Multiple sequence alignment - TraesCS7B01G265300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G265300 chr7B 100.000 4174 0 0 1 4174 487799446 487803619 0.000000e+00 7709.0
1 TraesCS7B01G265300 chr7B 74.317 915 166 48 2136 3032 487220987 487221850 1.450000e-84 324.0
2 TraesCS7B01G265300 chr7B 98.649 74 1 0 3461 3534 487802834 487802907 9.420000e-27 132.0
3 TraesCS7B01G265300 chr7B 98.649 74 1 0 3389 3462 487802906 487802979 9.420000e-27 132.0
4 TraesCS7B01G265300 chr7D 96.047 1366 36 7 687 2037 463895270 463893908 0.000000e+00 2207.0
5 TraesCS7B01G265300 chr7D 94.469 1338 52 9 2131 3462 463893838 463892517 0.000000e+00 2041.0
6 TraesCS7B01G265300 chr7D 95.833 624 24 1 3553 4174 463892527 463891904 0.000000e+00 1007.0
7 TraesCS7B01G265300 chr7D 74.919 929 166 47 2136 3047 463962443 463961565 3.070000e-96 363.0
8 TraesCS7B01G265300 chr7A 91.590 1296 53 13 2121 3395 536508099 536509359 0.000000e+00 1738.0
9 TraesCS7B01G265300 chr7A 91.471 1149 71 10 936 2068 536506921 536508058 0.000000e+00 1554.0
10 TraesCS7B01G265300 chr7A 89.244 595 29 13 3587 4174 536509372 536509938 0.000000e+00 712.0
11 TraesCS7B01G265300 chr7A 82.609 667 106 8 13 675 523625413 523626073 7.780000e-162 580.0
12 TraesCS7B01G265300 chr7A 74.945 914 162 47 2136 3032 536124245 536125108 1.430000e-94 357.0
13 TraesCS7B01G265300 chr7A 88.686 274 17 3 687 947 536506469 536506741 5.210000e-84 322.0
14 TraesCS7B01G265300 chrUn 90.816 686 61 2 1 685 87961506 87960822 0.000000e+00 917.0
15 TraesCS7B01G265300 chr5B 89.229 687 66 7 1 685 544810832 544810152 0.000000e+00 852.0
16 TraesCS7B01G265300 chr5B 80.987 689 126 5 1 687 485452152 485452837 3.670000e-150 542.0
17 TraesCS7B01G265300 chr6D 82.011 706 101 14 1 681 428549649 428548945 1.010000e-160 577.0
18 TraesCS7B01G265300 chr2D 81.304 690 114 12 1 687 484042483 484043160 2.840000e-151 545.0
19 TraesCS7B01G265300 chr5A 80.897 691 118 13 1 687 632909562 632908882 2.210000e-147 532.0
20 TraesCS7B01G265300 chr4D 81.469 599 101 9 91 687 296720884 296721474 2.260000e-132 483.0
21 TraesCS7B01G265300 chr5D 82.430 535 91 3 154 687 360376049 360376581 8.170000e-127 464.0
22 TraesCS7B01G265300 chr1D 84.116 447 56 11 245 685 253195818 253196255 6.450000e-113 418.0
23 TraesCS7B01G265300 chr2B 75.787 413 69 12 4 415 682216986 682217368 3.320000e-41 180.0
24 TraesCS7B01G265300 chr2B 94.340 53 3 0 3835 3887 30133312 30133364 9.620000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G265300 chr7B 487799446 487803619 4173 False 2657.666667 7709 99.099333 1 4174 3 chr7B.!!$F2 4173
1 TraesCS7B01G265300 chr7B 487220987 487221850 863 False 324.000000 324 74.317000 2136 3032 1 chr7B.!!$F1 896
2 TraesCS7B01G265300 chr7D 463891904 463895270 3366 True 1751.666667 2207 95.449667 687 4174 3 chr7D.!!$R2 3487
3 TraesCS7B01G265300 chr7D 463961565 463962443 878 True 363.000000 363 74.919000 2136 3047 1 chr7D.!!$R1 911
4 TraesCS7B01G265300 chr7A 536506469 536509938 3469 False 1081.500000 1738 90.247750 687 4174 4 chr7A.!!$F3 3487
5 TraesCS7B01G265300 chr7A 523625413 523626073 660 False 580.000000 580 82.609000 13 675 1 chr7A.!!$F1 662
6 TraesCS7B01G265300 chr7A 536124245 536125108 863 False 357.000000 357 74.945000 2136 3032 1 chr7A.!!$F2 896
7 TraesCS7B01G265300 chrUn 87960822 87961506 684 True 917.000000 917 90.816000 1 685 1 chrUn.!!$R1 684
8 TraesCS7B01G265300 chr5B 544810152 544810832 680 True 852.000000 852 89.229000 1 685 1 chr5B.!!$R1 684
9 TraesCS7B01G265300 chr5B 485452152 485452837 685 False 542.000000 542 80.987000 1 687 1 chr5B.!!$F1 686
10 TraesCS7B01G265300 chr6D 428548945 428549649 704 True 577.000000 577 82.011000 1 681 1 chr6D.!!$R1 680
11 TraesCS7B01G265300 chr2D 484042483 484043160 677 False 545.000000 545 81.304000 1 687 1 chr2D.!!$F1 686
12 TraesCS7B01G265300 chr5A 632908882 632909562 680 True 532.000000 532 80.897000 1 687 1 chr5A.!!$R1 686
13 TraesCS7B01G265300 chr4D 296720884 296721474 590 False 483.000000 483 81.469000 91 687 1 chr4D.!!$F1 596
14 TraesCS7B01G265300 chr5D 360376049 360376581 532 False 464.000000 464 82.430000 154 687 1 chr5D.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 577 0.528924 TCGGACATTCGGTACCACTG 59.471 55.0 13.54 8.19 0.00 3.66 F
1769 2024 0.103208 AGACGATCCTCATCAACGGC 59.897 55.0 0.00 0.00 0.00 5.68 F
1770 2025 0.179111 GACGATCCTCATCAACGGCA 60.179 55.0 0.00 0.00 31.98 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 2477 0.108963 AGTAGCTCTCGCCGGAGTAT 59.891 55.0 5.05 0.0 41.26 2.12 R
3080 3359 0.107508 CGCACATCATGGTCTCCCTT 60.108 55.0 0.00 0.0 0.00 3.95 R
3575 3875 0.838122 ACCCTGGTGCTGAGCTAACT 60.838 55.0 5.83 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 210 1.368850 GCAGGTGTTGTTCGCGAAC 60.369 57.895 38.12 38.12 41.50 3.95
261 263 4.147449 CGGGTCTCAGCGGCATGA 62.147 66.667 1.45 2.37 0.00 3.07
371 376 4.530857 CCGGACAGGGTCGATGCC 62.531 72.222 0.00 0.00 35.97 4.40
394 399 3.007506 TCGGTACAGCTTTGAAGATGGAA 59.992 43.478 12.93 0.00 46.19 3.53
450 477 4.675029 GGACCGGTGTGTGACCCG 62.675 72.222 14.63 0.00 42.62 5.28
508 536 2.092968 AGATGCTAGGATTTGGTGCGAA 60.093 45.455 0.00 0.00 0.00 4.70
515 544 5.348997 GCTAGGATTTGGTGCGAAGTATATC 59.651 44.000 0.00 0.00 0.00 1.63
546 577 0.528924 TCGGACATTCGGTACCACTG 59.471 55.000 13.54 8.19 0.00 3.66
554 585 1.262417 TCGGTACCACTGCATCAAGA 58.738 50.000 13.54 0.00 0.00 3.02
653 684 7.192913 TGTGAATAATTAATAAAGTGGCTGCG 58.807 34.615 0.00 0.00 0.00 5.18
659 690 1.176527 ATAAAGTGGCTGCGTGCATT 58.823 45.000 0.00 0.00 45.15 3.56
816 856 9.694137 AACTACAGATAGAGTTACTTGTTGTTC 57.306 33.333 7.68 0.00 34.13 3.18
1062 1307 1.521450 ATCTGCTGCTGTGTTGCACC 61.521 55.000 0.00 0.00 38.12 5.01
1075 1320 2.747855 GCACCTTTCTCCTGGCCG 60.748 66.667 0.00 0.00 0.00 6.13
1076 1321 2.747855 CACCTTTCTCCTGGCCGC 60.748 66.667 0.00 0.00 0.00 6.53
1269 1514 1.448540 GACCCTCAGCATCACCGTG 60.449 63.158 0.00 0.00 0.00 4.94
1287 1532 0.455410 TGAACAACAAGCTGCACACC 59.545 50.000 1.02 0.00 0.00 4.16
1477 1732 3.691342 CCGGGCACGTGGAGAAGA 61.691 66.667 18.88 0.00 38.78 2.87
1489 1744 1.978580 TGGAGAAGACCCAAGGAACTC 59.021 52.381 0.00 0.00 38.49 3.01
1769 2024 0.103208 AGACGATCCTCATCAACGGC 59.897 55.000 0.00 0.00 0.00 5.68
1770 2025 0.179111 GACGATCCTCATCAACGGCA 60.179 55.000 0.00 0.00 31.98 5.69
1797 2052 4.334118 ACGACTGCATGCTGGGCA 62.334 61.111 25.87 1.91 44.86 5.36
1837 2092 2.741985 CATCGACAGGCACGCCAA 60.742 61.111 11.35 0.00 38.92 4.52
1872 2127 4.591399 AGCAGGCCAAGCTGTGCA 62.591 61.111 20.42 0.00 41.61 4.57
1874 2129 3.371063 CAGGCCAAGCTGTGCAGG 61.371 66.667 5.01 0.00 0.00 4.85
2006 2261 1.190833 CCAGCACCACCTCACTCTCT 61.191 60.000 0.00 0.00 0.00 3.10
2009 2264 1.825281 GCACCACCTCACTCTCTGCT 61.825 60.000 0.00 0.00 0.00 4.24
2045 2300 4.760715 GTCCAAGGGGTAAGAAAGAAAGAC 59.239 45.833 0.00 0.00 34.93 3.01
2046 2301 4.414182 TCCAAGGGGTAAGAAAGAAAGACA 59.586 41.667 0.00 0.00 34.93 3.41
2049 2304 4.726583 AGGGGTAAGAAAGAAAGACAACC 58.273 43.478 0.00 0.00 0.00 3.77
2050 2305 4.167307 AGGGGTAAGAAAGAAAGACAACCA 59.833 41.667 0.00 0.00 0.00 3.67
2051 2306 5.077564 GGGGTAAGAAAGAAAGACAACCAT 58.922 41.667 0.00 0.00 0.00 3.55
2054 2309 7.145985 GGGTAAGAAAGAAAGACAACCATTTC 58.854 38.462 0.00 0.00 35.99 2.17
2055 2310 7.014326 GGGTAAGAAAGAAAGACAACCATTTCT 59.986 37.037 0.00 0.00 45.35 2.52
2063 2318 7.795047 AGAAAGACAACCATTTCTTTTTCCAT 58.205 30.769 0.00 0.00 41.77 3.41
2068 2323 8.267183 AGACAACCATTTCTTTTTCCATTCTTT 58.733 29.630 0.00 0.00 0.00 2.52
2069 2324 8.806429 ACAACCATTTCTTTTTCCATTCTTTT 57.194 26.923 0.00 0.00 0.00 2.27
2070 2325 9.241919 ACAACCATTTCTTTTTCCATTCTTTTT 57.758 25.926 0.00 0.00 0.00 1.94
2096 2351 9.942850 TTTTTGAACTTCTTTTTCCATTCTTCT 57.057 25.926 0.00 0.00 0.00 2.85
2097 2352 9.942850 TTTTGAACTTCTTTTTCCATTCTTCTT 57.057 25.926 0.00 0.00 0.00 2.52
2098 2353 9.586435 TTTGAACTTCTTTTTCCATTCTTCTTC 57.414 29.630 0.00 0.00 0.00 2.87
2099 2354 8.292444 TGAACTTCTTTTTCCATTCTTCTTCA 57.708 30.769 0.00 0.00 0.00 3.02
2111 2366 8.553459 TCCATTCTTCTTCAGTGAGAAATTAC 57.447 34.615 0.00 0.00 35.38 1.89
2113 2368 9.007901 CCATTCTTCTTCAGTGAGAAATTACTT 57.992 33.333 0.00 0.00 35.38 2.24
2129 2399 6.599986 AATTACTTATTGATGGTGGGGGTA 57.400 37.500 0.00 0.00 0.00 3.69
2207 2477 2.422303 GGTCCCCGACATCGACATA 58.578 57.895 2.09 0.00 43.02 2.29
2240 2510 1.595993 GCTACTCCGTGCTCCTCACA 61.596 60.000 0.00 0.00 45.92 3.58
2507 2780 1.515736 GGTGAACCGGACGATCGTC 60.516 63.158 34.70 34.70 43.87 4.20
3087 3366 2.599281 TCGACGTGCCAAGGGAGA 60.599 61.111 0.00 0.00 0.00 3.71
3114 3393 4.530857 GCGGGGTGATCAGGACGG 62.531 72.222 12.82 5.16 0.00 4.79
3198 3492 1.675310 CCTCGCATGCCTGTTCCAA 60.675 57.895 13.15 0.00 0.00 3.53
3289 3583 7.721402 TCAGTAGTTGGCAAATGTAAAATGTT 58.279 30.769 10.91 0.00 0.00 2.71
3297 3591 7.692088 TGGCAAATGTAAAATGTTTTTCACTG 58.308 30.769 0.00 1.65 31.76 3.66
3364 3660 5.463286 TGCTTTCTGATAAACGTCGTCTTA 58.537 37.500 0.00 0.58 0.00 2.10
3365 3661 5.344128 TGCTTTCTGATAAACGTCGTCTTAC 59.656 40.000 0.00 0.00 0.00 2.34
3405 3705 6.427547 TGTTCTGAAATTTTCATTGATTGGCC 59.572 34.615 12.04 0.00 39.30 5.36
3408 3708 7.169591 TCTGAAATTTTCATTGATTGGCCAAT 58.830 30.769 31.09 31.09 39.30 3.16
3410 3710 8.859236 TGAAATTTTCATTGATTGGCCAATTA 57.141 26.923 31.13 24.84 34.77 1.40
3447 3747 9.784531 TCAGGTACATAGTTACTGTACTATACC 57.215 37.037 12.46 14.04 45.31 2.73
3448 3748 9.565090 CAGGTACATAGTTACTGTACTATACCA 57.435 37.037 18.71 0.00 45.31 3.25
3478 3778 8.593945 AGAGAGTAATTTTTATTGATTGGCCA 57.406 30.769 0.00 0.00 0.00 5.36
3479 3779 9.034800 AGAGAGTAATTTTTATTGATTGGCCAA 57.965 29.630 23.00 23.00 0.00 4.52
3480 3780 9.822185 GAGAGTAATTTTTATTGATTGGCCAAT 57.178 29.630 31.09 31.09 39.76 3.16
3497 3797 9.617523 ATTGGCCAATTAATTTTAAGATTCAGG 57.382 29.630 25.73 0.00 0.00 3.86
3498 3798 8.144862 TGGCCAATTAATTTTAAGATTCAGGT 57.855 30.769 0.61 0.00 0.00 4.00
3499 3799 9.261035 TGGCCAATTAATTTTAAGATTCAGGTA 57.739 29.630 0.61 0.00 0.00 3.08
3500 3800 9.529325 GGCCAATTAATTTTAAGATTCAGGTAC 57.471 33.333 0.00 0.00 0.00 3.34
3514 3814 9.476928 AAGATTCAGGTACATAGTTACTGTACT 57.523 33.333 12.46 0.00 45.31 2.73
3519 3819 9.784531 TCAGGTACATAGTTACTGTACTATACC 57.215 37.037 12.46 14.04 45.31 2.73
3520 3820 9.565090 CAGGTACATAGTTACTGTACTATACCA 57.435 37.037 18.71 0.00 45.31 3.25
3535 3835 9.964354 TGTACTATACCAAGTAAGAGAGTAACA 57.036 33.333 0.00 0.00 33.85 2.41
3538 3838 9.176460 ACTATACCAAGTAAGAGAGTAACAGAC 57.824 37.037 0.00 0.00 0.00 3.51
3539 3839 5.725325 ACCAAGTAAGAGAGTAACAGACC 57.275 43.478 0.00 0.00 0.00 3.85
3540 3840 4.527427 ACCAAGTAAGAGAGTAACAGACCC 59.473 45.833 0.00 0.00 0.00 4.46
3541 3841 4.773149 CCAAGTAAGAGAGTAACAGACCCT 59.227 45.833 0.00 0.00 0.00 4.34
3542 3842 5.246429 CCAAGTAAGAGAGTAACAGACCCTT 59.754 44.000 0.00 0.00 0.00 3.95
3543 3843 6.391537 CAAGTAAGAGAGTAACAGACCCTTC 58.608 44.000 0.00 0.00 0.00 3.46
3544 3844 5.642165 AGTAAGAGAGTAACAGACCCTTCA 58.358 41.667 0.00 0.00 0.00 3.02
3545 3845 6.075984 AGTAAGAGAGTAACAGACCCTTCAA 58.924 40.000 0.00 0.00 0.00 2.69
3546 3846 5.888982 AAGAGAGTAACAGACCCTTCAAA 57.111 39.130 0.00 0.00 0.00 2.69
3547 3847 5.888982 AGAGAGTAACAGACCCTTCAAAA 57.111 39.130 0.00 0.00 0.00 2.44
3548 3848 6.248569 AGAGAGTAACAGACCCTTCAAAAA 57.751 37.500 0.00 0.00 0.00 1.94
3575 3875 4.579454 AGAGAGTAACAAACAGTACGCA 57.421 40.909 0.00 0.00 0.00 5.24
3576 3876 4.547532 AGAGAGTAACAAACAGTACGCAG 58.452 43.478 0.00 0.00 0.00 5.18
3582 3882 3.107642 ACAAACAGTACGCAGTTAGCT 57.892 42.857 0.00 0.00 37.78 3.32
3588 3888 0.992802 GTACGCAGTTAGCTCAGCAC 59.007 55.000 0.00 0.00 37.78 4.40
3596 3896 1.278127 GTTAGCTCAGCACCAGGGTAA 59.722 52.381 0.00 0.00 0.00 2.85
3785 4088 6.741992 AATCTGCAACGAGTATCAAATTCA 57.258 33.333 0.00 0.00 33.17 2.57
3786 4089 6.741992 ATCTGCAACGAGTATCAAATTCAA 57.258 33.333 0.00 0.00 33.17 2.69
3937 4244 1.029681 AAGAAAACCTTGTGCGGGAC 58.970 50.000 0.00 0.00 32.92 4.46
3947 4254 1.227380 GTGCGGGACATGCTCTAGG 60.227 63.158 0.00 0.00 0.00 3.02
3968 4275 4.161377 AGGAGCAGACAGGAAACTTATCTC 59.839 45.833 0.00 0.00 40.21 2.75
4051 4358 0.664761 CATAGAAGCCAATGGTGCCG 59.335 55.000 0.00 0.00 0.00 5.69
4131 4438 4.276678 TGAAACAAGCTTTGTGATCTCCAG 59.723 41.667 0.00 0.00 44.59 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 2.669229 CACATGCAGTGCCACCGA 60.669 61.111 13.72 0.00 42.15 4.69
108 110 1.298667 GCGCCTCCAAGAAGGGTAA 59.701 57.895 0.00 0.00 36.88 2.85
208 210 4.457496 ATGCCACGCCACTCCTCG 62.457 66.667 0.00 0.00 0.00 4.63
280 282 0.464373 GTCCATCATCACACGCCCAT 60.464 55.000 0.00 0.00 0.00 4.00
371 376 2.932614 CCATCTTCAAAGCTGTACCGAG 59.067 50.000 0.00 0.00 0.00 4.63
450 477 3.741325 AGGCCACATACCTGGACC 58.259 61.111 5.01 0.00 40.83 4.46
492 520 6.587990 CAGATATACTTCGCACCAAATCCTAG 59.412 42.308 0.00 0.00 0.00 3.02
508 536 5.887035 GTCCGAGCCTAATACCAGATATACT 59.113 44.000 0.00 0.00 0.00 2.12
515 544 3.654414 GAATGTCCGAGCCTAATACCAG 58.346 50.000 0.00 0.00 0.00 4.00
546 577 3.366883 CGCTACTCCTATCCTCTTGATGC 60.367 52.174 0.00 0.00 34.76 3.91
554 585 1.495574 ACCTGTCGCTACTCCTATCCT 59.504 52.381 0.00 0.00 0.00 3.24
582 613 2.573462 AGTAAGCTTGAAGCCATCCTCA 59.427 45.455 14.45 0.00 43.77 3.86
587 618 3.960571 ACATCAGTAAGCTTGAAGCCAT 58.039 40.909 14.45 5.92 43.77 4.40
659 690 2.895680 GGCCTCTGCATCTCGACA 59.104 61.111 0.00 0.00 40.13 4.35
1129 1374 1.139989 CACGTCATGTTCTGCTTCGT 58.860 50.000 0.00 0.00 0.00 3.85
1269 1514 0.592247 CGGTGTGCAGCTTGTTGTTC 60.592 55.000 0.00 0.00 0.00 3.18
1287 1532 3.083349 TGGATCACCAGCCCCTCG 61.083 66.667 0.00 0.00 41.77 4.63
1477 1732 2.509964 AGTTCAGTTGAGTTCCTTGGGT 59.490 45.455 0.00 0.00 0.00 4.51
1489 1744 5.519927 GGACAAATTTGGTTCAGTTCAGTTG 59.480 40.000 21.74 0.00 0.00 3.16
1769 2024 2.433838 CAGTCGTGCTGCCCTCTG 60.434 66.667 0.00 0.00 38.52 3.35
1779 2034 3.807538 GCCCAGCATGCAGTCGTG 61.808 66.667 21.98 8.77 31.97 4.35
1797 2052 2.732658 GTGGAACCTCGTGACCGT 59.267 61.111 0.00 0.00 35.01 4.83
1837 2092 1.821061 CTTGTCCCTCACGCAGGTCT 61.821 60.000 0.53 0.00 41.51 3.85
1852 2107 2.196776 ACAGCTTGGCCTGCTTGT 59.803 55.556 18.75 16.49 38.92 3.16
1857 2112 3.371063 CCTGCACAGCTTGGCCTG 61.371 66.667 3.32 0.00 38.78 4.85
1872 2127 2.363147 GCACCTCTCCTCGTCCCT 60.363 66.667 0.00 0.00 0.00 4.20
1874 2129 2.363147 AGGCACCTCTCCTCGTCC 60.363 66.667 0.00 0.00 0.00 4.79
2006 2261 1.300931 GACCTGCACGTTGAGAGCA 60.301 57.895 0.00 0.00 43.97 4.26
2009 2264 0.249868 CTTGGACCTGCACGTTGAGA 60.250 55.000 0.00 0.00 0.00 3.27
2070 2325 9.942850 AGAAGAATGGAAAAAGAAGTTCAAAAA 57.057 25.926 5.50 0.00 0.00 1.94
2072 2327 9.586435 GAAGAAGAATGGAAAAAGAAGTTCAAA 57.414 29.630 5.50 0.00 0.00 2.69
2073 2328 8.748412 TGAAGAAGAATGGAAAAAGAAGTTCAA 58.252 29.630 5.50 0.00 0.00 2.69
2074 2329 8.292444 TGAAGAAGAATGGAAAAAGAAGTTCA 57.708 30.769 5.50 0.00 0.00 3.18
2075 2330 8.409371 ACTGAAGAAGAATGGAAAAAGAAGTTC 58.591 33.333 0.00 0.00 0.00 3.01
2076 2331 8.193438 CACTGAAGAAGAATGGAAAAAGAAGTT 58.807 33.333 0.00 0.00 0.00 2.66
2077 2332 7.557719 TCACTGAAGAAGAATGGAAAAAGAAGT 59.442 33.333 0.00 0.00 0.00 3.01
2078 2333 7.934457 TCACTGAAGAAGAATGGAAAAAGAAG 58.066 34.615 0.00 0.00 0.00 2.85
2079 2334 7.775093 TCTCACTGAAGAAGAATGGAAAAAGAA 59.225 33.333 0.00 0.00 0.00 2.52
2080 2335 7.282585 TCTCACTGAAGAAGAATGGAAAAAGA 58.717 34.615 0.00 0.00 0.00 2.52
2081 2336 7.502120 TCTCACTGAAGAAGAATGGAAAAAG 57.498 36.000 0.00 0.00 0.00 2.27
2082 2337 7.880160 TTCTCACTGAAGAAGAATGGAAAAA 57.120 32.000 0.00 0.00 31.71 1.94
2083 2338 7.880160 TTTCTCACTGAAGAAGAATGGAAAA 57.120 32.000 0.00 0.00 36.66 2.29
2085 2340 9.003658 GTAATTTCTCACTGAAGAAGAATGGAA 57.996 33.333 0.00 0.00 36.66 3.53
2086 2341 8.378565 AGTAATTTCTCACTGAAGAAGAATGGA 58.621 33.333 0.00 0.00 36.66 3.41
2096 2351 9.739276 ACCATCAATAAGTAATTTCTCACTGAA 57.261 29.630 0.00 0.00 0.00 3.02
2097 2352 9.166173 CACCATCAATAAGTAATTTCTCACTGA 57.834 33.333 0.00 0.00 0.00 3.41
2098 2353 8.400947 CCACCATCAATAAGTAATTTCTCACTG 58.599 37.037 0.00 0.00 0.00 3.66
2099 2354 7.557719 CCCACCATCAATAAGTAATTTCTCACT 59.442 37.037 0.00 0.00 0.00 3.41
2111 2366 6.382570 TCAAAATTACCCCCACCATCAATAAG 59.617 38.462 0.00 0.00 0.00 1.73
2113 2368 5.843469 TCAAAATTACCCCCACCATCAATA 58.157 37.500 0.00 0.00 0.00 1.90
2114 2369 4.693420 TCAAAATTACCCCCACCATCAAT 58.307 39.130 0.00 0.00 0.00 2.57
2115 2370 4.133526 TCAAAATTACCCCCACCATCAA 57.866 40.909 0.00 0.00 0.00 2.57
2117 2372 3.118775 GCTTCAAAATTACCCCCACCATC 60.119 47.826 0.00 0.00 0.00 3.51
2118 2373 2.837591 GCTTCAAAATTACCCCCACCAT 59.162 45.455 0.00 0.00 0.00 3.55
2119 2374 2.252714 GCTTCAAAATTACCCCCACCA 58.747 47.619 0.00 0.00 0.00 4.17
2129 2399 2.032030 CGTCAGGTCGTGCTTCAAAATT 60.032 45.455 0.00 0.00 0.00 1.82
2207 2477 0.108963 AGTAGCTCTCGCCGGAGTAT 59.891 55.000 5.05 0.00 41.26 2.12
2240 2510 2.898343 GTCGGCGTGTGGTTGGTT 60.898 61.111 6.85 0.00 0.00 3.67
2422 2695 2.911484 CCTTGATCCTGTAGGTGAAGC 58.089 52.381 0.00 0.00 36.34 3.86
2430 2703 1.002403 TCCGGGCCTTGATCCTGTA 59.998 57.895 0.84 0.00 0.00 2.74
2507 2780 1.499056 GGTCTGCGTGTTGAGCATG 59.501 57.895 0.00 0.00 44.26 4.06
2669 2942 1.585521 CGGCAGGTCGATGTCGTAC 60.586 63.158 4.90 0.24 43.12 3.67
3041 3320 2.933287 ATGTGGGCCCCTTCGACA 60.933 61.111 22.27 17.49 0.00 4.35
3080 3359 0.107508 CGCACATCATGGTCTCCCTT 60.108 55.000 0.00 0.00 0.00 3.95
3087 3366 1.925285 ATCACCCCGCACATCATGGT 61.925 55.000 0.00 0.00 0.00 3.55
3123 3402 2.058595 GCTTAGCGGGAGTCAGGGA 61.059 63.158 0.00 0.00 0.00 4.20
3198 3492 4.191544 CTGACAAATGACCACGGATACAT 58.808 43.478 0.00 0.00 0.00 2.29
3274 3568 7.164008 GTGCAGTGAAAAACATTTTACATTTGC 59.836 33.333 0.00 0.00 0.00 3.68
3279 3573 7.763528 AGAATGTGCAGTGAAAAACATTTTACA 59.236 29.630 12.33 0.00 41.91 2.41
3289 3583 4.198530 TCAGTGAGAATGTGCAGTGAAAA 58.801 39.130 0.00 0.00 40.44 2.29
3297 3591 9.846248 ATAAAACTTTATTCAGTGAGAATGTGC 57.154 29.630 0.00 0.00 46.24 4.57
3337 3633 3.673338 CGACGTTTATCAGAAAGCAGACA 59.327 43.478 0.00 0.00 0.00 3.41
3452 3752 9.034800 TGGCCAATCAATAAAAATTACTCTCTT 57.965 29.630 0.61 0.00 0.00 2.85
3453 3753 8.593945 TGGCCAATCAATAAAAATTACTCTCT 57.406 30.769 0.61 0.00 0.00 3.10
3454 3754 9.822185 ATTGGCCAATCAATAAAAATTACTCTC 57.178 29.630 25.73 0.00 35.78 3.20
3471 3771 9.617523 CCTGAATCTTAAAATTAATTGGCCAAT 57.382 29.630 25.73 25.73 0.00 3.16
3472 3772 8.601546 ACCTGAATCTTAAAATTAATTGGCCAA 58.398 29.630 23.00 23.00 0.00 4.52
3473 3773 8.144862 ACCTGAATCTTAAAATTAATTGGCCA 57.855 30.769 0.00 0.00 0.00 5.36
3474 3774 9.529325 GTACCTGAATCTTAAAATTAATTGGCC 57.471 33.333 0.39 0.00 0.00 5.36
3509 3809 9.964354 TGTTACTCTCTTACTTGGTATAGTACA 57.036 33.333 0.00 0.00 30.62 2.90
3512 3812 9.176460 GTCTGTTACTCTCTTACTTGGTATAGT 57.824 37.037 0.00 0.00 0.00 2.12
3513 3813 8.623030 GGTCTGTTACTCTCTTACTTGGTATAG 58.377 40.741 0.00 0.00 0.00 1.31
3514 3814 7.559170 GGGTCTGTTACTCTCTTACTTGGTATA 59.441 40.741 0.00 0.00 0.00 1.47
3515 3815 6.380560 GGGTCTGTTACTCTCTTACTTGGTAT 59.619 42.308 0.00 0.00 0.00 2.73
3516 3816 5.713861 GGGTCTGTTACTCTCTTACTTGGTA 59.286 44.000 0.00 0.00 0.00 3.25
3517 3817 4.527427 GGGTCTGTTACTCTCTTACTTGGT 59.473 45.833 0.00 0.00 0.00 3.67
3518 3818 4.773149 AGGGTCTGTTACTCTCTTACTTGG 59.227 45.833 0.00 0.00 31.02 3.61
3519 3819 5.986501 AGGGTCTGTTACTCTCTTACTTG 57.013 43.478 0.00 0.00 31.02 3.16
3520 3820 6.075984 TGAAGGGTCTGTTACTCTCTTACTT 58.924 40.000 0.00 0.00 38.26 2.24
3521 3821 5.642165 TGAAGGGTCTGTTACTCTCTTACT 58.358 41.667 0.00 0.00 38.26 2.24
3522 3822 5.979288 TGAAGGGTCTGTTACTCTCTTAC 57.021 43.478 0.00 0.00 38.26 2.34
3523 3823 6.989155 TTTGAAGGGTCTGTTACTCTCTTA 57.011 37.500 0.00 0.00 38.26 2.10
3524 3824 5.888982 TTTGAAGGGTCTGTTACTCTCTT 57.111 39.130 0.00 0.00 38.26 2.85
3525 3825 5.888982 TTTTGAAGGGTCTGTTACTCTCT 57.111 39.130 0.00 0.00 38.26 3.10
3548 3848 8.493547 GCGTACTGTTTGTTACTCTCTTATTTT 58.506 33.333 0.00 0.00 0.00 1.82
3549 3849 7.654520 TGCGTACTGTTTGTTACTCTCTTATTT 59.345 33.333 0.00 0.00 0.00 1.40
3550 3850 7.149973 TGCGTACTGTTTGTTACTCTCTTATT 58.850 34.615 0.00 0.00 0.00 1.40
3551 3851 6.684686 TGCGTACTGTTTGTTACTCTCTTAT 58.315 36.000 0.00 0.00 0.00 1.73
3575 3875 0.838122 ACCCTGGTGCTGAGCTAACT 60.838 55.000 5.83 0.00 0.00 2.24
3576 3876 0.902531 TACCCTGGTGCTGAGCTAAC 59.097 55.000 5.83 0.00 0.00 2.34
3582 3882 2.673258 TCGATATTACCCTGGTGCTGA 58.327 47.619 0.00 0.00 0.00 4.26
3588 3888 7.928307 ATGATTTCATTCGATATTACCCTGG 57.072 36.000 0.00 0.00 31.37 4.45
3758 4061 4.655762 TGATACTCGTTGCAGATTAGCT 57.344 40.909 0.00 0.00 34.99 3.32
3785 4088 4.396166 GGATGTTCACGGATGTTGAAGATT 59.604 41.667 0.00 0.00 0.00 2.40
3786 4089 3.941483 GGATGTTCACGGATGTTGAAGAT 59.059 43.478 0.00 0.00 0.00 2.40
3931 4238 1.365633 CTCCTAGAGCATGTCCCGC 59.634 63.158 0.00 0.00 0.00 6.13
3947 4254 4.109050 CGAGATAAGTTTCCTGTCTGCTC 58.891 47.826 0.00 0.00 0.00 4.26
3968 4275 3.242518 TCGACTGATGTAGCAACTTTCG 58.757 45.455 0.00 0.00 0.00 3.46
4051 4358 0.250513 ATGCCTTCTTCGTCCTGACC 59.749 55.000 0.00 0.00 0.00 4.02
4131 4438 6.591834 TGCTATCTTCTACTTCTTCAACAAGC 59.408 38.462 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.