Multiple sequence alignment - TraesCS7B01G265200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G265200 chr7B 100.000 5636 0 0 1 5636 487217318 487222953 0.000000e+00 10408.0
1 TraesCS7B01G265200 chr7B 74.317 915 166 47 3670 4533 487801581 487802477 1.960000e-84 324.0
2 TraesCS7B01G265200 chr7B 100.000 29 0 0 1149 1177 89891321 89891293 3.000000e-03 54.7
3 TraesCS7B01G265200 chr7D 91.443 2419 127 37 32 2407 463966424 463964043 0.000000e+00 3247.0
4 TraesCS7B01G265200 chr7D 93.688 1806 77 17 3273 5066 463962843 463961063 0.000000e+00 2669.0
5 TraesCS7B01G265200 chr7D 92.515 668 25 10 2403 3060 463963741 463963089 0.000000e+00 933.0
6 TraesCS7B01G265200 chr7D 74.345 916 160 50 3680 4544 463893823 463892932 2.530000e-83 320.0
7 TraesCS7B01G265200 chr7A 89.854 2395 174 37 3272 5635 536123848 536126204 0.000000e+00 3013.0
8 TraesCS7B01G265200 chr7A 89.682 2200 161 36 71 2246 536120545 536122702 0.000000e+00 2745.0
9 TraesCS7B01G265200 chr7A 92.491 799 31 10 2263 3057 536122836 536123609 0.000000e+00 1116.0
10 TraesCS7B01G265200 chr7A 74.514 926 158 50 3674 4548 536508118 536509016 1.170000e-86 331.0
11 TraesCS7B01G265200 chr7A 82.625 259 33 9 2575 2829 736106618 736106868 9.510000e-53 219.0
12 TraesCS7B01G265200 chr7A 82.677 254 32 9 2580 2829 191839904 191839659 1.230000e-51 215.0
13 TraesCS7B01G265200 chr7A 82.550 149 18 6 2029 2177 629142384 629142524 2.130000e-24 124.0
14 TraesCS7B01G265200 chr7A 100.000 30 0 0 32 61 536120420 536120449 7.890000e-04 56.5
15 TraesCS7B01G265200 chr5B 81.688 557 83 14 2263 2814 137657615 137657073 4.010000e-121 446.0
16 TraesCS7B01G265200 chr5B 82.847 274 35 9 2560 2829 485809065 485809330 9.440000e-58 235.0
17 TraesCS7B01G265200 chr5B 91.429 105 9 0 800 904 706370456 706370560 1.640000e-30 145.0
18 TraesCS7B01G265200 chr3B 82.796 465 32 20 3342 3804 805550100 805549682 6.900000e-99 372.0
19 TraesCS7B01G265200 chr3B 85.196 331 21 11 3476 3804 805637499 805637803 1.180000e-81 315.0
20 TraesCS7B01G265200 chr3B 82.447 376 40 11 3722 4089 586144735 586145092 7.090000e-79 305.0
21 TraesCS7B01G265200 chr3B 88.636 88 9 1 2975 3061 805550192 805550105 7.720000e-19 106.0
22 TraesCS7B01G265200 chr3D 83.511 376 35 9 3722 4089 446759287 446759643 5.450000e-85 326.0
23 TraesCS7B01G265200 chrUn 84.592 331 20 14 3476 3804 208959950 208959649 3.300000e-77 300.0
24 TraesCS7B01G265200 chrUn 84.290 331 21 14 3476 3804 197806326 197806627 1.540000e-75 294.0
25 TraesCS7B01G265200 chrUn 84.290 331 20 14 3476 3804 367296742 367296442 1.540000e-75 294.0
26 TraesCS7B01G265200 chrUn 83.988 331 21 14 3476 3804 398557551 398557851 7.140000e-74 289.0
27 TraesCS7B01G265200 chrUn 83.150 273 16 13 3533 3804 400689944 400690187 7.350000e-54 222.0
28 TraesCS7B01G265200 chr1B 81.016 374 49 20 2470 2829 46136956 46137321 1.550000e-70 278.0
29 TraesCS7B01G265200 chr2D 80.294 340 57 5 5299 5631 522936732 522937068 1.210000e-61 248.0
30 TraesCS7B01G265200 chr2A 82.482 274 36 9 2560 2829 159639489 159639224 4.390000e-56 230.0
31 TraesCS7B01G265200 chr6B 82.625 259 33 9 2575 2829 558913979 558913729 9.510000e-53 219.0
32 TraesCS7B01G265200 chr6B 82.143 168 18 8 2022 2188 558914592 558914436 3.540000e-27 134.0
33 TraesCS7B01G265200 chr6B 80.838 167 22 6 2022 2188 149037611 149037767 7.670000e-24 122.0
34 TraesCS7B01G265200 chr6A 82.625 259 33 9 2575 2829 565049207 565048957 9.510000e-53 219.0
35 TraesCS7B01G265200 chr4A 81.200 250 32 10 5394 5636 709110116 709109875 2.680000e-43 187.0
36 TraesCS7B01G265200 chr4A 92.683 41 3 0 5335 5375 606519762 606519802 6.100000e-05 60.2
37 TraesCS7B01G265200 chr3A 80.377 265 36 9 2263 2525 472412893 472412643 2.680000e-43 187.0
38 TraesCS7B01G265200 chr3A 88.722 133 14 1 3958 4089 588626846 588626978 1.620000e-35 161.0
39 TraesCS7B01G265200 chr3A 82.143 168 18 8 2022 2188 472415196 472415040 3.540000e-27 134.0
40 TraesCS7B01G265200 chr4D 78.041 296 48 6 5323 5603 16454865 16455158 2.700000e-38 171.0
41 TraesCS7B01G265200 chr5A 77.899 276 55 6 5235 5506 118696646 118696919 3.490000e-37 167.0
42 TraesCS7B01G265200 chr5A 82.143 168 18 8 2022 2188 4722280 4722436 3.540000e-27 134.0
43 TraesCS7B01G265200 chr4B 82.143 168 18 8 2022 2188 597294749 597294905 3.540000e-27 134.0
44 TraesCS7B01G265200 chr2B 81.548 168 20 7 2022 2188 98127107 98126950 1.650000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G265200 chr7B 487217318 487222953 5635 False 10408.000 10408 100.000000 1 5636 1 chr7B.!!$F1 5635
1 TraesCS7B01G265200 chr7B 487801581 487802477 896 False 324.000 324 74.317000 3670 4533 1 chr7B.!!$F2 863
2 TraesCS7B01G265200 chr7D 463961063 463966424 5361 True 2283.000 3247 92.548667 32 5066 3 chr7D.!!$R2 5034
3 TraesCS7B01G265200 chr7D 463892932 463893823 891 True 320.000 320 74.345000 3680 4544 1 chr7D.!!$R1 864
4 TraesCS7B01G265200 chr7A 536120420 536126204 5784 False 1732.625 3013 93.006750 32 5635 4 chr7A.!!$F4 5603
5 TraesCS7B01G265200 chr7A 536508118 536509016 898 False 331.000 331 74.514000 3674 4548 1 chr7A.!!$F1 874
6 TraesCS7B01G265200 chr5B 137657073 137657615 542 True 446.000 446 81.688000 2263 2814 1 chr5B.!!$R1 551
7 TraesCS7B01G265200 chr3B 805549682 805550192 510 True 239.000 372 85.716000 2975 3804 2 chr3B.!!$R1 829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 1014 1.005630 GCAGGCTTCAGTGTCGACT 60.006 57.895 17.92 0.0 0.00 4.18 F
1271 1383 0.108804 CACGGCGTCAGACAGGTAAT 60.109 55.000 10.85 0.0 0.00 1.89 F
2836 3411 0.180642 ATGCAGAGCAGAGGTGATGG 59.819 55.000 0.00 0.0 43.65 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2165 0.773644 ACTCCCAGTGCCATTTGTCT 59.226 50.0 0.00 0.0 0.00 3.41 R
3070 3649 0.032615 AGCACTGACAAACCCCCAAA 60.033 50.0 0.00 0.0 0.00 3.28 R
4672 5353 0.032515 TGGAGTCGGAGAGGCCATAA 60.033 55.0 5.01 0.0 36.24 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.850752 AATGTTACCTAAAACCTGGAATGG 57.149 37.500 0.00 0.00 0.00 3.16
25 26 5.586155 TGTTACCTAAAACCTGGAATGGA 57.414 39.130 0.00 0.00 0.00 3.41
26 27 5.566469 TGTTACCTAAAACCTGGAATGGAG 58.434 41.667 0.00 0.00 0.00 3.86
27 28 3.739401 ACCTAAAACCTGGAATGGAGG 57.261 47.619 0.00 2.85 36.57 4.30
28 29 2.311841 ACCTAAAACCTGGAATGGAGGG 59.688 50.000 0.00 0.00 34.56 4.30
29 30 2.580783 CCTAAAACCTGGAATGGAGGGA 59.419 50.000 0.00 0.00 34.56 4.20
30 31 2.907458 AAAACCTGGAATGGAGGGAG 57.093 50.000 0.00 0.00 34.56 4.30
92 179 5.074584 TGGATTGCACGTACATAGTTACA 57.925 39.130 0.00 0.00 0.00 2.41
106 193 9.702494 GTACATAGTTACAAGTTACAGGAAGTT 57.298 33.333 0.00 0.00 0.00 2.66
142 229 5.122396 GCAGGTATTGTGTCCAGAAAAGTAG 59.878 44.000 0.00 0.00 0.00 2.57
147 234 3.973657 TGTGTCCAGAAAAGTAGTCGAC 58.026 45.455 7.70 7.70 0.00 4.20
149 236 3.982058 GTGTCCAGAAAAGTAGTCGACAG 59.018 47.826 19.50 0.00 0.00 3.51
150 237 3.887110 TGTCCAGAAAAGTAGTCGACAGA 59.113 43.478 19.50 1.63 0.00 3.41
151 238 4.340097 TGTCCAGAAAAGTAGTCGACAGAA 59.660 41.667 19.50 0.00 0.00 3.02
160 247 3.833070 AGTAGTCGACAGAAGGATGGTTT 59.167 43.478 19.50 0.00 0.00 3.27
182 269 3.255888 TGTACTGTGCGAATGAGAGAACT 59.744 43.478 0.00 0.00 0.00 3.01
183 270 2.953020 ACTGTGCGAATGAGAGAACTC 58.047 47.619 0.00 0.00 42.88 3.01
200 288 6.153510 AGAGAACTCAAAAGGGCAAATAATCC 59.846 38.462 4.64 0.00 0.00 3.01
203 291 4.711846 ACTCAAAAGGGCAAATAATCCTCC 59.288 41.667 0.00 0.00 0.00 4.30
226 314 2.942376 TGTCAAACACATGGACAGTGAC 59.058 45.455 0.00 4.89 40.16 3.67
235 323 3.181445 ACATGGACAGTGACTAAAGGCAA 60.181 43.478 0.00 0.00 0.00 4.52
271 360 8.512138 GGTGTACACATTAACAATTCTAAAGCT 58.488 33.333 26.51 0.00 0.00 3.74
281 370 6.764308 ACAATTCTAAAGCTATGCACACAT 57.236 33.333 0.00 0.00 40.49 3.21
282 371 7.864108 ACAATTCTAAAGCTATGCACACATA 57.136 32.000 0.00 0.00 37.74 2.29
283 372 8.455903 ACAATTCTAAAGCTATGCACACATAT 57.544 30.769 0.00 0.00 38.10 1.78
623 716 5.186996 TGCAGTGGAAAATCAAGAAAGTC 57.813 39.130 0.00 0.00 0.00 3.01
624 717 4.644234 TGCAGTGGAAAATCAAGAAAGTCA 59.356 37.500 0.00 0.00 0.00 3.41
759 860 8.635765 TGAGCTGATCCACTTTTAGTTTATTT 57.364 30.769 0.00 0.00 0.00 1.40
760 861 9.733556 TGAGCTGATCCACTTTTAGTTTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
904 1008 1.584380 GGCTTCAGCAGGCTTCAGTG 61.584 60.000 0.30 0.00 45.03 3.66
908 1012 1.005748 CAGCAGGCTTCAGTGTCGA 60.006 57.895 0.00 0.00 0.00 4.20
910 1014 1.005630 GCAGGCTTCAGTGTCGACT 60.006 57.895 17.92 0.00 0.00 4.18
1269 1381 2.959372 CACGGCGTCAGACAGGTA 59.041 61.111 10.85 0.00 0.00 3.08
1271 1383 0.108804 CACGGCGTCAGACAGGTAAT 60.109 55.000 10.85 0.00 0.00 1.89
1301 1413 1.022982 CAGCATGAGCACACCGTCAT 61.023 55.000 0.00 0.00 45.49 3.06
1315 1427 3.003689 CACCGTCATTGCTTTGTCTCTTT 59.996 43.478 0.00 0.00 0.00 2.52
1322 1434 3.478857 TGCTTTGTCTCTTTCCCGTTA 57.521 42.857 0.00 0.00 0.00 3.18
1327 1439 4.345859 TTGTCTCTTTCCCGTTACATGT 57.654 40.909 2.69 2.69 0.00 3.21
1328 1440 3.921677 TGTCTCTTTCCCGTTACATGTC 58.078 45.455 0.00 0.00 0.00 3.06
1456 1570 4.776322 TGCGCCATCAACCCGGAG 62.776 66.667 0.73 0.00 0.00 4.63
1508 1622 3.487120 AGGTACCTCCACTGTTCAAAC 57.513 47.619 9.21 0.00 39.02 2.93
1509 1623 2.140717 GGTACCTCCACTGTTCAAACG 58.859 52.381 4.06 0.00 35.97 3.60
1513 1627 2.104111 ACCTCCACTGTTCAAACGATCA 59.896 45.455 0.00 0.00 0.00 2.92
1517 1631 3.314080 TCCACTGTTCAAACGATCAAACC 59.686 43.478 0.00 0.00 0.00 3.27
1518 1632 3.315191 CCACTGTTCAAACGATCAAACCT 59.685 43.478 0.00 0.00 0.00 3.50
1519 1633 4.527564 CACTGTTCAAACGATCAAACCTC 58.472 43.478 0.00 0.00 0.00 3.85
1521 1635 3.815401 CTGTTCAAACGATCAAACCTCCT 59.185 43.478 0.00 0.00 0.00 3.69
1523 1637 4.994852 TGTTCAAACGATCAAACCTCCTAG 59.005 41.667 0.00 0.00 0.00 3.02
1524 1638 4.884668 TCAAACGATCAAACCTCCTAGT 57.115 40.909 0.00 0.00 0.00 2.57
1525 1639 4.566004 TCAAACGATCAAACCTCCTAGTG 58.434 43.478 0.00 0.00 0.00 2.74
1526 1640 3.611766 AACGATCAAACCTCCTAGTGG 57.388 47.619 0.00 0.00 0.00 4.00
1527 1641 1.207329 ACGATCAAACCTCCTAGTGGC 59.793 52.381 0.00 0.00 0.00 5.01
1528 1642 1.207089 CGATCAAACCTCCTAGTGGCA 59.793 52.381 0.00 0.00 0.00 4.92
1529 1643 2.633488 GATCAAACCTCCTAGTGGCAC 58.367 52.381 10.29 10.29 0.00 5.01
1530 1644 1.429930 TCAAACCTCCTAGTGGCACA 58.570 50.000 21.41 5.00 0.00 4.57
1547 1661 0.462581 ACACATCATAGCTGGTGCCG 60.463 55.000 0.00 0.00 36.95 5.69
1549 1663 0.541392 ACATCATAGCTGGTGCCGAA 59.459 50.000 0.00 0.00 36.95 4.30
1552 1666 1.737838 TCATAGCTGGTGCCGAAAAG 58.262 50.000 0.00 0.00 40.80 2.27
1577 1691 6.291269 GCTGAAATTAATCGCAACATTAGTGC 60.291 38.462 0.00 0.00 0.00 4.40
1583 1698 3.932545 TCGCAACATTAGTGCCAAAAT 57.067 38.095 0.00 0.00 0.00 1.82
1586 1701 3.423384 CGCAACATTAGTGCCAAAATTGC 60.423 43.478 0.00 0.00 38.22 3.56
1605 1720 3.981211 TGCTGCAAAACTTCCTCATTTC 58.019 40.909 0.00 0.00 0.00 2.17
1620 1735 4.160439 CCTCATTTCCCCCTTCTTTTTAGC 59.840 45.833 0.00 0.00 0.00 3.09
1632 1747 6.433766 CCTTCTTTTTAGCTTGACTTGTGAG 58.566 40.000 0.00 0.00 0.00 3.51
1650 1765 1.072331 GAGTTGTGACTGACCCATGGT 59.928 52.381 11.73 0.00 35.60 3.55
1687 1802 2.326428 CCGGGGACATACTTCTACCAT 58.674 52.381 0.00 0.00 0.00 3.55
1690 1805 2.224548 GGGGACATACTTCTACCATGGC 60.225 54.545 13.04 0.00 0.00 4.40
1735 1850 1.522569 GCTGTACGGCTCCCTGATT 59.477 57.895 19.72 0.00 0.00 2.57
1816 1931 0.963856 TCAGCGACTGGTACCACGAT 60.964 55.000 24.57 17.66 31.51 3.73
1922 2037 8.028354 CACTGATGTTCTTGCTATATCTCTAGG 58.972 40.741 0.00 0.00 0.00 3.02
1979 2096 4.715534 TGGTGGACAAAAGGTATCTTGA 57.284 40.909 0.00 0.00 32.75 3.02
2027 2144 5.827797 AGTCCAAAATGCACTCTTTCAAGTA 59.172 36.000 0.00 0.00 0.00 2.24
2067 2184 0.773644 AGACAAATGGCACTGGGAGT 59.226 50.000 0.00 0.00 0.00 3.85
2069 2186 1.963515 GACAAATGGCACTGGGAGTTT 59.036 47.619 0.00 0.00 0.00 2.66
2103 2220 5.641209 CCATCCGATTTAGATGATCTTGGAC 59.359 44.000 0.00 0.00 43.15 4.02
2115 2232 1.538047 TCTTGGACAGAGCAATTGGC 58.462 50.000 7.72 0.00 45.30 4.52
2200 2318 2.731976 GGCGATTTAGATGATCACGGAC 59.268 50.000 0.00 0.00 0.00 4.79
2218 2336 6.861055 TCACGGACAGAGCAATTTAAAATTTC 59.139 34.615 0.00 0.00 0.00 2.17
2246 2364 1.921982 ATTGTTGGTGCAGCATACCA 58.078 45.000 20.91 13.75 46.01 3.25
2250 2368 3.428687 TGGTGCAGCATACCAACAA 57.571 47.368 15.99 0.00 44.79 2.83
2251 2369 1.921982 TGGTGCAGCATACCAACAAT 58.078 45.000 15.99 0.00 44.79 2.71
2254 2372 2.230992 GGTGCAGCATACCAACAATTGA 59.769 45.455 13.59 0.00 38.12 2.57
2256 2374 4.497300 GTGCAGCATACCAACAATTGAAT 58.503 39.130 13.59 0.00 0.00 2.57
2257 2375 5.394005 GGTGCAGCATACCAACAATTGAATA 60.394 40.000 13.59 0.00 38.12 1.75
2258 2376 6.275335 GTGCAGCATACCAACAATTGAATAT 58.725 36.000 13.59 1.50 0.00 1.28
2259 2377 6.418819 GTGCAGCATACCAACAATTGAATATC 59.581 38.462 13.59 0.00 0.00 1.63
2269 2507 9.691362 ACCAACAATTGAATATCAGTTTGTTAC 57.309 29.630 13.59 0.00 39.90 2.50
2362 2600 0.379669 CTAAGCAAAGCATGGCCTCG 59.620 55.000 3.32 0.00 0.00 4.63
2438 2982 1.745653 GGACCAGAAAGCTTACATGCC 59.254 52.381 0.00 0.00 0.00 4.40
2524 3069 3.117888 AGAAAGAAGCACTCCCACTTCAA 60.118 43.478 5.63 0.00 43.84 2.69
2526 3071 3.297134 AGAAGCACTCCCACTTCAAAA 57.703 42.857 5.63 0.00 43.84 2.44
2682 3248 8.745837 CACACACATTACAAATTTTCTGAAGAC 58.254 33.333 0.00 0.00 0.00 3.01
2836 3411 0.180642 ATGCAGAGCAGAGGTGATGG 59.819 55.000 0.00 0.00 43.65 3.51
2840 3415 1.222936 GAGCAGAGGTGATGGGGTG 59.777 63.158 0.00 0.00 0.00 4.61
2841 3416 2.262774 GAGCAGAGGTGATGGGGTGG 62.263 65.000 0.00 0.00 0.00 4.61
2842 3417 2.606587 GCAGAGGTGATGGGGTGGT 61.607 63.158 0.00 0.00 0.00 4.16
2843 3418 1.271840 GCAGAGGTGATGGGGTGGTA 61.272 60.000 0.00 0.00 0.00 3.25
2844 3419 1.511613 CAGAGGTGATGGGGTGGTAT 58.488 55.000 0.00 0.00 0.00 2.73
2845 3420 1.846439 CAGAGGTGATGGGGTGGTATT 59.154 52.381 0.00 0.00 0.00 1.89
2891 3466 1.296715 CAGTGACCCTAGGTGGCAC 59.703 63.158 22.24 22.24 35.25 5.01
2892 3467 1.158705 AGTGACCCTAGGTGGCACT 59.841 57.895 25.18 25.18 35.25 4.40
2893 3468 0.905337 AGTGACCCTAGGTGGCACTC 60.905 60.000 25.18 7.79 37.89 3.51
2946 3524 0.409484 ATTGGGTGGTCAGGGAAAGG 59.591 55.000 0.00 0.00 0.00 3.11
3058 3637 4.232221 GCAATCCAACAAGAACAGTGATG 58.768 43.478 0.00 0.00 0.00 3.07
3062 3641 5.029807 TCCAACAAGAACAGTGATGTGTA 57.970 39.130 0.00 0.00 0.00 2.90
3063 3642 5.620206 TCCAACAAGAACAGTGATGTGTAT 58.380 37.500 0.00 0.00 0.00 2.29
3064 3643 6.061441 TCCAACAAGAACAGTGATGTGTATT 58.939 36.000 0.00 0.00 0.00 1.89
3065 3644 6.017192 TCCAACAAGAACAGTGATGTGTATTG 60.017 38.462 0.00 0.00 35.15 1.90
3067 3646 5.376625 ACAAGAACAGTGATGTGTATTGGT 58.623 37.500 0.00 0.00 34.12 3.67
3069 3648 6.321181 ACAAGAACAGTGATGTGTATTGGTTT 59.679 34.615 0.00 0.00 34.12 3.27
3070 3649 6.959639 AGAACAGTGATGTGTATTGGTTTT 57.040 33.333 0.00 0.00 0.00 2.43
3089 3668 0.032615 TTTGGGGGTTTGTCAGTGCT 60.033 50.000 0.00 0.00 0.00 4.40
3090 3669 0.847373 TTGGGGGTTTGTCAGTGCTA 59.153 50.000 0.00 0.00 0.00 3.49
3092 3671 0.109723 GGGGGTTTGTCAGTGCTACA 59.890 55.000 0.00 0.00 0.00 2.74
3093 3672 1.271926 GGGGGTTTGTCAGTGCTACAT 60.272 52.381 0.00 0.00 0.00 2.29
3094 3673 2.084546 GGGGTTTGTCAGTGCTACATC 58.915 52.381 0.00 0.00 0.00 3.06
3095 3674 2.084546 GGGTTTGTCAGTGCTACATCC 58.915 52.381 0.00 0.00 0.00 3.51
3096 3675 2.552155 GGGTTTGTCAGTGCTACATCCA 60.552 50.000 8.11 0.00 0.00 3.41
3097 3676 2.484264 GGTTTGTCAGTGCTACATCCAC 59.516 50.000 0.00 0.00 0.00 4.02
3098 3677 3.403038 GTTTGTCAGTGCTACATCCACT 58.597 45.455 0.00 0.00 43.92 4.00
3105 3684 1.097232 TGCTACATCCACTGCATTGC 58.903 50.000 0.46 0.46 0.00 3.56
3107 3686 1.202222 GCTACATCCACTGCATTGCAC 60.202 52.381 7.38 0.00 33.79 4.57
3111 3690 2.086094 CATCCACTGCATTGCACTGTA 58.914 47.619 7.38 0.00 33.79 2.74
3119 3698 5.287752 CACTGCATTGCACTGTATGAAAATC 59.712 40.000 7.38 0.00 33.79 2.17
3123 3702 5.397534 GCATTGCACTGTATGAAAATCGATC 59.602 40.000 3.15 0.00 25.93 3.69
3137 3716 8.948853 TGAAAATCGATCTGTTGATTTAACAC 57.051 30.769 0.00 2.37 44.17 3.32
3138 3717 8.563732 TGAAAATCGATCTGTTGATTTAACACA 58.436 29.630 0.00 4.16 44.17 3.72
3140 3719 8.728088 AAATCGATCTGTTGATTTAACACAAC 57.272 30.769 0.00 13.64 43.48 3.32
3141 3720 6.236017 TCGATCTGTTGATTTAACACAACC 57.764 37.500 16.27 5.36 44.07 3.77
3142 3721 5.760743 TCGATCTGTTGATTTAACACAACCA 59.239 36.000 16.27 7.72 44.07 3.67
3143 3722 5.851177 CGATCTGTTGATTTAACACAACCAC 59.149 40.000 16.27 8.07 44.07 4.16
3148 3727 5.047306 TGTTGATTTAACACAACCACAACCA 60.047 36.000 16.27 0.00 44.07 3.67
3154 3733 4.817318 AACACAACCACAACCAAAAGAT 57.183 36.364 0.00 0.00 0.00 2.40
3160 3739 5.654650 ACAACCACAACCAAAAGATAAGTGA 59.345 36.000 0.00 0.00 0.00 3.41
3161 3740 6.183360 ACAACCACAACCAAAAGATAAGTGAG 60.183 38.462 0.00 0.00 0.00 3.51
3186 3767 4.096382 GTGTTCACTAGTAATGGGCAATGG 59.904 45.833 0.00 0.00 0.00 3.16
3188 3777 1.603802 CACTAGTAATGGGCAATGGCG 59.396 52.381 0.00 0.00 42.47 5.69
3196 3785 3.121934 GGCAATGGCGCATCATGA 58.878 55.556 10.83 0.00 42.47 3.07
3201 3790 3.581755 GCAATGGCGCATCATGATAATT 58.418 40.909 10.83 1.50 0.00 1.40
3212 3827 8.309019 GCGCATCATGATAATTTGAATAATTCG 58.691 33.333 8.15 0.00 0.00 3.34
3222 3837 2.546778 TGAATAATTCGGGCGACACTC 58.453 47.619 0.00 0.00 0.00 3.51
3242 3857 5.356190 CACTCTGCCATGATAGATGTTGTTT 59.644 40.000 0.00 0.00 0.00 2.83
3244 3859 6.435277 ACTCTGCCATGATAGATGTTGTTTTT 59.565 34.615 0.00 0.00 0.00 1.94
3255 3870 6.455360 AGATGTTGTTTTTCTTCTTGCAGA 57.545 33.333 0.00 0.00 0.00 4.26
3256 3871 6.268566 AGATGTTGTTTTTCTTCTTGCAGAC 58.731 36.000 0.00 0.00 0.00 3.51
3263 3878 6.753279 TGTTTTTCTTCTTGCAGACTTTCATG 59.247 34.615 0.00 0.00 0.00 3.07
3265 3885 5.679734 TTCTTCTTGCAGACTTTCATGTC 57.320 39.130 0.00 0.00 37.23 3.06
3267 3887 4.512944 TCTTCTTGCAGACTTTCATGTCAC 59.487 41.667 0.00 0.00 39.27 3.67
3268 3888 3.807553 TCTTGCAGACTTTCATGTCACA 58.192 40.909 0.00 0.00 39.27 3.58
3272 3892 4.329392 TGCAGACTTTCATGTCACATCAT 58.671 39.130 0.00 0.00 39.27 2.45
3273 3893 4.155280 TGCAGACTTTCATGTCACATCATG 59.845 41.667 0.00 0.00 44.36 3.07
3274 3894 4.155462 GCAGACTTTCATGTCACATCATGT 59.845 41.667 0.00 0.00 43.70 3.21
3275 3895 5.673068 GCAGACTTTCATGTCACATCATGTC 60.673 44.000 0.00 0.00 43.70 3.06
3276 3896 4.628766 AGACTTTCATGTCACATCATGTCG 59.371 41.667 0.00 0.00 43.70 4.35
3277 3897 4.568956 ACTTTCATGTCACATCATGTCGA 58.431 39.130 0.00 0.00 43.70 4.20
3279 3899 4.454728 TTCATGTCACATCATGTCGAGA 57.545 40.909 0.00 0.00 43.70 4.04
3280 3900 4.454728 TCATGTCACATCATGTCGAGAA 57.545 40.909 0.00 0.00 43.70 2.87
3284 3904 4.176271 TGTCACATCATGTCGAGAATGAC 58.824 43.478 11.82 11.44 36.89 3.06
3308 3944 4.463891 GGAGATTCTGCCTGAATTTTTGGA 59.536 41.667 0.00 0.00 44.70 3.53
3309 3945 5.047092 GGAGATTCTGCCTGAATTTTTGGAA 60.047 40.000 0.00 0.00 44.70 3.53
3316 3952 4.580995 TGCCTGAATTTTTGGAACTAACGA 59.419 37.500 0.00 0.00 0.00 3.85
3324 3960 0.386476 TGGAACTAACGACACGCACT 59.614 50.000 0.00 0.00 0.00 4.40
3337 3973 0.732571 ACGCACTGTGTTTCCTTGTG 59.267 50.000 9.86 0.00 0.00 3.33
3340 3976 1.476488 GCACTGTGTTTCCTTGTGGTT 59.524 47.619 9.86 0.00 34.23 3.67
3511 4148 4.760047 ATCGCCAGCACCACGTCC 62.760 66.667 0.00 0.00 0.00 4.79
3568 4205 1.762957 TCCGAGACAGATTGATTCCCC 59.237 52.381 0.00 0.00 0.00 4.81
3610 4247 2.510012 CAGCGCGCAGAATCCTGA 60.510 61.111 35.10 0.00 43.02 3.86
3646 4283 3.254411 TGCTTGCGACATTGTTTAATCCA 59.746 39.130 0.00 0.00 0.00 3.41
3762 4401 2.045242 TCCGGCGACAGCTACTCT 60.045 61.111 9.30 0.00 44.37 3.24
3966 4617 2.004017 GCGTTCACGACCCATATCAAA 58.996 47.619 2.87 0.00 43.02 2.69
4071 4737 4.219070 CACATCAAGTGGTCCATCAACAAT 59.781 41.667 0.00 0.00 44.69 2.71
4078 4744 2.158549 TGGTCCATCAACAATGTGTCCA 60.159 45.455 0.00 0.00 33.13 4.02
4134 4800 4.020617 CTGGGGCTCAAGACGGCA 62.021 66.667 0.00 0.00 0.00 5.69
4138 4810 2.343758 GGCTCAAGACGGCACTGA 59.656 61.111 0.00 0.00 0.00 3.41
4347 5025 2.883828 CGACTTCTGGGTGCTGGGT 61.884 63.158 0.00 0.00 0.00 4.51
4636 5317 2.430382 GAACGGCGACCACCTCTGAA 62.430 60.000 16.62 0.00 0.00 3.02
4642 5323 0.031585 CGACCACCTCTGAACGTGAA 59.968 55.000 6.20 0.00 31.36 3.18
4672 5353 0.548510 GCCCTTTATGAGAGCCTGGT 59.451 55.000 0.00 0.00 0.00 4.00
4674 5355 2.172717 GCCCTTTATGAGAGCCTGGTTA 59.827 50.000 0.00 0.00 0.00 2.85
4686 5367 1.048724 CCTGGTTATGGCCTCTCCGA 61.049 60.000 3.32 0.00 37.80 4.55
4687 5368 0.105039 CTGGTTATGGCCTCTCCGAC 59.895 60.000 3.32 0.00 37.80 4.79
4688 5369 0.325296 TGGTTATGGCCTCTCCGACT 60.325 55.000 3.32 0.00 37.80 4.18
4689 5370 0.389757 GGTTATGGCCTCTCCGACTC 59.610 60.000 3.32 0.00 37.80 3.36
4690 5371 0.389757 GTTATGGCCTCTCCGACTCC 59.610 60.000 3.32 0.00 37.80 3.85
4691 5372 0.032515 TTATGGCCTCTCCGACTCCA 60.033 55.000 3.32 0.00 37.80 3.86
4739 5422 5.663106 ACTGATGATTAGCTAGGGTTCTTCA 59.337 40.000 0.00 4.13 0.00 3.02
4823 5506 9.722056 GAGATTGTATTTGTTAAGTGCTTATGG 57.278 33.333 0.00 0.00 0.00 2.74
4891 5574 2.957402 AATGTGCTCTCCAAGGTTCA 57.043 45.000 0.00 0.00 0.00 3.18
4895 5578 2.373169 TGTGCTCTCCAAGGTTCAATCT 59.627 45.455 0.00 0.00 0.00 2.40
4896 5579 3.181440 TGTGCTCTCCAAGGTTCAATCTT 60.181 43.478 0.00 0.00 0.00 2.40
4897 5580 4.041567 TGTGCTCTCCAAGGTTCAATCTTA 59.958 41.667 0.00 0.00 0.00 2.10
4911 5597 6.963805 GGTTCAATCTTAAGAATTCAAGCTCG 59.036 38.462 9.71 0.00 0.00 5.03
4946 5632 0.250295 TTTGCAGGTTCACGAGAGGG 60.250 55.000 0.00 0.00 0.00 4.30
4997 5683 2.202557 CGTATCGCCGCTGACACA 60.203 61.111 0.00 0.00 0.00 3.72
5001 5687 0.174617 TATCGCCGCTGACACAATGA 59.825 50.000 0.00 0.00 0.00 2.57
5003 5689 1.737735 CGCCGCTGACACAATGAGA 60.738 57.895 0.00 0.00 0.00 3.27
5008 5694 0.807496 GCTGACACAATGAGAAGCCC 59.193 55.000 0.00 0.00 0.00 5.19
5025 5711 1.750682 GCCCGCCATCCAAAACTATCT 60.751 52.381 0.00 0.00 0.00 1.98
5027 5713 2.421388 CCCGCCATCCAAAACTATCTCA 60.421 50.000 0.00 0.00 0.00 3.27
5036 5722 9.347240 CCATCCAAAACTATCTCATAAATGTCT 57.653 33.333 0.00 0.00 0.00 3.41
5046 5732 9.702494 CTATCTCATAAATGTCTGCTCATACAA 57.298 33.333 0.00 0.00 0.00 2.41
5074 5761 4.614555 TGAAATTCAAATCATAGCGCGT 57.385 36.364 8.43 0.00 0.00 6.01
5077 5764 1.013596 TTCAAATCATAGCGCGTGGG 58.986 50.000 8.43 0.97 0.00 4.61
5082 5769 0.610174 ATCATAGCGCGTGGGATCAT 59.390 50.000 8.43 0.00 0.00 2.45
5090 5777 0.463654 GCGTGGGATCATGTTAGCCA 60.464 55.000 0.00 0.00 32.65 4.75
5092 5779 1.680338 GTGGGATCATGTTAGCCACC 58.320 55.000 0.00 0.00 0.00 4.61
5093 5780 0.180171 TGGGATCATGTTAGCCACCG 59.820 55.000 0.00 0.00 0.00 4.94
5094 5781 0.468226 GGGATCATGTTAGCCACCGA 59.532 55.000 0.00 0.00 0.00 4.69
5095 5782 1.072331 GGGATCATGTTAGCCACCGAT 59.928 52.381 0.00 0.00 0.00 4.18
5096 5783 2.417719 GGATCATGTTAGCCACCGATC 58.582 52.381 0.00 0.00 35.79 3.69
5098 5789 2.309528 TCATGTTAGCCACCGATCAC 57.690 50.000 0.00 0.00 0.00 3.06
5101 5792 2.779755 TGTTAGCCACCGATCACAAT 57.220 45.000 0.00 0.00 0.00 2.71
5102 5793 2.627945 TGTTAGCCACCGATCACAATC 58.372 47.619 0.00 0.00 0.00 2.67
5106 5797 2.513753 AGCCACCGATCACAATCAAAA 58.486 42.857 0.00 0.00 31.76 2.44
5108 5799 3.057315 AGCCACCGATCACAATCAAAAAG 60.057 43.478 0.00 0.00 31.76 2.27
5114 5805 7.362056 CCACCGATCACAATCAAAAAGAGTATT 60.362 37.037 0.00 0.00 31.76 1.89
5115 5806 8.023128 CACCGATCACAATCAAAAAGAGTATTT 58.977 33.333 0.00 0.00 31.76 1.40
5141 5832 4.279671 AGTTTTAACATGCCCGATCACAAA 59.720 37.500 0.00 0.00 0.00 2.83
5143 5834 4.855715 TTAACATGCCCGATCACAAAAA 57.144 36.364 0.00 0.00 0.00 1.94
5190 5881 0.536724 AATTGGATTTTCCGCCCTGC 59.463 50.000 0.00 0.00 40.17 4.85
5196 5887 3.860930 TTTTCCGCCCTGCTGGACC 62.861 63.158 11.88 0.73 35.39 4.46
5225 5916 1.726853 AGCCTACACGTTCAATCTGC 58.273 50.000 0.00 0.00 0.00 4.26
5228 5919 1.671850 CCTACACGTTCAATCTGCCGT 60.672 52.381 0.00 0.00 0.00 5.68
5260 5966 2.125512 CCTTCTCCTTGTCCGGCG 60.126 66.667 0.00 0.00 0.00 6.46
5273 5979 3.197790 CGGCGCCTCCAACTGATG 61.198 66.667 26.68 0.00 34.01 3.07
5279 5985 1.093159 GCCTCCAACTGATGCTTCTG 58.907 55.000 5.13 5.13 32.43 3.02
5281 5987 0.725686 CTCCAACTGATGCTTCTGCG 59.274 55.000 6.42 0.00 43.34 5.18
5288 5995 2.031682 ACTGATGCTTCTGCGTTTCAAC 60.032 45.455 6.42 0.00 43.34 3.18
5291 5998 3.750652 TGATGCTTCTGCGTTTCAACATA 59.249 39.130 0.88 0.00 43.34 2.29
5294 6001 4.475028 TGCTTCTGCGTTTCAACATATTG 58.525 39.130 0.00 0.00 43.34 1.90
5312 6019 0.592637 TGAAACAGATGGCTTGCACG 59.407 50.000 0.00 0.00 0.00 5.34
5313 6020 0.874390 GAAACAGATGGCTTGCACGA 59.126 50.000 0.00 0.00 0.00 4.35
5314 6021 1.470098 GAAACAGATGGCTTGCACGAT 59.530 47.619 0.00 0.00 0.00 3.73
5315 6022 1.089920 AACAGATGGCTTGCACGATC 58.910 50.000 0.00 0.00 0.00 3.69
5316 6023 0.036105 ACAGATGGCTTGCACGATCA 60.036 50.000 0.00 0.00 0.00 2.92
5318 6025 1.263484 CAGATGGCTTGCACGATCATC 59.737 52.381 14.66 14.66 35.69 2.92
5320 6027 1.878088 GATGGCTTGCACGATCATCAT 59.122 47.619 16.42 3.08 35.58 2.45
5321 6028 1.018910 TGGCTTGCACGATCATCATG 58.981 50.000 0.00 0.00 0.00 3.07
5322 6029 0.309922 GGCTTGCACGATCATCATGG 59.690 55.000 0.00 0.00 0.00 3.66
5323 6030 0.317603 GCTTGCACGATCATCATGGC 60.318 55.000 0.00 0.00 0.00 4.40
5324 6031 0.041576 CTTGCACGATCATCATGGCG 60.042 55.000 0.00 0.12 0.00 5.69
5325 6032 0.744057 TTGCACGATCATCATGGCGT 60.744 50.000 1.29 1.29 37.48 5.68
5326 6033 1.153597 TGCACGATCATCATGGCGTC 61.154 55.000 3.86 0.00 34.37 5.19
5327 6034 1.848640 CACGATCATCATGGCGTCG 59.151 57.895 3.86 5.28 34.37 5.12
5328 6035 0.871592 CACGATCATCATGGCGTCGT 60.872 55.000 7.53 7.53 45.27 4.34
5329 6036 0.595053 ACGATCATCATGGCGTCGTC 60.595 55.000 7.53 0.00 41.11 4.20
5330 6037 0.594796 CGATCATCATGGCGTCGTCA 60.595 55.000 0.14 0.14 0.00 4.35
5331 6038 1.570813 GATCATCATGGCGTCGTCAA 58.429 50.000 2.47 0.00 0.00 3.18
5332 6039 1.258982 GATCATCATGGCGTCGTCAAC 59.741 52.381 2.47 0.00 0.00 3.18
5333 6040 0.246360 TCATCATGGCGTCGTCAACT 59.754 50.000 2.47 0.00 0.00 3.16
5334 6041 1.474879 TCATCATGGCGTCGTCAACTA 59.525 47.619 2.47 0.00 0.00 2.24
5335 6042 1.588404 CATCATGGCGTCGTCAACTAC 59.412 52.381 2.47 0.00 0.00 2.73
5343 6050 1.471287 CGTCGTCAACTACATCCTCCA 59.529 52.381 0.00 0.00 0.00 3.86
5352 6059 5.721480 TCAACTACATCCTCCATCTTCAAGA 59.279 40.000 0.00 0.00 0.00 3.02
5353 6060 6.385176 TCAACTACATCCTCCATCTTCAAGAT 59.615 38.462 0.00 0.00 34.74 2.40
5378 6085 3.676605 TTCGCGTCCTCCGAAGCA 61.677 61.111 5.77 0.00 42.91 3.91
5379 6086 3.626680 TTCGCGTCCTCCGAAGCAG 62.627 63.158 5.77 0.00 42.91 4.24
5382 6089 3.064987 GCGTCCTCCGAAGCAGCTA 62.065 63.158 0.00 0.00 42.39 3.32
5383 6090 1.226717 CGTCCTCCGAAGCAGCTAC 60.227 63.158 0.00 0.00 39.56 3.58
5389 6096 1.066303 CTCCGAAGCAGCTACGATCTT 59.934 52.381 0.00 0.00 0.00 2.40
5395 6102 4.615121 CGAAGCAGCTACGATCTTAATCTC 59.385 45.833 0.00 0.00 0.00 2.75
5401 6108 6.737346 GCAGCTACGATCTTAATCTCCTTCTT 60.737 42.308 0.00 0.00 0.00 2.52
5417 6124 3.503748 CCTTCTTTTCGAGCATGGTCTTT 59.496 43.478 21.73 0.00 0.00 2.52
5420 6127 5.147330 TCTTTTCGAGCATGGTCTTTCTA 57.853 39.130 21.73 3.86 0.00 2.10
5426 6133 3.733224 CGAGCATGGTCTTTCTATCTTCG 59.267 47.826 21.73 1.81 0.00 3.79
5432 6139 6.237969 GCATGGTCTTTCTATCTTCGAGTTTC 60.238 42.308 0.00 0.00 0.00 2.78
5433 6140 6.340962 TGGTCTTTCTATCTTCGAGTTTCA 57.659 37.500 0.00 0.00 0.00 2.69
5445 6152 1.989165 CGAGTTTCAGCTTCTTCTCGG 59.011 52.381 15.69 3.37 40.29 4.63
5450 6157 2.155194 CAGCTTCTTCTCGGTCGCG 61.155 63.158 0.00 0.00 0.00 5.87
5475 6182 4.094887 CCATCAACATGTTAAACCTCTCGG 59.905 45.833 11.53 0.00 0.00 4.63
5514 6222 2.526077 TGTTAGAGCGCTTGACGTATG 58.474 47.619 13.26 0.00 46.11 2.39
5515 6223 1.255600 GTTAGAGCGCTTGACGTATGC 59.744 52.381 13.26 0.00 46.11 3.14
5522 6230 1.291132 GCTTGACGTATGCCTCCTTC 58.709 55.000 0.00 0.00 0.00 3.46
5525 6233 1.591863 GACGTATGCCTCCTTCGCC 60.592 63.158 0.00 0.00 0.00 5.54
5560 6268 1.949847 CTCTCCGTCATCTTGGCCGT 61.950 60.000 0.00 0.00 0.00 5.68
5576 6284 2.125106 GTCGCCCCTTCTCGCATT 60.125 61.111 0.00 0.00 0.00 3.56
5579 6287 2.439156 GCCCCTTCTCGCATTGCT 60.439 61.111 7.12 0.00 0.00 3.91
5585 6293 1.061711 CCTTCTCGCATTGCTTTCTCG 59.938 52.381 7.12 0.00 0.00 4.04
5586 6294 1.728971 CTTCTCGCATTGCTTTCTCGT 59.271 47.619 7.12 0.00 0.00 4.18
5587 6295 1.350193 TCTCGCATTGCTTTCTCGTC 58.650 50.000 7.12 0.00 0.00 4.20
5588 6296 0.024238 CTCGCATTGCTTTCTCGTCG 59.976 55.000 7.12 0.00 0.00 5.12
5606 6314 0.032952 CGTCCCACTTCTTTCACCGA 59.967 55.000 0.00 0.00 0.00 4.69
5611 6319 2.294074 CCACTTCTTTCACCGAAACCA 58.706 47.619 0.00 0.00 0.00 3.67
5614 6322 3.058224 CACTTCTTTCACCGAAACCATCC 60.058 47.826 0.00 0.00 0.00 3.51
5635 6343 1.002773 TCTAACCTTCTTGGGCGGTTC 59.997 52.381 0.00 0.00 41.09 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.700846 TCCATTCCAGGTTTTAGGTAACATTA 58.299 34.615 0.00 0.00 41.41 1.90
1 2 6.557568 TCCATTCCAGGTTTTAGGTAACATT 58.442 36.000 0.00 0.00 41.41 2.71
2 3 6.147437 TCCATTCCAGGTTTTAGGTAACAT 57.853 37.500 0.00 0.00 41.41 2.71
3 4 5.515886 CCTCCATTCCAGGTTTTAGGTAACA 60.516 44.000 0.00 0.00 41.41 2.41
4 5 4.948004 CCTCCATTCCAGGTTTTAGGTAAC 59.052 45.833 0.00 0.00 0.00 2.50
5 6 4.017867 CCCTCCATTCCAGGTTTTAGGTAA 60.018 45.833 0.00 0.00 0.00 2.85
6 7 3.526019 CCCTCCATTCCAGGTTTTAGGTA 59.474 47.826 0.00 0.00 0.00 3.08
7 8 2.311841 CCCTCCATTCCAGGTTTTAGGT 59.688 50.000 0.00 0.00 0.00 3.08
8 9 2.580783 TCCCTCCATTCCAGGTTTTAGG 59.419 50.000 0.00 0.00 0.00 2.69
9 10 3.267031 ACTCCCTCCATTCCAGGTTTTAG 59.733 47.826 0.00 0.00 0.00 1.85
10 11 3.265489 ACTCCCTCCATTCCAGGTTTTA 58.735 45.455 0.00 0.00 0.00 1.52
11 12 2.073776 ACTCCCTCCATTCCAGGTTTT 58.926 47.619 0.00 0.00 0.00 2.43
12 13 1.760405 ACTCCCTCCATTCCAGGTTT 58.240 50.000 0.00 0.00 0.00 3.27
13 14 2.661176 TACTCCCTCCATTCCAGGTT 57.339 50.000 0.00 0.00 0.00 3.50
14 15 2.897823 ATACTCCCTCCATTCCAGGT 57.102 50.000 0.00 0.00 0.00 4.00
15 16 4.412199 TGTTAATACTCCCTCCATTCCAGG 59.588 45.833 0.00 0.00 0.00 4.45
16 17 5.630415 TGTTAATACTCCCTCCATTCCAG 57.370 43.478 0.00 0.00 0.00 3.86
17 18 5.690097 GCATGTTAATACTCCCTCCATTCCA 60.690 44.000 0.00 0.00 0.00 3.53
18 19 4.762251 GCATGTTAATACTCCCTCCATTCC 59.238 45.833 0.00 0.00 0.00 3.01
19 20 5.376625 TGCATGTTAATACTCCCTCCATTC 58.623 41.667 0.00 0.00 0.00 2.67
20 21 5.387113 TGCATGTTAATACTCCCTCCATT 57.613 39.130 0.00 0.00 0.00 3.16
21 22 5.387113 TTGCATGTTAATACTCCCTCCAT 57.613 39.130 0.00 0.00 0.00 3.41
22 23 4.853468 TTGCATGTTAATACTCCCTCCA 57.147 40.909 0.00 0.00 0.00 3.86
23 24 6.715347 AAATTGCATGTTAATACTCCCTCC 57.285 37.500 0.00 0.00 0.00 4.30
61 62 2.423577 ACGTGCAATCCAGGTCTTAAC 58.576 47.619 0.00 0.00 38.05 2.01
66 153 2.024176 ATGTACGTGCAATCCAGGTC 57.976 50.000 11.22 0.00 41.32 3.85
68 155 3.179443 ACTATGTACGTGCAATCCAGG 57.821 47.619 11.22 0.43 35.50 4.45
69 156 5.106442 TGTAACTATGTACGTGCAATCCAG 58.894 41.667 11.22 8.22 0.00 3.86
72 159 6.642683 ACTTGTAACTATGTACGTGCAATC 57.357 37.500 11.22 0.00 0.00 2.67
106 193 7.335924 GGACACAATACCTGCTAAAAGATGTTA 59.664 37.037 0.00 0.00 0.00 2.41
107 194 6.151144 GGACACAATACCTGCTAAAAGATGTT 59.849 38.462 0.00 0.00 0.00 2.71
142 229 2.767505 ACAAACCATCCTTCTGTCGAC 58.232 47.619 9.11 9.11 0.00 4.20
147 234 3.189287 GCACAGTACAAACCATCCTTCTG 59.811 47.826 0.00 0.00 0.00 3.02
149 236 2.159627 CGCACAGTACAAACCATCCTTC 59.840 50.000 0.00 0.00 0.00 3.46
150 237 2.151202 CGCACAGTACAAACCATCCTT 58.849 47.619 0.00 0.00 0.00 3.36
151 238 1.346395 TCGCACAGTACAAACCATCCT 59.654 47.619 0.00 0.00 0.00 3.24
160 247 3.255888 AGTTCTCTCATTCGCACAGTACA 59.744 43.478 0.00 0.00 0.00 2.90
182 269 3.699038 CGGAGGATTATTTGCCCTTTTGA 59.301 43.478 0.00 0.00 0.00 2.69
183 270 3.447229 ACGGAGGATTATTTGCCCTTTTG 59.553 43.478 0.00 0.00 0.00 2.44
188 276 1.947456 GACACGGAGGATTATTTGCCC 59.053 52.381 0.00 0.00 0.00 5.36
220 308 6.422776 ACGATTATTTGCCTTTAGTCACTG 57.577 37.500 0.00 0.00 0.00 3.66
226 314 4.331717 ACACCGACGATTATTTGCCTTTAG 59.668 41.667 0.00 0.00 0.00 1.85
235 323 6.812656 TGTTAATGTGTACACCGACGATTATT 59.187 34.615 22.91 14.61 0.00 1.40
323 412 4.813697 GGTAGGAAAGATGCAGAGTTCATC 59.186 45.833 0.00 0.00 40.34 2.92
326 415 4.187694 CTGGTAGGAAAGATGCAGAGTTC 58.812 47.826 0.00 0.00 0.00 3.01
328 417 2.093235 GCTGGTAGGAAAGATGCAGAGT 60.093 50.000 0.00 0.00 0.00 3.24
566 659 6.238211 CCAGCGAATAAAGAAGGTTCATACTG 60.238 42.308 0.00 0.00 0.00 2.74
623 716 1.338389 CCAAGGGCTTGAAATGGCTTG 60.338 52.381 0.00 0.00 42.93 4.01
624 717 0.978907 CCAAGGGCTTGAAATGGCTT 59.021 50.000 0.00 0.00 42.93 4.35
811 915 6.619018 GCCACAACAAATGATGCTGTTTAATG 60.619 38.462 0.00 0.00 36.21 1.90
908 1012 2.096248 GATGGGAAGAGACTCGACAGT 58.904 52.381 0.00 0.00 34.57 3.55
910 1014 1.475403 GGATGGGAAGAGACTCGACA 58.525 55.000 0.00 0.00 0.00 4.35
911 1015 0.382515 CGGATGGGAAGAGACTCGAC 59.617 60.000 0.00 0.00 0.00 4.20
912 1016 1.384989 GCGGATGGGAAGAGACTCGA 61.385 60.000 0.00 0.00 0.00 4.04
913 1017 1.066587 GCGGATGGGAAGAGACTCG 59.933 63.158 0.00 0.00 0.00 4.18
1043 1155 3.813143 TGCAATGCATCACGCCGG 61.813 61.111 2.72 0.00 41.33 6.13
1269 1381 6.071447 TGTGCTCATGCTGTGGTTAATTAATT 60.071 34.615 5.89 5.89 40.48 1.40
1271 1383 4.764308 TGTGCTCATGCTGTGGTTAATTAA 59.236 37.500 0.00 0.00 40.48 1.40
1301 1413 2.341846 ACGGGAAAGAGACAAAGCAA 57.658 45.000 0.00 0.00 0.00 3.91
1315 1427 0.742505 CCTAGCGACATGTAACGGGA 59.257 55.000 0.00 0.00 0.00 5.14
1322 1434 4.207891 ACAAAATCTCCTAGCGACATGT 57.792 40.909 0.00 0.00 0.00 3.21
1327 1439 5.334879 GCAAAAGAACAAAATCTCCTAGCGA 60.335 40.000 0.00 0.00 0.00 4.93
1328 1440 4.853743 GCAAAAGAACAAAATCTCCTAGCG 59.146 41.667 0.00 0.00 0.00 4.26
1456 1570 4.868734 ACGAATCGATAAGTGAAGGTTTCC 59.131 41.667 10.55 0.00 0.00 3.13
1508 1622 1.207089 TGCCACTAGGAGGTTTGATCG 59.793 52.381 5.51 0.00 36.89 3.69
1509 1623 2.027192 TGTGCCACTAGGAGGTTTGATC 60.027 50.000 0.00 0.00 36.89 2.92
1513 1627 1.136828 TGTGTGCCACTAGGAGGTTT 58.863 50.000 0.00 0.00 36.89 3.27
1517 1631 2.996249 ATGATGTGTGCCACTAGGAG 57.004 50.000 0.00 0.00 36.89 3.69
1518 1632 2.103094 GCTATGATGTGTGCCACTAGGA 59.897 50.000 0.00 0.00 36.89 2.94
1519 1633 2.103771 AGCTATGATGTGTGCCACTAGG 59.896 50.000 0.00 0.00 35.11 3.02
1521 1635 2.158914 CCAGCTATGATGTGTGCCACTA 60.159 50.000 0.00 0.00 35.11 2.74
1523 1637 1.019673 CCAGCTATGATGTGTGCCAC 58.980 55.000 0.00 0.00 34.56 5.01
1524 1638 0.620030 ACCAGCTATGATGTGTGCCA 59.380 50.000 0.00 0.00 0.00 4.92
1525 1639 1.019673 CACCAGCTATGATGTGTGCC 58.980 55.000 0.00 0.00 0.00 5.01
1526 1640 0.379669 GCACCAGCTATGATGTGTGC 59.620 55.000 11.30 11.30 37.54 4.57
1527 1641 1.019673 GGCACCAGCTATGATGTGTG 58.980 55.000 1.34 0.00 41.70 3.82
1528 1642 0.462581 CGGCACCAGCTATGATGTGT 60.463 55.000 1.34 0.00 41.70 3.72
1529 1643 0.179076 TCGGCACCAGCTATGATGTG 60.179 55.000 1.34 0.00 41.70 3.21
1530 1644 0.541392 TTCGGCACCAGCTATGATGT 59.459 50.000 1.34 0.00 41.70 3.06
1531 1645 1.667236 TTTCGGCACCAGCTATGATG 58.333 50.000 1.34 0.00 41.70 3.07
1532 1646 2.292267 CTTTTCGGCACCAGCTATGAT 58.708 47.619 1.34 0.00 41.70 2.45
1539 1653 0.667993 TTTCAGCTTTTCGGCACCAG 59.332 50.000 0.00 0.00 34.17 4.00
1547 1661 6.689178 TGTTGCGATTAATTTCAGCTTTTC 57.311 33.333 0.00 0.00 0.00 2.29
1549 1663 8.028938 ACTAATGTTGCGATTAATTTCAGCTTT 58.971 29.630 0.00 1.42 0.00 3.51
1552 1666 6.291269 GCACTAATGTTGCGATTAATTTCAGC 60.291 38.462 0.00 0.00 0.00 4.26
1577 1691 3.878699 AGGAAGTTTTGCAGCAATTTTGG 59.121 39.130 9.12 0.00 0.00 3.28
1583 1698 4.370917 GAAATGAGGAAGTTTTGCAGCAA 58.629 39.130 2.83 2.83 0.00 3.91
1586 1701 3.306294 GGGGAAATGAGGAAGTTTTGCAG 60.306 47.826 0.00 0.00 0.00 4.41
1605 1720 3.767711 AGTCAAGCTAAAAAGAAGGGGG 58.232 45.455 0.00 0.00 0.00 5.40
1620 1735 4.033358 GTCAGTCACAACTCACAAGTCAAG 59.967 45.833 0.00 0.00 33.48 3.02
1632 1747 1.608590 CAACCATGGGTCAGTCACAAC 59.391 52.381 18.09 0.00 33.12 3.32
1650 1765 3.368822 GCTGCAGCCATGAACCAA 58.631 55.556 28.76 0.00 34.31 3.67
1690 1805 1.522355 CCTCTGCATGCCGTAGTGG 60.522 63.158 16.68 12.35 42.50 4.00
1729 1844 1.378882 CCGCCACATCCACAATCAGG 61.379 60.000 0.00 0.00 0.00 3.86
1735 1850 2.271821 CCATCCGCCACATCCACA 59.728 61.111 0.00 0.00 0.00 4.17
1922 2037 9.703892 ATCTTGCTGAAACATCATATACTACTC 57.296 33.333 0.00 0.00 0.00 2.59
1979 2096 5.010282 GTCCTGACTGTAAATCCAACCAAT 58.990 41.667 0.00 0.00 0.00 3.16
2048 2165 0.773644 ACTCCCAGTGCCATTTGTCT 59.226 50.000 0.00 0.00 0.00 3.41
2084 2201 5.404968 GCTCTGTCCAAGATCATCTAAATCG 59.595 44.000 0.00 0.00 33.29 3.34
2113 2230 2.568623 TTTCCAGAAGAGGACAAGCC 57.431 50.000 0.00 0.00 37.42 4.35
2115 2232 9.415544 CATTTTAAATTTCCAGAAGAGGACAAG 57.584 33.333 0.00 0.00 37.42 3.16
2157 2275 4.321230 CCCAATTCACCAGTTAGCTGAAAC 60.321 45.833 8.34 0.00 45.28 2.78
2158 2276 3.826157 CCCAATTCACCAGTTAGCTGAAA 59.174 43.478 8.34 0.27 45.28 2.69
2200 2318 9.666626 TGCATTTTGAAATTTTAAATTGCTCTG 57.333 25.926 32.38 16.47 40.76 3.35
2218 2336 3.965292 TGCACCAACAATTGCATTTTG 57.035 38.095 5.05 2.44 43.79 2.44
2227 2345 1.921982 TGGTATGCTGCACCAACAAT 58.078 45.000 3.57 0.00 43.08 2.71
2256 2374 8.995220 AGCAAGTATTTTCGTAACAAACTGATA 58.005 29.630 0.00 0.00 0.00 2.15
2257 2375 7.871853 AGCAAGTATTTTCGTAACAAACTGAT 58.128 30.769 0.00 0.00 0.00 2.90
2258 2376 7.225931 AGAGCAAGTATTTTCGTAACAAACTGA 59.774 33.333 0.00 0.00 0.00 3.41
2259 2377 7.352739 AGAGCAAGTATTTTCGTAACAAACTG 58.647 34.615 0.00 0.00 0.00 3.16
2438 2982 2.034687 CCACAGTTGGCCCTGGAG 59.965 66.667 12.93 5.60 35.56 3.86
2534 3082 5.109903 GTCCTATACATGGTGTGTGTCTTC 58.890 45.833 0.00 0.00 42.24 2.87
2625 3173 1.381928 GCCTGTGCTGTGCTGCATAT 61.382 55.000 5.27 0.00 45.23 1.78
2891 3466 4.708177 CTCCCCACACAATAATGTAGGAG 58.292 47.826 8.82 8.82 41.92 3.69
2892 3467 3.118038 GCTCCCCACACAATAATGTAGGA 60.118 47.826 3.72 0.00 37.82 2.94
2893 3468 3.117888 AGCTCCCCACACAATAATGTAGG 60.118 47.826 0.00 0.00 37.82 3.18
2928 3506 1.725169 CCCTTTCCCTGACCACCCAA 61.725 60.000 0.00 0.00 0.00 4.12
2946 3524 0.242017 GCACTCATGTTGGCTTGACC 59.758 55.000 0.00 0.00 39.84 4.02
3069 3648 0.827368 GCACTGACAAACCCCCAAAA 59.173 50.000 0.00 0.00 0.00 2.44
3070 3649 0.032615 AGCACTGACAAACCCCCAAA 60.033 50.000 0.00 0.00 0.00 3.28
3073 3652 0.109723 TGTAGCACTGACAAACCCCC 59.890 55.000 0.00 0.00 0.00 5.40
3074 3653 2.084546 GATGTAGCACTGACAAACCCC 58.915 52.381 0.00 0.00 0.00 4.95
3075 3654 2.084546 GGATGTAGCACTGACAAACCC 58.915 52.381 0.00 0.00 0.00 4.11
3076 3655 2.484264 GTGGATGTAGCACTGACAAACC 59.516 50.000 0.00 0.00 0.00 3.27
3077 3656 3.187227 CAGTGGATGTAGCACTGACAAAC 59.813 47.826 0.00 0.00 46.55 2.93
3078 3657 3.402110 CAGTGGATGTAGCACTGACAAA 58.598 45.455 0.00 0.00 46.55 2.83
3079 3658 2.871637 GCAGTGGATGTAGCACTGACAA 60.872 50.000 5.72 0.00 46.55 3.18
3080 3659 1.338105 GCAGTGGATGTAGCACTGACA 60.338 52.381 5.72 0.00 46.55 3.58
3081 3660 1.338105 TGCAGTGGATGTAGCACTGAC 60.338 52.381 5.72 0.00 46.55 3.51
3082 3661 0.975887 TGCAGTGGATGTAGCACTGA 59.024 50.000 5.72 0.00 46.55 3.41
3083 3662 2.034104 ATGCAGTGGATGTAGCACTG 57.966 50.000 0.00 0.00 46.40 3.66
3084 3663 2.362736 CAATGCAGTGGATGTAGCACT 58.637 47.619 6.18 0.00 40.14 4.40
3086 3665 1.097232 GCAATGCAGTGGATGTAGCA 58.903 50.000 16.93 0.00 41.73 3.49
3089 3668 2.495155 AGTGCAATGCAGTGGATGTA 57.505 45.000 15.54 0.00 41.01 2.29
3090 3669 3.351609 AGTGCAATGCAGTGGATGT 57.648 47.368 15.54 1.76 41.01 3.06
3096 3675 4.852134 TTTTCATACAGTGCAATGCAGT 57.148 36.364 15.18 9.51 43.59 4.40
3097 3676 4.497966 CGATTTTCATACAGTGCAATGCAG 59.502 41.667 15.18 0.00 40.08 4.41
3098 3677 4.155644 TCGATTTTCATACAGTGCAATGCA 59.844 37.500 15.18 2.72 35.60 3.96
3099 3678 4.661125 TCGATTTTCATACAGTGCAATGC 58.339 39.130 15.18 0.00 0.00 3.56
3102 3681 5.643348 ACAGATCGATTTTCATACAGTGCAA 59.357 36.000 0.00 0.00 0.00 4.08
3105 3684 7.294676 TCAACAGATCGATTTTCATACAGTG 57.705 36.000 0.00 0.00 0.00 3.66
3133 3712 4.817318 ATCTTTTGGTTGTGGTTGTGTT 57.183 36.364 0.00 0.00 0.00 3.32
3135 3714 5.748152 CACTTATCTTTTGGTTGTGGTTGTG 59.252 40.000 0.00 0.00 0.00 3.33
3136 3715 5.654650 TCACTTATCTTTTGGTTGTGGTTGT 59.345 36.000 0.00 0.00 0.00 3.32
3137 3716 6.039270 TCTCACTTATCTTTTGGTTGTGGTTG 59.961 38.462 0.00 0.00 0.00 3.77
3138 3717 6.126409 TCTCACTTATCTTTTGGTTGTGGTT 58.874 36.000 0.00 0.00 0.00 3.67
3140 3719 5.765182 ACTCTCACTTATCTTTTGGTTGTGG 59.235 40.000 0.00 0.00 0.00 4.17
3141 3720 6.260936 ACACTCTCACTTATCTTTTGGTTGTG 59.739 38.462 0.00 0.00 0.00 3.33
3142 3721 6.357367 ACACTCTCACTTATCTTTTGGTTGT 58.643 36.000 0.00 0.00 0.00 3.32
3143 3722 6.867662 ACACTCTCACTTATCTTTTGGTTG 57.132 37.500 0.00 0.00 0.00 3.77
3160 3739 3.838317 TGCCCATTACTAGTGAACACTCT 59.162 43.478 10.81 1.19 42.54 3.24
3161 3740 4.202245 TGCCCATTACTAGTGAACACTC 57.798 45.455 10.81 0.00 42.54 3.51
3173 3752 0.318955 GATGCGCCATTGCCCATTAC 60.319 55.000 4.18 0.00 36.16 1.89
3176 3757 1.835267 ATGATGCGCCATTGCCCAT 60.835 52.632 4.18 0.00 38.67 4.00
3186 3767 8.309019 CGAATTATTCAAATTATCATGATGCGC 58.691 33.333 18.72 0.00 0.00 6.09
3188 3777 9.079833 CCCGAATTATTCAAATTATCATGATGC 57.920 33.333 18.72 0.00 0.00 3.91
3191 3780 7.174080 TCGCCCGAATTATTCAAATTATCATGA 59.826 33.333 0.00 0.00 0.00 3.07
3195 3784 6.577427 GTGTCGCCCGAATTATTCAAATTATC 59.423 38.462 5.76 0.00 0.00 1.75
3196 3785 6.262273 AGTGTCGCCCGAATTATTCAAATTAT 59.738 34.615 5.76 0.00 0.00 1.28
3201 3790 2.933906 GAGTGTCGCCCGAATTATTCAA 59.066 45.455 5.76 0.00 0.00 2.69
3222 3837 6.860080 AGAAAAACAACATCTATCATGGCAG 58.140 36.000 0.00 0.00 0.00 4.85
3227 3842 8.579006 TGCAAGAAGAAAAACAACATCTATCAT 58.421 29.630 0.00 0.00 0.00 2.45
3230 3845 8.169977 TCTGCAAGAAGAAAAACAACATCTAT 57.830 30.769 0.00 0.00 42.31 1.98
3263 3878 3.241553 CGTCATTCTCGACATGATGTGAC 59.758 47.826 1.23 1.33 34.27 3.67
3265 3885 2.537214 CCGTCATTCTCGACATGATGTG 59.463 50.000 1.23 0.00 36.34 3.21
3267 3887 3.048501 CTCCGTCATTCTCGACATGATG 58.951 50.000 0.00 12.42 37.40 3.07
3268 3888 2.952310 TCTCCGTCATTCTCGACATGAT 59.048 45.455 0.00 0.00 35.54 2.45
3272 3892 3.017442 AGAATCTCCGTCATTCTCGACA 58.983 45.455 0.00 0.00 36.04 4.35
3273 3893 3.367607 CAGAATCTCCGTCATTCTCGAC 58.632 50.000 0.00 0.00 38.33 4.20
3274 3894 2.223595 GCAGAATCTCCGTCATTCTCGA 60.224 50.000 0.00 0.00 38.33 4.04
3275 3895 2.123342 GCAGAATCTCCGTCATTCTCG 58.877 52.381 0.00 0.00 38.33 4.04
3276 3896 2.102252 AGGCAGAATCTCCGTCATTCTC 59.898 50.000 0.00 0.00 38.33 2.87
3277 3897 2.114616 AGGCAGAATCTCCGTCATTCT 58.885 47.619 0.00 0.00 40.58 2.40
3279 3899 1.833630 TCAGGCAGAATCTCCGTCATT 59.166 47.619 0.00 0.00 0.00 2.57
3280 3900 1.489481 TCAGGCAGAATCTCCGTCAT 58.511 50.000 0.00 0.00 0.00 3.06
3284 3904 4.418392 CAAAAATTCAGGCAGAATCTCCG 58.582 43.478 5.55 0.00 46.09 4.63
3308 3944 1.205657 CACAGTGCGTGTCGTTAGTT 58.794 50.000 0.00 0.00 41.03 2.24
3309 3945 2.881441 CACAGTGCGTGTCGTTAGT 58.119 52.632 0.00 0.00 41.03 2.24
3324 3960 1.203523 GCACAACCACAAGGAAACACA 59.796 47.619 0.00 0.00 38.69 3.72
3329 3965 1.388547 GACTGCACAACCACAAGGAA 58.611 50.000 0.00 0.00 38.69 3.36
3445 4082 3.399181 GGGAGGATCACCGGTGCA 61.399 66.667 30.25 18.56 41.83 4.57
3472 4109 1.804748 CGGAGCCTGTAGGTTTTGTTC 59.195 52.381 0.00 0.00 37.57 3.18
3508 4145 1.002011 GTTGAGGGAAGCCAGGGAC 60.002 63.158 0.00 0.00 0.00 4.46
3511 4148 1.301293 GAGGTTGAGGGAAGCCAGG 59.699 63.158 0.00 0.00 31.96 4.45
3596 4233 1.061570 GCTTTCAGGATTCTGCGCG 59.938 57.895 0.00 0.00 40.69 6.86
3610 4247 1.672881 GCAAGCATCCGACATAGCTTT 59.327 47.619 0.00 0.00 44.22 3.51
3762 4401 2.523168 TCGGTGGTGAGCAGGACA 60.523 61.111 0.00 0.00 0.00 4.02
3919 4570 2.962786 CGCGGTGTCGTTCCACAA 60.963 61.111 0.00 0.00 37.06 3.33
4071 4737 2.756400 GGGAGCACCATGGACACA 59.244 61.111 21.47 0.00 39.85 3.72
4240 4918 1.067749 CGTCCACCGTGGTGTTGTA 59.932 57.895 17.32 0.00 44.02 2.41
4614 5295 1.810030 GAGGTGGTCGCCGTTCATC 60.810 63.158 0.00 0.00 0.00 2.92
4636 5317 1.738099 GCTCACGGCTGATTCACGT 60.738 57.895 0.00 0.00 42.17 4.49
4642 5323 0.839946 ATAAAGGGCTCACGGCTGAT 59.160 50.000 0.00 0.00 41.46 2.90
4672 5353 0.032515 TGGAGTCGGAGAGGCCATAA 60.033 55.000 5.01 0.00 36.24 1.90
4674 5355 1.074926 ATGGAGTCGGAGAGGCCAT 60.075 57.895 5.01 0.00 43.42 4.40
4686 5367 2.768253 TCAATCGCACAAGATGGAGT 57.232 45.000 0.00 0.00 0.00 3.85
4687 5368 2.223203 GCTTCAATCGCACAAGATGGAG 60.223 50.000 0.00 0.00 32.62 3.86
4688 5369 1.739466 GCTTCAATCGCACAAGATGGA 59.261 47.619 0.00 0.00 0.00 3.41
4689 5370 1.741706 AGCTTCAATCGCACAAGATGG 59.258 47.619 0.00 0.00 0.00 3.51
4690 5371 3.168963 CAAGCTTCAATCGCACAAGATG 58.831 45.455 0.00 0.00 0.00 2.90
4691 5372 2.163010 CCAAGCTTCAATCGCACAAGAT 59.837 45.455 0.00 0.00 0.00 2.40
4823 5506 5.404466 TCCAATCCATGATTCCAACAAAC 57.596 39.130 0.00 0.00 28.87 2.93
4891 5574 4.336713 GGCCGAGCTTGAATTCTTAAGATT 59.663 41.667 5.89 0.00 0.00 2.40
4895 5578 3.350219 AGGCCGAGCTTGAATTCTTAA 57.650 42.857 7.05 0.00 0.00 1.85
4896 5579 4.380531 CATAGGCCGAGCTTGAATTCTTA 58.619 43.478 7.05 0.00 0.00 2.10
4897 5580 3.209410 CATAGGCCGAGCTTGAATTCTT 58.791 45.455 7.05 0.00 0.00 2.52
4911 5597 1.743995 AAACGTGACCGCATAGGCC 60.744 57.895 0.00 0.00 46.52 5.19
4946 5632 1.336056 GGAGTTCCTCAGTCGTGACAC 60.336 57.143 2.44 0.00 31.08 3.67
4997 5683 1.152881 GGATGGCGGGCTTCTCATT 60.153 57.895 15.40 0.00 0.00 2.57
5001 5687 1.076549 TTTTGGATGGCGGGCTTCT 59.923 52.632 15.40 0.00 0.00 2.85
5003 5689 0.039035 TAGTTTTGGATGGCGGGCTT 59.961 50.000 2.38 0.00 0.00 4.35
5008 5694 6.618287 TTTATGAGATAGTTTTGGATGGCG 57.382 37.500 0.00 0.00 0.00 5.69
5025 5711 9.836864 ATTAGTTGTATGAGCAGACATTTATGA 57.163 29.630 0.00 0.00 32.09 2.15
5066 5753 0.106708 AACATGATCCCACGCGCTAT 59.893 50.000 5.73 0.00 0.00 2.97
5067 5754 0.747852 TAACATGATCCCACGCGCTA 59.252 50.000 5.73 0.00 0.00 4.26
5068 5755 0.530650 CTAACATGATCCCACGCGCT 60.531 55.000 5.73 0.00 0.00 5.92
5069 5756 1.934463 CTAACATGATCCCACGCGC 59.066 57.895 5.73 0.00 0.00 6.86
5070 5757 1.498865 GGCTAACATGATCCCACGCG 61.499 60.000 3.53 3.53 0.00 6.01
5071 5758 0.463654 TGGCTAACATGATCCCACGC 60.464 55.000 0.00 0.00 0.00 5.34
5074 5761 0.180171 CGGTGGCTAACATGATCCCA 59.820 55.000 0.00 0.00 0.00 4.37
5077 5764 2.802816 GTGATCGGTGGCTAACATGATC 59.197 50.000 0.00 12.97 40.96 2.92
5082 5769 2.027653 TGATTGTGATCGGTGGCTAACA 60.028 45.455 0.00 0.00 34.91 2.41
5090 5777 7.687941 AATACTCTTTTTGATTGTGATCGGT 57.312 32.000 0.00 0.00 34.91 4.69
5108 5799 9.048446 TCGGGCATGTTAAAACTATAAATACTC 57.952 33.333 0.00 0.00 0.00 2.59
5114 5805 6.824196 TGTGATCGGGCATGTTAAAACTATAA 59.176 34.615 0.00 0.00 0.00 0.98
5115 5806 6.350103 TGTGATCGGGCATGTTAAAACTATA 58.650 36.000 0.00 0.00 0.00 1.31
5141 5832 4.918810 GGAGTGCCGGATTGATATTTTT 57.081 40.909 5.05 0.00 0.00 1.94
5185 5876 3.042733 TATTGCCGGTCCAGCAGGG 62.043 63.158 1.90 0.00 42.17 4.45
5190 5881 1.376609 GGCTTGTATTGCCGGTCCAG 61.377 60.000 1.90 0.00 41.03 3.86
5211 5902 1.282248 CGACGGCAGATTGAACGTGT 61.282 55.000 0.00 0.00 39.95 4.49
5273 5979 4.722194 TCAATATGTTGAAACGCAGAAGC 58.278 39.130 1.92 0.00 41.22 3.86
5288 5995 4.802039 GTGCAAGCCATCTGTTTCAATATG 59.198 41.667 0.00 0.00 0.00 1.78
5291 5998 2.352030 CGTGCAAGCCATCTGTTTCAAT 60.352 45.455 0.00 0.00 0.00 2.57
5294 6001 0.874390 TCGTGCAAGCCATCTGTTTC 59.126 50.000 0.00 0.00 0.00 2.78
5299 6006 1.134310 TGATGATCGTGCAAGCCATCT 60.134 47.619 23.49 5.35 35.80 2.90
5302 6009 1.018910 CATGATGATCGTGCAAGCCA 58.981 50.000 1.14 0.00 0.00 4.75
5312 6019 1.258982 GTTGACGACGCCATGATGATC 59.741 52.381 0.00 0.00 0.00 2.92
5313 6020 1.134699 AGTTGACGACGCCATGATGAT 60.135 47.619 0.00 0.00 0.00 2.45
5314 6021 0.246360 AGTTGACGACGCCATGATGA 59.754 50.000 0.00 0.00 0.00 2.92
5315 6022 1.588404 GTAGTTGACGACGCCATGATG 59.412 52.381 0.00 0.00 0.00 3.07
5316 6023 1.203758 TGTAGTTGACGACGCCATGAT 59.796 47.619 0.00 0.00 0.00 2.45
5318 6025 1.588404 GATGTAGTTGACGACGCCATG 59.412 52.381 0.00 0.00 0.00 3.66
5320 6027 0.108992 GGATGTAGTTGACGACGCCA 60.109 55.000 0.00 0.00 0.00 5.69
5321 6028 0.172803 AGGATGTAGTTGACGACGCC 59.827 55.000 0.00 0.00 0.00 5.68
5322 6029 1.546834 GAGGATGTAGTTGACGACGC 58.453 55.000 0.00 0.00 0.00 5.19
5323 6030 1.471287 TGGAGGATGTAGTTGACGACG 59.529 52.381 0.00 0.00 0.00 5.12
5324 6031 3.381908 AGATGGAGGATGTAGTTGACGAC 59.618 47.826 0.00 0.00 0.00 4.34
5325 6032 3.632333 AGATGGAGGATGTAGTTGACGA 58.368 45.455 0.00 0.00 0.00 4.20
5326 6033 4.142160 TGAAGATGGAGGATGTAGTTGACG 60.142 45.833 0.00 0.00 0.00 4.35
5327 6034 5.344743 TGAAGATGGAGGATGTAGTTGAC 57.655 43.478 0.00 0.00 0.00 3.18
5328 6035 5.721480 TCTTGAAGATGGAGGATGTAGTTGA 59.279 40.000 0.00 0.00 0.00 3.18
5329 6036 5.982356 TCTTGAAGATGGAGGATGTAGTTG 58.018 41.667 0.00 0.00 0.00 3.16
5330 6037 6.385176 TGATCTTGAAGATGGAGGATGTAGTT 59.615 38.462 13.18 0.00 34.53 2.24
5331 6038 5.901853 TGATCTTGAAGATGGAGGATGTAGT 59.098 40.000 13.18 0.00 34.53 2.73
5332 6039 6.416631 TGATCTTGAAGATGGAGGATGTAG 57.583 41.667 13.18 0.00 34.53 2.74
5333 6040 6.156775 TGTTGATCTTGAAGATGGAGGATGTA 59.843 38.462 13.18 0.00 34.53 2.29
5334 6041 5.045359 TGTTGATCTTGAAGATGGAGGATGT 60.045 40.000 13.18 0.00 34.53 3.06
5335 6042 5.434408 TGTTGATCTTGAAGATGGAGGATG 58.566 41.667 13.18 0.00 34.53 3.51
5343 6050 4.269603 CGCGAAGATGTTGATCTTGAAGAT 59.730 41.667 7.53 7.53 47.00 2.40
5352 6059 1.471676 GGAGGACGCGAAGATGTTGAT 60.472 52.381 15.93 0.00 0.00 2.57
5353 6060 0.108804 GGAGGACGCGAAGATGTTGA 60.109 55.000 15.93 0.00 0.00 3.18
5378 6085 6.969993 AAGAAGGAGATTAAGATCGTAGCT 57.030 37.500 0.00 0.00 37.37 3.32
5379 6086 7.096394 CGAAAAGAAGGAGATTAAGATCGTAGC 60.096 40.741 0.00 0.00 37.37 3.58
5382 6089 6.864342 TCGAAAAGAAGGAGATTAAGATCGT 58.136 36.000 0.00 0.00 37.37 3.73
5383 6090 6.074569 GCTCGAAAAGAAGGAGATTAAGATCG 60.075 42.308 0.00 0.00 37.37 3.69
5389 6096 5.118990 CCATGCTCGAAAAGAAGGAGATTA 58.881 41.667 0.00 0.00 0.00 1.75
5395 6102 2.704572 AGACCATGCTCGAAAAGAAGG 58.295 47.619 0.00 0.00 0.00 3.46
5401 6108 5.344743 AGATAGAAAGACCATGCTCGAAA 57.655 39.130 0.00 0.00 0.00 3.46
5417 6124 5.906113 AGAAGCTGAAACTCGAAGATAGA 57.094 39.130 0.00 0.00 33.89 1.98
5420 6127 5.146010 AGAAGAAGCTGAAACTCGAAGAT 57.854 39.130 0.00 0.00 33.89 2.40
5426 6133 2.990514 GACCGAGAAGAAGCTGAAACTC 59.009 50.000 0.00 0.00 0.00 3.01
5432 6139 2.155194 CGCGACCGAGAAGAAGCTG 61.155 63.158 0.00 0.00 36.29 4.24
5433 6140 2.179517 CGCGACCGAGAAGAAGCT 59.820 61.111 0.00 0.00 36.29 3.74
5445 6152 1.922135 AACATGTTGATGGCCGCGAC 61.922 55.000 11.07 0.00 33.39 5.19
5450 6157 3.763897 AGAGGTTTAACATGTTGATGGCC 59.236 43.478 21.42 14.31 33.39 5.36
5489 6197 2.028523 CGTCAAGCGCTCTAACATCAAG 59.971 50.000 12.06 0.00 0.00 3.02
5494 6202 2.526077 CATACGTCAAGCGCTCTAACA 58.474 47.619 12.06 0.00 46.11 2.41
5510 6218 0.178068 TCTTGGCGAAGGAGGCATAC 59.822 55.000 8.73 0.00 46.15 2.39
5514 6222 1.078143 ACATCTTGGCGAAGGAGGC 60.078 57.895 8.73 0.00 37.19 4.70
5515 6223 0.462759 GGACATCTTGGCGAAGGAGG 60.463 60.000 8.73 1.52 0.00 4.30
5537 6245 1.933247 CCAAGATGACGGAGAGCTTC 58.067 55.000 0.00 0.00 0.00 3.86
5540 6248 1.522580 GGCCAAGATGACGGAGAGC 60.523 63.158 0.00 0.00 0.00 4.09
5544 6252 2.577059 GACGGCCAAGATGACGGA 59.423 61.111 2.24 0.00 0.00 4.69
5545 6253 2.885644 CGACGGCCAAGATGACGG 60.886 66.667 2.24 0.00 0.00 4.79
5560 6268 2.125147 CAATGCGAGAAGGGGCGA 60.125 61.111 0.00 0.00 0.00 5.54
5574 6282 0.320374 TGGGACGACGAGAAAGCAAT 59.680 50.000 0.00 0.00 0.00 3.56
5576 6284 1.006571 GTGGGACGACGAGAAAGCA 60.007 57.895 0.00 0.00 0.00 3.91
5579 6287 1.325355 AGAAGTGGGACGACGAGAAA 58.675 50.000 0.00 0.00 0.00 2.52
5585 6293 1.509703 GGTGAAAGAAGTGGGACGAC 58.490 55.000 0.00 0.00 0.00 4.34
5586 6294 0.032952 CGGTGAAAGAAGTGGGACGA 59.967 55.000 0.00 0.00 0.00 4.20
5587 6295 0.032952 TCGGTGAAAGAAGTGGGACG 59.967 55.000 0.00 0.00 0.00 4.79
5588 6296 2.249844 TTCGGTGAAAGAAGTGGGAC 57.750 50.000 0.00 0.00 0.00 4.46
5606 6314 4.263949 CCCAAGAAGGTTAGAGGATGGTTT 60.264 45.833 0.00 0.00 34.66 3.27
5611 6319 1.486726 CGCCCAAGAAGGTTAGAGGAT 59.513 52.381 0.00 0.00 34.66 3.24
5614 6322 0.613777 ACCGCCCAAGAAGGTTAGAG 59.386 55.000 0.00 0.00 33.96 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.