTT 58.278 42.857 0.00 0.00 0.00 1.94
559 562 2.682856 TCCTGGTGCTCGCATATTTTTC 59.317 45.455 0.00 0.00 0.00 2.29
562 565 2.423185 TGGTGCTCGCATATTTTTCTGG 59.577 45.455 0.00 0.00 0.00 3.86
584 587 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
612 615 2.814280 TCAGTGGGAAGAGACGTTTC 57.186 50.000 0.00 0.00 0.00 2.78
643 646 1.444212 GGCGCGTACGGTGACTTTA 60.444 57.895 18.39 0.00 40.57 1.85
694 697 5.593909 AGTCTCTCAGAGATGTTCATAGGTG 59.406 44.000 7.89 0.00 40.98 4.00
712 961 1.856597 GTGTAGGGCGTGCGTTAATAG 59.143 52.381 0.00 0.00 0.00 1.73
717 966 1.473080 GGGCGTGCGTTAATAGGGTTA 60.473 52.381 0.00 0.00 0.00 2.85
812 1063 2.795389 GCGACGGTGGATAACGCAC 61.795 63.158 0.00 0.00 46.75 5.34
880 1131 1.228533 TTTTCTTCGTTGCGGGGTAC 58.771 50.000 0.00 0.00 0.00 3.34
882 1133 1.255882 TTCTTCGTTGCGGGGTACTA 58.744 50.000 0.00 0.00 0.00 1.82
894 2596 3.133542 GCGGGGTACTAATCTTTAGGTGT 59.866 47.826 0.00 0.00 0.00 4.16
898 2600 6.586344 GGGGTACTAATCTTTAGGTGTTACC 58.414 44.000 0.00 0.00 38.99 2.85
899 2601 6.156775 GGGGTACTAATCTTTAGGTGTTACCA 59.843 42.308 0.28 0.00 41.95 3.25
901 2603 7.713942 GGGTACTAATCTTTAGGTGTTACCATG 59.286 40.741 0.28 0.00 41.95 3.66
915 2617 7.122650 AGGTGTTACCATGATACAAGATTTTGG 59.877 37.037 0.00 0.00 41.95 3.28
946 2648 1.065126 TCTCAGATCAGACGGCTCTCA 60.065 52.381 0.00 0.00 0.00 3.27
955 2657 1.000283 AGACGGCTCTCAACAACTCTG 60.000 52.381 0.00 0.00 0.00 3.35
1016 2718 1.229625 ACAGGTCCAGCTGATCCCA 60.230 57.895 17.39 0.00 0.00 4.37
1025 2727 2.323599 CAGCTGATCCCACATCTCCTA 58.676 52.381 8.42 0.00 0.00 2.94
1026 2728 2.702478 CAGCTGATCCCACATCTCCTAA 59.298 50.000 8.42 0.00 0.00 2.69
1037 2739 1.120530 ATCTCCTAAATGCCGTCCGT 58.879 50.000 0.00 0.00 0.00 4.69
1051 2753 2.346545 CCGTCCGTTTTAAGAATCCGAC 59.653 50.000 0.00 0.00 0.00 4.79
1061 2763 0.469331 AGAATCCGACGGCCCAGATA 60.469 55.000 9.66 0.00 0.00 1.98
1086 2788 4.856664 CGTATCACGGTAGCATCTAAGTT 58.143 43.478 0.00 0.00 38.08 2.66
1399 3103 0.690762 TTCGGAGGGGTTCTTCAAGG 59.309 55.000 0.00 0.00 0.00 3.61
1475 3179 1.715519 CTATTTTGCACTGTGTTGCGC 59.284 47.619 9.86 0.00 46.20 6.09
1576 3280 1.504275 AACCCCCTGAAGCAGCATCT 61.504 55.000 0.00 0.00 0.00 2.90
1630 3334 1.165270 GGTATCTGCAAACGCCAACT 58.835 50.000 0.00 0.00 0.00 3.16
1648 3352 0.173708 CTAAGGACAGGTGAGGCGTC 59.826 60.000 0.00 0.00 0.00 5.19
1817 3521 7.452880 TGTTTGAATTGTAGAGGAAGGATTG 57.547 36.000 0.00 0.00 0.00 2.67
1907 3611 7.862372 GCACTTCAAATTTCATGAAACTGTAGA 59.138 33.333 27.62 18.38 36.43 2.59
1976 3680 2.233922 AGTGGTTATCCAGTTCGTCCTG 59.766 50.000 0.00 0.00 44.20 3.86
2158 3862 6.638468 CCTGCTCATTTTTGTACTTCTGTTTC 59.362 38.462 0.00 0.00 0.00 2.78
2159 3863 7.333528 TGCTCATTTTTGTACTTCTGTTTCT 57.666 32.000 0.00 0.00 0.00 2.52
2681 4386 2.166870 TGCCAATGATGCAGGAAATGAC 59.833 45.455 0.00 0.00 34.05 3.06
2743 4448 8.281212 AGCAAAACTTTTAGAAGAACTCAAGA 57.719 30.769 0.00 0.00 36.69 3.02
2903 4609 2.398588 AGAAGGGCCGAACATCTGATA 58.601 47.619 0.00 0.00 0.00 2.15
3162 4868 1.060163 AGGTGTGGGTGTACTGGCTT 61.060 55.000 0.00 0.00 0.00 4.35
3240 4946 4.096681 TCCTCTGGTAGAAGCTCATTTCA 58.903 43.478 0.00 0.00 0.00 2.69
3319 5025 0.034380 CTCGTACAGTCCTCAGGGGA 60.034 60.000 0.00 0.00 42.77 4.81
3440 5146 5.390251 CGATGTTCTGACTGAAAATGGACAG 60.390 44.000 2.67 0.00 32.99 3.51
3766 5473 7.124901 TGGAGAAATGTCTTAGATAGTGAGCTT 59.875 37.037 0.00 0.00 32.80 3.74
3841 5548 5.059404 ACATTTATCTGCCTTTCCGTTTG 57.941 39.130 0.00 0.00 0.00 2.93
4020 5727 3.397482 GCTCACTCTTTCAAGAAGCTGA 58.603 45.455 4.97 0.11 34.03 4.26
4093 5800 5.471456 CCAGTTAGTCTCAGCAAATGAAAGT 59.529 40.000 0.00 0.00 37.52 2.66
4166 5873 3.304257 GCATTTGTCACTGTTCACAGAGG 60.304 47.826 14.00 5.64 46.59 3.69
4234 5941 4.737054 AGCTGCGGACAATTTTTATCAAG 58.263 39.130 0.00 0.00 0.00 3.02
4265 5972 3.902881 ACCAGACTGCTCTTATTCCTG 57.097 47.619 0.00 0.00 0.00 3.86
4466 6173 1.508808 GCAAACGTTCGTGGGGCTAA 61.509 55.000 0.00 0.00 0.00 3.09
4586 6293 5.941555 ATATTCTGTTCCTTCCGAGTTCT 57.058 39.130 0.00 0.00 0.00 3.01
4730 6437 7.915923 GGAAACTAATATTAGCTTTTGACCAGC 59.084 37.037 20.24 7.87 37.56 4.85
4792 6499 0.033208 TTTGCCCCCATCCAGATGTC 60.033 55.000 6.87 0.00 37.11 3.06
5072 6779 1.897560 CCCAGAGTTGGTGAACCTTC 58.102 55.000 0.37 0.00 43.40 3.46
5073 6780 1.545651 CCCAGAGTTGGTGAACCTTCC 60.546 57.143 0.37 0.00 43.40 3.46
5087 6794 4.159506 TGAACCTTCCTGTTGAAACCTTTG 59.840 41.667 0.00 0.00 31.06 2.77
5218 6925 8.822652 ATTTTGGTCAATTTTCTGATCACTTC 57.177 30.769 0.00 0.00 36.17 3.01
5230 6937 0.252479 ATCACTTCCTGAGCTGCCTG 59.748 55.000 0.00 0.00 30.20 4.85
5234 6941 1.681666 TTCCTGAGCTGCCTGGAAG 59.318 57.895 18.44 0.00 38.63 3.46
5432 7139 2.866762 GCTTTATTGTCTCTACCTGGCG 59.133 50.000 0.00 0.00 0.00 5.69
5638 7345 7.397221 TGATGAACCTCAAGTACATCAAATCT 58.603 34.615 0.00 0.00 42.38 2.40
5872 7579 9.595823 GTGTTCTAGAAGCAATACCATTTACTA 57.404 33.333 5.12 0.00 0.00 1.82
5911 7618 9.930693 TCCTGTTTATGTTTTTGTTTTACAGTT 57.069 25.926 0.00 0.00 31.08 3.16
6035 7742 4.897670 TCCTAAGGAAACCTATCCCTTACG 59.102 45.833 0.00 0.00 40.59 3.18
6036 7743 4.040095 CCTAAGGAAACCTATCCCTTACGG 59.960 50.000 0.00 0.00 40.59 4.02
6037 7744 1.767088 AGGAAACCTATCCCTTACGGC 59.233 52.381 0.00 0.00 40.59 5.68
6038 7745 1.202734 GGAAACCTATCCCTTACGGCC 60.203 57.143 0.00 0.00 33.05 6.13
6039 7746 1.767088 GAAACCTATCCCTTACGGCCT 59.233 52.381 0.00 0.00 0.00 5.19
6040 7747 1.889174 AACCTATCCCTTACGGCCTT 58.111 50.000 0.00 0.00 0.00 4.35
6041 7748 2.781403 ACCTATCCCTTACGGCCTTA 57.219 50.000 0.00 0.00 0.00 2.69
6042 7749 2.323599 ACCTATCCCTTACGGCCTTAC 58.676 52.381 0.00 0.00 0.00 2.34
6057 7764 4.683400 CGGCCTTACCAGAATTAGACATGT 60.683 45.833 0.00 0.00 39.03 3.21
6124 7831 2.162681 GTGGTACTGCTGCCATTTCTT 58.837 47.619 0.00 0.00 37.09 2.52
6148 7855 9.371136 CTTGTACTGAAAGATACAGCTTAATCA 57.629 33.333 7.60 0.00 38.74 2.57
6208 7917 4.794648 CCCGGCCCATTTGAGCGA 62.795 66.667 0.00 0.00 0.00 4.93
6209 7918 3.204827 CCGGCCCATTTGAGCGAG 61.205 66.667 0.00 0.00 0.00 5.03
6210 7919 2.125147 CGGCCCATTTGAGCGAGA 60.125 61.111 0.00 0.00 0.00 4.04
6211 7920 2.176273 CGGCCCATTTGAGCGAGAG 61.176 63.158 0.00 0.00 0.00 3.20
6212 7921 1.078143 GGCCCATTTGAGCGAGAGT 60.078 57.895 0.00 0.00 0.00 3.24
6213 7922 0.178068 GGCCCATTTGAGCGAGAGTA 59.822 55.000 0.00 0.00 0.00 2.59
6214 7923 1.576356 GCCCATTTGAGCGAGAGTAG 58.424 55.000 0.00 0.00 0.00 2.57
6215 7924 1.134670 GCCCATTTGAGCGAGAGTAGT 60.135 52.381 0.00 0.00 0.00 2.73
6216 7925 2.100916 GCCCATTTGAGCGAGAGTAGTA 59.899 50.000 0.00 0.00 0.00 1.82
6217 7926 3.707793 CCCATTTGAGCGAGAGTAGTAC 58.292 50.000 0.00 0.00 0.00 2.73
6218 7927 3.381908 CCCATTTGAGCGAGAGTAGTACT 59.618 47.826 1.37 1.37 0.00 2.73
6219 7928 4.579340 CCCATTTGAGCGAGAGTAGTACTA 59.421 45.833 1.88 0.00 0.00 1.82
6220 7929 5.278071 CCCATTTGAGCGAGAGTAGTACTAG 60.278 48.000 1.87 0.00 0.00 2.57
6221 7930 5.278071 CCATTTGAGCGAGAGTAGTACTAGG 60.278 48.000 1.87 0.00 0.00 3.02
6222 7931 4.750021 TTGAGCGAGAGTAGTACTAGGA 57.250 45.455 1.87 0.00 0.00 2.94
6223 7932 4.959560 TGAGCGAGAGTAGTACTAGGAT 57.040 45.455 1.87 0.00 0.00 3.24
6224 7933 4.633175 TGAGCGAGAGTAGTACTAGGATG 58.367 47.826 1.87 0.00 0.00 3.51
6225 7934 3.998341 GAGCGAGAGTAGTACTAGGATGG 59.002 52.174 1.87 0.00 0.00 3.51
6226 7935 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
6227 7936 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
6228 7937 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
6229 7938 4.400120 GAGAGTAGTACTAGGATGGGTGG 58.600 52.174 1.87 0.00 0.00 4.61
6230 7939 2.892215 GAGTAGTACTAGGATGGGTGGC 59.108 54.545 1.87 0.00 0.00 5.01
6231 7940 1.969208 GTAGTACTAGGATGGGTGGCC 59.031 57.143 1.87 0.00 0.00 5.36
6232 7941 0.642710 AGTACTAGGATGGGTGGCCT 59.357 55.000 3.32 0.00 38.31 5.19
6233 7942 1.049402 GTACTAGGATGGGTGGCCTC 58.951 60.000 3.32 0.00 35.73 4.70
6234 7943 0.105142 TACTAGGATGGGTGGCCTCC 60.105 60.000 15.90 15.90 35.73 4.30
6235 7944 1.074167 CTAGGATGGGTGGCCTCCT 60.074 63.158 22.80 18.46 42.11 3.69
6236 7945 1.384502 TAGGATGGGTGGCCTCCTG 60.385 63.158 22.80 0.00 39.71 3.86
6237 7946 2.914734 TAGGATGGGTGGCCTCCTGG 62.915 65.000 22.80 0.00 39.71 4.45
6238 7947 3.813724 GATGGGTGGCCTCCTGGG 61.814 72.222 22.80 0.00 38.36 4.45
6239 7948 4.369591 ATGGGTGGCCTCCTGGGA 62.370 66.667 22.80 5.92 37.23 4.37
6240 7949 3.908712 ATGGGTGGCCTCCTGGGAA 62.909 63.158 22.80 5.19 37.23 3.97
6241 7950 3.732849 GGGTGGCCTCCTGGGAAG 61.733 72.222 22.80 0.00 37.23 3.46
6242 7951 2.936032 GGTGGCCTCCTGGGAAGT 60.936 66.667 16.91 0.00 37.23 3.01
6243 7952 2.671682 GTGGCCTCCTGGGAAGTC 59.328 66.667 3.32 0.00 37.23 3.01
6244 7953 3.003173 TGGCCTCCTGGGAAGTCG 61.003 66.667 3.32 0.00 37.23 4.18
6245 7954 3.003763 GGCCTCCTGGGAAGTCGT 61.004 66.667 0.00 0.00 37.23 4.34
6246 7955 2.579738 GCCTCCTGGGAAGTCGTC 59.420 66.667 0.00 0.00 37.23 4.20
6247 7956 2.885861 CCTCCTGGGAAGTCGTCG 59.114 66.667 0.00 0.00 37.23 5.12
6248 7957 1.977544 CCTCCTGGGAAGTCGTCGT 60.978 63.158 0.00 0.00 37.23 4.34
6249 7958 1.213013 CTCCTGGGAAGTCGTCGTG 59.787 63.158 0.00 0.00 0.00 4.35
6250 7959 1.228337 TCCTGGGAAGTCGTCGTGA 60.228 57.895 0.00 0.00 0.00 4.35
6251 7960 0.824595 TCCTGGGAAGTCGTCGTGAA 60.825 55.000 0.00 0.00 0.00 3.18
6252 7961 0.032952 CCTGGGAAGTCGTCGTGAAA 59.967 55.000 0.00 0.00 0.00 2.69
6253 7962 1.419374 CTGGGAAGTCGTCGTGAAAG 58.581 55.000 0.00 0.00 0.00 2.62
6254 7963 0.032952 TGGGAAGTCGTCGTGAAAGG 59.967 55.000 0.00 0.00 0.00 3.11
6255 7964 0.669625 GGGAAGTCGTCGTGAAAGGG 60.670 60.000 0.00 0.00 0.00 3.95
6256 7965 0.033090 GGAAGTCGTCGTGAAAGGGT 59.967 55.000 0.00 0.00 0.00 4.34
6257 7966 1.539712 GGAAGTCGTCGTGAAAGGGTT 60.540 52.381 0.00 0.00 0.00 4.11
6258 7967 2.207590 GAAGTCGTCGTGAAAGGGTTT 58.792 47.619 0.00 0.00 0.00 3.27
6259 7968 1.861971 AGTCGTCGTGAAAGGGTTTC 58.138 50.000 0.00 0.00 40.08 2.78
6260 7969 1.137479 AGTCGTCGTGAAAGGGTTTCA 59.863 47.619 0.00 0.00 46.68 2.69
6271 7980 6.652205 TGAAAGGGTTTCATATCTAAGGGT 57.348 37.500 0.00 0.00 44.21 4.34
6272 7981 7.039722 TGAAAGGGTTTCATATCTAAGGGTT 57.960 36.000 0.00 0.00 44.21 4.11
6273 7982 6.889722 TGAAAGGGTTTCATATCTAAGGGTTG 59.110 38.462 0.00 0.00 44.21 3.77
6274 7983 6.402981 AAGGGTTTCATATCTAAGGGTTGT 57.597 37.500 0.00 0.00 0.00 3.32
6275 7984 5.755849 AGGGTTTCATATCTAAGGGTTGTG 58.244 41.667 0.00 0.00 0.00 3.33
6276 7985 5.491078 AGGGTTTCATATCTAAGGGTTGTGA 59.509 40.000 0.00 0.00 0.00 3.58
6277 7986 6.160459 AGGGTTTCATATCTAAGGGTTGTGAT 59.840 38.462 0.00 0.00 0.00 3.06
6278 7987 7.349859 AGGGTTTCATATCTAAGGGTTGTGATA 59.650 37.037 0.00 0.00 0.00 2.15
6279 7988 7.661847 GGGTTTCATATCTAAGGGTTGTGATAG 59.338 40.741 0.00 0.00 0.00 2.08
6280 7989 7.661847 GGTTTCATATCTAAGGGTTGTGATAGG 59.338 40.741 0.00 0.00 0.00 2.57
6281 7990 6.360370 TCATATCTAAGGGTTGTGATAGGC 57.640 41.667 0.00 0.00 0.00 3.93
6282 7991 6.084738 TCATATCTAAGGGTTGTGATAGGCT 58.915 40.000 0.00 0.00 0.00 4.58
6283 7992 6.558775 TCATATCTAAGGGTTGTGATAGGCTT 59.441 38.462 0.00 0.00 0.00 4.35
6284 7993 4.487714 TCTAAGGGTTGTGATAGGCTTG 57.512 45.455 0.00 0.00 0.00 4.01
6285 7994 2.514458 AAGGGTTGTGATAGGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
6286 7995 1.372501 AGGGTTGTGATAGGCTTGGT 58.627 50.000 0.00 0.00 0.00 3.67
6287 7996 1.004745 AGGGTTGTGATAGGCTTGGTG 59.995 52.381 0.00 0.00 0.00 4.17
6288 7997 1.004277 GGGTTGTGATAGGCTTGGTGA 59.996 52.381 0.00 0.00 0.00 4.02
6289 7998 2.359900 GGTTGTGATAGGCTTGGTGAG 58.640 52.381 0.00 0.00 0.00 3.51
6303 8012 2.645802 TGGTGAGCCAACGTAAAAACT 58.354 42.857 0.00 0.00 42.83 2.66
6304 8013 3.806380 TGGTGAGCCAACGTAAAAACTA 58.194 40.909 0.00 0.00 42.83 2.24
6305 8014 3.810941 TGGTGAGCCAACGTAAAAACTAG 59.189 43.478 0.00 0.00 42.83 2.57
6306 8015 3.364664 GGTGAGCCAACGTAAAAACTAGC 60.365 47.826 0.00 0.00 34.09 3.42
6307 8016 2.809696 TGAGCCAACGTAAAAACTAGCC 59.190 45.455 0.00 0.00 0.00 3.93
6308 8017 2.809696 GAGCCAACGTAAAAACTAGCCA 59.190 45.455 0.00 0.00 0.00 4.75
6309 8018 2.812011 AGCCAACGTAAAAACTAGCCAG 59.188 45.455 0.00 0.00 0.00 4.85
6310 8019 2.551032 GCCAACGTAAAAACTAGCCAGT 59.449 45.455 0.00 0.00 36.19 4.00
6311 8020 3.364664 GCCAACGTAAAAACTAGCCAGTC 60.365 47.826 0.00 0.00 32.29 3.51
6312 8021 4.062991 CCAACGTAAAAACTAGCCAGTCT 58.937 43.478 0.00 0.00 32.29 3.24
6313 8022 4.514066 CCAACGTAAAAACTAGCCAGTCTT 59.486 41.667 0.00 0.00 32.29 3.01
6314 8023 5.008316 CCAACGTAAAAACTAGCCAGTCTTT 59.992 40.000 0.00 0.00 32.29 2.52
6315 8024 6.459161 CCAACGTAAAAACTAGCCAGTCTTTT 60.459 38.462 0.00 0.85 32.29 2.27
6316 8025 6.056428 ACGTAAAAACTAGCCAGTCTTTTG 57.944 37.500 12.02 0.82 32.29 2.44
6317 8026 5.008316 ACGTAAAAACTAGCCAGTCTTTTGG 59.992 40.000 12.02 8.37 41.35 3.28
6318 8027 4.937201 AAAAACTAGCCAGTCTTTTGGG 57.063 40.909 0.00 0.00 38.72 4.12
6320 8029 4.717279 AAACTAGCCAGTCTTTTGGGTA 57.283 40.909 4.17 4.17 46.57 3.69
6321 8030 4.929146 AACTAGCCAGTCTTTTGGGTAT 57.071 40.909 4.61 0.00 46.74 2.73
6322 8031 4.222124 ACTAGCCAGTCTTTTGGGTATG 57.778 45.455 4.61 2.96 46.74 2.39
6323 8032 3.844211 ACTAGCCAGTCTTTTGGGTATGA 59.156 43.478 4.61 0.00 46.74 2.15
6324 8033 3.806949 AGCCAGTCTTTTGGGTATGAA 57.193 42.857 0.00 0.00 46.57 2.57
6325 8034 4.112634 AGCCAGTCTTTTGGGTATGAAA 57.887 40.909 0.00 0.00 46.57 2.69
6326 8035 3.826729 AGCCAGTCTTTTGGGTATGAAAC 59.173 43.478 0.00 0.00 46.57 2.78
6327 8036 5.294122 AGCCAGTCTTTTGGGTATGAAACC 61.294 45.833 0.00 0.00 46.57 3.27
6347 8056 2.822764 CCATTTGGGCGAGAGTAGTAC 58.177 52.381 0.00 0.00 0.00 2.73
6348 8057 2.431057 CCATTTGGGCGAGAGTAGTACT 59.569 50.000 1.37 1.37 0.00 2.73
6349 8058 3.635373 CCATTTGGGCGAGAGTAGTACTA 59.365 47.826 1.88 0.00 0.00 1.82
6350 8059 4.261656 CCATTTGGGCGAGAGTAGTACTAG 60.262 50.000 1.87 0.00 0.00 2.57
6351 8060 2.634815 TGGGCGAGAGTAGTACTAGG 57.365 55.000 1.87 0.00 0.00 3.02
6352 8061 2.121948 TGGGCGAGAGTAGTACTAGGA 58.878 52.381 1.87 0.00 0.00 2.94
6353 8062 2.709934 TGGGCGAGAGTAGTACTAGGAT 59.290 50.000 1.87 0.00 0.00 3.24
6354 8063 3.075884 GGGCGAGAGTAGTACTAGGATG 58.924 54.545 1.87 0.00 0.00 3.51
6355 8064 3.075884 GGCGAGAGTAGTACTAGGATGG 58.924 54.545 1.87 0.00 0.00 3.51
6356 8065 3.075884 GCGAGAGTAGTACTAGGATGGG 58.924 54.545 1.87 0.00 0.00 4.00
6357 8066 3.496515 GCGAGAGTAGTACTAGGATGGGT 60.497 52.174 1.87 0.00 0.00 4.51
6358 8067 4.066490 CGAGAGTAGTACTAGGATGGGTG 58.934 52.174 1.87 0.00 0.00 4.61
6359 8068 4.202336 CGAGAGTAGTACTAGGATGGGTGA 60.202 50.000 1.87 0.00 0.00 4.02
6360 8069 5.051409 AGAGTAGTACTAGGATGGGTGAC 57.949 47.826 1.87 0.00 0.00 3.67
6372 8081 4.234673 GGTGACCTCCTGGGAAGT 57.765 61.111 0.00 0.00 38.76 3.01
6373 8082 1.984020 GGTGACCTCCTGGGAAGTC 59.016 63.158 10.52 10.52 36.44 3.01
6374 8083 1.554583 GGTGACCTCCTGGGAAGTCC 61.555 65.000 13.79 6.97 35.38 3.85
6375 8084 0.545548 GTGACCTCCTGGGAAGTCCT 60.546 60.000 13.79 0.00 35.38 3.85
6376 8085 0.252284 TGACCTCCTGGGAAGTCCTC 60.252 60.000 13.79 0.00 35.38 3.71
6377 8086 1.305381 ACCTCCTGGGAAGTCCTCG 60.305 63.158 0.00 0.00 38.76 4.63
6378 8087 1.305381 CCTCCTGGGAAGTCCTCGT 60.305 63.158 0.00 0.00 37.23 4.18
6379 8088 1.608717 CCTCCTGGGAAGTCCTCGTG 61.609 65.000 0.00 0.00 37.23 4.35
6380 8089 0.612174 CTCCTGGGAAGTCCTCGTGA 60.612 60.000 0.00 0.00 36.20 4.35
6381 8090 0.178944 TCCTGGGAAGTCCTCGTGAA 60.179 55.000 0.00 0.00 36.20 3.18
6382 8091 0.685097 CCTGGGAAGTCCTCGTGAAA 59.315 55.000 0.00 0.00 36.20 2.69
6383 8092 1.338200 CCTGGGAAGTCCTCGTGAAAG 60.338 57.143 0.00 0.00 36.20 2.62
6384 8093 0.685097 TGGGAAGTCCTCGTGAAAGG 59.315 55.000 0.00 0.00 37.81 3.11
6385 8094 0.036294 GGGAAGTCCTCGTGAAAGGG 60.036 60.000 0.00 0.00 37.02 3.95
6386 8095 0.685660 GGAAGTCCTCGTGAAAGGGT 59.314 55.000 0.00 0.00 37.02 4.34
6387 8096 1.071857 GGAAGTCCTCGTGAAAGGGTT 59.928 52.381 0.00 0.00 37.02 4.11
6388 8097 2.486727 GGAAGTCCTCGTGAAAGGGTTT 60.487 50.000 0.00 0.00 37.02 3.27
6389 8098 2.545537 AGTCCTCGTGAAAGGGTTTC 57.454 50.000 0.00 0.00 40.08 2.78
6390 8099 1.766496 AGTCCTCGTGAAAGGGTTTCA 59.234 47.619 0.00 0.00 46.68 2.69
6400 8109 5.975988 TGAAAGGGTTTCATATCTAGCCT 57.024 39.130 0.00 0.00 44.21 4.58
6402 8111 6.827727 TGAAAGGGTTTCATATCTAGCCTAC 58.172 40.000 0.00 0.00 44.21 3.18
6403 8112 5.827326 AAGGGTTTCATATCTAGCCTACC 57.173 43.478 0.00 0.00 38.75 3.18
6404 8113 4.168883 AGGGTTTCATATCTAGCCTACCC 58.831 47.826 0.00 0.00 43.42 3.69
6405 8114 3.263681 GGGTTTCATATCTAGCCTACCCC 59.736 52.174 0.00 0.00 38.39 4.95
6406 8115 3.908103 GGTTTCATATCTAGCCTACCCCA 59.092 47.826 0.00 0.00 0.00 4.96
6407 8116 4.349930 GGTTTCATATCTAGCCTACCCCAA 59.650 45.833 0.00 0.00 0.00 4.12
6408 8117 5.306394 GTTTCATATCTAGCCTACCCCAAC 58.694 45.833 0.00 0.00 0.00 3.77
6409 8118 4.487282 TCATATCTAGCCTACCCCAACT 57.513 45.455 0.00 0.00 0.00 3.16
6410 8119 4.827789 TCATATCTAGCCTACCCCAACTT 58.172 43.478 0.00 0.00 0.00 2.66
6411 8120 5.224441 TCATATCTAGCCTACCCCAACTTT 58.776 41.667 0.00 0.00 0.00 2.66
6412 8121 5.670361 TCATATCTAGCCTACCCCAACTTTT 59.330 40.000 0.00 0.00 0.00 2.27
6413 8122 4.948062 ATCTAGCCTACCCCAACTTTTT 57.052 40.909 0.00 0.00 0.00 1.94
6433 8142 6.651975 TTTTTGGGATTAAAGGCTTCGTAA 57.348 33.333 0.00 0.00 0.00 3.18
6434 8143 5.890424 TTTGGGATTAAAGGCTTCGTAAG 57.110 39.130 0.00 0.00 0.00 2.34
6444 8153 2.768834 CTTCGTAAGCAAGAGGCCC 58.231 57.895 0.00 0.00 46.50 5.80
6445 8154 1.079405 TTCGTAAGCAAGAGGCCCG 60.079 57.895 0.00 0.00 46.50 6.13
6446 8155 2.511600 CGTAAGCAAGAGGCCCGG 60.512 66.667 0.00 0.00 46.50 5.73
6447 8156 2.824489 GTAAGCAAGAGGCCCGGC 60.824 66.667 0.00 0.00 46.50 6.13
6459 8168 2.115266 CCCGGCCCCCATATTGTC 59.885 66.667 0.00 0.00 0.00 3.18
6715 8424 2.418368 TGGGTCATCACCTTATGTGC 57.582 50.000 0.00 0.00 45.03 4.57
6899 8849 9.603921 ATGCAATAAATACCTTTTTCCAATCTG 57.396 29.630 0.00 0.00 0.00 2.90
6957 8907 6.419116 GCAATCAGTTCTTTGTTTCTCCTTTC 59.581 38.462 0.00 0.00 0.00 2.62
7146 9096 5.696724 GGTTATCCTACATCATTGAAGACGG 59.303 44.000 0.00 0.00 0.00 4.79
7148 9098 5.614324 ATCCTACATCATTGAAGACGGAA 57.386 39.130 0.00 0.00 0.00 4.30
7161 9111 1.275573 AGACGGAACTTTGGGAGTAGC 59.724 52.381 0.00 0.00 37.72 3.58
7224 9174 7.375834 CCTGCATGCATGATCTTATACAAATT 58.624 34.615 30.64 0.00 0.00 1.82
7251 9201 7.330946 TCGGCTGTTGGATATCTTATTAATTCG 59.669 37.037 2.05 0.00 0.00 3.34
7370 9320 7.544804 AAGATGCCTTTGACTTTCCTATTTT 57.455 32.000 0.00 0.00 0.00 1.82
7399 9349 5.029807 TGATGCATTTTCCCTGTCGTATA 57.970 39.130 0.00 0.00 0.00 1.47
7416 9366 5.625721 GTCGTATATTCCGTTCTCACATCAG 59.374 44.000 0.00 0.00 0.00 2.90
7545 9495 1.274712 ACCTCCTGAAGCCTGAAGAG 58.725 55.000 0.00 0.00 0.00 2.85
7568 9518 4.463070 GGTTAAACCCCTGTGACTTGTTA 58.537 43.478 0.00 0.00 30.04 2.41
7569 9519 4.276678 GGTTAAACCCCTGTGACTTGTTAC 59.723 45.833 0.00 0.00 30.04 2.50
7570 9520 3.945640 AAACCCCTGTGACTTGTTACT 57.054 42.857 0.00 0.00 0.00 2.24
7571 9521 3.487120 AACCCCTGTGACTTGTTACTC 57.513 47.619 0.00 0.00 0.00 2.59
7633 9584 4.503741 GCTTAACAAACATGAAGCCTGA 57.496 40.909 0.00 0.00 38.68 3.86
7682 9633 3.966215 GCAAAGAGCACCGTAGCA 58.034 55.556 0.00 0.00 44.79 3.49
7700 9651 2.679996 GGCAGGCAATTTCCCCGT 60.680 61.111 0.00 0.00 0.00 5.28
7851 9802 7.629222 GCAAGTGGTAGCAAATTGATGAACTAT 60.629 37.037 19.78 0.00 0.00 2.12
7870 9821 8.962679 TGAACTATTTGTCCTTTACTGTGTTTT 58.037 29.630 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.751924 TGCACGCCTAACCAAAAGTTT 59.248 42.857 0.00 0.00 40.05 2.66
119 120 8.778059 ACATTGAGTAAAATAGTATTCCCTCCA 58.222 33.333 0.00 0.00 0.00 3.86
318 320 4.048504 GGTGCAAATACGAAGCAAAACTT 58.951 39.130 0.00 0.00 42.98 2.66
558 561 5.827797 CCGGAAATCCTGAAATAAATCCAGA 59.172 40.000 0.00 0.00 0.00 3.86
559 562 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
562 565 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
584 587 3.119101 TCTCTTCCCACTGAAAGCGTATC 60.119 47.826 0.00 0.00 37.60 2.24
643 646 8.083828 AGCCGGTATATCATCTTGAGATTTAT 57.916 34.615 1.90 0.00 30.15 1.40
694 697 1.494824 CCTATTAACGCACGCCCTAC 58.505 55.000 0.00 0.00 0.00 3.18
712 961 1.925229 TACGCGCATACACTTAACCC 58.075 50.000 5.73 0.00 0.00 4.11
717 966 5.681543 CGATCATATATACGCGCATACACTT 59.318 40.000 5.73 0.00 0.00 3.16
812 1063 3.795101 CGGTAAGTTACCTATGACTTGCG 59.205 47.826 25.91 8.21 46.81 4.85
821 1072 3.055891 GGCTCCAAACGGTAAGTTACCTA 60.056 47.826 25.91 7.07 46.81 3.08
822 1073 2.289882 GGCTCCAAACGGTAAGTTACCT 60.290 50.000 25.91 12.85 46.81 3.08
894 2596 5.362430 GGCCCAAAATCTTGTATCATGGTAA 59.638 40.000 0.00 0.00 0.00 2.85
898 2600 3.381272 ACGGCCCAAAATCTTGTATCATG 59.619 43.478 0.00 0.00 0.00 3.07
899 2601 3.631250 ACGGCCCAAAATCTTGTATCAT 58.369 40.909 0.00 0.00 0.00 2.45
901 2603 2.031683 CGACGGCCCAAAATCTTGTATC 59.968 50.000 0.00 0.00 0.00 2.24
915 2617 0.319125 GATCTGAGAATCCGACGGCC 60.319 60.000 9.66 0.00 28.86 6.13
978 2680 3.880490 TGTGCGTGATTTTTGGACTACTT 59.120 39.130 0.00 0.00 0.00 2.24
981 2683 2.811431 CCTGTGCGTGATTTTTGGACTA 59.189 45.455 0.00 0.00 0.00 2.59
1016 2718 1.202533 CGGACGGCATTTAGGAGATGT 60.203 52.381 0.00 0.00 0.00 3.06
1025 2727 4.380128 GGATTCTTAAAACGGACGGCATTT 60.380 41.667 0.00 0.00 0.00 2.32
1026 2728 3.128068 GGATTCTTAAAACGGACGGCATT 59.872 43.478 0.00 0.00 0.00 3.56
1037 2739 1.003349 TGGGCCGTCGGATTCTTAAAA 59.997 47.619 17.49 0.00 0.00 1.52
1051 2753 1.183030 TGATACGGGTATCTGGGCCG 61.183 60.000 17.14 0.00 41.80 6.13
1107 2809 0.251564 TGGCAAATTCCGTCATGGGT 60.252 50.000 0.00 0.00 38.76 4.51
1108 2810 0.894141 TTGGCAAATTCCGTCATGGG 59.106 50.000 0.00 0.00 38.76 4.00
1399 3103 1.849219 CTAAATCGACGAGTGCTCAGC 59.151 52.381 3.01 0.00 0.00 4.26
1559 3263 0.548031 TAAGATGCTGCTTCAGGGGG 59.452 55.000 16.56 0.00 31.21 5.40
1560 3264 2.621998 CAATAAGATGCTGCTTCAGGGG 59.378 50.000 16.56 0.45 31.21 4.79
1576 3280 4.122776 GAGAAGCTTCGAGATGCCAATAA 58.877 43.478 20.43 0.00 32.53 1.40
1630 3334 1.255667 GGACGCCTCACCTGTCCTTA 61.256 60.000 3.46 0.00 46.86 2.69
1648 3352 2.051345 GTGCGACCAACAAAGCGG 60.051 61.111 0.00 0.00 0.00 5.52
1918 3622 2.486982 CAGCAGGATTCACTTCACAAGG 59.513 50.000 0.00 0.00 0.00 3.61
1976 3680 7.227512 AGCTGTTAGGACATTCAAGCAATATAC 59.772 37.037 0.00 0.00 34.72 1.47
2158 3862 7.651808 TGCAGAGATAACAAGAAAAAGGAAAG 58.348 34.615 0.00 0.00 0.00 2.62
2159 3863 7.581213 TGCAGAGATAACAAGAAAAAGGAAA 57.419 32.000 0.00 0.00 0.00 3.13
2377 4082 2.435805 TGAACTGTGACTCCAAAGCTCT 59.564 45.455 0.00 0.00 30.52 4.09
2681 4386 2.672961 TGACCACTCTGCTTTATCGG 57.327 50.000 0.00 0.00 0.00 4.18
2903 4609 6.980397 GTGAAACCATGAAATTCAACTGAGTT 59.020 34.615 0.00 0.00 35.07 3.01
3162 4868 2.373335 ACACCACCAATGCCAGTTAA 57.627 45.000 0.00 0.00 0.00 2.01
3240 4946 4.022068 CACACATATCCAAAGCTGTTGGTT 60.022 41.667 20.22 16.38 40.40 3.67
3319 5025 5.809001 TCAGGTTATCTGACAATGCTTTCT 58.191 37.500 0.00 0.00 46.71 2.52
3440 5146 2.087646 GCACAGAAGTTCTCCCATTCC 58.912 52.381 1.26 0.00 0.00 3.01
3623 5330 9.729281 AATGGTTTCTAAATCTGCATCATTTTT 57.271 25.926 8.61 0.00 0.00 1.94
3629 5336 5.653507 TGCAATGGTTTCTAAATCTGCATC 58.346 37.500 0.00 0.00 0.00 3.91
3766 5473 6.239572 CCTCCTTTTCTTGCTTTAATTCCCAA 60.240 38.462 0.00 0.00 0.00 4.12
4034 5741 6.082338 GGATCAAATCATGAATGACGTATGC 58.918 40.000 14.65 3.73 42.54 3.14
4093 5800 7.762615 AGGTCATATTCATTTCTTACGACGAAA 59.237 33.333 0.00 0.00 35.13 3.46
4234 5941 3.350833 AGCAGTCTGGTTCAATGATTCC 58.649 45.455 0.00 0.00 0.00 3.01
4466 6173 6.313519 TGGTAAGTTCTGGAATATGAAGCT 57.686 37.500 0.00 0.00 0.00 3.74
4586 6293 5.843969 TGTACCTTAGCAATCTGATATGGGA 59.156 40.000 8.25 0.00 37.72 4.37
4730 6437 0.962489 CTATCAGAGGTGCCCCTACG 59.038 60.000 0.00 0.00 42.86 3.51
4882 6589 9.678941 ACTGTACGTATATCACATGTTATGAAG 57.321 33.333 0.00 0.00 0.00 3.02
5072 6779 4.391405 AAGCTTCAAAGGTTTCAACAGG 57.609 40.909 0.00 0.00 43.61 4.00
5087 6794 6.753744 AGTGTTTCAAGACATTCAAAAGCTTC 59.246 34.615 0.00 0.00 0.00 3.86
5148 6855 3.910490 GCGGCAACCCAACAAGCA 61.910 61.111 0.00 0.00 0.00 3.91
5218 6925 0.179051 GATCTTCCAGGCAGCTCAGG 60.179 60.000 0.00 0.00 0.00 3.86
5230 6937 3.504134 TCAGTAGCGATGCTAGATCTTCC 59.496 47.826 0.00 0.00 42.11 3.46
5234 6941 4.679197 CAGTTTCAGTAGCGATGCTAGATC 59.321 45.833 0.00 0.00 42.11 2.75
5432 7139 4.095610 CAACAGAACTCCACAAACGTTTC 58.904 43.478 11.37 0.00 0.00 2.78
5638 7345 4.136796 GTGCCCATATTTGTGCAGAGATA 58.863 43.478 0.00 0.00 36.89 1.98
5872 7579 8.974060 AACATAAACAGGATTACGTAATGGAT 57.026 30.769 24.90 7.96 0.00 3.41
5916 7623 9.248291 TCATGAAAAGAGAAACTTAACAATTGC 57.752 29.630 5.05 0.00 37.93 3.56
6035 7742 4.576463 CACATGTCTAATTCTGGTAAGGCC 59.424 45.833 0.00 0.00 37.90 5.19
6036 7743 5.186198 ACACATGTCTAATTCTGGTAAGGC 58.814 41.667 0.00 0.00 0.00 4.35
6037 7744 6.406370 TGACACATGTCTAATTCTGGTAAGG 58.594 40.000 12.98 0.00 44.99 2.69
6038 7745 7.063898 CACTGACACATGTCTAATTCTGGTAAG 59.936 40.741 12.98 0.00 44.99 2.34
6039 7746 6.873605 CACTGACACATGTCTAATTCTGGTAA 59.126 38.462 12.98 0.00 44.99 2.85
6040 7747 6.014584 ACACTGACACATGTCTAATTCTGGTA 60.015 38.462 12.98 0.00 44.99 3.25
6041 7748 5.221722 ACACTGACACATGTCTAATTCTGGT 60.222 40.000 12.98 0.00 44.99 4.00
6042 7749 5.240891 ACACTGACACATGTCTAATTCTGG 58.759 41.667 12.98 0.00 44.99 3.86
6057 7764 3.819564 AGAACTTGCAGTACACTGACA 57.180 42.857 13.50 7.78 46.59 3.58
6102 7809 2.162681 GAAATGGCAGCAGTACCACTT 58.837 47.619 0.00 0.00 39.19 3.16
6124 7831 8.531982 AGTGATTAAGCTGTATCTTTCAGTACA 58.468 33.333 9.10 0.00 35.60 2.90
6199 7908 5.682659 TCCTAGTACTACTCTCGCTCAAAT 58.317 41.667 0.00 0.00 0.00 2.32
6200 7909 5.095145 TCCTAGTACTACTCTCGCTCAAA 57.905 43.478 0.00 0.00 0.00 2.69
6201 7910 4.750021 TCCTAGTACTACTCTCGCTCAA 57.250 45.455 0.00 0.00 0.00 3.02
6202 7911 4.503469 CCATCCTAGTACTACTCTCGCTCA 60.503 50.000 0.00 0.00 0.00 4.26
6203 7912 3.998341 CCATCCTAGTACTACTCTCGCTC 59.002 52.174 0.00 0.00 0.00 5.03
6204 7913 3.244630 CCCATCCTAGTACTACTCTCGCT 60.245 52.174 0.00 0.00 0.00 4.93
6205 7914 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
6206 7915 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
6207 7916 4.400120 CCACCCATCCTAGTACTACTCTC 58.600 52.174 0.00 0.00 0.00 3.20
6208 7917 3.436761 GCCACCCATCCTAGTACTACTCT 60.437 52.174 0.00 0.00 0.00 3.24
6209 7918 2.892215 GCCACCCATCCTAGTACTACTC 59.108 54.545 0.00 0.00 0.00 2.59
6210 7919 2.425975 GGCCACCCATCCTAGTACTACT 60.426 54.545 0.00 0.00 0.00 2.57
6211 7920 1.969208 GGCCACCCATCCTAGTACTAC 59.031 57.143 0.00 0.00 0.00 2.73
6212 7921 1.864251 AGGCCACCCATCCTAGTACTA 59.136 52.381 5.01 1.89 0.00 1.82
6213 7922 0.642710 AGGCCACCCATCCTAGTACT 59.357 55.000 5.01 0.00 0.00 2.73
6214 7923 1.049402 GAGGCCACCCATCCTAGTAC 58.951 60.000 5.01 0.00 31.71 2.73
6215 7924 0.105142 GGAGGCCACCCATCCTAGTA 60.105 60.000 8.25 0.00 31.71 1.82
6216 7925 1.384643 GGAGGCCACCCATCCTAGT 60.385 63.158 8.25 0.00 31.71 2.57
6217 7926 1.074167 AGGAGGCCACCCATCCTAG 60.074 63.158 16.55 0.00 37.15 3.02
6218 7927 1.384502 CAGGAGGCCACCCATCCTA 60.385 63.158 16.55 0.00 36.94 2.94
6219 7928 2.693864 CAGGAGGCCACCCATCCT 60.694 66.667 16.55 10.33 38.51 3.24
6220 7929 3.813724 CCAGGAGGCCACCCATCC 61.814 72.222 16.55 7.82 0.00 3.51
6221 7930 3.813724 CCCAGGAGGCCACCCATC 61.814 72.222 16.55 0.00 0.00 3.51
6222 7931 3.908712 TTCCCAGGAGGCCACCCAT 62.909 63.158 16.55 0.00 34.51 4.00
6223 7932 4.608514 TTCCCAGGAGGCCACCCA 62.609 66.667 16.55 0.00 34.51 4.51
6224 7933 3.732849 CTTCCCAGGAGGCCACCC 61.733 72.222 16.55 11.00 34.51 4.61
6225 7934 2.936032 ACTTCCCAGGAGGCCACC 60.936 66.667 11.96 11.96 34.51 4.61
6226 7935 2.671682 GACTTCCCAGGAGGCCAC 59.328 66.667 5.01 0.00 34.51 5.01
6227 7936 3.003173 CGACTTCCCAGGAGGCCA 61.003 66.667 5.01 0.00 34.51 5.36
6228 7937 3.003763 ACGACTTCCCAGGAGGCC 61.004 66.667 0.00 0.00 34.51 5.19
6229 7938 2.579738 GACGACTTCCCAGGAGGC 59.420 66.667 0.00 0.00 34.51 4.70
6230 7939 1.977544 ACGACGACTTCCCAGGAGG 60.978 63.158 0.00 0.00 0.00 4.30
6231 7940 1.213013 CACGACGACTTCCCAGGAG 59.787 63.158 0.00 0.00 0.00 3.69
6232 7941 0.824595 TTCACGACGACTTCCCAGGA 60.825 55.000 0.00 0.00 0.00 3.86
6233 7942 0.032952 TTTCACGACGACTTCCCAGG 59.967 55.000 0.00 0.00 0.00 4.45
6234 7943 1.419374 CTTTCACGACGACTTCCCAG 58.581 55.000 0.00 0.00 0.00 4.45
6235 7944 0.032952 CCTTTCACGACGACTTCCCA 59.967 55.000 0.00 0.00 0.00 4.37
6236 7945 0.669625 CCCTTTCACGACGACTTCCC 60.670 60.000 0.00 0.00 0.00 3.97
6237 7946 0.033090 ACCCTTTCACGACGACTTCC 59.967 55.000 0.00 0.00 0.00 3.46
6238 7947 1.861971 AACCCTTTCACGACGACTTC 58.138 50.000 0.00 0.00 0.00 3.01
6239 7948 2.207590 GAAACCCTTTCACGACGACTT 58.792 47.619 0.00 0.00 39.45 3.01
6240 7949 1.137479 TGAAACCCTTTCACGACGACT 59.863 47.619 0.00 0.00 44.21 4.18
6241 7950 1.574134 TGAAACCCTTTCACGACGAC 58.426 50.000 0.00 0.00 44.21 4.34
6249 7958 6.890268 ACAACCCTTAGATATGAAACCCTTTC 59.110 38.462 0.00 0.00 40.08 2.62
6250 7959 6.663523 CACAACCCTTAGATATGAAACCCTTT 59.336 38.462 0.00 0.00 0.00 3.11
6251 7960 6.011981 TCACAACCCTTAGATATGAAACCCTT 60.012 38.462 0.00 0.00 0.00 3.95
6252 7961 5.491078 TCACAACCCTTAGATATGAAACCCT 59.509 40.000 0.00 0.00 0.00 4.34
6253 7962 5.751586 TCACAACCCTTAGATATGAAACCC 58.248 41.667 0.00 0.00 0.00 4.11
6254 7963 7.661847 CCTATCACAACCCTTAGATATGAAACC 59.338 40.741 0.00 0.00 0.00 3.27
6255 7964 7.173390 GCCTATCACAACCCTTAGATATGAAAC 59.827 40.741 0.00 0.00 0.00 2.78
6256 7965 7.072454 AGCCTATCACAACCCTTAGATATGAAA 59.928 37.037 0.00 0.00 0.00 2.69
6257 7966 6.558775 AGCCTATCACAACCCTTAGATATGAA 59.441 38.462 0.00 0.00 0.00 2.57
6258 7967 6.084738 AGCCTATCACAACCCTTAGATATGA 58.915 40.000 0.00 0.00 0.00 2.15
6259 7968 6.365970 AGCCTATCACAACCCTTAGATATG 57.634 41.667 0.00 0.00 0.00 1.78
6260 7969 6.240002 CCAAGCCTATCACAACCCTTAGATAT 60.240 42.308 0.00 0.00 0.00 1.63
6261 7970 5.071788 CCAAGCCTATCACAACCCTTAGATA 59.928 44.000 0.00 0.00 0.00 1.98
6262 7971 4.141390 CCAAGCCTATCACAACCCTTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
6263 7972 3.199946 CCAAGCCTATCACAACCCTTAGA 59.800 47.826 0.00 0.00 0.00 2.10
6264 7973 3.054361 ACCAAGCCTATCACAACCCTTAG 60.054 47.826 0.00 0.00 0.00 2.18
6265 7974 2.916934 ACCAAGCCTATCACAACCCTTA 59.083 45.455 0.00 0.00 0.00 2.69
6266 7975 1.710809 ACCAAGCCTATCACAACCCTT 59.289 47.619 0.00 0.00 0.00 3.95
6267 7976 1.004745 CACCAAGCCTATCACAACCCT 59.995 52.381 0.00 0.00 0.00 4.34
6268 7977 1.004277 TCACCAAGCCTATCACAACCC 59.996 52.381 0.00 0.00 0.00 4.11
6269 7978 2.359900 CTCACCAAGCCTATCACAACC 58.640 52.381 0.00 0.00 0.00 3.77
6270 7979 1.740025 GCTCACCAAGCCTATCACAAC 59.260 52.381 0.00 0.00 45.92 3.32
6271 7980 2.113860 GCTCACCAAGCCTATCACAA 57.886 50.000 0.00 0.00 45.92 3.33
6272 7981 3.861341 GCTCACCAAGCCTATCACA 57.139 52.632 0.00 0.00 45.92 3.58
6284 7993 3.364664 GCTAGTTTTTACGTTGGCTCACC 60.365 47.826 0.00 0.00 0.00 4.02
6285 7994 3.364664 GGCTAGTTTTTACGTTGGCTCAC 60.365 47.826 0.00 0.00 0.00 3.51
6286 7995 2.809696 GGCTAGTTTTTACGTTGGCTCA 59.190 45.455 0.00 0.00 0.00 4.26
6287 7996 2.809696 TGGCTAGTTTTTACGTTGGCTC 59.190 45.455 0.00 0.00 0.00 4.70
6288 7997 2.812011 CTGGCTAGTTTTTACGTTGGCT 59.188 45.455 0.00 0.00 0.00 4.75
6289 7998 2.551032 ACTGGCTAGTTTTTACGTTGGC 59.449 45.455 0.00 0.00 31.66 4.52
6290 7999 4.062991 AGACTGGCTAGTTTTTACGTTGG 58.937 43.478 3.47 0.00 37.25 3.77
6291 8000 5.668558 AAGACTGGCTAGTTTTTACGTTG 57.331 39.130 3.47 0.00 37.25 4.10
6292 8001 6.459161 CCAAAAGACTGGCTAGTTTTTACGTT 60.459 38.462 17.28 1.45 39.50 3.99
6293 8002 5.008316 CCAAAAGACTGGCTAGTTTTTACGT 59.992 40.000 17.28 1.78 39.50 3.57
6294 8003 5.449304 CCAAAAGACTGGCTAGTTTTTACG 58.551 41.667 17.28 12.06 39.50 3.18
6295 8004 5.301045 ACCCAAAAGACTGGCTAGTTTTTAC 59.699 40.000 17.28 0.00 39.50 2.01
6296 8005 5.451354 ACCCAAAAGACTGGCTAGTTTTTA 58.549 37.500 17.28 0.00 39.50 1.52
6297 8006 4.286707 ACCCAAAAGACTGGCTAGTTTTT 58.713 39.130 12.22 12.22 41.44 1.94
6298 8007 3.910989 ACCCAAAAGACTGGCTAGTTTT 58.089 40.909 3.47 1.40 37.25 2.43
6299 8008 3.595190 ACCCAAAAGACTGGCTAGTTT 57.405 42.857 3.47 0.00 37.25 2.66
6300 8009 4.288626 TCATACCCAAAAGACTGGCTAGTT 59.711 41.667 3.47 0.00 37.25 2.24
6301 8010 3.844211 TCATACCCAAAAGACTGGCTAGT 59.156 43.478 0.69 0.69 40.66 2.57
6302 8011 4.487714 TCATACCCAAAAGACTGGCTAG 57.512 45.455 0.00 0.00 34.88 3.42
6303 8012 4.919774 TTCATACCCAAAAGACTGGCTA 57.080 40.909 0.00 0.00 34.88 3.93
6304 8013 3.806949 TTCATACCCAAAAGACTGGCT 57.193 42.857 0.00 0.00 34.88 4.75
6305 8014 3.056821 GGTTTCATACCCAAAAGACTGGC 60.057 47.826 0.00 0.00 41.43 4.85
6306 8015 4.783764 GGTTTCATACCCAAAAGACTGG 57.216 45.455 0.00 0.00 41.43 4.00
6327 8036 2.431057 AGTACTACTCTCGCCCAAATGG 59.569 50.000 0.00 0.00 37.09 3.16
6328 8037 3.802948 AGTACTACTCTCGCCCAAATG 57.197 47.619 0.00 0.00 0.00 2.32
6329 8038 3.890147 CCTAGTACTACTCTCGCCCAAAT 59.110 47.826 0.00 0.00 0.00 2.32
6330 8039 3.054139 TCCTAGTACTACTCTCGCCCAAA 60.054 47.826 0.00 0.00 0.00 3.28
6331 8040 2.507058 TCCTAGTACTACTCTCGCCCAA 59.493 50.000 0.00 0.00 0.00 4.12
6332 8041 2.121948 TCCTAGTACTACTCTCGCCCA 58.878 52.381 0.00 0.00 0.00 5.36
6333 8042 2.926778 TCCTAGTACTACTCTCGCCC 57.073 55.000 0.00 0.00 0.00 6.13
6334 8043 3.075884 CCATCCTAGTACTACTCTCGCC 58.924 54.545 0.00 0.00 0.00 5.54
6335 8044 3.075884 CCCATCCTAGTACTACTCTCGC 58.924 54.545 0.00 0.00 0.00 5.03
6336 8045 4.066490 CACCCATCCTAGTACTACTCTCG 58.934 52.174 0.00 0.00 0.00 4.04
6337 8046 5.065235 GTCACCCATCCTAGTACTACTCTC 58.935 50.000 0.00 0.00 0.00 3.20
6338 8047 4.141205 GGTCACCCATCCTAGTACTACTCT 60.141 50.000 0.00 0.00 0.00 3.24
6339 8048 4.141205 AGGTCACCCATCCTAGTACTACTC 60.141 50.000 0.00 0.00 31.66 2.59
6340 8049 3.792684 AGGTCACCCATCCTAGTACTACT 59.207 47.826 0.00 0.00 31.66 2.57
6341 8050 4.143543 GAGGTCACCCATCCTAGTACTAC 58.856 52.174 0.00 0.00 33.83 2.73
6342 8051 3.139770 GGAGGTCACCCATCCTAGTACTA 59.860 52.174 1.89 1.89 33.83 1.82
6343 8052 2.091222 GGAGGTCACCCATCCTAGTACT 60.091 54.545 0.00 0.00 33.83 2.73
6344 8053 2.091222 AGGAGGTCACCCATCCTAGTAC 60.091 54.545 2.60 0.00 36.91 2.73
6345 8054 2.091278 CAGGAGGTCACCCATCCTAGTA 60.091 54.545 4.27 0.00 36.69 1.82
6346 8055 1.019650 AGGAGGTCACCCATCCTAGT 58.980 55.000 2.60 0.00 36.91 2.57
6347 8056 1.418334 CAGGAGGTCACCCATCCTAG 58.582 60.000 4.27 0.00 36.69 3.02
6348 8057 0.031111 CCAGGAGGTCACCCATCCTA 60.031 60.000 4.27 0.00 36.69 2.94
6349 8058 1.307343 CCAGGAGGTCACCCATCCT 60.307 63.158 0.00 0.00 38.30 3.24
6350 8059 2.378634 CCCAGGAGGTCACCCATCC 61.379 68.421 0.00 0.00 0.00 3.51
6351 8060 0.914417 TTCCCAGGAGGTCACCCATC 60.914 60.000 0.00 0.00 36.75 3.51
6352 8061 0.916358 CTTCCCAGGAGGTCACCCAT 60.916 60.000 0.00 0.00 36.75 4.00
6353 8062 1.538876 CTTCCCAGGAGGTCACCCA 60.539 63.158 0.00 0.00 36.75 4.51
6354 8063 1.539124 ACTTCCCAGGAGGTCACCC 60.539 63.158 0.00 0.00 36.75 4.61
6355 8064 1.984020 GACTTCCCAGGAGGTCACC 59.016 63.158 20.66 0.00 46.32 4.02
6358 8067 1.324005 CGAGGACTTCCCAGGAGGTC 61.324 65.000 18.15 18.15 46.33 3.85
6359 8068 1.305381 CGAGGACTTCCCAGGAGGT 60.305 63.158 0.31 0.31 37.15 3.85
6360 8069 1.305381 ACGAGGACTTCCCAGGAGG 60.305 63.158 0.00 0.00 37.41 4.30
6361 8070 0.612174 TCACGAGGACTTCCCAGGAG 60.612 60.000 0.00 0.00 37.41 3.69
6362 8071 0.178944 TTCACGAGGACTTCCCAGGA 60.179 55.000 0.00 0.00 37.41 3.86
6363 8072 0.685097 TTTCACGAGGACTTCCCAGG 59.315 55.000 0.00 0.00 37.41 4.45
6364 8073 1.338200 CCTTTCACGAGGACTTCCCAG 60.338 57.143 0.00 0.00 39.25 4.45
6365 8074 0.685097 CCTTTCACGAGGACTTCCCA 59.315 55.000 0.00 0.00 39.25 4.37
6366 8075 0.036294 CCCTTTCACGAGGACTTCCC 60.036 60.000 0.00 0.00 39.25 3.97
6367 8076 0.685660 ACCCTTTCACGAGGACTTCC 59.314 55.000 0.00 0.00 39.25 3.46
6368 8077 2.545537 AACCCTTTCACGAGGACTTC 57.454 50.000 0.00 0.00 39.25 3.01
6369 8078 2.171870 TGAAACCCTTTCACGAGGACTT 59.828 45.455 0.00 0.00 44.21 3.01
6370 8079 1.766496 TGAAACCCTTTCACGAGGACT 59.234 47.619 0.00 0.00 44.21 3.85
6371 8080 2.249844 TGAAACCCTTTCACGAGGAC 57.750 50.000 0.00 0.00 44.21 3.85
6379 8088 6.231951 GGTAGGCTAGATATGAAACCCTTTC 58.768 44.000 0.00 0.00 40.08 2.62
6380 8089 5.073280 GGGTAGGCTAGATATGAAACCCTTT 59.927 44.000 8.73 0.00 41.75 3.11
6381 8090 4.597940 GGGTAGGCTAGATATGAAACCCTT 59.402 45.833 8.73 0.00 41.75 3.95
6382 8091 4.168883 GGGTAGGCTAGATATGAAACCCT 58.831 47.826 8.73 0.00 41.75 4.34
6383 8092 3.263681 GGGGTAGGCTAGATATGAAACCC 59.736 52.174 7.65 7.65 43.82 4.11
6384 8093 3.908103 TGGGGTAGGCTAGATATGAAACC 59.092 47.826 0.00 0.00 0.00 3.27
6385 8094 5.071923 AGTTGGGGTAGGCTAGATATGAAAC 59.928 44.000 0.00 0.00 0.00 2.78
6386 8095 5.224441 AGTTGGGGTAGGCTAGATATGAAA 58.776 41.667 0.00 0.00 0.00 2.69
6387 8096 4.827789 AGTTGGGGTAGGCTAGATATGAA 58.172 43.478 0.00 0.00 0.00 2.57
6388 8097 4.487282 AGTTGGGGTAGGCTAGATATGA 57.513 45.455 0.00 0.00 0.00 2.15
6389 8098 5.568620 AAAGTTGGGGTAGGCTAGATATG 57.431 43.478 0.00 0.00 0.00 1.78
6390 8099 6.592207 AAAAAGTTGGGGTAGGCTAGATAT 57.408 37.500 0.00 0.00 0.00 1.63
6392 8101 4.948062 AAAAAGTTGGGGTAGGCTAGAT 57.052 40.909 0.00 0.00 0.00 1.98
6410 8119 6.651975 TTACGAAGCCTTTAATCCCAAAAA 57.348 33.333 0.00 0.00 0.00 1.94
6411 8120 6.262193 CTTACGAAGCCTTTAATCCCAAAA 57.738 37.500 0.00 0.00 0.00 2.44
6412 8121 5.890424 CTTACGAAGCCTTTAATCCCAAA 57.110 39.130 0.00 0.00 0.00 3.28
6426 8135 1.084370 CGGGCCTCTTGCTTACGAAG 61.084 60.000 0.84 0.00 40.92 3.79
6427 8136 1.079405 CGGGCCTCTTGCTTACGAA 60.079 57.895 0.84 0.00 40.92 3.85
6428 8137 2.577059 CGGGCCTCTTGCTTACGA 59.423 61.111 0.84 0.00 40.92 3.43
6429 8138 2.511600 CCGGGCCTCTTGCTTACG 60.512 66.667 0.84 0.00 40.92 3.18
6430 8139 2.824489 GCCGGGCCTCTTGCTTAC 60.824 66.667 8.12 0.00 40.92 2.34
6431 8140 4.109675 GGCCGGGCCTCTTGCTTA 62.110 66.667 30.86 0.00 46.69 3.09
6441 8150 4.218686 ACAATATGGGGGCCGGGC 62.219 66.667 22.00 22.00 0.00 6.13
6442 8151 2.115266 GACAATATGGGGGCCGGG 59.885 66.667 2.18 0.00 0.00 5.73
6443 8152 2.281484 CGACAATATGGGGGCCGG 60.281 66.667 0.00 0.00 0.00 6.13
6444 8153 1.760479 TACCGACAATATGGGGGCCG 61.760 60.000 0.00 0.00 0.00 6.13
6445 8154 0.475044 TTACCGACAATATGGGGGCC 59.525 55.000 0.00 0.00 0.00 5.80
6446 8155 2.039879 AGATTACCGACAATATGGGGGC 59.960 50.000 0.00 0.00 0.00 5.80
6447 8156 4.367039 AAGATTACCGACAATATGGGGG 57.633 45.455 0.00 0.00 0.00 5.40
6448 8157 5.880332 CCATAAGATTACCGACAATATGGGG 59.120 44.000 0.00 0.00 36.33 4.96
6449 8158 6.594159 GTCCATAAGATTACCGACAATATGGG 59.406 42.308 8.57 0.00 39.05 4.00
6459 8168 4.665833 TGGTCTGTCCATAAGATTACCG 57.334 45.455 0.00 0.00 41.93 4.02
6665 8374 5.507149 CCATTTCACTCTCGTATCTCAGGAG 60.507 48.000 0.00 0.00 39.96 3.69
6715 8424 3.542875 CGTAGATGCGACATTGCTGAAAG 60.543 47.826 0.00 0.00 35.36 2.62
6811 8761 5.429762 ACCAAAGTCATCATCCATAAGAGGA 59.570 40.000 0.00 0.00 40.13 3.71
6891 8841 5.034852 TCAGAAAGAACACACAGATTGGA 57.965 39.130 0.00 0.00 0.00 3.53
6899 8849 6.481644 AGAGAAACAGATCAGAAAGAACACAC 59.518 38.462 0.00 0.00 0.00 3.82
7146 9096 3.982058 CGATATCGCTACTCCCAAAGTTC 59.018 47.826 12.95 0.00 39.55 3.01
7148 9098 3.644884 CGATATCGCTACTCCCAAAGT 57.355 47.619 12.95 0.00 42.33 2.66
7184 9134 3.354948 TGCAGGCATAAAGATGTCAGT 57.645 42.857 0.00 0.00 40.38 3.41
7224 9174 8.918202 AATTAATAAGATATCCAACAGCCGAA 57.082 30.769 0.00 0.00 0.00 4.30
7370 9320 6.038161 CGACAGGGAAAATGCATCATTAACTA 59.962 38.462 0.00 0.00 32.43 2.24
7378 9328 6.348540 GGAATATACGACAGGGAAAATGCATC 60.349 42.308 0.00 0.00 0.00 3.91
7399 9349 1.066858 ACGCTGATGTGAGAACGGAAT 60.067 47.619 0.00 0.00 0.00 3.01
7416 9366 0.729116 AGCATGCACACAAGATACGC 59.271 50.000 21.98 0.00 0.00 4.42
7548 9498 5.131475 AGAGTAACAAGTCACAGGGGTTTAA 59.869 40.000 0.00 0.00 0.00 1.52
7549 9499 4.657039 AGAGTAACAAGTCACAGGGGTTTA 59.343 41.667 0.00 0.00 0.00 2.01
7568 9518 2.360165 CACCAAAGCAAGAAAGCAGAGT 59.640 45.455 0.00 0.00 36.85 3.24
7569 9519 2.288030 CCACCAAAGCAAGAAAGCAGAG 60.288 50.000 0.00 0.00 36.85 3.35
7570 9520 1.682854 CCACCAAAGCAAGAAAGCAGA 59.317 47.619 0.00 0.00 36.85 4.26
7571 9521 1.410153 ACCACCAAAGCAAGAAAGCAG 59.590 47.619 0.00 0.00 36.85 4.24
7642 9593 2.761208 TCGCCAAAAGAAAACCAAGGAA 59.239 40.909 0.00 0.00 0.00 3.36
7643 9594 2.379972 TCGCCAAAAGAAAACCAAGGA 58.620 42.857 0.00 0.00 0.00 3.36
7648 9599 2.217429 TGCTTCGCCAAAAGAAAACC 57.783 45.000 0.00 0.00 0.00 3.27
7649 9600 3.862845 TCTTTGCTTCGCCAAAAGAAAAC 59.137 39.130 0.00 0.00 34.59 2.43
7682 9633 1.858739 TACGGGGAAATTGCCTGCCT 61.859 55.000 12.50 0.00 37.83 4.75
7700 9651 4.744570 CAGGAACGCAAGAGTATCAGTTA 58.255 43.478 0.00 0.00 43.62 2.24
7729 9680 3.260884 TCCTAAACTCACCACCAGACATC 59.739 47.826 0.00 0.00 0.00 3.06
7730 9681 3.008049 GTCCTAAACTCACCACCAGACAT 59.992 47.826 0.00 0.00 0.00 3.06
7851 9802 4.160626 CCCCAAAACACAGTAAAGGACAAA 59.839 41.667 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.