Multiple sequence alignment - TraesCS7B01G265800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G265800 chr7B 100.000 6978 0 0 1 6978 488375641 488368664 0.000000e+00 12887.0
1 TraesCS7B01G265800 chr7B 95.349 215 7 3 146 357 586246423 586246637 8.670000e-89 339.0
2 TraesCS7B01G265800 chr7B 82.192 146 22 3 1707 1852 212073977 212074118 9.500000e-24 122.0
3 TraesCS7B01G265800 chr7B 83.951 81 8 3 2856 2931 695368955 695369035 9.710000e-09 73.1
4 TraesCS7B01G265800 chr7D 93.959 3228 166 10 2387 5597 463700454 463703669 0.000000e+00 4854.0
5 TraesCS7B01G265800 chr7D 94.136 955 30 11 684 1632 463698345 463699279 0.000000e+00 1430.0
6 TraesCS7B01G265800 chr7D 93.785 708 33 5 1695 2392 463699719 463700425 0.000000e+00 1053.0
7 TraesCS7B01G265800 chr7D 93.052 403 26 2 5579 5980 463703678 463704079 7.800000e-164 588.0
8 TraesCS7B01G265800 chr7D 85.448 268 18 10 355 616 249210514 249210766 6.940000e-65 259.0
9 TraesCS7B01G265800 chr7D 76.381 525 86 27 161 656 378649877 378650392 1.500000e-61 248.0
10 TraesCS7B01G265800 chr7D 92.424 66 1 3 2858 2921 508406839 508406902 2.680000e-14 91.6
11 TraesCS7B01G265800 chr7D 94.872 39 2 0 2854 2892 587927131 587927093 2.100000e-05 62.1
12 TraesCS7B01G265800 chr7A 93.573 2256 122 11 3332 5577 536773928 536771686 0.000000e+00 3341.0
13 TraesCS7B01G265800 chr7A 90.954 1227 83 15 1188 2392 536776659 536775439 0.000000e+00 1626.0
14 TraesCS7B01G265800 chr7A 81.330 1248 179 38 4763 5979 536726856 536725632 0.000000e+00 965.0
15 TraesCS7B01G265800 chr7A 93.189 646 41 1 2690 3335 536774783 536774141 0.000000e+00 946.0
16 TraesCS7B01G265800 chr7A 90.328 641 54 8 5583 6220 536771620 536770985 0.000000e+00 833.0
17 TraesCS7B01G265800 chr7A 89.618 655 23 11 6364 6973 501081588 501082242 0.000000e+00 791.0
18 TraesCS7B01G265800 chr7A 89.387 424 28 7 762 1180 536777318 536776907 1.040000e-142 518.0
19 TraesCS7B01G265800 chr7A 91.667 228 14 2 2390 2617 536775407 536775185 1.890000e-80 311.0
20 TraesCS7B01G265800 chr7A 83.922 255 36 1 355 609 214793384 214793135 9.050000e-59 239.0
21 TraesCS7B01G265800 chr2B 80.396 1464 239 24 4151 5581 638275428 638276876 0.000000e+00 1070.0
22 TraesCS7B01G265800 chr2B 81.777 878 149 9 4711 5578 638528820 638529696 0.000000e+00 725.0
23 TraesCS7B01G265800 chr2B 90.991 555 21 6 6450 6976 335422735 335423288 0.000000e+00 721.0
24 TraesCS7B01G265800 chr2B 76.156 1384 235 70 4245 5579 643359669 643361006 2.120000e-179 640.0
25 TraesCS7B01G265800 chr2B 92.199 282 11 4 344 616 5765191 5765470 8.490000e-104 388.0
26 TraesCS7B01G265800 chr2B 84.000 400 57 7 5582 5979 638529729 638530123 1.840000e-100 377.0
27 TraesCS7B01G265800 chr2B 94.915 236 11 1 6218 6453 335420888 335421122 1.110000e-97 368.0
28 TraesCS7B01G265800 chr2B 85.670 321 40 5 5665 5979 643266814 643267134 4.030000e-87 333.0
29 TraesCS7B01G265800 chr2B 85.358 321 41 5 5665 5979 643361110 643361430 1.880000e-85 327.0
30 TraesCS7B01G265800 chr2B 90.244 246 17 6 141 381 531562852 531563095 1.460000e-81 315.0
31 TraesCS7B01G265800 chr2B 78.867 459 74 18 5131 5577 643266237 643266684 8.860000e-74 289.0
32 TraesCS7B01G265800 chr2B 95.890 73 3 0 617 689 106948361 106948433 1.230000e-22 119.0
33 TraesCS7B01G265800 chr4B 88.172 558 43 10 149 687 380685783 380686336 1.640000e-180 643.0
34 TraesCS7B01G265800 chr4B 95.755 212 6 3 149 357 203203639 203203428 8.670000e-89 339.0
35 TraesCS7B01G265800 chr4B 95.946 74 2 1 617 689 507963921 507963994 1.230000e-22 119.0
36 TraesCS7B01G265800 chr4B 90.141 71 4 3 2852 2921 557995210 557995142 9.640000e-14 89.8
37 TraesCS7B01G265800 chr5B 87.115 357 30 5 348 688 383025325 383025681 2.360000e-104 390.0
38 TraesCS7B01G265800 chr5B 79.699 532 74 20 149 655 528372432 528371910 3.100000e-93 353.0
39 TraesCS7B01G265800 chr5B 87.319 276 21 9 355 616 32134426 32134151 3.160000e-78 303.0
40 TraesCS7B01G265800 chr5B 81.667 180 31 2 1713 1891 539017884 539017706 1.570000e-31 148.0
41 TraesCS7B01G265800 chr5B 97.183 71 2 0 617 687 647898241 647898171 3.420000e-23 121.0
42 TraesCS7B01G265800 chr5B 85.915 71 4 1 2861 2931 623210585 623210521 3.490000e-08 71.3
43 TraesCS7B01G265800 chr5B 85.915 71 4 1 2861 2931 626871981 626871917 3.490000e-08 71.3
44 TraesCS7B01G265800 chr3B 92.000 275 9 2 355 616 190475451 190475177 2.380000e-99 374.0
45 TraesCS7B01G265800 chr3B 92.339 248 15 4 148 393 127305301 127305546 4.010000e-92 350.0
46 TraesCS7B01G265800 chr3B 82.258 186 27 6 1709 1891 752304855 752304673 9.370000e-34 156.0
47 TraesCS7B01G265800 chr3B 88.696 115 10 3 576 687 127305742 127305856 3.390000e-28 137.0
48 TraesCS7B01G265800 chr5D 90.182 275 20 4 347 616 76234136 76233864 1.110000e-92 351.0
49 TraesCS7B01G265800 chr5D 86.722 241 16 5 386 616 452789277 452789043 3.230000e-63 254.0
50 TraesCS7B01G265800 chr5D 80.663 181 27 6 1714 1890 386689100 386689276 4.390000e-27 134.0
51 TraesCS7B01G265800 chr5D 87.324 71 2 2 2856 2920 104694715 104694784 2.700000e-09 75.0
52 TraesCS7B01G265800 chr5D 84.337 83 6 2 2856 2932 123568299 123568218 2.700000e-09 75.0
53 TraesCS7B01G265800 chr5D 95.349 43 2 0 2892 2934 408787894 408787936 1.260000e-07 69.4
54 TraesCS7B01G265800 chr5D 95.000 40 2 0 2892 2931 324411882 324411843 5.840000e-06 63.9
55 TraesCS7B01G265800 chr5D 93.023 43 3 0 2892 2934 436580053 436580095 5.840000e-06 63.9
56 TraesCS7B01G265800 chr5D 97.222 36 0 1 2857 2892 125286889 125286855 7.560000e-05 60.2
57 TraesCS7B01G265800 chr5D 97.222 36 0 1 2856 2891 214921853 214921887 7.560000e-05 60.2
58 TraesCS7B01G265800 chr5D 100.000 32 0 0 2861 2892 521864706 521864737 7.560000e-05 60.2
59 TraesCS7B01G265800 chr5D 100.000 31 0 0 2862 2892 467775152 467775182 2.720000e-04 58.4
60 TraesCS7B01G265800 chr5A 87.097 310 26 3 320 616 696474943 696475251 8.670000e-89 339.0
61 TraesCS7B01G265800 chr5A 94.884 215 8 3 146 357 540032001 540031787 4.030000e-87 333.0
62 TraesCS7B01G265800 chr5A 95.261 211 8 2 147 355 607679174 607678964 4.030000e-87 333.0
63 TraesCS7B01G265800 chr2D 85.981 321 39 5 5665 5979 539417271 539417591 8.670000e-89 339.0
64 TraesCS7B01G265800 chr2D 82.900 269 37 4 355 616 50995879 50996145 4.210000e-57 233.0
65 TraesCS7B01G265800 chr2A 85.981 321 39 5 5665 5979 682626393 682626713 8.670000e-89 339.0
66 TraesCS7B01G265800 chr2A 78.214 459 81 15 5131 5577 682625806 682626257 6.890000e-70 276.0
67 TraesCS7B01G265800 chr2A 90.909 66 2 3 2858 2921 98124985 98125048 1.250000e-12 86.1
68 TraesCS7B01G265800 chr1B 95.714 210 7 2 148 355 17872136 17871927 3.120000e-88 337.0
69 TraesCS7B01G265800 chr1B 84.874 238 16 8 6224 6456 684112410 684112188 9.110000e-54 222.0
70 TraesCS7B01G265800 chr1B 88.571 70 6 1 2862 2931 17017351 17017418 4.490000e-12 84.2
71 TraesCS7B01G265800 chr1B 88.710 62 3 1 2864 2921 561388819 561388880 9.710000e-09 73.1
72 TraesCS7B01G265800 chr6A 93.665 221 10 4 140 357 587897287 587897068 1.880000e-85 327.0
73 TraesCS7B01G265800 chr6A 98.529 68 1 0 618 685 59958253 59958186 3.420000e-23 121.0
74 TraesCS7B01G265800 chr6A 93.506 77 5 0 617 693 606771951 606772027 1.590000e-21 115.0
75 TraesCS7B01G265800 chr6A 90.278 72 5 1 2862 2931 609594898 609594969 7.450000e-15 93.5
76 TraesCS7B01G265800 chrUn 90.141 213 16 4 6248 6456 403496154 403496365 8.920000e-69 272.0
77 TraesCS7B01G265800 chrUn 90.141 213 16 4 6248 6456 475842109 475841898 8.920000e-69 272.0
78 TraesCS7B01G265800 chrUn 95.000 40 2 0 2892 2931 376482451 376482490 5.840000e-06 63.9
79 TraesCS7B01G265800 chrUn 94.872 39 2 0 2893 2931 224655159 224655121 2.100000e-05 62.1
80 TraesCS7B01G265800 chrUn 94.737 38 2 0 2894 2931 60606433 60606396 7.560000e-05 60.2
81 TraesCS7B01G265800 chr1D 87.879 198 13 2 423 614 443510293 443510485 9.110000e-54 222.0
82 TraesCS7B01G265800 chr1D 95.000 40 2 0 2892 2931 18689408 18689369 5.840000e-06 63.9
83 TraesCS7B01G265800 chr1D 96.970 33 0 1 2856 2888 73118371 73118340 4.000000e-03 54.7
84 TraesCS7B01G265800 chr1D 96.970 33 0 1 2856 2888 198281537 198281568 4.000000e-03 54.7
85 TraesCS7B01G265800 chr4D 87.209 172 21 1 6224 6395 476212320 476212490 1.990000e-45 195.0
86 TraesCS7B01G265800 chr4D 92.958 71 1 3 6390 6456 476216392 476216462 4.450000e-17 100.0
87 TraesCS7B01G265800 chr4D 78.571 126 12 6 2815 2928 264315369 264315491 1.260000e-07 69.4
88 TraesCS7B01G265800 chr4D 93.182 44 3 0 2893 2936 443514895 443514938 1.620000e-06 65.8
89 TraesCS7B01G265800 chr4D 91.111 45 4 0 2892 2936 443515526 443515570 2.100000e-05 62.1
90 TraesCS7B01G265800 chr4D 90.909 44 4 0 2893 2936 12440249 12440206 7.560000e-05 60.2
91 TraesCS7B01G265800 chr4D 100.000 29 0 0 2859 2887 93454459 93454487 4.000000e-03 54.7
92 TraesCS7B01G265800 chr4D 92.308 39 2 1 2855 2892 443514941 443514903 4.000000e-03 54.7
93 TraesCS7B01G265800 chr4D 96.875 32 0 1 2856 2887 46199386 46199416 1.300000e-02 52.8
94 TraesCS7B01G265800 chr4D 94.286 35 1 1 2856 2889 429472360 429472326 1.300000e-02 52.8
95 TraesCS7B01G265800 chr3D 81.818 187 30 3 1709 1891 564808647 564808461 3.370000e-33 154.0
96 TraesCS7B01G265800 chr3D 83.051 177 21 9 1710 1882 140625417 140625246 1.210000e-32 152.0
97 TraesCS7B01G265800 chr3D 89.831 59 4 2 2854 2911 489523817 489523874 2.700000e-09 75.0
98 TraesCS7B01G265800 chr3D 95.238 42 2 0 2892 2933 30004965 30005006 4.520000e-07 67.6
99 TraesCS7B01G265800 chr3D 92.500 40 3 0 2849 2888 609983795 609983834 2.720000e-04 58.4
100 TraesCS7B01G265800 chr6B 98.551 69 1 0 617 685 181124800 181124868 9.500000e-24 122.0
101 TraesCS7B01G265800 chr1A 93.243 74 5 0 617 690 586430086 586430159 7.400000e-20 110.0
102 TraesCS7B01G265800 chr1A 77.401 177 32 6 1722 1892 497487133 497486959 1.600000e-16 99.0
103 TraesCS7B01G265800 chr1A 87.302 63 5 3 2862 2924 12569649 12569708 1.260000e-07 69.4
104 TraesCS7B01G265800 chr4A 90.667 75 5 1 2862 2936 608607623 608607695 1.600000e-16 99.0
105 TraesCS7B01G265800 chr6D 87.342 79 6 3 2854 2932 93529493 93529419 3.470000e-13 87.9
106 TraesCS7B01G265800 chr6D 95.000 40 2 0 2892 2931 9346243 9346282 5.840000e-06 63.9
107 TraesCS7B01G265800 chr6D 97.297 37 0 1 2892 2928 461318137 461318102 2.100000e-05 62.1
108 TraesCS7B01G265800 chr6D 94.872 39 0 2 2854 2892 132661081 132661117 7.560000e-05 60.2
109 TraesCS7B01G265800 chr6D 100.000 29 0 0 2860 2888 94768028 94768056 4.000000e-03 54.7
110 TraesCS7B01G265800 chr6D 96.970 33 0 1 2856 2888 128910377 128910408 4.000000e-03 54.7
111 TraesCS7B01G265800 chr6D 96.970 33 0 1 2857 2889 174373788 174373757 4.000000e-03 54.7
112 TraesCS7B01G265800 chr6D 100.000 28 0 0 2892 2919 96747854 96747881 1.300000e-02 52.8
113 TraesCS7B01G265800 chr6D 100.000 28 0 0 2861 2888 157930405 157930432 1.300000e-02 52.8
114 TraesCS7B01G265800 chr6D 100.000 28 0 0 2892 2919 327364412 327364439 1.300000e-02 52.8
115 TraesCS7B01G265800 chr6D 94.286 35 1 1 2858 2892 348647300 348647267 1.300000e-02 52.8
116 TraesCS7B01G265800 chr6D 96.774 31 1 0 2859 2889 412188264 412188294 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G265800 chr7B 488368664 488375641 6977 True 12887.00 12887 100.000000 1 6978 1 chr7B.!!$R1 6977
1 TraesCS7B01G265800 chr7D 463698345 463704079 5734 False 1981.25 4854 93.733000 684 5980 4 chr7D.!!$F4 5296
2 TraesCS7B01G265800 chr7D 378649877 378650392 515 False 248.00 248 76.381000 161 656 1 chr7D.!!$F2 495
3 TraesCS7B01G265800 chr7A 536770985 536777318 6333 True 1262.50 3341 91.516333 762 6220 6 chr7A.!!$R3 5458
4 TraesCS7B01G265800 chr7A 536725632 536726856 1224 True 965.00 965 81.330000 4763 5979 1 chr7A.!!$R2 1216
5 TraesCS7B01G265800 chr7A 501081588 501082242 654 False 791.00 791 89.618000 6364 6973 1 chr7A.!!$F1 609
6 TraesCS7B01G265800 chr2B 638275428 638276876 1448 False 1070.00 1070 80.396000 4151 5581 1 chr2B.!!$F4 1430
7 TraesCS7B01G265800 chr2B 638528820 638530123 1303 False 551.00 725 82.888500 4711 5979 2 chr2B.!!$F6 1268
8 TraesCS7B01G265800 chr2B 335420888 335423288 2400 False 544.50 721 92.953000 6218 6976 2 chr2B.!!$F5 758
9 TraesCS7B01G265800 chr2B 643359669 643361430 1761 False 483.50 640 80.757000 4245 5979 2 chr2B.!!$F8 1734
10 TraesCS7B01G265800 chr2B 643266237 643267134 897 False 311.00 333 82.268500 5131 5979 2 chr2B.!!$F7 848
11 TraesCS7B01G265800 chr4B 380685783 380686336 553 False 643.00 643 88.172000 149 687 1 chr4B.!!$F1 538
12 TraesCS7B01G265800 chr5B 528371910 528372432 522 True 353.00 353 79.699000 149 655 1 chr5B.!!$R2 506
13 TraesCS7B01G265800 chr3B 127305301 127305856 555 False 243.50 350 90.517500 148 687 2 chr3B.!!$F1 539
14 TraesCS7B01G265800 chr2A 682625806 682626713 907 False 307.50 339 82.097500 5131 5979 2 chr2A.!!$F2 848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 957 0.031994 AAACTTGCCACATTGACCGC 59.968 50.0 0.00 0.00 0.00 5.68 F
2296 3169 0.179004 TCCGGTTGGCACTTTCACAT 60.179 50.0 0.00 0.00 34.14 3.21 F
2540 3447 0.677414 GACCGCCCCGTTTGGAATAA 60.677 55.0 0.00 0.00 37.49 1.40 F
2954 4190 0.698238 ACAAGGCATGTTCCCTGCTA 59.302 50.0 0.00 0.00 40.06 3.49 F
4708 6182 0.654683 GCTCATCCATTGTGACGCTC 59.345 55.0 0.00 0.00 0.00 5.03 F
5553 7096 0.036765 CACCAAACTAGCCGGCTACA 60.037 55.0 32.24 15.98 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2461 3368 2.343101 TCAAGTTGTTTCTATCGGGCG 58.657 47.619 2.11 0.0 0.00 6.13 R
4078 5532 1.348696 GTTTCCGGGTAGTTCTTGGGA 59.651 52.381 0.00 0.0 0.00 4.37 R
4368 5833 2.222953 GCCCGACATAACTAAACGCTTG 60.223 50.000 0.00 0.0 0.00 4.01 R
4918 6394 1.965414 TCCAGCTGAGGTATGGGAAA 58.035 50.000 17.39 0.0 34.71 3.13 R
5596 7199 0.240945 CCGAAACTTCTTGCGCCATT 59.759 50.000 4.18 0.0 0.00 3.16 R
6834 10125 0.035317 TGGAGCAGCATGAAACTCGT 59.965 50.000 0.00 0.0 39.69 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.825812 GTGCACCAAACGACTCAAG 57.174 52.632 5.22 0.00 0.00 3.02
19 20 0.307760 GTGCACCAAACGACTCAAGG 59.692 55.000 5.22 0.00 0.00 3.61
20 21 0.817634 TGCACCAAACGACTCAAGGG 60.818 55.000 0.00 0.00 0.00 3.95
21 22 0.818040 GCACCAAACGACTCAAGGGT 60.818 55.000 0.00 0.00 0.00 4.34
22 23 1.675552 CACCAAACGACTCAAGGGTT 58.324 50.000 0.00 0.00 0.00 4.11
23 24 2.021457 CACCAAACGACTCAAGGGTTT 58.979 47.619 0.00 0.00 34.42 3.27
24 25 2.021457 ACCAAACGACTCAAGGGTTTG 58.979 47.619 15.99 15.99 46.14 2.93
29 30 4.568152 AACGACTCAAGGGTTTGATTTG 57.432 40.909 0.00 0.00 42.19 2.32
30 31 2.884639 ACGACTCAAGGGTTTGATTTGG 59.115 45.455 0.00 0.00 42.19 3.28
31 32 3.146066 CGACTCAAGGGTTTGATTTGGA 58.854 45.455 0.00 0.00 42.19 3.53
32 33 3.058224 CGACTCAAGGGTTTGATTTGGAC 60.058 47.826 0.00 0.00 42.19 4.02
33 34 3.230976 ACTCAAGGGTTTGATTTGGACC 58.769 45.455 0.00 0.00 42.19 4.46
34 35 2.228822 CTCAAGGGTTTGATTTGGACCG 59.771 50.000 0.00 0.00 42.19 4.79
35 36 1.272212 CAAGGGTTTGATTTGGACCGG 59.728 52.381 0.00 0.00 36.36 5.28
36 37 0.774908 AGGGTTTGATTTGGACCGGA 59.225 50.000 9.46 0.00 34.22 5.14
37 38 1.146152 AGGGTTTGATTTGGACCGGAA 59.854 47.619 9.46 0.00 34.22 4.30
38 39 1.964933 GGGTTTGATTTGGACCGGAAA 59.035 47.619 9.46 0.00 34.22 3.13
39 40 2.565391 GGGTTTGATTTGGACCGGAAAT 59.435 45.455 9.46 3.34 34.22 2.17
40 41 3.584834 GGTTTGATTTGGACCGGAAATG 58.415 45.455 9.46 0.00 0.00 2.32
41 42 3.257127 GGTTTGATTTGGACCGGAAATGA 59.743 43.478 9.46 0.00 0.00 2.57
42 43 4.081697 GGTTTGATTTGGACCGGAAATGAT 60.082 41.667 9.46 0.00 0.00 2.45
43 44 4.717233 TTGATTTGGACCGGAAATGATG 57.283 40.909 9.46 0.00 0.00 3.07
44 45 3.961849 TGATTTGGACCGGAAATGATGA 58.038 40.909 9.46 0.00 0.00 2.92
45 46 4.339748 TGATTTGGACCGGAAATGATGAA 58.660 39.130 9.46 0.00 0.00 2.57
46 47 4.398988 TGATTTGGACCGGAAATGATGAAG 59.601 41.667 9.46 0.00 0.00 3.02
47 48 3.433306 TTGGACCGGAAATGATGAAGT 57.567 42.857 9.46 0.00 0.00 3.01
48 49 2.985896 TGGACCGGAAATGATGAAGTC 58.014 47.619 9.46 0.00 0.00 3.01
49 50 2.304470 TGGACCGGAAATGATGAAGTCA 59.696 45.455 9.46 0.00 42.06 3.41
50 51 2.939103 GGACCGGAAATGATGAAGTCAG 59.061 50.000 9.46 0.00 40.92 3.51
51 52 3.600388 GACCGGAAATGATGAAGTCAGT 58.400 45.455 9.46 0.00 40.92 3.41
52 53 3.338249 ACCGGAAATGATGAAGTCAGTG 58.662 45.455 9.46 0.00 40.92 3.66
53 54 3.244561 ACCGGAAATGATGAAGTCAGTGT 60.245 43.478 9.46 0.00 40.92 3.55
54 55 3.125829 CCGGAAATGATGAAGTCAGTGTG 59.874 47.826 0.00 0.00 40.92 3.82
55 56 3.425359 CGGAAATGATGAAGTCAGTGTGC 60.425 47.826 0.00 0.00 40.92 4.57
56 57 3.119708 GGAAATGATGAAGTCAGTGTGCC 60.120 47.826 0.00 0.00 40.92 5.01
57 58 2.865119 ATGATGAAGTCAGTGTGCCA 57.135 45.000 0.00 0.00 40.92 4.92
58 59 2.636647 TGATGAAGTCAGTGTGCCAA 57.363 45.000 0.00 0.00 31.80 4.52
59 60 2.221169 TGATGAAGTCAGTGTGCCAAC 58.779 47.619 0.00 0.00 31.80 3.77
60 61 1.195448 GATGAAGTCAGTGTGCCAACG 59.805 52.381 0.00 0.00 0.00 4.10
61 62 0.176910 TGAAGTCAGTGTGCCAACGA 59.823 50.000 0.00 0.00 0.00 3.85
62 63 0.582005 GAAGTCAGTGTGCCAACGAC 59.418 55.000 0.00 0.00 0.00 4.34
63 64 0.814010 AAGTCAGTGTGCCAACGACC 60.814 55.000 0.00 0.00 0.00 4.79
64 65 1.522806 GTCAGTGTGCCAACGACCA 60.523 57.895 0.00 0.00 0.00 4.02
65 66 1.227527 TCAGTGTGCCAACGACCAG 60.228 57.895 0.00 0.00 0.00 4.00
66 67 2.111043 AGTGTGCCAACGACCAGG 59.889 61.111 0.00 0.00 0.00 4.45
67 68 2.110213 GTGTGCCAACGACCAGGA 59.890 61.111 0.00 0.00 0.00 3.86
68 69 1.302511 GTGTGCCAACGACCAGGAT 60.303 57.895 0.00 0.00 0.00 3.24
69 70 0.889186 GTGTGCCAACGACCAGGATT 60.889 55.000 0.00 0.00 0.00 3.01
70 71 0.888736 TGTGCCAACGACCAGGATTG 60.889 55.000 0.00 0.00 0.00 2.67
80 81 3.890527 CCAGGATTGGGAGTTGAGG 57.109 57.895 0.00 0.00 41.05 3.86
81 82 0.257039 CCAGGATTGGGAGTTGAGGG 59.743 60.000 0.00 0.00 41.05 4.30
82 83 0.995024 CAGGATTGGGAGTTGAGGGT 59.005 55.000 0.00 0.00 0.00 4.34
83 84 1.355720 CAGGATTGGGAGTTGAGGGTT 59.644 52.381 0.00 0.00 0.00 4.11
84 85 2.073776 AGGATTGGGAGTTGAGGGTTT 58.926 47.619 0.00 0.00 0.00 3.27
85 86 2.171003 GGATTGGGAGTTGAGGGTTTG 58.829 52.381 0.00 0.00 0.00 2.93
86 87 2.225017 GGATTGGGAGTTGAGGGTTTGA 60.225 50.000 0.00 0.00 0.00 2.69
87 88 3.564352 GGATTGGGAGTTGAGGGTTTGAT 60.564 47.826 0.00 0.00 0.00 2.57
88 89 3.611025 TTGGGAGTTGAGGGTTTGATT 57.389 42.857 0.00 0.00 0.00 2.57
89 90 3.611025 TGGGAGTTGAGGGTTTGATTT 57.389 42.857 0.00 0.00 0.00 2.17
90 91 4.733077 TGGGAGTTGAGGGTTTGATTTA 57.267 40.909 0.00 0.00 0.00 1.40
91 92 4.662278 TGGGAGTTGAGGGTTTGATTTAG 58.338 43.478 0.00 0.00 0.00 1.85
92 93 3.444034 GGGAGTTGAGGGTTTGATTTAGC 59.556 47.826 0.00 0.00 0.00 3.09
93 94 4.336280 GGAGTTGAGGGTTTGATTTAGCT 58.664 43.478 0.00 0.00 0.00 3.32
94 95 5.497474 GGAGTTGAGGGTTTGATTTAGCTA 58.503 41.667 0.00 0.00 0.00 3.32
95 96 5.944007 GGAGTTGAGGGTTTGATTTAGCTAA 59.056 40.000 0.86 0.86 0.00 3.09
96 97 6.127980 GGAGTTGAGGGTTTGATTTAGCTAAC 60.128 42.308 5.45 0.00 0.00 2.34
97 98 6.303839 AGTTGAGGGTTTGATTTAGCTAACA 58.696 36.000 5.45 0.00 0.00 2.41
98 99 6.431234 AGTTGAGGGTTTGATTTAGCTAACAG 59.569 38.462 5.45 0.00 0.00 3.16
99 100 6.121776 TGAGGGTTTGATTTAGCTAACAGA 57.878 37.500 5.45 0.00 0.00 3.41
100 101 6.539173 TGAGGGTTTGATTTAGCTAACAGAA 58.461 36.000 5.45 0.00 0.00 3.02
101 102 7.175104 TGAGGGTTTGATTTAGCTAACAGAAT 58.825 34.615 5.45 0.00 0.00 2.40
102 103 7.121168 TGAGGGTTTGATTTAGCTAACAGAATG 59.879 37.037 5.45 0.00 46.00 2.67
103 104 6.378280 AGGGTTTGATTTAGCTAACAGAATGG 59.622 38.462 5.45 0.00 43.62 3.16
104 105 6.377146 GGGTTTGATTTAGCTAACAGAATGGA 59.623 38.462 5.45 0.00 43.62 3.41
105 106 7.068716 GGGTTTGATTTAGCTAACAGAATGGAT 59.931 37.037 5.45 0.00 43.62 3.41
106 107 8.470002 GGTTTGATTTAGCTAACAGAATGGATT 58.530 33.333 5.45 0.00 43.62 3.01
107 108 9.860898 GTTTGATTTAGCTAACAGAATGGATTT 57.139 29.630 5.45 0.00 43.62 2.17
165 166 0.321671 GCTAAGGCTGGTCACAGTGA 59.678 55.000 0.00 0.00 46.62 3.41
177 179 2.494073 GTCACAGTGAGGAGGACTTAGG 59.506 54.545 2.53 0.00 0.00 2.69
215 218 7.176515 ACACTCCAATACAATTTGCTTATGTGA 59.823 33.333 0.00 0.00 0.00 3.58
224 227 7.021196 ACAATTTGCTTATGTGACACGTATTC 58.979 34.615 8.32 4.55 0.00 1.75
511 707 2.540361 GCATTGGAAAGCGCTATGTGAG 60.540 50.000 12.05 0.00 0.00 3.51
552 761 4.216411 TCCTCATTAACTACTTGCCACC 57.784 45.455 0.00 0.00 0.00 4.61
554 763 4.288626 TCCTCATTAACTACTTGCCACCTT 59.711 41.667 0.00 0.00 0.00 3.50
556 765 6.157994 TCCTCATTAACTACTTGCCACCTTAT 59.842 38.462 0.00 0.00 0.00 1.73
559 768 7.573710 TCATTAACTACTTGCCACCTTATCAT 58.426 34.615 0.00 0.00 0.00 2.45
580 789 7.167924 TCATTTTTGCTTATGTGGCATCTAA 57.832 32.000 0.00 0.00 39.54 2.10
603 813 7.657023 AAGTTACTACCTATGTTACTCCCAG 57.343 40.000 0.00 0.00 0.00 4.45
609 819 7.005296 ACTACCTATGTTACTCCCAGTATGAG 58.995 42.308 0.00 0.00 39.69 2.90
636 854 7.448777 CAGCCTGAGGTAGTAACATAATCTAGA 59.551 40.741 0.00 0.00 0.00 2.43
706 924 7.717875 AGCCTAATAAAACTCGCCACATTATAA 59.282 33.333 0.00 0.00 0.00 0.98
707 925 7.801783 GCCTAATAAAACTCGCCACATTATAAC 59.198 37.037 0.00 0.00 0.00 1.89
708 926 9.052759 CCTAATAAAACTCGCCACATTATAACT 57.947 33.333 0.00 0.00 0.00 2.24
710 928 5.813080 AAAACTCGCCACATTATAACTCC 57.187 39.130 0.00 0.00 0.00 3.85
712 930 3.039011 ACTCGCCACATTATAACTCCCT 58.961 45.455 0.00 0.00 0.00 4.20
713 931 4.220724 ACTCGCCACATTATAACTCCCTA 58.779 43.478 0.00 0.00 0.00 3.53
738 957 0.031994 AAACTTGCCACATTGACCGC 59.968 50.000 0.00 0.00 0.00 5.68
743 962 2.690778 GCCACATTGACCGCCTCAC 61.691 63.158 0.00 0.00 0.00 3.51
749 968 3.825160 TTGACCGCCTCACCACTGC 62.825 63.158 0.00 0.00 0.00 4.40
750 969 4.314440 GACCGCCTCACCACTGCA 62.314 66.667 0.00 0.00 0.00 4.41
751 970 3.612247 GACCGCCTCACCACTGCAT 62.612 63.158 0.00 0.00 0.00 3.96
752 971 2.821366 CCGCCTCACCACTGCATC 60.821 66.667 0.00 0.00 0.00 3.91
892 1116 0.970937 CCCTTCGCCTCACTCCTACA 60.971 60.000 0.00 0.00 0.00 2.74
893 1117 0.457851 CCTTCGCCTCACTCCTACAG 59.542 60.000 0.00 0.00 0.00 2.74
894 1118 1.178276 CTTCGCCTCACTCCTACAGT 58.822 55.000 0.00 0.00 34.67 3.55
895 1119 1.133407 CTTCGCCTCACTCCTACAGTC 59.867 57.143 0.00 0.00 30.26 3.51
896 1120 0.680280 TCGCCTCACTCCTACAGTCC 60.680 60.000 0.00 0.00 30.26 3.85
897 1121 0.681564 CGCCTCACTCCTACAGTCCT 60.682 60.000 0.00 0.00 30.26 3.85
898 1122 1.408405 CGCCTCACTCCTACAGTCCTA 60.408 57.143 0.00 0.00 30.26 2.94
899 1123 2.025898 GCCTCACTCCTACAGTCCTAC 58.974 57.143 0.00 0.00 30.26 3.18
1166 1397 1.203505 TGAAGACCCTCCCACCCAATA 60.204 52.381 0.00 0.00 0.00 1.90
1229 1700 3.483734 CTCGTATACATGTAGCAGAGCG 58.516 50.000 11.91 8.88 0.00 5.03
1442 1927 4.464008 ACTTCAAGATCAAGCTCAACCAA 58.536 39.130 0.00 0.00 0.00 3.67
1528 2014 4.229639 TCTGGATAAGCATGATCACCTCT 58.770 43.478 0.00 0.00 0.00 3.69
1675 2162 4.982295 TCCATTCGTAGATGTATGAAAGCG 59.018 41.667 8.46 1.69 37.64 4.68
1703 2566 7.612266 CAGTCAAACTTCTGCAATTTTGTAAC 58.388 34.615 8.16 2.76 34.99 2.50
1891 2754 4.471548 GACTAAGATCTAGCCACACCCTA 58.528 47.826 0.00 0.00 0.00 3.53
1892 2755 5.081032 GACTAAGATCTAGCCACACCCTAT 58.919 45.833 0.00 0.00 0.00 2.57
1895 2758 4.750833 AGATCTAGCCACACCCTATACT 57.249 45.455 0.00 0.00 0.00 2.12
2133 3006 7.710475 CACAAGTCATTTGGAAAATAACACCTT 59.290 33.333 0.00 0.00 41.25 3.50
2150 3023 3.084786 ACCTTGCTAGCTTTTCATGACC 58.915 45.455 17.23 0.00 0.00 4.02
2218 3091 2.659428 CCACCATTCCAAGAAGATCCC 58.341 52.381 0.00 0.00 0.00 3.85
2296 3169 0.179004 TCCGGTTGGCACTTTCACAT 60.179 50.000 0.00 0.00 34.14 3.21
2336 3209 3.753272 GCTCAAAGATGGAAAGCTACACA 59.247 43.478 0.00 0.00 0.00 3.72
2412 3319 7.893302 ACTTATAGCTATATTCCTGAGCTGTCT 59.107 37.037 14.17 0.00 45.94 3.41
2465 3372 2.296190 ACAAGAGAAAACAAATCCGCCC 59.704 45.455 0.00 0.00 0.00 6.13
2479 3386 1.276989 TCCGCCCGATAGAAACAACTT 59.723 47.619 0.00 0.00 39.76 2.66
2480 3387 1.396996 CCGCCCGATAGAAACAACTTG 59.603 52.381 0.00 0.00 39.76 3.16
2482 3389 2.348666 CGCCCGATAGAAACAACTTGAG 59.651 50.000 0.00 0.00 39.76 3.02
2484 3391 3.371285 GCCCGATAGAAACAACTTGAGAC 59.629 47.826 0.00 0.00 39.76 3.36
2538 3445 2.360726 GACCGCCCCGTTTGGAAT 60.361 61.111 0.00 0.00 37.49 3.01
2539 3446 1.078285 GACCGCCCCGTTTGGAATA 60.078 57.895 0.00 0.00 37.49 1.75
2540 3447 0.677414 GACCGCCCCGTTTGGAATAA 60.677 55.000 0.00 0.00 37.49 1.40
2541 3448 0.961857 ACCGCCCCGTTTGGAATAAC 60.962 55.000 0.00 0.00 37.49 1.89
2599 3506 5.516339 ACTGTTCTGAACTTTTGCAAATTCG 59.484 36.000 20.18 10.77 0.00 3.34
2617 3524 8.383619 GCAAATTCGTGTGATATATATGTCCTC 58.616 37.037 0.00 2.01 0.00 3.71
2618 3525 9.645059 CAAATTCGTGTGATATATATGTCCTCT 57.355 33.333 0.00 0.00 0.00 3.69
2677 3584 8.510505 TCAGCAAACAATTTATTTTATTTGGGC 58.489 29.630 0.00 0.00 0.00 5.36
2781 4017 0.988832 TTCCCGGATAGCAACTGGTT 59.011 50.000 0.73 0.00 32.38 3.67
2794 4030 4.157105 AGCAACTGGTTAAAACAACGAGTT 59.843 37.500 10.52 10.52 45.63 3.01
2827 4063 5.448496 CCTCTCTCAGTCACAGTAGATTTCG 60.448 48.000 0.00 0.00 0.00 3.46
2921 4157 3.682858 ACCACGACACTTATTTTGGATCG 59.317 43.478 0.00 0.00 0.00 3.69
2927 4163 2.612212 CACTTATTTTGGATCGGACGGG 59.388 50.000 0.00 0.00 0.00 5.28
2954 4190 0.698238 ACAAGGCATGTTCCCTGCTA 59.302 50.000 0.00 0.00 40.06 3.49
3043 4279 3.266510 TCAAATGGCAGCTACTGTAGG 57.733 47.619 16.09 2.23 33.43 3.18
3045 4281 3.772572 TCAAATGGCAGCTACTGTAGGTA 59.227 43.478 18.17 4.97 34.67 3.08
3046 4282 4.408921 TCAAATGGCAGCTACTGTAGGTAT 59.591 41.667 18.17 7.03 34.67 2.73
3157 4393 8.373048 TGCTATATCGAAAATTTGACGGTTAT 57.627 30.769 14.78 13.82 0.00 1.89
3169 4405 9.847224 AAATTTGACGGTTATATTGTCCTAGAT 57.153 29.630 0.00 0.00 0.00 1.98
3171 4407 9.924650 ATTTGACGGTTATATTGTCCTAGATAC 57.075 33.333 0.00 0.00 0.00 2.24
3185 4421 4.106502 TCCTAGATACTACATGCTGACCCT 59.893 45.833 0.00 0.00 0.00 4.34
3195 4431 3.195825 ACATGCTGACCCTTACTAGTGAC 59.804 47.826 5.39 0.00 0.00 3.67
3287 4523 6.058183 CCAGTAAAGTTATGCCTGCTAGAAT 58.942 40.000 0.00 0.00 0.00 2.40
3292 4528 9.273016 GTAAAGTTATGCCTGCTAGAATAATCA 57.727 33.333 0.00 0.00 0.00 2.57
3301 4537 5.005779 CCTGCTAGAATAATCAACGACACAC 59.994 44.000 0.00 0.00 0.00 3.82
3468 4920 7.481798 GTCGAACTGGCTTGTTTCAAATATAAG 59.518 37.037 0.00 0.00 0.00 1.73
3472 4924 7.305474 ACTGGCTTGTTTCAAATATAAGTTCG 58.695 34.615 0.00 0.00 0.00 3.95
3638 5090 6.912591 CCTTCGCAAAATGGTCTGATATTTAC 59.087 38.462 4.12 1.03 0.00 2.01
3717 5169 5.962031 TCTGAAGTAGCCAAGGAGGTAATAA 59.038 40.000 0.00 0.00 40.61 1.40
3718 5170 6.442564 TCTGAAGTAGCCAAGGAGGTAATAAA 59.557 38.462 0.00 0.00 40.61 1.40
3720 5172 5.037383 AGTAGCCAAGGAGGTAATAAAGC 57.963 43.478 0.00 0.00 40.61 3.51
3721 5173 3.298686 AGCCAAGGAGGTAATAAAGCC 57.701 47.619 0.00 0.00 40.61 4.35
3723 5175 2.682858 GCCAAGGAGGTAATAAAGCCGT 60.683 50.000 0.00 0.00 40.61 5.68
3724 5176 3.203716 CCAAGGAGGTAATAAAGCCGTC 58.796 50.000 0.00 0.00 0.00 4.79
3725 5177 3.118371 CCAAGGAGGTAATAAAGCCGTCT 60.118 47.826 0.00 0.00 0.00 4.18
3727 5179 4.838904 AGGAGGTAATAAAGCCGTCTTT 57.161 40.909 0.00 0.00 44.22 2.52
3728 5180 5.175388 AGGAGGTAATAAAGCCGTCTTTT 57.825 39.130 0.00 0.00 42.21 2.27
3966 5419 6.553476 ACCCCAGTAATTTAACTTCAAAGCTT 59.447 34.615 0.00 0.00 0.00 3.74
4073 5527 7.639113 TTCAAACAAGTTATGAACTGACCTT 57.361 32.000 0.00 0.00 41.91 3.50
4078 5532 7.881775 ACAAGTTATGAACTGACCTTTTTCT 57.118 32.000 0.00 0.00 41.91 2.52
4088 5542 4.079730 ACTGACCTTTTTCTCCCAAGAACT 60.080 41.667 0.00 0.00 41.23 3.01
4093 5547 3.412237 TTTTCTCCCAAGAACTACCCG 57.588 47.619 0.00 0.00 41.23 5.28
4147 5601 9.594038 CCAGATTAATACACAAAATACGCATAC 57.406 33.333 0.00 0.00 0.00 2.39
4165 5619 6.132056 CGCATACAGTTCTTGATTTATGCTC 58.868 40.000 9.11 0.00 37.24 4.26
4259 5724 4.139786 CTCAATATGCAGGCTATGGTTGT 58.860 43.478 0.00 0.00 0.00 3.32
4599 6071 2.211410 TTGGTGACCGACGACCCAT 61.211 57.895 0.00 0.00 0.00 4.00
4603 6075 1.567504 GTGACCGACGACCCATATTG 58.432 55.000 0.00 0.00 0.00 1.90
4708 6182 0.654683 GCTCATCCATTGTGACGCTC 59.345 55.000 0.00 0.00 0.00 5.03
4748 6224 5.156608 TGAATCAGTCTTCAGATGCTTCA 57.843 39.130 2.07 0.00 31.65 3.02
4918 6394 4.599041 TCGATGTTGATTGGAGGGATTTT 58.401 39.130 0.00 0.00 0.00 1.82
4984 6460 5.498393 AGAGTTCGTACCACAGAATCTAGA 58.502 41.667 0.00 0.00 0.00 2.43
4990 6466 4.094590 CGTACCACAGAATCTAGACGAACT 59.905 45.833 0.00 0.00 0.00 3.01
5186 6689 1.672441 GCAGAGAAGGCACTGACAGAG 60.672 57.143 10.08 1.80 40.86 3.35
5334 6859 4.867608 GCTGTGGTTTGATCTAGTCTTCTC 59.132 45.833 0.00 0.00 0.00 2.87
5367 6905 7.692908 ACCAAATTGTTAACAGAAATGTTCG 57.307 32.000 8.56 0.00 33.59 3.95
5369 6907 6.699642 CCAAATTGTTAACAGAAATGTTCGGT 59.300 34.615 8.56 0.00 39.79 4.69
5393 6936 3.381590 CACATCAGGATCGACTCTACCAA 59.618 47.826 0.00 0.00 0.00 3.67
5423 6966 0.815095 ACGTATGCGGTGATGAGACA 59.185 50.000 8.39 0.00 43.45 3.41
5445 6988 2.118679 TCACCGAGGATCATGTTCCAT 58.881 47.619 22.09 9.38 38.32 3.41
5452 6995 0.309922 GATCATGTTCCATGGCTGCG 59.690 55.000 6.96 0.00 0.00 5.18
5483 7026 1.078759 CCGTGTTCCATGAGACGCTC 61.079 60.000 0.00 0.58 0.00 5.03
5543 7086 2.028476 CGTCCATGAGACCACCAAACTA 60.028 50.000 0.00 0.00 43.08 2.24
5553 7096 0.036765 CACCAAACTAGCCGGCTACA 60.037 55.000 32.24 15.98 0.00 2.74
5707 7349 3.138283 ACATGAACAAGAAGGACTGGGAA 59.862 43.478 0.00 0.00 0.00 3.97
5710 7352 3.458118 TGAACAAGAAGGACTGGGAAGAA 59.542 43.478 0.00 0.00 0.00 2.52
5745 7390 1.320344 CCGGAGAGGTTCATGGACGA 61.320 60.000 0.00 0.00 34.51 4.20
5985 7633 5.372373 GAGAGGGAGGAAGTGAATTAATGG 58.628 45.833 0.00 0.00 0.00 3.16
5987 7635 2.618709 GGGAGGAAGTGAATTAATGGCG 59.381 50.000 0.00 0.00 0.00 5.69
6021 7669 2.226962 ATGAGGTGCTGGATTTGCTT 57.773 45.000 0.00 0.00 0.00 3.91
6041 7689 4.634004 GCTTTTTACAAACTTGGCCAAACT 59.366 37.500 20.91 6.38 0.00 2.66
6058 7706 4.214971 CCAAACTAGATGGCAGCATGATAC 59.785 45.833 5.19 0.00 39.69 2.24
6060 7708 4.268797 ACTAGATGGCAGCATGATACAG 57.731 45.455 5.19 0.00 39.69 2.74
6069 7717 5.530915 TGGCAGCATGATACAGGTTTATAAC 59.469 40.000 0.00 0.00 39.69 1.89
6071 7719 5.236478 GCAGCATGATACAGGTTTATAACGT 59.764 40.000 0.00 0.00 39.69 3.99
6084 7732 6.094464 AGGTTTATAACGTCTAATGGTTTGCC 59.906 38.462 0.00 0.00 0.00 4.52
6111 7759 5.569413 ACAATTTGTTCGTGTCTTCAGTTC 58.431 37.500 0.00 0.00 0.00 3.01
6113 7761 1.205657 TGTTCGTGTCTTCAGTTCGC 58.794 50.000 0.00 0.00 0.00 4.70
6114 7762 1.205657 GTTCGTGTCTTCAGTTCGCA 58.794 50.000 0.00 0.00 0.00 5.10
6116 7764 1.418373 TCGTGTCTTCAGTTCGCATG 58.582 50.000 0.00 0.00 0.00 4.06
6118 7766 2.030628 TCGTGTCTTCAGTTCGCATGTA 60.031 45.455 0.00 0.00 0.00 2.29
6119 7767 2.342651 CGTGTCTTCAGTTCGCATGTAG 59.657 50.000 0.00 0.00 0.00 2.74
6124 7772 4.031878 GTCTTCAGTTCGCATGTAGTTAGC 59.968 45.833 0.00 0.00 0.00 3.09
6125 7773 3.868757 TCAGTTCGCATGTAGTTAGCT 57.131 42.857 0.00 0.00 0.00 3.32
6126 7774 3.511699 TCAGTTCGCATGTAGTTAGCTG 58.488 45.455 0.00 0.00 0.00 4.24
6170 7819 6.159299 TGAAGATAAATCTCTCTCTGCCTG 57.841 41.667 0.00 0.00 35.76 4.85
6173 7822 1.963985 AAATCTCTCTCTGCCTGGGT 58.036 50.000 0.00 0.00 0.00 4.51
6178 7827 2.246067 TCTCTCTCTGCCTGGGTATTCT 59.754 50.000 0.00 0.00 0.00 2.40
6200 7849 6.623486 TCTAAGATGCATCCAACACAAATTG 58.377 36.000 23.06 0.00 0.00 2.32
6245 7894 0.108804 CAGTACAACGGAGCGACCAT 60.109 55.000 0.00 0.00 38.90 3.55
6254 7903 4.498520 AGCGACCATCGAGCCACG 62.499 66.667 1.69 0.00 43.74 4.94
6348 7997 2.160065 CGACGCTGTAACTTTACAACCG 60.160 50.000 15.05 15.05 42.55 4.44
6361 8010 0.618458 ACAACCGTGCCACTCCATAT 59.382 50.000 0.00 0.00 0.00 1.78
6377 8026 2.575532 CATATGTTCGTCCAGCCCAAT 58.424 47.619 0.00 0.00 0.00 3.16
6433 8082 2.426023 GTCACGTGAACTGGGCCT 59.574 61.111 21.95 0.00 0.00 5.19
6456 8105 0.036164 TTGACCACATAAGCCGCTGT 59.964 50.000 0.00 0.00 0.00 4.40
6457 8106 0.673333 TGACCACATAAGCCGCTGTG 60.673 55.000 0.00 0.00 41.89 3.66
6458 8107 1.982073 GACCACATAAGCCGCTGTGC 61.982 60.000 5.86 0.00 41.10 4.57
6459 8108 1.746615 CCACATAAGCCGCTGTGCT 60.747 57.895 5.86 0.00 45.43 4.40
6460 8109 1.709147 CCACATAAGCCGCTGTGCTC 61.709 60.000 5.86 0.00 41.80 4.26
6461 8110 0.742281 CACATAAGCCGCTGTGCTCT 60.742 55.000 0.00 0.00 41.80 4.09
6462 8111 0.742281 ACATAAGCCGCTGTGCTCTG 60.742 55.000 0.00 0.00 41.80 3.35
6464 8113 0.824109 ATAAGCCGCTGTGCTCTGTA 59.176 50.000 0.00 0.00 41.80 2.74
6504 9768 0.685097 ACTGTGGAGGTGCGTATTGT 59.315 50.000 0.00 0.00 0.00 2.71
6517 9781 4.615541 GTGCGTATTGTTACTTCCTTTTGC 59.384 41.667 0.00 0.00 0.00 3.68
6647 9915 0.108329 TAGCCAGCTAACTTGTCGCC 60.108 55.000 0.00 0.00 0.00 5.54
6733 10024 3.075005 GTGCTACTCCCGGCCTCA 61.075 66.667 0.00 0.00 0.00 3.86
6847 10138 1.066573 CCTCCAGACGAGTTTCATGCT 60.067 52.381 0.00 0.00 36.82 3.79
6964 10256 8.687824 AAATATTGTCAAATAGTGCTTTTCGG 57.312 30.769 0.00 0.00 31.81 4.30
6966 10258 4.742438 TGTCAAATAGTGCTTTTCGGTC 57.258 40.909 0.00 0.00 0.00 4.79
6976 10268 2.798283 TGCTTTTCGGTCGTACTCAAAG 59.202 45.455 0.00 0.00 0.00 2.77
6977 10269 3.054878 GCTTTTCGGTCGTACTCAAAGA 58.945 45.455 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.307760 CCTTGAGTCGTTTGGTGCAC 59.692 55.000 8.80 8.80 0.00 4.57
2 3 0.818040 ACCCTTGAGTCGTTTGGTGC 60.818 55.000 0.00 0.00 0.00 5.01
6 7 4.568152 AATCAAACCCTTGAGTCGTTTG 57.432 40.909 12.53 12.53 44.68 2.93
7 8 4.202111 CCAAATCAAACCCTTGAGTCGTTT 60.202 41.667 0.00 0.00 44.68 3.60
8 9 3.317993 CCAAATCAAACCCTTGAGTCGTT 59.682 43.478 0.00 0.00 44.68 3.85
9 10 2.884639 CCAAATCAAACCCTTGAGTCGT 59.115 45.455 0.00 0.00 44.68 4.34
10 11 3.058224 GTCCAAATCAAACCCTTGAGTCG 60.058 47.826 0.00 0.00 44.68 4.18
11 12 3.255888 GGTCCAAATCAAACCCTTGAGTC 59.744 47.826 0.00 0.00 44.68 3.36
12 13 3.230976 GGTCCAAATCAAACCCTTGAGT 58.769 45.455 0.00 0.00 44.68 3.41
13 14 2.228822 CGGTCCAAATCAAACCCTTGAG 59.771 50.000 0.00 0.00 44.68 3.02
14 15 2.235016 CGGTCCAAATCAAACCCTTGA 58.765 47.619 0.00 0.00 45.53 3.02
15 16 1.272212 CCGGTCCAAATCAAACCCTTG 59.728 52.381 0.00 0.00 0.00 3.61
16 17 1.146152 TCCGGTCCAAATCAAACCCTT 59.854 47.619 0.00 0.00 0.00 3.95
17 18 0.774908 TCCGGTCCAAATCAAACCCT 59.225 50.000 0.00 0.00 0.00 4.34
18 19 1.623163 TTCCGGTCCAAATCAAACCC 58.377 50.000 0.00 0.00 0.00 4.11
19 20 3.257127 TCATTTCCGGTCCAAATCAAACC 59.743 43.478 0.00 0.00 0.00 3.27
20 21 4.513198 TCATTTCCGGTCCAAATCAAAC 57.487 40.909 0.00 0.00 0.00 2.93
21 22 4.769488 TCATCATTTCCGGTCCAAATCAAA 59.231 37.500 0.00 0.00 0.00 2.69
22 23 4.339748 TCATCATTTCCGGTCCAAATCAA 58.660 39.130 0.00 0.00 0.00 2.57
23 24 3.961849 TCATCATTTCCGGTCCAAATCA 58.038 40.909 0.00 0.00 0.00 2.57
24 25 4.399303 ACTTCATCATTTCCGGTCCAAATC 59.601 41.667 0.00 0.00 0.00 2.17
25 26 4.344104 ACTTCATCATTTCCGGTCCAAAT 58.656 39.130 0.00 0.00 0.00 2.32
26 27 3.756434 GACTTCATCATTTCCGGTCCAAA 59.244 43.478 0.00 0.00 0.00 3.28
27 28 3.244735 TGACTTCATCATTTCCGGTCCAA 60.245 43.478 0.00 0.00 29.99 3.53
28 29 2.304470 TGACTTCATCATTTCCGGTCCA 59.696 45.455 0.00 0.00 29.99 4.02
29 30 2.939103 CTGACTTCATCATTTCCGGTCC 59.061 50.000 0.00 0.00 36.48 4.46
30 31 3.372206 CACTGACTTCATCATTTCCGGTC 59.628 47.826 0.00 0.00 36.48 4.79
31 32 3.244561 ACACTGACTTCATCATTTCCGGT 60.245 43.478 0.00 0.00 36.48 5.28
32 33 3.125829 CACACTGACTTCATCATTTCCGG 59.874 47.826 0.00 0.00 36.48 5.14
33 34 3.425359 GCACACTGACTTCATCATTTCCG 60.425 47.826 0.00 0.00 36.48 4.30
34 35 3.119708 GGCACACTGACTTCATCATTTCC 60.120 47.826 0.00 0.00 36.48 3.13
35 36 3.503363 TGGCACACTGACTTCATCATTTC 59.497 43.478 0.00 0.00 36.48 2.17
36 37 3.489355 TGGCACACTGACTTCATCATTT 58.511 40.909 0.00 0.00 36.48 2.32
37 38 3.144657 TGGCACACTGACTTCATCATT 57.855 42.857 0.00 0.00 36.48 2.57
38 39 2.816087 GTTGGCACACTGACTTCATCAT 59.184 45.455 0.00 0.00 39.29 2.45
39 40 2.221169 GTTGGCACACTGACTTCATCA 58.779 47.619 0.00 0.00 39.29 3.07
40 41 1.195448 CGTTGGCACACTGACTTCATC 59.805 52.381 0.00 0.00 39.29 2.92
41 42 1.202639 TCGTTGGCACACTGACTTCAT 60.203 47.619 0.00 0.00 39.29 2.57
42 43 0.176910 TCGTTGGCACACTGACTTCA 59.823 50.000 0.00 0.00 39.29 3.02
43 44 0.582005 GTCGTTGGCACACTGACTTC 59.418 55.000 0.00 0.00 39.29 3.01
44 45 0.814010 GGTCGTTGGCACACTGACTT 60.814 55.000 15.85 0.00 40.98 3.01
45 46 1.227556 GGTCGTTGGCACACTGACT 60.228 57.895 15.85 0.00 40.98 3.41
46 47 1.498865 CTGGTCGTTGGCACACTGAC 61.499 60.000 0.00 2.15 39.29 3.51
47 48 1.227527 CTGGTCGTTGGCACACTGA 60.228 57.895 0.00 0.00 39.29 3.41
48 49 2.253758 CCTGGTCGTTGGCACACTG 61.254 63.158 0.00 0.00 39.29 3.66
49 50 1.768684 ATCCTGGTCGTTGGCACACT 61.769 55.000 0.00 0.00 39.29 3.55
50 51 0.889186 AATCCTGGTCGTTGGCACAC 60.889 55.000 0.00 0.00 39.29 3.82
51 52 0.888736 CAATCCTGGTCGTTGGCACA 60.889 55.000 0.00 0.00 0.00 4.57
52 53 1.586154 CCAATCCTGGTCGTTGGCAC 61.586 60.000 12.69 0.00 38.00 5.01
53 54 1.303236 CCAATCCTGGTCGTTGGCA 60.303 57.895 12.69 0.00 38.00 4.92
54 55 2.046285 CCCAATCCTGGTCGTTGGC 61.046 63.158 17.08 0.00 41.72 4.52
55 56 0.392998 CTCCCAATCCTGGTCGTTGG 60.393 60.000 16.14 16.14 41.72 3.77
56 57 0.324943 ACTCCCAATCCTGGTCGTTG 59.675 55.000 0.00 0.00 41.72 4.10
57 58 1.064825 AACTCCCAATCCTGGTCGTT 58.935 50.000 0.00 0.00 41.72 3.85
58 59 0.324943 CAACTCCCAATCCTGGTCGT 59.675 55.000 0.00 0.00 41.72 4.34
59 60 0.613260 TCAACTCCCAATCCTGGTCG 59.387 55.000 0.00 0.00 41.72 4.79
60 61 1.065126 CCTCAACTCCCAATCCTGGTC 60.065 57.143 0.00 0.00 41.72 4.02
61 62 0.995024 CCTCAACTCCCAATCCTGGT 59.005 55.000 0.00 0.00 41.72 4.00
62 63 0.257039 CCCTCAACTCCCAATCCTGG 59.743 60.000 0.00 0.00 43.10 4.45
63 64 0.995024 ACCCTCAACTCCCAATCCTG 59.005 55.000 0.00 0.00 0.00 3.86
64 65 1.760405 AACCCTCAACTCCCAATCCT 58.240 50.000 0.00 0.00 0.00 3.24
65 66 2.171003 CAAACCCTCAACTCCCAATCC 58.829 52.381 0.00 0.00 0.00 3.01
66 67 3.154827 TCAAACCCTCAACTCCCAATC 57.845 47.619 0.00 0.00 0.00 2.67
67 68 3.833559 ATCAAACCCTCAACTCCCAAT 57.166 42.857 0.00 0.00 0.00 3.16
68 69 3.611025 AATCAAACCCTCAACTCCCAA 57.389 42.857 0.00 0.00 0.00 4.12
69 70 3.611025 AAATCAAACCCTCAACTCCCA 57.389 42.857 0.00 0.00 0.00 4.37
70 71 3.444034 GCTAAATCAAACCCTCAACTCCC 59.556 47.826 0.00 0.00 0.00 4.30
71 72 4.336280 AGCTAAATCAAACCCTCAACTCC 58.664 43.478 0.00 0.00 0.00 3.85
72 73 6.430000 TGTTAGCTAAATCAAACCCTCAACTC 59.570 38.462 7.99 0.00 0.00 3.01
73 74 6.303839 TGTTAGCTAAATCAAACCCTCAACT 58.696 36.000 7.99 0.00 0.00 3.16
74 75 6.430000 TCTGTTAGCTAAATCAAACCCTCAAC 59.570 38.462 7.99 0.00 0.00 3.18
75 76 6.539173 TCTGTTAGCTAAATCAAACCCTCAA 58.461 36.000 7.99 0.00 0.00 3.02
76 77 6.121776 TCTGTTAGCTAAATCAAACCCTCA 57.878 37.500 7.99 0.00 0.00 3.86
77 78 7.415653 CCATTCTGTTAGCTAAATCAAACCCTC 60.416 40.741 7.99 0.00 0.00 4.30
78 79 6.378280 CCATTCTGTTAGCTAAATCAAACCCT 59.622 38.462 7.99 0.00 0.00 4.34
79 80 6.377146 TCCATTCTGTTAGCTAAATCAAACCC 59.623 38.462 7.99 0.00 0.00 4.11
80 81 7.391148 TCCATTCTGTTAGCTAAATCAAACC 57.609 36.000 7.99 0.00 0.00 3.27
81 82 9.860898 AAATCCATTCTGTTAGCTAAATCAAAC 57.139 29.630 7.99 0.00 0.00 2.93
116 117 9.914131 GCAAAGAGTAACTTTCCAAGATTTTAT 57.086 29.630 0.00 0.00 45.66 1.40
117 118 8.357402 GGCAAAGAGTAACTTTCCAAGATTTTA 58.643 33.333 0.00 0.00 45.66 1.52
118 119 7.147742 TGGCAAAGAGTAACTTTCCAAGATTTT 60.148 33.333 0.00 0.00 45.66 1.82
119 120 6.323739 TGGCAAAGAGTAACTTTCCAAGATTT 59.676 34.615 0.00 0.00 45.66 2.17
120 121 5.833131 TGGCAAAGAGTAACTTTCCAAGATT 59.167 36.000 0.00 0.00 45.66 2.40
121 122 5.385198 TGGCAAAGAGTAACTTTCCAAGAT 58.615 37.500 0.00 0.00 45.66 2.40
122 123 4.787551 TGGCAAAGAGTAACTTTCCAAGA 58.212 39.130 0.00 0.00 45.66 3.02
123 124 5.464168 CATGGCAAAGAGTAACTTTCCAAG 58.536 41.667 0.00 0.00 45.66 3.61
124 125 4.261994 GCATGGCAAAGAGTAACTTTCCAA 60.262 41.667 0.00 0.00 45.66 3.53
125 126 3.255642 GCATGGCAAAGAGTAACTTTCCA 59.744 43.478 0.00 0.00 45.66 3.53
126 127 3.507622 AGCATGGCAAAGAGTAACTTTCC 59.492 43.478 0.00 0.00 45.66 3.13
127 128 4.773323 AGCATGGCAAAGAGTAACTTTC 57.227 40.909 0.00 0.00 45.66 2.62
129 130 4.702131 CCTTAGCATGGCAAAGAGTAACTT 59.298 41.667 0.00 0.00 40.98 2.66
130 131 4.265073 CCTTAGCATGGCAAAGAGTAACT 58.735 43.478 0.00 0.00 0.00 2.24
131 132 4.622701 CCTTAGCATGGCAAAGAGTAAC 57.377 45.455 0.00 0.00 0.00 2.50
142 143 0.035152 TGTGACCAGCCTTAGCATGG 60.035 55.000 0.00 0.27 43.56 3.66
143 144 1.339438 ACTGTGACCAGCCTTAGCATG 60.339 52.381 0.00 0.00 42.81 4.06
144 145 0.987294 ACTGTGACCAGCCTTAGCAT 59.013 50.000 0.00 0.00 42.81 3.79
145 146 0.035317 CACTGTGACCAGCCTTAGCA 59.965 55.000 0.32 0.00 42.81 3.49
146 147 0.321671 TCACTGTGACCAGCCTTAGC 59.678 55.000 6.36 0.00 42.81 3.09
165 166 4.957327 GTGATGTTACTCCTAAGTCCTCCT 59.043 45.833 0.00 0.00 36.92 3.69
177 179 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
215 218 5.186021 ACCTCTCTCTTCATTGAATACGTGT 59.814 40.000 0.00 0.00 0.00 4.49
224 227 3.436015 CACAAGCACCTCTCTCTTCATTG 59.564 47.826 0.00 0.00 0.00 2.82
316 319 7.979537 GGAACATCTATGTAGTGTCATACAACA 59.020 37.037 0.00 0.00 40.80 3.33
473 669 6.003326 TCCAATGCAAAATGAGTCTACAGAA 58.997 36.000 0.00 0.00 0.00 3.02
475 671 5.885230 TCCAATGCAAAATGAGTCTACAG 57.115 39.130 0.00 0.00 0.00 2.74
511 707 5.746284 AGGAAAGAGGCAAATAGAGTAACC 58.254 41.667 0.00 0.00 0.00 2.85
552 761 7.924412 AGATGCCACATAAGCAAAAATGATAAG 59.076 33.333 0.00 0.00 44.83 1.73
554 763 7.350744 AGATGCCACATAAGCAAAAATGATA 57.649 32.000 0.00 0.00 44.83 2.15
556 765 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
559 768 6.588719 ACTTAGATGCCACATAAGCAAAAA 57.411 33.333 0.00 0.00 44.83 1.94
580 789 6.739664 ACTGGGAGTAACATAGGTAGTAACT 58.260 40.000 0.00 0.00 0.00 2.24
603 813 2.035632 ACTACCTCAGGCTGCTCATAC 58.964 52.381 10.34 0.00 0.00 2.39
609 819 2.990066 ATGTTACTACCTCAGGCTGC 57.010 50.000 10.34 0.00 0.00 5.25
636 854 9.774413 ACATAAGCTAGTAACTTACACACTTTT 57.226 29.630 1.79 0.00 32.67 2.27
667 885 1.072266 TTAGGCTGGTCACAATGGGT 58.928 50.000 0.00 0.00 0.00 4.51
724 943 2.359850 GAGGCGGTCAATGTGGCA 60.360 61.111 0.00 0.00 0.00 4.92
735 954 2.821366 GATGCAGTGGTGAGGCGG 60.821 66.667 0.00 0.00 0.00 6.13
736 955 2.821366 GGATGCAGTGGTGAGGCG 60.821 66.667 0.00 0.00 0.00 5.52
738 957 0.392193 GTCTGGATGCAGTGGTGAGG 60.392 60.000 14.43 0.00 0.00 3.86
743 962 1.807165 CGACGTCTGGATGCAGTGG 60.807 63.158 14.43 9.59 0.00 4.00
749 968 2.163390 CAGCTGCGACGTCTGGATG 61.163 63.158 14.70 8.39 0.00 3.51
750 969 1.877576 TTCAGCTGCGACGTCTGGAT 61.878 55.000 14.70 0.00 0.00 3.41
751 970 1.877576 ATTCAGCTGCGACGTCTGGA 61.878 55.000 14.70 7.66 0.00 3.86
752 971 1.016130 AATTCAGCTGCGACGTCTGG 61.016 55.000 14.70 4.55 0.00 3.86
892 1116 3.616802 GCGCCTTGAGTTTTAGTAGGACT 60.617 47.826 0.00 0.00 0.00 3.85
893 1117 2.671888 GCGCCTTGAGTTTTAGTAGGAC 59.328 50.000 0.00 0.00 0.00 3.85
894 1118 2.673043 CGCGCCTTGAGTTTTAGTAGGA 60.673 50.000 0.00 0.00 0.00 2.94
895 1119 1.659098 CGCGCCTTGAGTTTTAGTAGG 59.341 52.381 0.00 0.00 0.00 3.18
896 1120 1.060698 GCGCGCCTTGAGTTTTAGTAG 59.939 52.381 23.24 0.00 0.00 2.57
897 1121 1.073177 GCGCGCCTTGAGTTTTAGTA 58.927 50.000 23.24 0.00 0.00 1.82
898 1122 0.882927 TGCGCGCCTTGAGTTTTAGT 60.883 50.000 30.77 0.00 0.00 2.24
899 1123 0.452784 GTGCGCGCCTTGAGTTTTAG 60.453 55.000 30.77 0.00 0.00 1.85
947 1178 2.384828 GGAGAGGAGGAAAGGAGACTC 58.615 57.143 0.00 0.00 42.68 3.36
950 1181 1.093408 TGGGAGAGGAGGAAAGGAGA 58.907 55.000 0.00 0.00 0.00 3.71
1149 1380 1.821088 GATATTGGGTGGGAGGGTCT 58.179 55.000 0.00 0.00 0.00 3.85
1166 1397 7.325660 AGAAAACATGATGCATTTAGACGAT 57.674 32.000 0.00 0.00 0.00 3.73
1244 1715 7.740805 ACCTAAGGAAAATTGTGGCATAAAAA 58.259 30.769 0.00 0.00 0.00 1.94
1392 1877 6.947644 TGGACTTACGACAAGCTGTATATA 57.052 37.500 0.00 0.00 0.00 0.86
1400 1885 5.857822 AGTTTTATGGACTTACGACAAGC 57.142 39.130 0.00 0.00 0.00 4.01
1528 2014 6.757897 AATTCGCAGATCACTTATTTGGAA 57.242 33.333 0.00 0.00 35.04 3.53
1604 2090 5.408299 GCAAGTATTTAAAGGTTTTGCCCAG 59.592 40.000 13.93 0.00 38.26 4.45
1650 2136 6.216569 GCTTTCATACATCTACGAATGGAGA 58.783 40.000 0.00 0.00 0.00 3.71
1703 2566 5.106157 ACAGAGATTTAGCAATCCCGTTTTG 60.106 40.000 0.00 0.00 39.95 2.44
1830 2693 6.814146 CCAAGTCTTAGTCAAGTGATAGAACC 59.186 42.308 0.00 0.00 33.20 3.62
1866 2729 3.570550 GGTGTGGCTAGATCTTAGTCGAT 59.429 47.826 0.00 0.00 0.00 3.59
1895 2758 8.682710 CAGCCTTACAGCCAGTTTTTAATATTA 58.317 33.333 0.00 0.00 0.00 0.98
1911 2775 6.575162 AAAAATACTGTTCCAGCCTTACAG 57.425 37.500 0.00 0.00 43.72 2.74
2096 2969 5.290158 CCAAATGACTTGTGCATAAATCTGC 59.710 40.000 6.22 0.00 36.10 4.26
2106 2979 6.073819 GGTGTTATTTTCCAAATGACTTGTGC 60.074 38.462 5.91 0.00 32.65 4.57
2133 3006 3.753272 GAGTTGGTCATGAAAAGCTAGCA 59.247 43.478 18.83 0.00 0.00 3.49
2150 3023 6.644347 ACATGTTCTTATGTCTAGGGAGTTG 58.356 40.000 0.00 0.00 36.60 3.16
2181 3054 7.363007 GGAATGGTGGGAAGTAAAAGATTCTTC 60.363 40.741 0.00 0.00 37.44 2.87
2226 3099 3.646534 AGGGGCTTGGAAATTGGATTAG 58.353 45.455 0.00 0.00 0.00 1.73
2227 3100 3.774842 AGGGGCTTGGAAATTGGATTA 57.225 42.857 0.00 0.00 0.00 1.75
2268 3141 2.425592 CCAACCGGACTGCTCACA 59.574 61.111 9.46 0.00 0.00 3.58
2323 3196 6.647334 TTCAATCAATTGTGTAGCTTTCCA 57.353 33.333 5.13 0.00 38.84 3.53
2336 3209 9.151471 CATCTCATTGCTTCTTTTCAATCAATT 57.849 29.630 0.00 0.00 31.15 2.32
2461 3368 2.343101 TCAAGTTGTTTCTATCGGGCG 58.657 47.619 2.11 0.00 0.00 6.13
2465 3372 5.824243 AACGTCTCAAGTTGTTTCTATCG 57.176 39.130 2.11 3.03 0.00 2.92
2482 3389 5.215160 AGCACATGAAAATGAGAAAACGTC 58.785 37.500 0.00 0.00 0.00 4.34
2484 3391 6.515043 AAAGCACATGAAAATGAGAAAACG 57.485 33.333 0.00 0.00 0.00 3.60
2538 3445 5.338626 GGAGTCGGGGAATTCCTTTTAGTTA 60.339 44.000 23.63 0.00 35.95 2.24
2539 3446 4.567116 GGAGTCGGGGAATTCCTTTTAGTT 60.567 45.833 23.63 4.54 35.95 2.24
2540 3447 3.054582 GGAGTCGGGGAATTCCTTTTAGT 60.055 47.826 23.63 9.99 35.95 2.24
2541 3448 3.200165 AGGAGTCGGGGAATTCCTTTTAG 59.800 47.826 23.63 10.79 36.69 1.85
2599 3506 9.950496 ATTTTGGAGAGGACATATATATCACAC 57.050 33.333 0.00 0.00 0.00 3.82
2668 3575 2.695970 CCCCCTCCCGCCCAAATAA 61.696 63.158 0.00 0.00 0.00 1.40
2781 4017 4.812626 GGAACCTCTCAACTCGTTGTTTTA 59.187 41.667 9.38 0.00 41.16 1.52
2808 4044 6.808704 TGATTTCGAAATCTACTGTGACTGAG 59.191 38.462 37.31 0.00 43.97 3.35
2827 4063 8.186163 TCAGATGTGTTTGATAAGCATGATTTC 58.814 33.333 0.00 0.29 0.00 2.17
2921 4157 1.746470 CCTTGTCAAATACCCCGTCC 58.254 55.000 0.00 0.00 0.00 4.79
2927 4163 3.119137 GGGAACATGCCTTGTCAAATACC 60.119 47.826 0.00 0.00 37.68 2.73
3021 4257 4.408921 ACCTACAGTAGCTGCCATTTGATA 59.591 41.667 1.50 0.00 34.37 2.15
3043 4279 5.412594 TGTTCAGAATGCTCCTGTTTCATAC 59.587 40.000 0.00 0.00 34.76 2.39
3045 4281 4.401022 TGTTCAGAATGCTCCTGTTTCAT 58.599 39.130 0.00 0.00 34.76 2.57
3046 4282 3.817084 CTGTTCAGAATGCTCCTGTTTCA 59.183 43.478 0.00 0.00 34.76 2.69
3147 4383 8.701908 AGTATCTAGGACAATATAACCGTCAA 57.298 34.615 0.00 0.00 0.00 3.18
3157 4393 7.176865 GGTCAGCATGTAGTATCTAGGACAATA 59.823 40.741 0.00 0.00 37.40 1.90
3169 4405 5.593095 CACTAGTAAGGGTCAGCATGTAGTA 59.407 44.000 0.00 0.00 37.40 1.82
3170 4406 4.402793 CACTAGTAAGGGTCAGCATGTAGT 59.597 45.833 0.00 0.00 37.40 2.73
3171 4407 4.645136 TCACTAGTAAGGGTCAGCATGTAG 59.355 45.833 0.00 0.00 37.40 2.74
3185 4421 5.762825 AGAATAATCCGCGTCACTAGTAA 57.237 39.130 4.92 0.00 0.00 2.24
3195 4431 4.565166 TGTTGAACACTAGAATAATCCGCG 59.435 41.667 0.00 0.00 0.00 6.46
3253 4489 2.789409 ACTTTACTGGGAGGTCATGC 57.211 50.000 0.00 0.00 0.00 4.06
3287 4523 9.758651 AGCATATATAAAGTGTGTCGTTGATTA 57.241 29.630 0.00 0.00 0.00 1.75
3292 4528 9.193133 GATACAGCATATATAAAGTGTGTCGTT 57.807 33.333 5.07 0.00 0.00 3.85
3427 4879 5.237996 CCAGTTCGACAATTCATCTGCATAT 59.762 40.000 0.00 0.00 0.00 1.78
3436 4888 2.571212 ACAAGCCAGTTCGACAATTCA 58.429 42.857 0.00 0.00 0.00 2.57
3442 4894 3.414549 TTTGAAACAAGCCAGTTCGAC 57.585 42.857 0.00 0.00 0.00 4.20
3468 4920 5.578776 CAGTATTAATTTGAAGGGCCGAAC 58.421 41.667 0.00 0.00 0.00 3.95
3472 4924 6.709018 TTAGCAGTATTAATTTGAAGGGCC 57.291 37.500 0.00 0.00 0.00 5.80
3638 5090 4.454504 GTCTTTATGGTGTATATTGGCCCG 59.545 45.833 0.00 0.00 0.00 6.13
3784 5236 5.007528 CACAATTACCCAAAAGTGCAAAAGG 59.992 40.000 0.00 0.00 0.00 3.11
4073 5527 2.039348 CCGGGTAGTTCTTGGGAGAAAA 59.961 50.000 0.00 0.00 43.21 2.29
4078 5532 1.348696 GTTTCCGGGTAGTTCTTGGGA 59.651 52.381 0.00 0.00 0.00 4.37
4088 5542 7.337167 TGTAGCTTAATAATTGTTTCCGGGTA 58.663 34.615 0.00 0.00 0.00 3.69
4147 5601 6.183360 TGCATCAGAGCATAAATCAAGAACTG 60.183 38.462 0.00 0.00 40.11 3.16
4165 5619 9.797556 TTCTATCATTTCTCAATTTTGCATCAG 57.202 29.630 0.00 0.00 0.00 2.90
4259 5724 8.007405 TCGAGTAGAAATGGATGAGTATTTCA 57.993 34.615 11.01 0.00 42.75 2.69
4368 5833 2.222953 GCCCGACATAACTAAACGCTTG 60.223 50.000 0.00 0.00 0.00 4.01
4632 6104 2.357517 CAGGCGGAACAGCTCGTT 60.358 61.111 1.82 1.82 41.86 3.85
4708 6182 8.954350 ACTGATTCAAATCAAGAAACTGATAGG 58.046 33.333 6.85 0.00 44.20 2.57
4918 6394 1.965414 TCCAGCTGAGGTATGGGAAA 58.035 50.000 17.39 0.00 34.71 3.13
4984 6460 1.535462 GCTTGCATTACCACAGTTCGT 59.465 47.619 0.00 0.00 0.00 3.85
4990 6466 2.284754 TCAAGGCTTGCATTACCACA 57.715 45.000 22.31 0.00 0.00 4.17
5186 6689 2.163010 CACCAGCATCATCAACTGTTCC 59.837 50.000 0.00 0.00 0.00 3.62
5334 6859 2.524569 AACAATTTGGTTCCGGCAAG 57.475 45.000 0.00 0.00 0.00 4.01
5367 6905 2.428890 AGAGTCGATCCTGATGTGAACC 59.571 50.000 0.00 0.00 0.00 3.62
5369 6907 3.632604 GGTAGAGTCGATCCTGATGTGAA 59.367 47.826 0.00 0.00 0.00 3.18
5393 6936 1.516365 CGCATACGTCCCGGATCTCT 61.516 60.000 0.73 0.00 33.53 3.10
5408 6951 0.897621 TGACTGTCTCATCACCGCAT 59.102 50.000 9.51 0.00 0.00 4.73
5414 6957 1.177401 CCTCGGTGACTGTCTCATCA 58.823 55.000 9.51 0.00 29.18 3.07
5417 6960 1.271926 TGATCCTCGGTGACTGTCTCA 60.272 52.381 9.51 0.00 0.00 3.27
5423 6966 1.482593 GGAACATGATCCTCGGTGACT 59.517 52.381 14.49 0.00 36.50 3.41
5452 6995 3.584868 AACACGGCGCTGAGGTACC 62.585 63.158 25.98 2.73 0.00 3.34
5543 7086 4.078516 GGGACGTTGTAGCCGGCT 62.079 66.667 34.85 34.85 32.71 5.52
5596 7199 0.240945 CCGAAACTTCTTGCGCCATT 59.759 50.000 4.18 0.00 0.00 3.16
5642 7284 5.171339 ACTATCTGGAACAATTGAGCAGT 57.829 39.130 13.59 3.29 38.70 4.40
5643 7285 5.181009 TGACTATCTGGAACAATTGAGCAG 58.819 41.667 13.59 2.71 38.70 4.24
5644 7286 5.164620 TGACTATCTGGAACAATTGAGCA 57.835 39.130 13.59 0.00 38.70 4.26
5707 7349 1.305381 CCTCCACTCCTCGGGTTCT 60.305 63.158 0.00 0.00 0.00 3.01
5985 7633 1.271102 TCATTACCAAACCAAAGCCGC 59.729 47.619 0.00 0.00 0.00 6.53
5987 7635 2.897326 ACCTCATTACCAAACCAAAGCC 59.103 45.455 0.00 0.00 0.00 4.35
6021 7669 6.777213 TCTAGTTTGGCCAAGTTTGTAAAA 57.223 33.333 19.48 0.00 0.00 1.52
6041 7689 2.974794 ACCTGTATCATGCTGCCATCTA 59.025 45.455 0.00 0.00 0.00 1.98
6058 7706 6.964934 GCAAACCATTAGACGTTATAAACCTG 59.035 38.462 0.00 0.00 0.00 4.00
6060 7708 6.094464 AGGCAAACCATTAGACGTTATAAACC 59.906 38.462 0.00 0.00 39.06 3.27
6069 7717 2.811431 TGTTCAGGCAAACCATTAGACG 59.189 45.455 1.06 0.00 39.06 4.18
6071 7719 6.183360 ACAAATTGTTCAGGCAAACCATTAGA 60.183 34.615 0.00 0.00 39.06 2.10
6098 7746 1.139989 ACATGCGAACTGAAGACACG 58.860 50.000 0.00 0.00 0.00 4.49
6106 7754 3.254060 ACAGCTAACTACATGCGAACTG 58.746 45.455 0.00 0.00 0.00 3.16
6146 7795 6.218019 CAGGCAGAGAGAGATTTATCTTCAG 58.782 44.000 0.00 0.00 37.25 3.02
6148 7797 5.511202 CCCAGGCAGAGAGAGATTTATCTTC 60.511 48.000 0.00 0.00 37.25 2.87
6170 7819 5.239525 GTGTTGGATGCATCTTAGAATACCC 59.760 44.000 25.28 6.72 0.00 3.69
6173 7822 7.936496 TTTGTGTTGGATGCATCTTAGAATA 57.064 32.000 25.28 9.47 0.00 1.75
6178 7827 6.343716 ACAATTTGTGTTGGATGCATCTTA 57.656 33.333 25.28 12.71 37.01 2.10
6200 7849 9.233232 GTTTAGTAATATTGCAATGGCTGTAAC 57.767 33.333 22.27 12.96 41.91 2.50
6206 7855 8.402472 TGTACTGTTTAGTAATATTGCAATGGC 58.598 33.333 22.27 8.88 40.89 4.40
6212 7861 8.188531 TCCGTTGTACTGTTTAGTAATATTGC 57.811 34.615 0.00 0.00 40.89 3.56
6272 7921 3.955650 ACAGTACAATCTAACGGCTGT 57.044 42.857 0.00 0.00 0.00 4.40
6302 7951 2.766263 AGCGGGATGACTTGACAATCTA 59.234 45.455 0.00 0.00 0.00 1.98
6348 7997 1.933853 GACGAACATATGGAGTGGCAC 59.066 52.381 10.29 10.29 0.00 5.01
6361 8010 2.238646 AGAATATTGGGCTGGACGAACA 59.761 45.455 0.00 0.00 0.00 3.18
6377 8026 1.678728 CGGAGCAGCAACCCAAGAATA 60.679 52.381 0.00 0.00 0.00 1.75
6387 8036 0.944311 GTCGTTCTTCGGAGCAGCAA 60.944 55.000 0.00 0.00 40.32 3.91
6433 8082 3.376859 CAGCGGCTTATGTGGTCAAAATA 59.623 43.478 0.00 0.00 0.00 1.40
6456 8105 3.002791 CGAAATCAGGCTTTACAGAGCA 58.997 45.455 0.00 0.00 44.49 4.26
6457 8106 3.003480 ACGAAATCAGGCTTTACAGAGC 58.997 45.455 0.00 0.00 41.96 4.09
6458 8107 4.670221 GCAACGAAATCAGGCTTTACAGAG 60.670 45.833 0.00 0.00 0.00 3.35
6459 8108 3.188460 GCAACGAAATCAGGCTTTACAGA 59.812 43.478 0.00 0.00 0.00 3.41
6460 8109 3.492313 GCAACGAAATCAGGCTTTACAG 58.508 45.455 0.00 0.00 0.00 2.74
6461 8110 2.227865 GGCAACGAAATCAGGCTTTACA 59.772 45.455 0.00 0.00 0.00 2.41
6462 8111 2.863739 GGCAACGAAATCAGGCTTTAC 58.136 47.619 0.00 0.00 0.00 2.01
6504 9768 6.445357 AAGAAACGAAGCAAAAGGAAGTAA 57.555 33.333 0.00 0.00 0.00 2.24
6517 9781 5.388890 CGAAGTCCAGATGAAAGAAACGAAG 60.389 44.000 0.00 0.00 0.00 3.79
6647 9915 0.813184 AGAGCAATTCGCACCATTGG 59.187 50.000 0.00 0.00 46.13 3.16
6733 10024 5.191426 CCAATCAGATTGTGGAGACAGATT 58.809 41.667 19.79 0.00 44.46 2.40
6834 10125 0.035317 TGGAGCAGCATGAAACTCGT 59.965 50.000 0.00 0.00 39.69 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.