Multiple sequence alignment - TraesCS7B01G266400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G266400 chr7B 100.000 3439 0 0 1 3439 489142824 489139386 0.000000e+00 6351.0
1 TraesCS7B01G266400 chr7B 95.000 120 5 1 3185 3303 489139527 489139408 1.630000e-43 187.0
2 TraesCS7B01G266400 chr7B 95.000 120 5 1 3298 3417 489139640 489139522 1.630000e-43 187.0
3 TraesCS7B01G266400 chr7B 98.058 103 2 0 2490 2592 421056970 421056868 2.730000e-41 180.0
4 TraesCS7B01G266400 chr7A 94.059 1195 35 7 380 1546 535908540 535909726 0.000000e+00 1781.0
5 TraesCS7B01G266400 chr7A 98.033 966 16 3 1530 2494 535909770 535910733 0.000000e+00 1676.0
6 TraesCS7B01G266400 chr7A 96.655 867 12 2 2588 3439 535910732 535911596 0.000000e+00 1424.0
7 TraesCS7B01G266400 chr7A 88.922 334 13 7 3 312 535907707 535908040 1.160000e-104 390.0
8 TraesCS7B01G266400 chr7A 95.000 120 5 1 3185 3303 535911455 535911574 1.630000e-43 187.0
9 TraesCS7B01G266400 chr7A 94.167 120 6 1 3298 3417 535911342 535911460 7.580000e-42 182.0
10 TraesCS7B01G266400 chr6B 99.029 103 1 0 2489 2591 718346913 718346811 5.860000e-43 185.0
11 TraesCS7B01G266400 chr2B 99.020 102 1 0 2491 2592 397939372 397939473 2.110000e-42 183.0
12 TraesCS7B01G266400 chr2B 97.248 109 2 1 2491 2599 425527654 425527761 2.110000e-42 183.0
13 TraesCS7B01G266400 chr3B 99.010 101 1 0 2490 2590 560117400 560117300 7.580000e-42 182.0
14 TraesCS7B01G266400 chr1B 97.170 106 3 0 2491 2596 415223382 415223277 2.730000e-41 180.0
15 TraesCS7B01G266400 chr5B 94.737 114 5 1 2492 2604 455737504 455737617 3.530000e-40 176.0
16 TraesCS7B01G266400 chr5B 95.495 111 3 2 2493 2603 551504400 551504292 3.530000e-40 176.0
17 TraesCS7B01G266400 chr4A 92.623 122 8 1 2490 2610 69316925 69316804 1.270000e-39 174.0
18 TraesCS7B01G266400 chr7D 80.180 111 21 1 2167 2277 632653423 632653314 7.910000e-12 82.4
19 TraesCS7B01G266400 chr2A 78.125 128 23 4 1971 2094 771974263 771974137 3.680000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G266400 chr7B 489139386 489142824 3438 True 2241.666667 6351 96.666667 1 3439 3 chr7B.!!$R2 3438
1 TraesCS7B01G266400 chr7A 535907707 535911596 3889 False 940.000000 1781 94.472667 3 3439 6 chr7A.!!$F1 3436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 390 0.029834 CCATTGCAGCTAATCCACGC 59.970 55.0 0.00 0.00 0.0 5.34 F
373 398 0.373716 GCTAATCCACGCTTTCCACG 59.626 55.0 0.00 0.00 0.0 4.94 F
1086 1570 0.526662 ACTTCTCGCGAGTACTTGGG 59.473 55.0 33.33 18.87 0.0 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1657 2202 0.038744 CACTGCAGGTCCCCTCAATT 59.961 55.000 19.93 0.0 0.0 2.32 R
1694 2239 0.107654 ATAGGCCCGTCAGTTTGCTC 60.108 55.000 0.00 0.0 0.0 4.26 R
2573 3119 1.572415 AGTAATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.0 0.0 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.401342 ACCACCCTAGGGAAAAATCTTGT 59.599 43.478 35.38 9.02 38.96 3.16
61 62 4.013728 TCTTGTCTCTGCCTCTTCTCTAC 58.986 47.826 0.00 0.00 0.00 2.59
139 141 3.848554 GCAAGTAAACCGCAACAGTTCTC 60.849 47.826 0.00 0.00 0.00 2.87
156 158 5.525378 CAGTTCTCTAGGTTCCACAATATGC 59.475 44.000 0.00 0.00 0.00 3.14
186 189 5.063204 AGTGTAGCACAGTGATAGCAAAAA 58.937 37.500 4.15 0.00 36.74 1.94
214 217 3.985279 TCTGAACGAGTATTGTTTGACCG 59.015 43.478 0.00 0.00 44.35 4.79
215 218 2.477375 TGAACGAGTATTGTTTGACCGC 59.523 45.455 0.00 0.00 44.35 5.68
289 314 0.612732 ACGTGATCGGGTTCCCTACA 60.613 55.000 6.31 1.15 41.85 2.74
312 337 2.760092 GTTCTCTGCTCTGATCTCCAGT 59.240 50.000 0.00 0.00 43.38 4.00
313 338 3.098774 TCTCTGCTCTGATCTCCAGTT 57.901 47.619 0.00 0.00 43.38 3.16
315 340 4.604156 TCTCTGCTCTGATCTCCAGTTAA 58.396 43.478 0.00 0.00 43.38 2.01
316 341 4.400884 TCTCTGCTCTGATCTCCAGTTAAC 59.599 45.833 0.00 0.00 43.38 2.01
318 343 2.197577 GCTCTGATCTCCAGTTAACGC 58.802 52.381 0.00 0.00 43.38 4.84
320 345 3.443037 CTCTGATCTCCAGTTAACGCTG 58.557 50.000 0.00 0.00 43.38 5.18
322 347 3.119459 TCTGATCTCCAGTTAACGCTGTC 60.119 47.826 0.00 0.00 43.38 3.51
323 348 2.826128 TGATCTCCAGTTAACGCTGTCT 59.174 45.455 0.00 0.00 34.84 3.41
325 350 2.515854 TCTCCAGTTAACGCTGTCTCT 58.484 47.619 0.00 0.00 34.84 3.10
328 353 2.626266 TCCAGTTAACGCTGTCTCTTCA 59.374 45.455 0.00 0.00 34.84 3.02
329 354 2.731976 CCAGTTAACGCTGTCTCTTCAC 59.268 50.000 0.00 0.00 34.84 3.18
330 355 2.731976 CAGTTAACGCTGTCTCTTCACC 59.268 50.000 0.00 0.00 0.00 4.02
331 356 2.628657 AGTTAACGCTGTCTCTTCACCT 59.371 45.455 0.00 0.00 0.00 4.00
332 357 2.987821 GTTAACGCTGTCTCTTCACCTC 59.012 50.000 0.00 0.00 0.00 3.85
333 358 1.333177 AACGCTGTCTCTTCACCTCT 58.667 50.000 0.00 0.00 0.00 3.69
334 359 1.333177 ACGCTGTCTCTTCACCTCTT 58.667 50.000 0.00 0.00 0.00 2.85
335 360 1.689273 ACGCTGTCTCTTCACCTCTTT 59.311 47.619 0.00 0.00 0.00 2.52
336 361 2.288518 ACGCTGTCTCTTCACCTCTTTC 60.289 50.000 0.00 0.00 0.00 2.62
337 362 2.288457 CGCTGTCTCTTCACCTCTTTCA 60.288 50.000 0.00 0.00 0.00 2.69
338 363 3.324993 GCTGTCTCTTCACCTCTTTCAG 58.675 50.000 0.00 0.00 0.00 3.02
339 364 3.006323 GCTGTCTCTTCACCTCTTTCAGA 59.994 47.826 0.00 0.00 0.00 3.27
340 365 4.322650 GCTGTCTCTTCACCTCTTTCAGAT 60.323 45.833 0.00 0.00 0.00 2.90
341 366 5.792741 CTGTCTCTTCACCTCTTTCAGATT 58.207 41.667 0.00 0.00 0.00 2.40
342 367 6.573289 GCTGTCTCTTCACCTCTTTCAGATTA 60.573 42.308 0.00 0.00 0.00 1.75
343 368 6.929625 TGTCTCTTCACCTCTTTCAGATTAG 58.070 40.000 0.00 0.00 0.00 1.73
344 369 6.495181 TGTCTCTTCACCTCTTTCAGATTAGT 59.505 38.462 0.00 0.00 0.00 2.24
345 370 7.015682 TGTCTCTTCACCTCTTTCAGATTAGTT 59.984 37.037 0.00 0.00 0.00 2.24
346 371 7.544217 GTCTCTTCACCTCTTTCAGATTAGTTC 59.456 40.741 0.00 0.00 0.00 3.01
347 372 6.702329 TCTTCACCTCTTTCAGATTAGTTCC 58.298 40.000 0.00 0.00 0.00 3.62
348 373 6.270000 TCTTCACCTCTTTCAGATTAGTTCCA 59.730 38.462 0.00 0.00 0.00 3.53
349 374 6.627087 TCACCTCTTTCAGATTAGTTCCAT 57.373 37.500 0.00 0.00 0.00 3.41
350 375 7.020827 TCACCTCTTTCAGATTAGTTCCATT 57.979 36.000 0.00 0.00 0.00 3.16
351 376 6.881065 TCACCTCTTTCAGATTAGTTCCATTG 59.119 38.462 0.00 0.00 0.00 2.82
352 377 5.649831 ACCTCTTTCAGATTAGTTCCATTGC 59.350 40.000 0.00 0.00 0.00 3.56
353 378 5.649395 CCTCTTTCAGATTAGTTCCATTGCA 59.351 40.000 0.00 0.00 0.00 4.08
354 379 6.183360 CCTCTTTCAGATTAGTTCCATTGCAG 60.183 42.308 0.00 0.00 0.00 4.41
355 380 4.970662 TTCAGATTAGTTCCATTGCAGC 57.029 40.909 0.00 0.00 0.00 5.25
356 381 4.226427 TCAGATTAGTTCCATTGCAGCT 57.774 40.909 0.00 0.00 0.00 4.24
357 382 5.357742 TCAGATTAGTTCCATTGCAGCTA 57.642 39.130 0.00 0.00 0.00 3.32
358 383 5.744171 TCAGATTAGTTCCATTGCAGCTAA 58.256 37.500 0.00 0.00 0.00 3.09
359 384 6.359804 TCAGATTAGTTCCATTGCAGCTAAT 58.640 36.000 0.00 0.00 35.74 1.73
360 385 6.484643 TCAGATTAGTTCCATTGCAGCTAATC 59.515 38.462 13.46 13.46 43.75 1.75
361 386 5.767168 AGATTAGTTCCATTGCAGCTAATCC 59.233 40.000 16.26 4.19 44.13 3.01
362 387 3.370840 AGTTCCATTGCAGCTAATCCA 57.629 42.857 0.00 0.00 0.00 3.41
363 388 3.019564 AGTTCCATTGCAGCTAATCCAC 58.980 45.455 0.00 0.00 0.00 4.02
364 389 1.667236 TCCATTGCAGCTAATCCACG 58.333 50.000 0.00 0.00 0.00 4.94
365 390 0.029834 CCATTGCAGCTAATCCACGC 59.970 55.000 0.00 0.00 0.00 5.34
366 391 1.019673 CATTGCAGCTAATCCACGCT 58.980 50.000 0.00 0.00 36.83 5.07
367 392 1.402968 CATTGCAGCTAATCCACGCTT 59.597 47.619 0.00 0.00 33.45 4.68
368 393 1.533625 TTGCAGCTAATCCACGCTTT 58.466 45.000 0.00 0.00 33.45 3.51
369 394 1.086696 TGCAGCTAATCCACGCTTTC 58.913 50.000 0.00 0.00 33.45 2.62
370 395 0.378610 GCAGCTAATCCACGCTTTCC 59.621 55.000 0.00 0.00 33.45 3.13
371 396 1.737838 CAGCTAATCCACGCTTTCCA 58.262 50.000 0.00 0.00 33.45 3.53
372 397 1.398390 CAGCTAATCCACGCTTTCCAC 59.602 52.381 0.00 0.00 33.45 4.02
373 398 0.373716 GCTAATCCACGCTTTCCACG 59.626 55.000 0.00 0.00 0.00 4.94
374 399 2.004583 CTAATCCACGCTTTCCACGA 57.995 50.000 0.00 0.00 0.00 4.35
375 400 2.550978 CTAATCCACGCTTTCCACGAT 58.449 47.619 0.00 0.00 0.00 3.73
376 401 1.369625 AATCCACGCTTTCCACGATC 58.630 50.000 0.00 0.00 0.00 3.69
377 402 0.806102 ATCCACGCTTTCCACGATCG 60.806 55.000 14.88 14.88 0.00 3.69
378 403 2.452813 CCACGCTTTCCACGATCGG 61.453 63.158 20.98 8.32 0.00 4.18
382 839 0.874175 CGCTTTCCACGATCGGCATA 60.874 55.000 20.98 0.00 0.00 3.14
400 857 2.057137 TATCTGGAAACATGCAGGGC 57.943 50.000 2.31 0.00 41.51 5.19
439 896 7.309867 GGTTGTAATCTCTTCTCTACTTCACCA 60.310 40.741 0.00 0.00 0.00 4.17
517 974 5.830000 TCTCATTTGCATCCTTCAGAATG 57.170 39.130 0.00 0.00 37.54 2.67
586 1069 6.475504 TGTTATCAGTTCATCACCATTCACT 58.524 36.000 0.00 0.00 0.00 3.41
596 1079 8.821894 GTTCATCACCATTCACTATCTTTAGTC 58.178 37.037 0.00 0.00 36.50 2.59
692 1176 7.967890 AAAAACCATGCCTTCAAATTTCTAG 57.032 32.000 0.00 0.00 0.00 2.43
732 1216 1.134367 CCAGATTCAGCTTGCATGGTG 59.866 52.381 22.01 22.01 36.85 4.17
743 1227 4.080919 AGCTTGCATGGTGTCTTACTATCA 60.081 41.667 3.17 0.00 0.00 2.15
758 1242 7.708752 GTCTTACTATCAGATTTGCAAGCTACT 59.291 37.037 0.00 0.00 0.00 2.57
759 1243 8.914011 TCTTACTATCAGATTTGCAAGCTACTA 58.086 33.333 0.00 0.00 0.00 1.82
761 1245 5.988561 ACTATCAGATTTGCAAGCTACTAGC 59.011 40.000 0.00 0.00 42.84 3.42
794 1278 7.918076 TCATTAGTCATCTGGGAAGTAGTTTT 58.082 34.615 0.00 0.00 0.00 2.43
922 1406 3.253371 GTTGCGGACCATGAATTATCG 57.747 47.619 0.00 0.00 0.00 2.92
943 1427 4.921834 GCACTGTGCCCTCTAGTC 57.078 61.111 21.78 0.00 37.42 2.59
954 1438 2.485657 GCCCTCTAGTCAATACAAGCCC 60.486 54.545 0.00 0.00 0.00 5.19
961 1445 1.539827 GTCAATACAAGCCCGTTTGCT 59.460 47.619 0.00 0.00 45.43 3.91
996 1480 4.687483 CACTGTTTGGGCATTCTGAAAATC 59.313 41.667 0.00 0.00 0.00 2.17
1002 1486 5.333299 TGGGCATTCTGAAAATCAAGATG 57.667 39.130 0.00 0.00 0.00 2.90
1013 1497 5.416639 TGAAAATCAAGATGGATGGTGACTG 59.583 40.000 0.00 0.00 0.00 3.51
1023 1507 2.955660 GGATGGTGACTGTGGTTCAAAA 59.044 45.455 0.00 0.00 0.00 2.44
1086 1570 0.526662 ACTTCTCGCGAGTACTTGGG 59.473 55.000 33.33 18.87 0.00 4.12
1140 1624 9.278734 GTGAGCTTATAGTTTTGCTGAAATTAC 57.721 33.333 0.00 0.00 35.76 1.89
1190 1675 4.584327 AACAACATAACTTCAACAGGGC 57.416 40.909 0.00 0.00 0.00 5.19
1244 1729 3.960102 AGAAGCTTTTGAACCCAATGTCA 59.040 39.130 0.00 0.00 31.46 3.58
1463 1948 5.248477 AGGTACAGTAATTGTGTGATGTCCT 59.752 40.000 5.72 0.00 41.10 3.85
1657 2202 2.495084 TGGCACACACGCTACAAAATA 58.505 42.857 0.00 0.00 0.00 1.40
1694 2239 3.739300 CAGTGGTTTACAGTACCTTCACG 59.261 47.826 0.00 0.00 36.60 4.35
1723 2268 3.035363 TGACGGGCCTATCATTCACTTA 58.965 45.455 0.84 0.00 0.00 2.24
1837 2382 4.755123 ACTGTGTGCACTATGGAAGTTAAC 59.245 41.667 19.41 3.46 35.76 2.01
1975 2520 6.544650 AGGTATACTCGGAACTATGTCAGAT 58.455 40.000 2.25 0.00 0.00 2.90
2006 2551 5.131142 AGTCTGGGTGTAATAATCTTGGAGG 59.869 44.000 0.00 0.00 0.00 4.30
2208 2754 4.832248 TGAAAAATGGAGAGATACGCTGT 58.168 39.130 0.00 0.00 0.00 4.40
2239 2785 5.244178 CACCAGGGTATACATCCTTAGAGAC 59.756 48.000 5.01 0.00 0.00 3.36
2367 2913 2.948115 TGGGAGGTATGGATTGCAATG 58.052 47.619 18.59 0.00 0.00 2.82
2410 2956 0.035056 GCAGCCCAGGTACAATCACT 60.035 55.000 0.00 0.00 0.00 3.41
2417 2963 2.346803 CAGGTACAATCACTTGACCGG 58.653 52.381 0.00 0.00 37.50 5.28
2418 2964 1.084289 GGTACAATCACTTGACCGGC 58.916 55.000 0.00 0.00 36.20 6.13
2457 3003 7.416817 TGCCTAAAAGTTTAAAACGTTACTCC 58.583 34.615 0.00 0.00 32.79 3.85
2498 3044 5.615925 CCCAGTATTAGGCATATACTCCC 57.384 47.826 8.14 0.00 36.84 4.30
2499 3045 5.281314 CCCAGTATTAGGCATATACTCCCT 58.719 45.833 8.14 0.00 36.84 4.20
2500 3046 5.364157 CCCAGTATTAGGCATATACTCCCTC 59.636 48.000 8.14 0.00 36.84 4.30
2501 3047 5.364157 CCAGTATTAGGCATATACTCCCTCC 59.636 48.000 8.14 0.00 36.84 4.30
2502 3048 5.067936 CAGTATTAGGCATATACTCCCTCCG 59.932 48.000 8.14 0.00 36.84 4.63
2503 3049 3.537795 TTAGGCATATACTCCCTCCGT 57.462 47.619 0.00 0.00 0.00 4.69
2504 3050 1.926108 AGGCATATACTCCCTCCGTC 58.074 55.000 0.00 0.00 0.00 4.79
2505 3051 0.896226 GGCATATACTCCCTCCGTCC 59.104 60.000 0.00 0.00 0.00 4.79
2506 3052 0.896226 GCATATACTCCCTCCGTCCC 59.104 60.000 0.00 0.00 0.00 4.46
2507 3053 1.826042 GCATATACTCCCTCCGTCCCA 60.826 57.143 0.00 0.00 0.00 4.37
2508 3054 2.605257 CATATACTCCCTCCGTCCCAA 58.395 52.381 0.00 0.00 0.00 4.12
2509 3055 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2510 3056 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2511 3057 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2512 3058 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2513 3059 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2514 3060 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2515 3061 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2516 3062 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2517 3063 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2518 3064 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2519 3065 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2520 3066 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2521 3067 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2522 3068 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2523 3069 4.154195 CCGTCCCAAAATAAGTGTCTTGAG 59.846 45.833 0.00 0.00 0.00 3.02
2524 3070 4.378459 CGTCCCAAAATAAGTGTCTTGAGC 60.378 45.833 0.00 0.00 0.00 4.26
2525 3071 4.762251 GTCCCAAAATAAGTGTCTTGAGCT 59.238 41.667 0.00 0.00 0.00 4.09
2526 3072 5.241728 GTCCCAAAATAAGTGTCTTGAGCTT 59.758 40.000 0.00 0.00 0.00 3.74
2527 3073 6.430000 GTCCCAAAATAAGTGTCTTGAGCTTA 59.570 38.462 0.00 0.00 0.00 3.09
2528 3074 6.655003 TCCCAAAATAAGTGTCTTGAGCTTAG 59.345 38.462 0.00 0.00 0.00 2.18
2529 3075 6.431234 CCCAAAATAAGTGTCTTGAGCTTAGT 59.569 38.462 0.00 0.00 0.00 2.24
2530 3076 7.606456 CCCAAAATAAGTGTCTTGAGCTTAGTA 59.394 37.037 0.00 0.00 0.00 1.82
2531 3077 8.443937 CCAAAATAAGTGTCTTGAGCTTAGTAC 58.556 37.037 0.00 0.00 0.00 2.73
2532 3078 8.988934 CAAAATAAGTGTCTTGAGCTTAGTACA 58.011 33.333 0.00 0.00 0.00 2.90
2533 3079 9.555727 AAAATAAGTGTCTTGAGCTTAGTACAA 57.444 29.630 0.00 0.00 0.00 2.41
2534 3080 9.555727 AAATAAGTGTCTTGAGCTTAGTACAAA 57.444 29.630 0.00 0.00 0.00 2.83
2535 3081 9.726438 AATAAGTGTCTTGAGCTTAGTACAAAT 57.274 29.630 0.00 0.00 0.00 2.32
2536 3082 9.726438 ATAAGTGTCTTGAGCTTAGTACAAATT 57.274 29.630 0.00 0.00 0.00 1.82
2537 3083 8.451908 AAGTGTCTTGAGCTTAGTACAAATTT 57.548 30.769 0.00 0.00 0.00 1.82
2538 3084 7.865707 AGTGTCTTGAGCTTAGTACAAATTTG 58.134 34.615 16.67 16.67 0.00 2.32
2539 3085 7.499232 AGTGTCTTGAGCTTAGTACAAATTTGT 59.501 33.333 25.99 25.99 44.86 2.83
2540 3086 8.770828 GTGTCTTGAGCTTAGTACAAATTTGTA 58.229 33.333 23.91 23.91 42.35 2.41
2561 3107 7.046292 TGTACTAGAGCTTGTACAAAGTTGA 57.954 36.000 18.06 1.18 44.39 3.18
2562 3108 7.145985 TGTACTAGAGCTTGTACAAAGTTGAG 58.854 38.462 18.06 9.23 44.39 3.02
2563 3109 6.406692 ACTAGAGCTTGTACAAAGTTGAGA 57.593 37.500 10.03 0.00 0.00 3.27
2564 3110 6.217294 ACTAGAGCTTGTACAAAGTTGAGAC 58.783 40.000 10.03 0.00 0.00 3.36
2565 3111 5.023533 AGAGCTTGTACAAAGTTGAGACA 57.976 39.130 10.03 0.00 0.00 3.41
2566 3112 4.811557 AGAGCTTGTACAAAGTTGAGACAC 59.188 41.667 10.03 0.00 31.08 3.67
2567 3113 4.770795 AGCTTGTACAAAGTTGAGACACT 58.229 39.130 10.03 0.00 31.08 3.55
2568 3114 5.186198 AGCTTGTACAAAGTTGAGACACTT 58.814 37.500 10.03 0.00 38.74 3.16
2569 3115 6.346096 AGCTTGTACAAAGTTGAGACACTTA 58.654 36.000 10.03 0.00 35.87 2.24
2570 3116 6.992715 AGCTTGTACAAAGTTGAGACACTTAT 59.007 34.615 10.03 0.00 35.87 1.73
2571 3117 7.499232 AGCTTGTACAAAGTTGAGACACTTATT 59.501 33.333 10.03 0.00 35.87 1.40
2572 3118 8.129211 GCTTGTACAAAGTTGAGACACTTATTT 58.871 33.333 10.03 0.00 35.87 1.40
2574 3120 9.781834 TTGTACAAAGTTGAGACACTTATTTTG 57.218 29.630 5.64 0.00 35.87 2.44
2575 3121 8.402472 TGTACAAAGTTGAGACACTTATTTTGG 58.598 33.333 0.00 0.00 35.87 3.28
2576 3122 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2577 3123 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2578 3124 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2579 3125 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2580 3126 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2581 3127 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2582 3128 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2583 3129 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2584 3130 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2585 3131 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2586 3132 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2587 3133 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2588 3134 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2607 3153 7.548075 AGGGAGTATTACTTTTTGTATGTGTCG 59.452 37.037 0.00 0.00 0.00 4.35
2666 3212 2.023501 AGAGAGCCCAGAAGAGTGGTAT 60.024 50.000 0.00 0.00 35.60 2.73
2667 3213 3.205507 AGAGAGCCCAGAAGAGTGGTATA 59.794 47.826 0.00 0.00 35.60 1.47
2855 3401 8.480643 AGTGGTCTAATTAATCTCTTCAAACG 57.519 34.615 0.00 0.00 0.00 3.60
3061 3607 2.725637 TCATTTTAAGGTTACGGGGGC 58.274 47.619 0.00 0.00 0.00 5.80
3180 3741 6.263344 CAGTGCAATGATCAATTCCTTGTAG 58.737 40.000 8.85 0.00 33.79 2.74
3287 3848 4.022676 CACAAGGTAAAGTTGGCGGTTATT 60.023 41.667 0.00 0.00 0.00 1.40
3305 3866 1.170442 TTCATGTGCCTGCAGTCATG 58.830 50.000 24.77 24.77 38.96 3.07
3312 3873 1.077930 CCTGCAGTCATGGTGAGGG 60.078 63.158 13.81 0.00 0.00 4.30
3347 3908 2.964209 TCTAAGCCTATCCCTGGACAG 58.036 52.381 0.00 0.00 0.00 3.51
3407 3968 5.354792 GGTAAAGTTGCCGGTTATTCATGTA 59.645 40.000 1.90 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.591877 GGTCATGCTTAGTCTTTGATGGAAT 59.408 40.000 0.00 0.00 0.00 3.01
1 2 4.943705 GGTCATGCTTAGTCTTTGATGGAA 59.056 41.667 0.00 0.00 0.00 3.53
9 10 2.269940 AGGGTGGTCATGCTTAGTCTT 58.730 47.619 0.00 0.00 0.00 3.01
16 17 0.253160 TTCCCTAGGGTGGTCATGCT 60.253 55.000 27.58 0.00 36.47 3.79
19 20 3.858638 AGATTTTTCCCTAGGGTGGTCAT 59.141 43.478 27.58 13.83 36.47 3.06
44 45 2.027100 TCACGTAGAGAAGAGGCAGAGA 60.027 50.000 0.00 0.00 0.00 3.10
61 62 1.875514 CTGCATATGGGACCAATCACG 59.124 52.381 4.56 0.00 0.00 4.35
139 141 2.880890 GGCAGCATATTGTGGAACCTAG 59.119 50.000 0.00 0.00 34.36 3.02
156 158 0.898320 ACTGTGCTACACTAGGGCAG 59.102 55.000 0.00 0.00 36.62 4.85
186 189 9.233232 GTCAAACAATACTCGTTCAGAATTTTT 57.767 29.630 0.00 0.00 0.00 1.94
189 192 6.347402 CGGTCAAACAATACTCGTTCAGAATT 60.347 38.462 0.00 0.00 0.00 2.17
191 194 4.446385 CGGTCAAACAATACTCGTTCAGAA 59.554 41.667 0.00 0.00 0.00 3.02
195 198 2.477375 TGCGGTCAAACAATACTCGTTC 59.523 45.455 0.00 0.00 0.00 3.95
214 217 2.023741 CAATGATGACCGCGCTGC 59.976 61.111 5.56 0.00 0.00 5.25
215 218 0.168788 AAACAATGATGACCGCGCTG 59.831 50.000 5.56 0.00 0.00 5.18
222 229 7.944729 AGCCCCATATATAAACAATGATGAC 57.055 36.000 0.00 0.00 0.00 3.06
289 314 3.372897 TGGAGATCAGAGCAGAGAACAT 58.627 45.455 0.00 0.00 0.00 2.71
312 337 2.891580 AGAGGTGAAGAGACAGCGTTAA 59.108 45.455 0.00 0.00 42.15 2.01
313 338 2.515854 AGAGGTGAAGAGACAGCGTTA 58.484 47.619 0.00 0.00 42.15 3.18
315 340 1.333177 AAGAGGTGAAGAGACAGCGT 58.667 50.000 0.00 0.00 42.15 5.07
316 341 2.288457 TGAAAGAGGTGAAGAGACAGCG 60.288 50.000 0.00 0.00 42.15 5.18
318 343 4.862902 TCTGAAAGAGGTGAAGAGACAG 57.137 45.455 0.00 0.00 38.67 3.51
332 357 5.125097 AGCTGCAATGGAACTAATCTGAAAG 59.875 40.000 1.02 0.00 0.00 2.62
333 358 5.012239 AGCTGCAATGGAACTAATCTGAAA 58.988 37.500 1.02 0.00 0.00 2.69
334 359 4.592942 AGCTGCAATGGAACTAATCTGAA 58.407 39.130 1.02 0.00 0.00 3.02
335 360 4.226427 AGCTGCAATGGAACTAATCTGA 57.774 40.909 1.02 0.00 0.00 3.27
336 361 6.293845 GGATTAGCTGCAATGGAACTAATCTG 60.294 42.308 25.83 0.00 0.00 2.90
337 362 5.767168 GGATTAGCTGCAATGGAACTAATCT 59.233 40.000 25.83 4.83 0.00 2.40
338 363 5.532406 TGGATTAGCTGCAATGGAACTAATC 59.468 40.000 21.78 21.78 0.00 1.75
339 364 5.300286 GTGGATTAGCTGCAATGGAACTAAT 59.700 40.000 9.62 9.62 0.00 1.73
340 365 4.640201 GTGGATTAGCTGCAATGGAACTAA 59.360 41.667 1.02 0.34 0.00 2.24
341 366 4.199310 GTGGATTAGCTGCAATGGAACTA 58.801 43.478 1.02 0.00 0.00 2.24
342 367 3.019564 GTGGATTAGCTGCAATGGAACT 58.980 45.455 1.02 0.00 0.00 3.01
343 368 2.223340 CGTGGATTAGCTGCAATGGAAC 60.223 50.000 1.02 0.00 0.00 3.62
344 369 2.016318 CGTGGATTAGCTGCAATGGAA 58.984 47.619 1.02 0.00 0.00 3.53
345 370 1.667236 CGTGGATTAGCTGCAATGGA 58.333 50.000 1.02 0.00 0.00 3.41
346 371 0.029834 GCGTGGATTAGCTGCAATGG 59.970 55.000 1.02 0.00 0.00 3.16
347 372 1.019673 AGCGTGGATTAGCTGCAATG 58.980 50.000 1.02 0.00 42.82 2.82
348 373 1.755179 AAGCGTGGATTAGCTGCAAT 58.245 45.000 1.02 0.00 43.78 3.56
349 374 1.468520 GAAAGCGTGGATTAGCTGCAA 59.531 47.619 1.02 0.00 43.78 4.08
350 375 1.086696 GAAAGCGTGGATTAGCTGCA 58.913 50.000 1.02 0.00 43.78 4.41
351 376 0.378610 GGAAAGCGTGGATTAGCTGC 59.621 55.000 0.00 0.00 43.78 5.25
352 377 1.398390 GTGGAAAGCGTGGATTAGCTG 59.602 52.381 0.00 0.00 43.78 4.24
353 378 1.739067 GTGGAAAGCGTGGATTAGCT 58.261 50.000 0.00 0.00 46.97 3.32
354 379 0.373716 CGTGGAAAGCGTGGATTAGC 59.626 55.000 0.00 0.00 0.00 3.09
355 380 2.004583 TCGTGGAAAGCGTGGATTAG 57.995 50.000 0.00 0.00 0.00 1.73
356 381 2.546778 GATCGTGGAAAGCGTGGATTA 58.453 47.619 0.00 0.00 0.00 1.75
357 382 1.369625 GATCGTGGAAAGCGTGGATT 58.630 50.000 0.00 0.00 0.00 3.01
358 383 0.806102 CGATCGTGGAAAGCGTGGAT 60.806 55.000 7.03 0.00 0.00 3.41
359 384 1.445410 CGATCGTGGAAAGCGTGGA 60.445 57.895 7.03 0.00 0.00 4.02
360 385 2.452813 CCGATCGTGGAAAGCGTGG 61.453 63.158 15.09 0.00 0.00 4.94
361 386 3.081133 CCGATCGTGGAAAGCGTG 58.919 61.111 15.09 0.00 0.00 5.34
362 387 2.813908 GCCGATCGTGGAAAGCGT 60.814 61.111 15.09 0.00 0.00 5.07
363 388 0.874175 TATGCCGATCGTGGAAAGCG 60.874 55.000 15.09 0.00 0.00 4.68
364 389 1.461127 GATATGCCGATCGTGGAAAGC 59.539 52.381 15.09 9.54 0.00 3.51
365 390 2.733552 CAGATATGCCGATCGTGGAAAG 59.266 50.000 15.09 0.00 0.00 2.62
366 391 2.547855 CCAGATATGCCGATCGTGGAAA 60.548 50.000 15.09 0.00 31.21 3.13
367 392 1.000843 CCAGATATGCCGATCGTGGAA 59.999 52.381 15.09 0.00 31.21 3.53
368 393 0.603065 CCAGATATGCCGATCGTGGA 59.397 55.000 15.09 7.31 31.21 4.02
369 394 0.603065 TCCAGATATGCCGATCGTGG 59.397 55.000 15.09 12.95 0.00 4.94
370 395 2.438868 TTCCAGATATGCCGATCGTG 57.561 50.000 15.09 6.80 0.00 4.35
371 396 2.102420 TGTTTCCAGATATGCCGATCGT 59.898 45.455 15.09 0.00 0.00 3.73
372 397 2.754472 TGTTTCCAGATATGCCGATCG 58.246 47.619 8.51 8.51 0.00 3.69
373 398 3.120060 GCATGTTTCCAGATATGCCGATC 60.120 47.826 0.00 0.00 39.88 3.69
374 399 2.816087 GCATGTTTCCAGATATGCCGAT 59.184 45.455 0.00 0.00 39.88 4.18
375 400 2.221169 GCATGTTTCCAGATATGCCGA 58.779 47.619 0.00 0.00 39.88 5.54
376 401 1.948834 TGCATGTTTCCAGATATGCCG 59.051 47.619 0.00 0.00 43.89 5.69
377 402 2.295349 CCTGCATGTTTCCAGATATGCC 59.705 50.000 0.00 0.00 43.89 4.40
378 403 2.295349 CCCTGCATGTTTCCAGATATGC 59.705 50.000 0.00 0.00 44.56 3.14
382 839 0.685458 GGCCCTGCATGTTTCCAGAT 60.685 55.000 0.00 0.00 0.00 2.90
517 974 1.276622 TCTGGGGAACTAAGAGGCAC 58.723 55.000 0.00 0.00 0.00 5.01
630 1113 1.468914 GAGGGAAATTTCAGACACGGC 59.531 52.381 19.49 0.00 0.00 5.68
669 1153 5.934043 GCTAGAAATTTGAAGGCATGGTTTT 59.066 36.000 0.00 0.00 0.00 2.43
671 1155 4.774200 AGCTAGAAATTTGAAGGCATGGTT 59.226 37.500 0.00 0.00 0.00 3.67
676 1160 3.156293 TGCAGCTAGAAATTTGAAGGCA 58.844 40.909 0.00 0.00 0.00 4.75
732 1216 6.917217 AGCTTGCAAATCTGATAGTAAGAC 57.083 37.500 18.24 12.16 0.00 3.01
758 1242 8.753133 CCCAGATGACTAATGAATATGTAGCTA 58.247 37.037 0.00 0.00 0.00 3.32
759 1243 7.455953 TCCCAGATGACTAATGAATATGTAGCT 59.544 37.037 0.00 0.00 0.00 3.32
761 1245 9.650539 CTTCCCAGATGACTAATGAATATGTAG 57.349 37.037 0.00 0.00 0.00 2.74
762 1246 9.159254 ACTTCCCAGATGACTAATGAATATGTA 57.841 33.333 0.00 0.00 0.00 2.29
763 1247 8.038862 ACTTCCCAGATGACTAATGAATATGT 57.961 34.615 0.00 0.00 0.00 2.29
764 1248 9.650539 CTACTTCCCAGATGACTAATGAATATG 57.349 37.037 0.00 0.00 0.00 1.78
765 1249 9.386122 ACTACTTCCCAGATGACTAATGAATAT 57.614 33.333 0.00 0.00 0.00 1.28
766 1250 8.783660 ACTACTTCCCAGATGACTAATGAATA 57.216 34.615 0.00 0.00 0.00 1.75
767 1251 7.682787 ACTACTTCCCAGATGACTAATGAAT 57.317 36.000 0.00 0.00 0.00 2.57
794 1278 7.768240 TGTGCTCTTTGTCGACTTAGAATATA 58.232 34.615 17.92 6.57 0.00 0.86
887 1371 1.197721 CGCAACCTGTTAGCCAAAGAG 59.802 52.381 0.00 0.00 0.00 2.85
935 1419 2.431057 ACGGGCTTGTATTGACTAGAGG 59.569 50.000 0.00 0.00 30.81 3.69
943 1427 1.269448 ACAGCAAACGGGCTTGTATTG 59.731 47.619 0.00 0.00 42.71 1.90
961 1445 6.004574 TGCCCAAACAGTGTTACATATAACA 58.995 36.000 9.37 0.00 46.76 2.41
996 1480 2.290514 ACCACAGTCACCATCCATCTTG 60.291 50.000 0.00 0.00 0.00 3.02
1002 1486 2.270352 TTGAACCACAGTCACCATCC 57.730 50.000 0.00 0.00 0.00 3.51
1023 1507 4.679373 TTGTAATGGCAATTTGTGTGGT 57.321 36.364 0.00 0.00 0.00 4.16
1086 1570 0.666374 CCACACCGAAACCACCTTTC 59.334 55.000 0.00 0.00 35.74 2.62
1149 1633 9.800433 TGTTGTTAGCATGAATATATGGTTTTG 57.200 29.630 0.00 0.00 39.33 2.44
1190 1675 1.519751 TTTCCCCATTCGGTTGCACG 61.520 55.000 0.00 0.00 0.00 5.34
1244 1729 6.165700 ACCTCATTCTCAAATTGCTTTTGT 57.834 33.333 10.97 0.00 44.25 2.83
1657 2202 0.038744 CACTGCAGGTCCCCTCAATT 59.961 55.000 19.93 0.00 0.00 2.32
1694 2239 0.107654 ATAGGCCCGTCAGTTTGCTC 60.108 55.000 0.00 0.00 0.00 4.26
1723 2268 6.338937 CAGTAAGTTAGCGGGTTTTAGATCT 58.661 40.000 0.00 0.00 0.00 2.75
1837 2382 3.440173 AGCATTTCACTTACAATGTCCCG 59.560 43.478 0.00 0.00 33.58 5.14
1901 2446 8.826710 TCCTCTGCAAACAAAATAGTATAATCG 58.173 33.333 0.00 0.00 0.00 3.34
2006 2551 6.350864 GGGTACTTCCTTTCTCCTGTTACTAC 60.351 46.154 0.00 0.00 36.25 2.73
2121 2666 9.720769 ATACAATAATAAATGTACTTCCCGGAG 57.279 33.333 0.73 0.00 35.05 4.63
2208 2754 4.347000 GGATGTATACCCTGGTGCTTTCTA 59.653 45.833 0.00 0.00 0.00 2.10
2239 2785 6.293845 GCATCTCCTTATTTGTAGGCAATCTG 60.294 42.308 0.00 0.00 34.18 2.90
2367 2913 2.352388 TGGCGTTACCTCATTGCTAAC 58.648 47.619 0.00 0.00 40.22 2.34
2410 2956 3.038280 GCATGTGTTGCCGGTCAA 58.962 55.556 1.90 5.14 46.15 3.18
2417 2963 5.783967 CTTTTAGGCAAAAAGCATGTGTTGC 60.784 40.000 9.70 13.13 45.57 4.17
2418 2964 5.740406 CTTTTAGGCAAAAAGCATGTGTTG 58.260 37.500 9.70 0.00 45.57 3.33
2448 2994 3.003480 GTCTACCACTACGGAGTAACGT 58.997 50.000 0.00 0.00 45.13 3.99
2457 3003 1.671845 GGCTCTCTGTCTACCACTACG 59.328 57.143 0.00 0.00 0.00 3.51
2494 3040 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2495 3041 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2496 3042 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2497 3043 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2498 3044 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2499 3045 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
2500 3046 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2501 3047 4.378459 GCTCAAGACACTTATTTTGGGACG 60.378 45.833 0.00 0.00 0.00 4.79
2502 3048 4.762251 AGCTCAAGACACTTATTTTGGGAC 59.238 41.667 0.00 0.00 0.00 4.46
2503 3049 4.985538 AGCTCAAGACACTTATTTTGGGA 58.014 39.130 0.00 0.00 0.00 4.37
2504 3050 5.712152 AAGCTCAAGACACTTATTTTGGG 57.288 39.130 0.00 0.00 0.00 4.12
2505 3051 7.440523 ACTAAGCTCAAGACACTTATTTTGG 57.559 36.000 3.19 0.00 0.00 3.28
2506 3052 8.988934 TGTACTAAGCTCAAGACACTTATTTTG 58.011 33.333 3.19 0.00 0.00 2.44
2507 3053 9.555727 TTGTACTAAGCTCAAGACACTTATTTT 57.444 29.630 3.19 0.00 0.00 1.82
2508 3054 9.555727 TTTGTACTAAGCTCAAGACACTTATTT 57.444 29.630 3.19 0.00 0.00 1.40
2509 3055 9.726438 ATTTGTACTAAGCTCAAGACACTTATT 57.274 29.630 3.19 0.00 0.00 1.40
2510 3056 9.726438 AATTTGTACTAAGCTCAAGACACTTAT 57.274 29.630 3.19 0.00 0.00 1.73
2511 3057 9.555727 AAATTTGTACTAAGCTCAAGACACTTA 57.444 29.630 3.19 0.00 0.00 2.24
2512 3058 8.345565 CAAATTTGTACTAAGCTCAAGACACTT 58.654 33.333 10.15 0.00 0.00 3.16
2513 3059 7.499232 ACAAATTTGTACTAAGCTCAAGACACT 59.501 33.333 22.10 0.00 40.16 3.55
2514 3060 7.639945 ACAAATTTGTACTAAGCTCAAGACAC 58.360 34.615 22.10 2.09 40.16 3.67
2515 3061 7.801716 ACAAATTTGTACTAAGCTCAAGACA 57.198 32.000 22.10 0.00 40.16 3.41
2537 3083 7.013942 TCTCAACTTTGTACAAGCTCTAGTACA 59.986 37.037 17.66 17.66 46.24 2.90
2538 3084 7.326547 GTCTCAACTTTGTACAAGCTCTAGTAC 59.673 40.741 8.56 13.96 40.68 2.73
2539 3085 7.013942 TGTCTCAACTTTGTACAAGCTCTAGTA 59.986 37.037 8.56 0.00 0.00 1.82
2540 3086 6.183360 TGTCTCAACTTTGTACAAGCTCTAGT 60.183 38.462 8.56 6.24 0.00 2.57
2541 3087 6.144724 GTGTCTCAACTTTGTACAAGCTCTAG 59.855 42.308 8.56 5.59 30.99 2.43
2542 3088 5.983720 GTGTCTCAACTTTGTACAAGCTCTA 59.016 40.000 8.56 0.00 30.99 2.43
2543 3089 4.811557 GTGTCTCAACTTTGTACAAGCTCT 59.188 41.667 8.56 0.00 30.99 4.09
2544 3090 4.811557 AGTGTCTCAACTTTGTACAAGCTC 59.188 41.667 8.56 0.00 30.99 4.09
2545 3091 4.770795 AGTGTCTCAACTTTGTACAAGCT 58.229 39.130 8.56 0.00 30.99 3.74
2546 3092 5.485662 AAGTGTCTCAACTTTGTACAAGC 57.514 39.130 8.56 0.00 37.05 4.01
2548 3094 9.781834 CAAAATAAGTGTCTCAACTTTGTACAA 57.218 29.630 3.59 3.59 40.77 2.41
2549 3095 8.402472 CCAAAATAAGTGTCTCAACTTTGTACA 58.598 33.333 0.00 0.00 40.77 2.90
2550 3096 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2551 3097 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2552 3098 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2553 3099 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2554 3100 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2555 3101 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2556 3102 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2557 3103 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2558 3104 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2559 3105 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2560 3106 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2561 3107 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2562 3108 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2563 3109 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2564 3110 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2565 3111 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2566 3112 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2567 3113 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2568 3114 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2569 3115 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2570 3116 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2571 3117 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2572 3118 2.023695 AGTAATACTCCCTCCGTCCCAA 60.024 50.000 0.00 0.00 0.00 4.12
2573 3119 1.572415 AGTAATACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
2574 3120 2.378378 AGTAATACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
2575 3121 4.750021 AAAAGTAATACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
2576 3122 5.485620 ACAAAAAGTAATACTCCCTCCGTC 58.514 41.667 0.00 0.00 0.00 4.79
2577 3123 5.494390 ACAAAAAGTAATACTCCCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
2578 3124 7.011109 CACATACAAAAAGTAATACTCCCTCCG 59.989 40.741 0.00 0.00 36.05 4.63
2579 3125 7.827729 ACACATACAAAAAGTAATACTCCCTCC 59.172 37.037 0.00 0.00 36.05 4.30
2580 3126 8.788325 ACACATACAAAAAGTAATACTCCCTC 57.212 34.615 0.00 0.00 36.05 4.30
2581 3127 7.548075 CGACACATACAAAAAGTAATACTCCCT 59.452 37.037 0.00 0.00 36.05 4.20
2582 3128 7.332678 ACGACACATACAAAAAGTAATACTCCC 59.667 37.037 0.00 0.00 36.05 4.30
2583 3129 8.248117 ACGACACATACAAAAAGTAATACTCC 57.752 34.615 0.00 0.00 36.05 3.85
2584 3130 9.136952 AGACGACACATACAAAAAGTAATACTC 57.863 33.333 0.00 0.00 36.05 2.59
2585 3131 9.485206 AAGACGACACATACAAAAAGTAATACT 57.515 29.630 0.00 0.00 36.05 2.12
2586 3132 9.525007 CAAGACGACACATACAAAAAGTAATAC 57.475 33.333 0.00 0.00 36.05 1.89
2587 3133 8.225107 GCAAGACGACACATACAAAAAGTAATA 58.775 33.333 0.00 0.00 36.05 0.98
2588 3134 7.041372 AGCAAGACGACACATACAAAAAGTAAT 60.041 33.333 0.00 0.00 36.05 1.89
2607 3153 9.319143 ACATCATTTATTGTAGACTAGCAAGAC 57.681 33.333 0.00 0.00 0.00 3.01
2666 3212 8.521176 GTGTATCTTCTCTTTTGTCTACCACTA 58.479 37.037 0.00 0.00 0.00 2.74
2667 3213 7.015292 TGTGTATCTTCTCTTTTGTCTACCACT 59.985 37.037 0.00 0.00 0.00 4.00
3033 3579 6.816140 CCCGTAACCTTAAAATGAAATGCAAT 59.184 34.615 0.00 0.00 0.00 3.56
3061 3607 5.231991 GGTTCAATGCAGTACTTGTTTGTTG 59.768 40.000 0.00 0.00 0.00 3.33
3180 3741 3.389329 TCCTCCCTCACTATGATGCTTTC 59.611 47.826 0.00 0.00 0.00 2.62
3287 3848 0.678684 CCATGACTGCAGGCACATGA 60.679 55.000 32.22 13.92 41.45 3.07
3305 3866 2.312390 GTCACTCTATCCTCCCTCACC 58.688 57.143 0.00 0.00 0.00 4.02
3312 3873 5.076873 AGGCTTAGATGTCACTCTATCCTC 58.923 45.833 0.00 0.00 31.06 3.71
3347 3908 5.754890 ACTGATTGGCATTTTGTCAAAAGTC 59.245 36.000 15.57 9.99 45.80 3.01
3407 3968 0.773644 ATGTTCCTTGGACTGCAGGT 59.226 50.000 19.93 3.31 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.