AutoCloner

Multiple sequence alignment - TraesCS7B01G267600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G267600	chr7B	100.000	2812	0	0	1510	4321	490608100	490605289	0.000000e+00	5193.0
1	TraesCS7B01G267600	chr7B	100.000	1158	0	0	1	1158	490609609	490608452	0.000000e+00	2139.0
2	TraesCS7B01G267600	chr7B	79.379	354	30	21	3976	4318	680901147	680901468	4.380000e-50	209.0
3	TraesCS7B01G267600	chr7B	79.387	359	27	28	3976	4321	711427377	711427053	4.380000e-50	209.0
4	TraesCS7B01G267600	chr7D	96.258	2833	82	11	1510	4321	466059355	466056526	0.000000e+00	4623.0
5	TraesCS7B01G267600	chr7D	94.320	1162	41	8	1	1158	466060814	466059674	0.000000e+00	1757.0
6	TraesCS7B01G267600	chr7A	94.434	2066	102	7	1510	3565	533897408	533899470	0.000000e+00	3166.0
7	TraesCS7B01G267600	chr7A	90.506	474	26	8	697	1158	533896817	533897283	3.690000e-170	608.0
8	TraesCS7B01G267600	chr4D	83.363	571	41	31	3762	4321	75269368	75268841	3.020000e-131	479.0
9	TraesCS7B01G267600	chr4A	79.688	576	56	35	3762	4321	582531064	582530534	4.110000e-95	359.0
10	TraesCS7B01G267600	chr4A	79.379	354	30	21	3976	4318	574179398	574179719	4.380000e-50	209.0
11	TraesCS7B01G267600	chr5D	82.540	441	39	16	3866	4292	367401181	367400765	1.910000e-93	353.0
12	TraesCS7B01G267600	chr5D	82.086	441	41	16	3866	4292	367256556	367256140	4.140000e-90	342.0
13	TraesCS7B01G267600	chr5B	79.661	354	29	21	3976	4318	515195646	515195967	9.410000e-52	215.0
14	TraesCS7B01G267600	chr3B	79.661	354	29	21	3976	4318	437811769	437812090	9.410000e-52	215.0
15	TraesCS7B01G267600	chr3B	85.227	176	13	6	3777	3944	299139111	299138941	7.430000e-38	169.0
16	TraesCS7B01G267600	chr1A	79.661	354	29	21	3976	4318	26936673	26936994	9.410000e-52	215.0
17	TraesCS7B01G267600	chr1A	79.942	344	26	22	3986	4318	20438485	20438796	3.380000e-51	213.0
18	TraesCS7B01G267600	chr5A	79.379	354	30	18	3976	4318	46249093	46249414	4.380000e-50	209.0
19	TraesCS7B01G267600	chr2A	79.272	357	31	21	3976	4321	98885424	98885100	4.380000e-50	209.0
20	TraesCS7B01G267600	chr2A	86.420	81	11	0	3762	3842	563166452	563166372	5.950000e-14	89.8
21	TraesCS7B01G267600	chr3A	82.456	228	23	12	3805	4018	387289548	387289324	2.650000e-42	183.0
22	TraesCS7B01G267600	chr2D	84.127	189	20	4	3762	3944	263506966	263506782	1.600000e-39	174.0
23	TraesCS7B01G267600	chr2D	79.888	179	24	8	3815	3981	27262912	27263090	2.110000e-23	121.0
24	TraesCS7B01G267600	chr4B	82.292	192	20	8	3761	3944	22848324	22848139	2.080000e-33	154.0
25	TraesCS7B01G267600	chr2B	78.632	234	27	18	3761	3980	42952173	42952397	2.710000e-27	134.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G267600	chr7B	490605289	490609609	4320	True	3666	5193	100.000	1	4321	2	chr7B.!!$R2	4320
1	TraesCS7B01G267600	chr7D	466056526	466060814	4288	True	3190	4623	95.289	1	4321	2	chr7D.!!$R1	4320
2	TraesCS7B01G267600	chr7A	533896817	533899470	2653	False	1887	3166	92.470	697	3565	2	chr7A.!!$F1	2868
3	TraesCS7B01G267600	chr4D	75268841	75269368	527	True	479	479	83.363	3762	4321	1	chr4D.!!$R1	559
4	TraesCS7B01G267600	chr4A	582530534	582531064	530	True	359	359	79.688	3762	4321	1	chr4A.!!$R1	559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
539	541	0.469331	TGGCGACCCGAGGAGATAAT	60.469	55.000	0.0	0.0	0.00	1.28	F
540	542	1.202964	TGGCGACCCGAGGAGATAATA	60.203	52.381	0.0	0.0	0.00	0.98	F
2396	2411	0.453390	GCAAAGAGGGGAAGATTGCG	59.547	55.000	0.0	0.0	37.27	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2360	2375	0.680618	TGCAAAGGCCATCAACTTGG	59.319	50.0	5.01	0.0	40.13	3.61	R
2435	2450	1.745232	ACAACTCGTTGGCTTTGTCA	58.255	45.0	13.70	0.0	44.45	3.58	R
3769	3809	0.033796	TCTCCGTCCCCGTATCTGTT	60.034	55.0	0.00	0.0	0.00	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	1.153369	TGGATAGCTCTGCGCAACC	60.153	57.895	13.05	2.08	42.61	3.77
31	32	2.050442	CTGCGCAACCGGTTTTCC	60.050	61.111	19.55	8.99	34.32	3.13
32	33	3.551887	CTGCGCAACCGGTTTTCCC	62.552	63.158	19.55	7.09	36.42	3.97
35	36	2.522193	GCAACCGGTTTTCCCCCA	60.522	61.111	19.55	0.00	36.42	4.96
36	37	2.570284	GCAACCGGTTTTCCCCCAG	61.570	63.158	19.55	4.73	36.42	4.45
53	55	2.276201	CCAGTTGATTGCCGATTCGTA	58.724	47.619	5.20	0.00	0.00	3.43
143	145	7.016661	TCTCCAATATCCTTGTCCTTTAGGATC	59.983	40.741	6.90	0.00	45.94	3.36
156	158	5.104360	TCCTTTAGGATCCAGGTGAAATCAG	60.104	44.000	15.82	0.00	39.78	2.90
157	159	4.778213	TTAGGATCCAGGTGAAATCAGG	57.222	45.455	15.82	0.00	0.00	3.86
159	161	1.303309	GATCCAGGTGAAATCAGGCG	58.697	55.000	0.00	0.00	0.00	5.52
167	169	1.886542	GTGAAATCAGGCGGAAAAGGT	59.113	47.619	0.00	0.00	0.00	3.50
179	181	2.727777	GGAAAAGGTTCGTGAAAGTGC	58.272	47.619	0.00	0.00	34.28	4.40
192	194	5.177511	TCGTGAAAGTGCTGAAACTATGAAG	59.822	40.000	0.00	0.00	0.00	3.02
241	243	7.446001	ACAAAAGGAAAAAGTGATGCAAAAA	57.554	28.000	0.00	0.00	0.00	1.94
248	250	5.596836	AAAAGTGATGCAAAAAGGACTCA	57.403	34.783	0.00	0.00	0.00	3.41
281	283	2.219903	GCCGGTTTTTGATTTTTCACCG	59.780	45.455	1.90	1.50	45.46	4.94
282	284	3.449632	CCGGTTTTTGATTTTTCACCGT	58.550	40.909	7.69	0.00	44.60	4.83
292	294	6.344572	TGATTTTTCACCGTCGATAATCTG	57.655	37.500	0.00	0.00	0.00	2.90
316	318	3.547468	CGCAAACAGAGAAACCTTGTTTG	59.453	43.478	19.43	19.43	46.82	2.93
318	320	4.747810	CAAACAGAGAAACCTTGTTTGCT	58.252	39.130	14.05	0.00	41.44	3.91
351	353	6.488683	TGTGTAGGTTTATTCACCTTTGGAAG	59.511	38.462	0.00	0.00	45.76	3.46
375	377	7.066781	AGGAATTAAAACCATATTGACCCGAT	58.933	34.615	4.53	0.00	0.00	4.18
376	378	7.563556	AGGAATTAAAACCATATTGACCCGATT	59.436	33.333	4.53	0.00	0.00	3.34
377	379	7.651704	GGAATTAAAACCATATTGACCCGATTG	59.348	37.037	0.00	0.00	0.00	2.67
378	380	7.889873	ATTAAAACCATATTGACCCGATTGA	57.110	32.000	0.00	0.00	0.00	2.57
379	381	5.835113	AAAACCATATTGACCCGATTGAG	57.165	39.130	0.00	0.00	0.00	3.02
380	382	3.492102	ACCATATTGACCCGATTGAGG	57.508	47.619	0.00	0.00	0.00	3.86
381	383	3.045634	ACCATATTGACCCGATTGAGGA	58.954	45.455	0.00	0.00	0.00	3.71
391	393	1.418334	CGATTGAGGAGGAGATGGGT	58.582	55.000	0.00	0.00	0.00	4.51
404	406	4.589374	AGGAGATGGGTAACTTTCCTATCG	59.411	45.833	5.49	0.00	44.19	2.92
462	464	2.416107	TACCCGTCCACACTCGTCCT	62.416	60.000	0.00	0.00	0.00	3.85
486	488	0.530744	CTCGTACTAGCTGCCACCAA	59.469	55.000	0.00	0.00	0.00	3.67
503	505	4.562757	CCACCAACTTTCCTCTTGTCGATA	60.563	45.833	0.00	0.00	0.00	2.92
539	541	0.469331	TGGCGACCCGAGGAGATAAT	60.469	55.000	0.00	0.00	0.00	1.28
540	542	1.202964	TGGCGACCCGAGGAGATAATA	60.203	52.381	0.00	0.00	0.00	0.98
541	543	1.891150	GGCGACCCGAGGAGATAATAA	59.109	52.381	0.00	0.00	0.00	1.40
548	550	6.183360	CGACCCGAGGAGATAATAACGAATAT	60.183	42.308	0.00	0.00	0.00	1.28
627	629	2.415983	TAGATCCATCCCGACCCATT	57.584	50.000	0.00	0.00	0.00	3.16
653	655	5.723887	ACAACACCATCCTAGAGAGAGATTT	59.276	40.000	0.00	0.00	0.00	2.17
692	694	5.939883	AGGGTTTGTTAACTTTATCCGTACC	59.060	40.000	7.22	0.00	34.59	3.34
768	770	2.910199	TCGAGATGCTTCCCATTTCAG	58.090	47.619	0.00	0.00	35.38	3.02
774	776	3.084536	TGCTTCCCATTTCAGCACATA	57.915	42.857	0.00	0.00	38.65	2.29
841	843	6.331369	TCTTGTTTGAATTGGATCTGAACC	57.669	37.500	0.00	0.00	0.00	3.62
1958	1973	2.550175	TCTCTCATTGATGGGTGTGGA	58.450	47.619	0.00	0.00	0.00	4.02
2396	2411	0.453390	GCAAAGAGGGGAAGATTGCG	59.547	55.000	0.00	0.00	37.27	4.85
2435	2450	0.034670	GGCTGATGGAGAAAGCTGGT	60.035	55.000	0.00	0.00	37.12	4.00
2437	2452	1.339438	GCTGATGGAGAAAGCTGGTGA	60.339	52.381	0.00	0.00	34.05	4.02
2622	2637	2.680339	GTGGATGAGGCTAAGAGTTTGC	59.320	50.000	0.00	0.00	0.00	3.68
2669	2684	9.220767	GGTCTGAAACCCAATAATATCATCTAC	57.779	37.037	0.00	0.00	42.85	2.59
2875	2890	6.959606	AGGATTGGAGCCTAATGTACATAT	57.040	37.500	9.21	2.47	32.92	1.78
2882	2897	8.029782	TGGAGCCTAATGTACATATTTACACT	57.970	34.615	9.21	0.84	34.79	3.55
2933	2948	0.895559	GCTTAACCAAGGCTGTGGCT	60.896	55.000	13.45	6.33	43.00	4.75
3048	3063	2.202395	GCCTTTGCACTCAAGGCCA	61.202	57.895	24.37	0.00	38.96	5.36
3295	3310	3.154827	ACCCTCTTGTACAATTGGTGG	57.845	47.619	17.99	12.72	0.00	4.61
3328	3343	4.010349	GGTTCTGATGGTTAAACCTGAGG	58.990	47.826	0.00	0.00	39.58	3.86
3455	3479	7.254852	CAAAAGCCACTGAACTAAAACACTTA	58.745	34.615	0.00	0.00	0.00	2.24
3578	3614	4.506625	CCAACAGACATAAGGACTCCCAAA	60.507	45.833	0.00	0.00	33.88	3.28
3579	3615	4.993705	ACAGACATAAGGACTCCCAAAA	57.006	40.909	0.00	0.00	33.88	2.44
3610	3646	3.007074	GCTCCATAGGTAAGGTAAGCTCC	59.993	52.174	0.00	0.00	0.00	4.70
3656	3696	8.349245	TGGTATATTATGTGCACATTACTTTGC	58.651	33.333	35.45	19.35	37.76	3.68
3727	3767	9.982651	TCTTGTTTCTACCAATATATGCTAGAC	57.017	33.333	0.00	0.00	28.15	2.59
3729	3769	7.676947	TGTTTCTACCAATATATGCTAGACCC	58.323	38.462	0.00	0.00	28.15	4.46
3752	3792	7.067008	ACCCTATTTGATAAGATTTGTGTTCGG	59.933	37.037	0.00	0.00	0.00	4.30
3769	3809	6.660521	TGTGTTCGGGTAATAGACTAAGAAGA	59.339	38.462	0.00	0.00	0.00	2.87
3822	3862	2.673775	TACGGGGATACGGGATACAA	57.326	50.000	0.00	0.00	38.39	2.41
3844	3885	6.152492	ACAACATTTTCCAAAAACAGCCATTT	59.848	30.769	0.00	0.00	0.00	2.32
4001	4069	1.133761	TCGTAGCCCATGTAGCTCTCT	60.134	52.381	10.51	0.00	41.83	3.10
4018	4090	1.480137	CTCTGTCCACTTAGAGCCCAG	59.520	57.143	0.00	0.00	34.60	4.45
4046	4119	3.817931	GCCCAATTCCAGAAAACCCTAGT	60.818	47.826	0.00	0.00	0.00	2.57
4144	4217	0.959553	AGGAGAAGAAACGACAGCGA	59.040	50.000	0.00	0.00	41.64	4.93
4154	4227	1.218875	ACGACAGCGACGCAAAATCA	61.219	50.000	23.70	0.00	41.64	2.57
4308	4384	1.659954	CTGCTAGCGACCATCGAGC	60.660	63.158	10.77	3.82	43.74	5.03
4313	4389	1.604755	CTAGCGACCATCGAGCTTACT	59.395	52.381	1.69	0.00	43.74	2.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	1.272212	CAATCAACTGGGGGAAAACCG	59.728	52.381	0.00	0.00	41.60	4.44
31	32	0.740737	GAATCGGCAATCAACTGGGG	59.259	55.000	0.00	0.00	0.00	4.96
32	33	0.378257	CGAATCGGCAATCAACTGGG	59.622	55.000	0.00	0.00	0.00	4.45
35	36	2.872245	CCATACGAATCGGCAATCAACT	59.128	45.455	7.80	0.00	0.00	3.16
36	37	2.612212	ACCATACGAATCGGCAATCAAC	59.388	45.455	7.80	0.00	0.00	3.18
53	55	5.362105	TTGGCGAGTTAATAACCTACCAT	57.638	39.130	8.72	0.00	0.00	3.55
117	119	6.209774	TCCTAAAGGACAAGGATATTGGAGA	58.790	40.000	0.00	0.00	39.78	3.71
143	145	0.322456	TTCCGCCTGATTTCACCTGG	60.322	55.000	0.00	0.00	0.00	4.45
156	158	0.664224	TTTCACGAACCTTTTCCGCC	59.336	50.000	0.00	0.00	0.00	6.13
157	159	1.332686	ACTTTCACGAACCTTTTCCGC	59.667	47.619	0.00	0.00	0.00	5.54
159	161	2.357952	AGCACTTTCACGAACCTTTTCC	59.642	45.455	0.00	0.00	0.00	3.13
167	169	5.053811	TCATAGTTTCAGCACTTTCACGAA	58.946	37.500	0.00	0.00	0.00	3.85
241	243	1.754201	GCAAAACCCTTGGTGAGTCCT	60.754	52.381	0.00	0.00	35.34	3.85
248	250	0.978667	AAACCGGCAAAACCCTTGGT	60.979	50.000	0.00	0.00	37.65	3.67
292	294	2.354821	ACAAGGTTTCTCTGTTTGCGAC	59.645	45.455	0.00	0.00	0.00	5.19
302	304	5.891451	ACAAGTAAGCAAACAAGGTTTCTC	58.109	37.500	0.00	0.00	0.00	2.87
316	318	7.801783	GTGAATAAACCTACACAACAAGTAAGC	59.198	37.037	0.00	0.00	34.05	3.09
318	320	8.156994	GGTGAATAAACCTACACAACAAGTAA	57.843	34.615	0.00	0.00	37.24	2.24
351	353	6.702716	TCGGGTCAATATGGTTTTAATTCC	57.297	37.500	0.00	0.00	0.00	3.01
375	377	3.491766	AGTTACCCATCTCCTCCTCAA	57.508	47.619	0.00	0.00	0.00	3.02
376	378	3.491766	AAGTTACCCATCTCCTCCTCA	57.508	47.619	0.00	0.00	0.00	3.86
377	379	3.134985	GGAAAGTTACCCATCTCCTCCTC	59.865	52.174	0.00	0.00	0.00	3.71
378	380	3.116174	GGAAAGTTACCCATCTCCTCCT	58.884	50.000	0.00	0.00	0.00	3.69
379	381	3.116174	AGGAAAGTTACCCATCTCCTCC	58.884	50.000	0.00	0.00	0.00	4.30
380	382	5.279056	CGATAGGAAAGTTACCCATCTCCTC	60.279	48.000	0.00	0.00	35.04	3.71
381	383	4.589374	CGATAGGAAAGTTACCCATCTCCT	59.411	45.833	0.00	0.00	37.14	3.69
404	406	3.836949	TGCGCTTGATGAAATTCCTTTC	58.163	40.909	9.73	0.00	41.01	2.62
516	518	3.234630	CTCCTCGGGTCGCCAACAA	62.235	63.158	0.00	0.00	0.00	2.83
539	541	5.811613	CGGTTTGAGGGTGTTATATTCGTTA	59.188	40.000	0.00	0.00	0.00	3.18
540	542	4.632688	CGGTTTGAGGGTGTTATATTCGTT	59.367	41.667	0.00	0.00	0.00	3.85
541	543	4.186159	CGGTTTGAGGGTGTTATATTCGT	58.814	43.478	0.00	0.00	0.00	3.85
548	550	2.054232	TTTGCGGTTTGAGGGTGTTA	57.946	45.000	0.00	0.00	0.00	2.41
627	629	4.019858	CTCTCTCTAGGATGGTGTTGTCA	58.980	47.826	0.00	0.00	0.00	3.58
653	655	7.648039	AACAAACCCTAACATTACAAGTTGA	57.352	32.000	10.54	0.00	0.00	3.18
768	770	8.028938	GGATACAAATACCATTTCCATATGTGC	58.971	37.037	1.24	0.00	0.00	4.57
1958	1973	1.203001	TCTTCCAACTCCCCGCATTTT	60.203	47.619	0.00	0.00	0.00	1.82
2360	2375	0.680618	TGCAAAGGCCATCAACTTGG	59.319	50.000	5.01	0.00	40.13	3.61
2396	2411	2.683362	CCTAAAAACATCCTCCGCTTCC	59.317	50.000	0.00	0.00	0.00	3.46
2435	2450	1.745232	ACAACTCGTTGGCTTTGTCA	58.255	45.000	13.70	0.00	44.45	3.58
2503	2518	4.756642	TCTCATTCAACAAATCGAGTGCTT	59.243	37.500	0.00	0.00	30.72	3.91
2510	2525	6.426980	TCCTTCATCTCATTCAACAAATCG	57.573	37.500	0.00	0.00	0.00	3.34
2622	2637	9.740239	CAGACCACATTCATCCATTTTATTTAG	57.260	33.333	0.00	0.00	0.00	1.85
2669	2684	5.618056	AGCAAGCATCCATTATATTCGTG	57.382	39.130	0.00	0.00	0.00	4.35
2858	2873	7.095187	GCAGTGTAAATATGTACATTAGGCTCC	60.095	40.741	14.77	0.00	36.42	4.70
2882	2897	7.609960	TCTTGCATAAACCATCAATTAAAGCA	58.390	30.769	0.00	0.00	0.00	3.91
2933	2948	3.640498	TGTCAGCCATTTCATCCAACAAA	59.360	39.130	0.00	0.00	0.00	2.83
3048	3063	6.624423	GTTGCAAACCACTATTGATCATCTT	58.376	36.000	0.00	0.00	42.21	2.40
3295	3310	2.419297	CCATCAGAACCAGGAGCAGTAC	60.419	54.545	0.00	0.00	0.00	2.73
3328	3343	5.086104	TCCTACCTGTTTACAAGCAGATC	57.914	43.478	7.32	0.00	39.29	2.75
3578	3614	6.897413	ACCTTACCTATGGAGCATTTCAAATT	59.103	34.615	0.00	0.00	0.00	1.82
3579	3615	6.435164	ACCTTACCTATGGAGCATTTCAAAT	58.565	36.000	0.00	0.00	0.00	2.32
3610	3646	6.029346	ACCAGAAAGGAAGCAATATGTTTG	57.971	37.500	0.00	0.00	41.22	2.93
3639	3675	3.318839	ACACAGCAAAGTAATGTGCACAT	59.681	39.130	26.61	26.61	46.49	3.21
3656	3696	3.256631	AGGCTAAGGAAAAATGCACACAG	59.743	43.478	0.00	0.00	0.00	3.66
3727	3767	7.417612	CCGAACACAAATCTTATCAAATAGGG	58.582	38.462	0.00	0.00	0.00	3.53
3729	3769	7.985476	ACCCGAACACAAATCTTATCAAATAG	58.015	34.615	0.00	0.00	0.00	1.73
3752	3792	9.881529	CGTATCTGTTCTTCTTAGTCTATTACC	57.118	37.037	0.00	0.00	0.00	2.85
3769	3809	0.033796	TCTCCGTCCCCGTATCTGTT	60.034	55.000	0.00	0.00	0.00	3.16
3789	3829	0.512518	CCCGTATGCGTATCGTCGTA	59.487	55.000	1.69	0.00	36.15	3.43
3822	3862	6.134040	CAAATGGCTGTTTTTGGAAAATGT	57.866	33.333	0.00	0.00	30.85	2.71
3844	3885	0.488220	TATACCCTGCCGTATCCCCA	59.512	55.000	0.00	0.00	31.42	4.96
4001	4069	0.178903	ACCTGGGCTCTAAGTGGACA	60.179	55.000	0.00	0.00	0.00	4.02
4018	4090	2.525105	TTCTGGAATTGGGCCTTACC	57.475	50.000	4.53	3.86	37.93	2.85
4046	4119	2.611292	GGAACGACTAGAGCGCTACTAA	59.389	50.000	11.50	0.00	0.00	2.24
4118	4191	2.990514	GTCGTTTCTTCTCCTCTCTTGC	59.009	50.000	0.00	0.00	0.00	4.01
4144	4217	0.242017	GGAAGCTGCTGATTTTGCGT	59.758	50.000	1.35	0.00	0.00	5.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.