Multiple sequence alignment - TraesCS7B01G264900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G264900 chr7B 100.000 3454 0 0 1 3454 485468866 485465413 0.000000e+00 6379.0
1 TraesCS7B01G264900 chr7B 97.818 3117 49 2 357 3454 123774253 123771137 0.000000e+00 5361.0
2 TraesCS7B01G264900 chr7B 97.594 3117 41 7 357 3454 450591817 450594918 0.000000e+00 5310.0
3 TraesCS7B01G264900 chr7B 96.379 2458 88 1 998 3454 152476326 152478783 0.000000e+00 4045.0
4 TraesCS7B01G264900 chr7B 100.000 33 0 0 923 955 348951051 348951083 1.040000e-05 62.1
5 TraesCS7B01G264900 chr4A 98.580 3098 44 0 357 3454 705708158 705711255 0.000000e+00 5478.0
6 TraesCS7B01G264900 chr2B 98.550 3104 32 2 354 3454 338741401 338744494 0.000000e+00 5470.0
7 TraesCS7B01G264900 chr2B 96.343 2461 89 1 995 3454 309476630 309479090 0.000000e+00 4045.0
8 TraesCS7B01G264900 chr2B 95.197 229 9 2 357 583 712763515 712763743 9.110000e-96 361.0
9 TraesCS7B01G264900 chr3B 98.133 3107 47 3 357 3454 141746090 141749194 0.000000e+00 5406.0
10 TraesCS7B01G264900 chr5B 97.708 3098 68 3 357 3454 560429441 560432535 0.000000e+00 5325.0
11 TraesCS7B01G264900 chr2A 97.138 2900 59 9 357 3233 448506765 448503867 0.000000e+00 4874.0
12 TraesCS7B01G264900 chr2A 93.018 444 25 4 357 797 116443084 116442644 0.000000e+00 643.0
13 TraesCS7B01G264900 chr1A 96.382 2460 89 0 995 3454 440450176 440452635 0.000000e+00 4050.0
14 TraesCS7B01G264900 chr3D 94.505 364 19 1 1 364 48967863 48968225 8.370000e-156 560.0
15 TraesCS7B01G264900 chr5D 94.231 364 20 1 1 364 480485356 480485718 3.890000e-154 555.0
16 TraesCS7B01G264900 chr5D 93.681 364 22 1 1 364 246017417 246017055 8.430000e-151 544.0
17 TraesCS7B01G264900 chr2D 94.231 364 20 1 1 364 552733670 552734032 3.890000e-154 555.0
18 TraesCS7B01G264900 chr2D 93.956 364 21 1 1 364 586115884 586116246 1.810000e-152 549.0
19 TraesCS7B01G264900 chr2D 93.939 363 21 1 1 363 60084917 60084556 6.520000e-152 547.0
20 TraesCS7B01G264900 chr2D 93.939 363 21 1 1 363 593402926 593403287 6.520000e-152 547.0
21 TraesCS7B01G264900 chr1D 93.956 364 21 1 1 364 412873043 412873405 1.810000e-152 549.0
22 TraesCS7B01G264900 chr1D 93.681 364 22 1 1 364 474868991 474868629 8.430000e-151 544.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G264900 chr7B 485465413 485468866 3453 True 6379 6379 100.000 1 3454 1 chr7B.!!$R2 3453
1 TraesCS7B01G264900 chr7B 123771137 123774253 3116 True 5361 5361 97.818 357 3454 1 chr7B.!!$R1 3097
2 TraesCS7B01G264900 chr7B 450591817 450594918 3101 False 5310 5310 97.594 357 3454 1 chr7B.!!$F3 3097
3 TraesCS7B01G264900 chr7B 152476326 152478783 2457 False 4045 4045 96.379 998 3454 1 chr7B.!!$F1 2456
4 TraesCS7B01G264900 chr4A 705708158 705711255 3097 False 5478 5478 98.580 357 3454 1 chr4A.!!$F1 3097
5 TraesCS7B01G264900 chr2B 338741401 338744494 3093 False 5470 5470 98.550 354 3454 1 chr2B.!!$F2 3100
6 TraesCS7B01G264900 chr2B 309476630 309479090 2460 False 4045 4045 96.343 995 3454 1 chr2B.!!$F1 2459
7 TraesCS7B01G264900 chr3B 141746090 141749194 3104 False 5406 5406 98.133 357 3454 1 chr3B.!!$F1 3097
8 TraesCS7B01G264900 chr5B 560429441 560432535 3094 False 5325 5325 97.708 357 3454 1 chr5B.!!$F1 3097
9 TraesCS7B01G264900 chr2A 448503867 448506765 2898 True 4874 4874 97.138 357 3233 1 chr2A.!!$R2 2876
10 TraesCS7B01G264900 chr1A 440450176 440452635 2459 False 4050 4050 96.382 995 3454 1 chr1A.!!$F1 2459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.037017 TAACATCAACCACACCCGGG 59.963 55.0 22.25 22.25 0.00 5.73 F
926 962 0.251354 CTACTGCTGATGTGGGCTGT 59.749 55.0 0.00 0.00 41.86 4.40 F
1971 2007 0.171455 GTGGCTACTCAGGACACTCG 59.829 60.0 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1509 1545 0.824109 CCAGAGGGTCGCAGTTATCA 59.176 55.000 0.00 0.0 0.00 2.15 R
2420 2457 0.764369 AGTCCCAACTGTCTGGCTCA 60.764 55.000 4.20 0.0 34.88 4.26 R
3095 3133 3.132824 CAGGTATGTGGCTGTCATCACTA 59.867 47.826 7.63 0.0 35.15 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.625488 GAATTTTCGAAGGCGCACG 58.375 52.632 10.83 12.23 37.46 5.34
24 25 1.395805 GAATTTTCGAAGGCGCACGC 61.396 55.000 10.83 6.46 41.06 5.34
25 26 1.852067 AATTTTCGAAGGCGCACGCT 61.852 50.000 15.36 0.00 41.60 5.07
26 27 1.017177 ATTTTCGAAGGCGCACGCTA 61.017 50.000 15.36 0.89 41.60 4.26
27 28 1.623081 TTTTCGAAGGCGCACGCTAG 61.623 55.000 15.36 4.36 41.60 3.42
28 29 3.982372 TTCGAAGGCGCACGCTAGG 62.982 63.158 15.36 2.61 41.60 3.02
29 30 4.492160 CGAAGGCGCACGCTAGGA 62.492 66.667 15.36 0.00 41.60 2.94
30 31 2.107141 GAAGGCGCACGCTAGGAT 59.893 61.111 15.36 0.00 41.60 3.24
31 32 1.951631 GAAGGCGCACGCTAGGATC 60.952 63.158 15.36 3.12 41.60 3.36
32 33 2.629050 GAAGGCGCACGCTAGGATCA 62.629 60.000 15.36 0.00 41.60 2.92
33 34 2.029666 GGCGCACGCTAGGATCAT 59.970 61.111 15.36 0.00 41.60 2.45
34 35 1.179174 AGGCGCACGCTAGGATCATA 61.179 55.000 15.36 0.00 41.60 2.15
35 36 0.108615 GGCGCACGCTAGGATCATAT 60.109 55.000 15.36 0.00 41.60 1.78
36 37 0.994995 GCGCACGCTAGGATCATATG 59.005 55.000 7.96 0.00 38.26 1.78
37 38 1.633561 CGCACGCTAGGATCATATGG 58.366 55.000 2.13 0.00 0.00 2.74
38 39 1.067565 CGCACGCTAGGATCATATGGT 60.068 52.381 2.13 0.00 0.00 3.55
39 40 2.341257 GCACGCTAGGATCATATGGTG 58.659 52.381 2.13 11.46 0.00 4.17
40 41 2.289072 GCACGCTAGGATCATATGGTGT 60.289 50.000 15.13 4.17 0.00 4.16
41 42 3.803715 GCACGCTAGGATCATATGGTGTT 60.804 47.826 15.13 0.00 0.00 3.32
42 43 3.742882 CACGCTAGGATCATATGGTGTTG 59.257 47.826 2.13 0.00 0.00 3.33
43 44 2.738846 CGCTAGGATCATATGGTGTTGC 59.261 50.000 2.13 0.00 0.00 4.17
44 45 3.743521 GCTAGGATCATATGGTGTTGCA 58.256 45.455 2.13 0.00 0.00 4.08
45 46 3.750130 GCTAGGATCATATGGTGTTGCAG 59.250 47.826 2.13 0.00 0.00 4.41
46 47 4.503817 GCTAGGATCATATGGTGTTGCAGA 60.504 45.833 2.13 0.00 0.00 4.26
47 48 4.508551 AGGATCATATGGTGTTGCAGAA 57.491 40.909 2.13 0.00 0.00 3.02
48 49 4.458397 AGGATCATATGGTGTTGCAGAAG 58.542 43.478 2.13 0.00 0.00 2.85
49 50 3.567164 GGATCATATGGTGTTGCAGAAGG 59.433 47.826 2.13 0.00 0.00 3.46
50 51 3.719268 TCATATGGTGTTGCAGAAGGT 57.281 42.857 2.13 0.00 0.00 3.50
51 52 4.032960 TCATATGGTGTTGCAGAAGGTT 57.967 40.909 2.13 0.00 0.00 3.50
52 53 4.406456 TCATATGGTGTTGCAGAAGGTTT 58.594 39.130 2.13 0.00 0.00 3.27
53 54 4.218200 TCATATGGTGTTGCAGAAGGTTTG 59.782 41.667 2.13 0.00 0.00 2.93
54 55 0.459489 TGGTGTTGCAGAAGGTTTGC 59.541 50.000 0.00 0.00 41.86 3.68
59 60 2.719376 TGCAGAAGGTTTGCAGTCC 58.281 52.632 0.00 1.62 45.89 3.85
60 61 1.165907 TGCAGAAGGTTTGCAGTCCG 61.166 55.000 0.00 0.00 45.89 4.79
61 62 0.884704 GCAGAAGGTTTGCAGTCCGA 60.885 55.000 4.07 0.00 41.17 4.55
62 63 1.593196 CAGAAGGTTTGCAGTCCGAA 58.407 50.000 4.07 0.00 0.00 4.30
63 64 2.154462 CAGAAGGTTTGCAGTCCGAAT 58.846 47.619 4.07 0.00 0.00 3.34
64 65 3.334691 CAGAAGGTTTGCAGTCCGAATA 58.665 45.455 4.07 0.00 0.00 1.75
65 66 3.941483 CAGAAGGTTTGCAGTCCGAATAT 59.059 43.478 4.07 0.00 0.00 1.28
66 67 4.034510 CAGAAGGTTTGCAGTCCGAATATC 59.965 45.833 4.07 1.07 0.00 1.63
67 68 2.919228 AGGTTTGCAGTCCGAATATCC 58.081 47.619 4.07 0.00 0.00 2.59
68 69 2.238646 AGGTTTGCAGTCCGAATATCCA 59.761 45.455 4.07 0.00 0.00 3.41
69 70 3.013921 GGTTTGCAGTCCGAATATCCAA 58.986 45.455 0.00 0.00 0.00 3.53
70 71 3.442273 GGTTTGCAGTCCGAATATCCAAA 59.558 43.478 0.00 0.00 0.00 3.28
71 72 4.082463 GGTTTGCAGTCCGAATATCCAAAA 60.082 41.667 0.00 0.00 0.00 2.44
72 73 4.695217 TTGCAGTCCGAATATCCAAAAC 57.305 40.909 0.00 0.00 0.00 2.43
73 74 2.675844 TGCAGTCCGAATATCCAAAACG 59.324 45.455 0.00 0.00 0.00 3.60
74 75 2.031683 GCAGTCCGAATATCCAAAACGG 59.968 50.000 0.00 0.00 44.09 4.44
75 76 2.031683 CAGTCCGAATATCCAAAACGGC 59.968 50.000 0.00 0.00 42.73 5.68
76 77 2.093128 AGTCCGAATATCCAAAACGGCT 60.093 45.455 0.00 0.00 42.73 5.52
77 78 2.681344 GTCCGAATATCCAAAACGGCTT 59.319 45.455 0.00 0.00 42.73 4.35
78 79 3.872771 GTCCGAATATCCAAAACGGCTTA 59.127 43.478 0.00 0.00 42.73 3.09
79 80 4.333372 GTCCGAATATCCAAAACGGCTTAA 59.667 41.667 0.00 0.00 42.73 1.85
80 81 4.942483 TCCGAATATCCAAAACGGCTTAAA 59.058 37.500 0.00 0.00 42.73 1.52
81 82 5.415077 TCCGAATATCCAAAACGGCTTAAAA 59.585 36.000 0.00 0.00 42.73 1.52
82 83 6.095720 TCCGAATATCCAAAACGGCTTAAAAT 59.904 34.615 0.00 0.00 42.73 1.82
83 84 6.416750 CCGAATATCCAAAACGGCTTAAAATC 59.583 38.462 0.00 0.00 37.32 2.17
84 85 7.193595 CGAATATCCAAAACGGCTTAAAATCT 58.806 34.615 0.00 0.00 33.14 2.40
85 86 7.700656 CGAATATCCAAAACGGCTTAAAATCTT 59.299 33.333 0.00 0.00 33.14 2.40
86 87 8.926715 AATATCCAAAACGGCTTAAAATCTTC 57.073 30.769 0.00 0.00 33.14 2.87
87 88 6.590234 ATCCAAAACGGCTTAAAATCTTCT 57.410 33.333 0.00 0.00 33.14 2.85
88 89 6.009115 TCCAAAACGGCTTAAAATCTTCTC 57.991 37.500 0.00 0.00 33.14 2.87
89 90 5.533154 TCCAAAACGGCTTAAAATCTTCTCA 59.467 36.000 0.00 0.00 33.14 3.27
90 91 6.039941 TCCAAAACGGCTTAAAATCTTCTCAA 59.960 34.615 0.00 0.00 33.14 3.02
91 92 6.143919 CCAAAACGGCTTAAAATCTTCTCAAC 59.856 38.462 0.00 0.00 0.00 3.18
92 93 6.385649 AAACGGCTTAAAATCTTCTCAACA 57.614 33.333 0.00 0.00 0.00 3.33
93 94 6.575162 AACGGCTTAAAATCTTCTCAACAT 57.425 33.333 0.00 0.00 0.00 2.71
94 95 7.681939 AACGGCTTAAAATCTTCTCAACATA 57.318 32.000 0.00 0.00 0.00 2.29
95 96 7.308782 ACGGCTTAAAATCTTCTCAACATAG 57.691 36.000 0.00 0.00 0.00 2.23
96 97 6.879458 ACGGCTTAAAATCTTCTCAACATAGT 59.121 34.615 0.00 0.00 0.00 2.12
97 98 7.148407 ACGGCTTAAAATCTTCTCAACATAGTG 60.148 37.037 0.00 0.00 0.00 2.74
98 99 7.475840 GGCTTAAAATCTTCTCAACATAGTGG 58.524 38.462 0.00 0.00 0.00 4.00
99 100 7.415653 GGCTTAAAATCTTCTCAACATAGTGGG 60.416 40.741 0.00 0.00 0.00 4.61
100 101 7.336931 GCTTAAAATCTTCTCAACATAGTGGGA 59.663 37.037 0.00 0.00 0.00 4.37
101 102 9.401058 CTTAAAATCTTCTCAACATAGTGGGAT 57.599 33.333 0.00 0.00 0.00 3.85
102 103 9.753674 TTAAAATCTTCTCAACATAGTGGGATT 57.246 29.630 0.00 0.00 0.00 3.01
103 104 7.636150 AAATCTTCTCAACATAGTGGGATTG 57.364 36.000 0.00 0.00 0.00 2.67
104 105 4.517285 TCTTCTCAACATAGTGGGATTGC 58.483 43.478 0.00 0.00 0.00 3.56
105 106 3.998913 TCTCAACATAGTGGGATTGCA 57.001 42.857 0.00 0.00 0.00 4.08
106 107 4.299586 TCTCAACATAGTGGGATTGCAA 57.700 40.909 0.00 0.00 0.00 4.08
107 108 4.661222 TCTCAACATAGTGGGATTGCAAA 58.339 39.130 1.71 0.00 0.00 3.68
108 109 5.076182 TCTCAACATAGTGGGATTGCAAAA 58.924 37.500 1.71 0.00 0.00 2.44
109 110 5.183713 TCTCAACATAGTGGGATTGCAAAAG 59.816 40.000 1.71 0.00 0.00 2.27
110 111 4.832266 TCAACATAGTGGGATTGCAAAAGT 59.168 37.500 1.71 0.00 0.00 2.66
111 112 4.789012 ACATAGTGGGATTGCAAAAGTG 57.211 40.909 1.71 0.00 0.00 3.16
112 113 4.151883 ACATAGTGGGATTGCAAAAGTGT 58.848 39.130 1.71 0.00 0.00 3.55
113 114 5.321102 ACATAGTGGGATTGCAAAAGTGTA 58.679 37.500 1.71 0.00 0.00 2.90
114 115 5.772672 ACATAGTGGGATTGCAAAAGTGTAA 59.227 36.000 1.71 0.00 33.59 2.41
115 116 6.437162 ACATAGTGGGATTGCAAAAGTGTAAT 59.563 34.615 1.71 0.00 42.09 1.89
116 117 5.806654 AGTGGGATTGCAAAAGTGTAATT 57.193 34.783 1.71 0.00 39.81 1.40
117 118 5.783111 AGTGGGATTGCAAAAGTGTAATTC 58.217 37.500 1.71 0.00 39.81 2.17
121 122 4.929211 GGATTGCAAAAGTGTAATTCCACC 59.071 41.667 1.71 0.00 39.81 4.61
122 123 4.329462 TTGCAAAAGTGTAATTCCACCC 57.671 40.909 0.00 0.00 35.93 4.61
123 124 3.571590 TGCAAAAGTGTAATTCCACCCT 58.428 40.909 0.00 0.00 35.93 4.34
124 125 3.572255 TGCAAAAGTGTAATTCCACCCTC 59.428 43.478 0.00 0.00 35.93 4.30
125 126 3.572255 GCAAAAGTGTAATTCCACCCTCA 59.428 43.478 0.00 0.00 35.93 3.86
126 127 4.321230 GCAAAAGTGTAATTCCACCCTCAG 60.321 45.833 0.00 0.00 35.93 3.35
127 128 4.724279 AAAGTGTAATTCCACCCTCAGT 57.276 40.909 0.00 0.00 35.93 3.41
128 129 3.703001 AGTGTAATTCCACCCTCAGTG 57.297 47.619 0.00 0.00 46.83 3.66
129 130 2.979678 AGTGTAATTCCACCCTCAGTGT 59.020 45.455 0.00 0.00 45.74 3.55
130 131 3.394606 AGTGTAATTCCACCCTCAGTGTT 59.605 43.478 0.00 0.00 45.74 3.32
131 132 4.141251 AGTGTAATTCCACCCTCAGTGTTT 60.141 41.667 0.00 0.00 45.74 2.83
132 133 4.215613 GTGTAATTCCACCCTCAGTGTTTC 59.784 45.833 0.00 0.00 45.74 2.78
133 134 3.884037 AATTCCACCCTCAGTGTTTCT 57.116 42.857 0.00 0.00 45.74 2.52
134 135 2.930826 TTCCACCCTCAGTGTTTCTC 57.069 50.000 0.00 0.00 45.74 2.87
135 136 1.801242 TCCACCCTCAGTGTTTCTCA 58.199 50.000 0.00 0.00 45.74 3.27
136 137 1.694150 TCCACCCTCAGTGTTTCTCAG 59.306 52.381 0.00 0.00 45.74 3.35
137 138 1.417890 CCACCCTCAGTGTTTCTCAGT 59.582 52.381 0.00 0.00 45.74 3.41
138 139 2.632996 CCACCCTCAGTGTTTCTCAGTA 59.367 50.000 0.00 0.00 45.74 2.74
139 140 3.306364 CCACCCTCAGTGTTTCTCAGTAG 60.306 52.174 0.00 0.00 45.74 2.57
140 141 2.300437 ACCCTCAGTGTTTCTCAGTAGC 59.700 50.000 0.00 0.00 0.00 3.58
141 142 2.564947 CCCTCAGTGTTTCTCAGTAGCT 59.435 50.000 0.00 0.00 0.00 3.32
142 143 3.007398 CCCTCAGTGTTTCTCAGTAGCTT 59.993 47.826 0.00 0.00 0.00 3.74
143 144 3.993081 CCTCAGTGTTTCTCAGTAGCTTG 59.007 47.826 0.00 0.00 0.00 4.01
144 145 4.262207 CCTCAGTGTTTCTCAGTAGCTTGA 60.262 45.833 0.00 0.00 0.00 3.02
145 146 5.474578 TCAGTGTTTCTCAGTAGCTTGAT 57.525 39.130 0.00 0.00 0.00 2.57
146 147 5.233225 TCAGTGTTTCTCAGTAGCTTGATG 58.767 41.667 0.00 0.00 0.00 3.07
147 148 4.993584 CAGTGTTTCTCAGTAGCTTGATGT 59.006 41.667 0.00 0.00 0.00 3.06
148 149 5.468072 CAGTGTTTCTCAGTAGCTTGATGTT 59.532 40.000 0.00 0.00 0.00 2.71
149 150 5.698545 AGTGTTTCTCAGTAGCTTGATGTTC 59.301 40.000 0.00 0.00 0.00 3.18
150 151 5.466728 GTGTTTCTCAGTAGCTTGATGTTCA 59.533 40.000 0.00 0.00 0.00 3.18
151 152 6.017934 GTGTTTCTCAGTAGCTTGATGTTCAA 60.018 38.462 0.00 0.00 34.79 2.69
168 169 6.312399 TGTTCAAGATAACATCAACCACAC 57.688 37.500 0.00 0.00 34.50 3.82
169 170 5.240623 TGTTCAAGATAACATCAACCACACC 59.759 40.000 0.00 0.00 34.50 4.16
170 171 4.331968 TCAAGATAACATCAACCACACCC 58.668 43.478 0.00 0.00 0.00 4.61
171 172 2.985896 AGATAACATCAACCACACCCG 58.014 47.619 0.00 0.00 0.00 5.28
172 173 2.014128 GATAACATCAACCACACCCGG 58.986 52.381 0.00 0.00 0.00 5.73
173 174 0.037017 TAACATCAACCACACCCGGG 59.963 55.000 22.25 22.25 0.00 5.73
174 175 2.002018 AACATCAACCACACCCGGGT 62.002 55.000 24.16 24.16 41.41 5.28
175 176 1.674322 CATCAACCACACCCGGGTC 60.674 63.158 27.51 0.00 37.77 4.46
176 177 1.846124 ATCAACCACACCCGGGTCT 60.846 57.895 27.51 10.35 37.77 3.85
177 178 1.423794 ATCAACCACACCCGGGTCTT 61.424 55.000 27.51 11.55 37.77 3.01
178 179 1.152839 CAACCACACCCGGGTCTTT 60.153 57.895 27.51 11.60 37.77 2.52
179 180 1.149854 AACCACACCCGGGTCTTTC 59.850 57.895 27.51 0.00 37.77 2.62
180 181 1.637724 AACCACACCCGGGTCTTTCA 61.638 55.000 27.51 0.00 37.77 2.69
181 182 1.378762 CCACACCCGGGTCTTTCAT 59.621 57.895 27.51 1.66 0.00 2.57
182 183 0.676782 CCACACCCGGGTCTTTCATC 60.677 60.000 27.51 0.00 0.00 2.92
183 184 0.324943 CACACCCGGGTCTTTCATCT 59.675 55.000 27.51 0.00 0.00 2.90
184 185 0.613777 ACACCCGGGTCTTTCATCTC 59.386 55.000 27.51 0.00 0.00 2.75
185 186 0.613260 CACCCGGGTCTTTCATCTCA 59.387 55.000 27.51 0.00 0.00 3.27
186 187 1.003118 CACCCGGGTCTTTCATCTCAA 59.997 52.381 27.51 0.00 0.00 3.02
187 188 1.702957 ACCCGGGTCTTTCATCTCAAA 59.297 47.619 24.16 0.00 0.00 2.69
188 189 2.290323 ACCCGGGTCTTTCATCTCAAAG 60.290 50.000 24.16 0.00 35.06 2.77
189 190 2.290323 CCCGGGTCTTTCATCTCAAAGT 60.290 50.000 14.18 0.00 35.25 2.66
190 191 3.412386 CCGGGTCTTTCATCTCAAAGTT 58.588 45.455 0.00 0.00 35.25 2.66
191 192 4.564821 CCCGGGTCTTTCATCTCAAAGTTA 60.565 45.833 14.18 0.00 35.25 2.24
192 193 5.186198 CCGGGTCTTTCATCTCAAAGTTAT 58.814 41.667 0.00 0.00 35.25 1.89
193 194 5.065218 CCGGGTCTTTCATCTCAAAGTTATG 59.935 44.000 0.00 0.00 35.25 1.90
194 195 5.874810 CGGGTCTTTCATCTCAAAGTTATGA 59.125 40.000 0.00 0.00 35.25 2.15
195 196 6.036517 CGGGTCTTTCATCTCAAAGTTATGAG 59.963 42.308 8.09 8.09 46.62 2.90
212 213 8.910351 AGTTATGAGATATAAAAGCCTTGACC 57.090 34.615 0.00 0.00 0.00 4.02
213 214 8.718656 AGTTATGAGATATAAAAGCCTTGACCT 58.281 33.333 0.00 0.00 0.00 3.85
214 215 8.994170 GTTATGAGATATAAAAGCCTTGACCTC 58.006 37.037 0.00 0.00 0.00 3.85
215 216 5.930135 TGAGATATAAAAGCCTTGACCTCC 58.070 41.667 0.00 0.00 0.00 4.30
216 217 5.667626 TGAGATATAAAAGCCTTGACCTCCT 59.332 40.000 0.00 0.00 0.00 3.69
217 218 6.181206 AGATATAAAAGCCTTGACCTCCTC 57.819 41.667 0.00 0.00 0.00 3.71
218 219 5.667626 AGATATAAAAGCCTTGACCTCCTCA 59.332 40.000 0.00 0.00 0.00 3.86
219 220 4.657814 ATAAAAGCCTTGACCTCCTCAA 57.342 40.909 0.00 0.00 36.46 3.02
220 221 3.532641 AAAAGCCTTGACCTCCTCAAT 57.467 42.857 0.00 0.00 38.26 2.57
221 222 2.503895 AAGCCTTGACCTCCTCAATG 57.496 50.000 0.00 0.00 38.26 2.82
222 223 1.661463 AGCCTTGACCTCCTCAATGA 58.339 50.000 0.00 0.00 38.26 2.57
223 224 1.280421 AGCCTTGACCTCCTCAATGAC 59.720 52.381 0.00 0.00 38.26 3.06
224 225 1.680249 GCCTTGACCTCCTCAATGACC 60.680 57.143 0.00 0.00 38.26 4.02
225 226 1.912043 CCTTGACCTCCTCAATGACCT 59.088 52.381 0.00 0.00 38.26 3.85
226 227 2.307098 CCTTGACCTCCTCAATGACCTT 59.693 50.000 0.00 0.00 38.26 3.50
227 228 3.341823 CTTGACCTCCTCAATGACCTTG 58.658 50.000 0.00 0.00 38.26 3.61
228 229 2.619931 TGACCTCCTCAATGACCTTGA 58.380 47.619 0.00 0.00 41.61 3.02
240 241 3.587840 CCTTGAGGTGGGTCCCAA 58.412 61.111 13.78 0.00 34.18 4.12
241 242 1.850549 CCTTGAGGTGGGTCCCAAA 59.149 57.895 13.78 1.90 34.18 3.28
242 243 0.409484 CCTTGAGGTGGGTCCCAAAT 59.591 55.000 13.78 3.58 34.18 2.32
243 244 1.638589 CCTTGAGGTGGGTCCCAAATA 59.361 52.381 13.78 0.00 34.18 1.40
244 245 2.244769 CCTTGAGGTGGGTCCCAAATAT 59.755 50.000 13.78 0.00 34.18 1.28
245 246 3.555966 CTTGAGGTGGGTCCCAAATATC 58.444 50.000 13.78 8.94 34.18 1.63
246 247 2.567862 TGAGGTGGGTCCCAAATATCA 58.432 47.619 13.78 11.51 34.18 2.15
247 248 2.509548 TGAGGTGGGTCCCAAATATCAG 59.490 50.000 13.78 0.00 34.18 2.90
248 249 2.509964 GAGGTGGGTCCCAAATATCAGT 59.490 50.000 13.78 0.00 34.18 3.41
249 250 3.714798 GAGGTGGGTCCCAAATATCAGTA 59.285 47.826 13.78 0.00 34.18 2.74
250 251 4.315993 AGGTGGGTCCCAAATATCAGTAT 58.684 43.478 13.78 0.00 34.18 2.12
251 252 4.104738 AGGTGGGTCCCAAATATCAGTATG 59.895 45.833 13.78 0.00 34.18 2.39
252 253 4.141251 GGTGGGTCCCAAATATCAGTATGT 60.141 45.833 13.78 0.00 34.18 2.29
253 254 5.063880 GTGGGTCCCAAATATCAGTATGTC 58.936 45.833 13.78 0.00 34.18 3.06
254 255 4.724293 TGGGTCCCAAATATCAGTATGTCA 59.276 41.667 8.65 0.00 37.40 3.58
255 256 5.163205 TGGGTCCCAAATATCAGTATGTCAG 60.163 44.000 8.65 0.00 37.40 3.51
256 257 4.757149 GGTCCCAAATATCAGTATGTCAGC 59.243 45.833 0.00 0.00 37.40 4.26
257 258 4.449068 GTCCCAAATATCAGTATGTCAGCG 59.551 45.833 0.00 0.00 37.40 5.18
258 259 4.343814 TCCCAAATATCAGTATGTCAGCGA 59.656 41.667 0.00 0.00 37.40 4.93
259 260 4.449068 CCCAAATATCAGTATGTCAGCGAC 59.551 45.833 0.00 2.32 37.40 5.19
260 261 5.049828 CCAAATATCAGTATGTCAGCGACA 58.950 41.667 12.53 12.53 46.90 4.35
271 272 4.292977 TGTCAGCGACATACAGACATAG 57.707 45.455 7.20 0.00 37.67 2.23
272 273 3.694566 TGTCAGCGACATACAGACATAGT 59.305 43.478 7.20 0.00 37.67 2.12
273 274 4.879545 TGTCAGCGACATACAGACATAGTA 59.120 41.667 7.20 0.00 37.67 1.82
274 275 5.531287 TGTCAGCGACATACAGACATAGTAT 59.469 40.000 7.20 0.00 37.67 2.12
283 284 6.919775 ATACAGACATAGTATGACCCCTTC 57.080 41.667 17.13 2.88 31.32 3.46
284 285 3.637229 ACAGACATAGTATGACCCCTTCG 59.363 47.826 17.13 2.85 0.00 3.79
285 286 2.628657 AGACATAGTATGACCCCTTCGC 59.371 50.000 17.13 0.00 0.00 4.70
286 287 1.692519 ACATAGTATGACCCCTTCGCC 59.307 52.381 17.13 0.00 0.00 5.54
287 288 1.002087 CATAGTATGACCCCTTCGCCC 59.998 57.143 3.91 0.00 0.00 6.13
288 289 0.761702 TAGTATGACCCCTTCGCCCC 60.762 60.000 0.00 0.00 0.00 5.80
289 290 2.770904 TATGACCCCTTCGCCCCC 60.771 66.667 0.00 0.00 0.00 5.40
290 291 3.644465 TATGACCCCTTCGCCCCCA 62.644 63.158 0.00 0.00 0.00 4.96
295 296 3.093835 CCCTTCGCCCCCACCATA 61.094 66.667 0.00 0.00 0.00 2.74
296 297 2.510906 CCTTCGCCCCCACCATAG 59.489 66.667 0.00 0.00 0.00 2.23
297 298 2.203209 CTTCGCCCCCACCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
301 302 3.478780 GCCCCCACCATAGCGATA 58.521 61.111 0.00 0.00 0.00 2.92
302 303 1.296715 GCCCCCACCATAGCGATAG 59.703 63.158 0.00 0.00 0.00 2.08
303 304 1.481056 GCCCCCACCATAGCGATAGT 61.481 60.000 0.00 0.00 39.35 2.12
304 305 1.933021 CCCCCACCATAGCGATAGTA 58.067 55.000 0.00 0.00 39.35 1.82
305 306 2.467880 CCCCCACCATAGCGATAGTAT 58.532 52.381 0.00 0.00 39.35 2.12
306 307 3.638860 CCCCCACCATAGCGATAGTATA 58.361 50.000 0.00 0.00 39.35 1.47
307 308 3.383825 CCCCCACCATAGCGATAGTATAC 59.616 52.174 0.00 0.00 39.35 1.47
308 309 4.021229 CCCCACCATAGCGATAGTATACA 58.979 47.826 5.50 0.00 39.35 2.29
309 310 4.142227 CCCCACCATAGCGATAGTATACAC 60.142 50.000 5.50 0.00 39.35 2.90
310 311 4.461431 CCCACCATAGCGATAGTATACACA 59.539 45.833 5.50 0.00 39.35 3.72
311 312 5.127194 CCCACCATAGCGATAGTATACACAT 59.873 44.000 5.50 0.00 39.35 3.21
312 313 6.351033 CCCACCATAGCGATAGTATACACATT 60.351 42.308 5.50 0.00 39.35 2.71
313 314 7.097192 CCACCATAGCGATAGTATACACATTT 58.903 38.462 5.50 0.00 39.35 2.32
314 315 7.063426 CCACCATAGCGATAGTATACACATTTG 59.937 40.741 5.50 0.00 39.35 2.32
315 316 7.598869 CACCATAGCGATAGTATACACATTTGT 59.401 37.037 5.50 0.00 37.97 2.83
316 317 7.813148 ACCATAGCGATAGTATACACATTTGTC 59.187 37.037 5.50 0.00 36.18 3.18
317 318 7.812669 CCATAGCGATAGTATACACATTTGTCA 59.187 37.037 5.50 0.00 36.18 3.58
318 319 8.854312 CATAGCGATAGTATACACATTTGTCAG 58.146 37.037 5.50 0.00 36.18 3.51
319 320 5.692204 AGCGATAGTATACACATTTGTCAGC 59.308 40.000 5.50 1.36 36.18 4.26
320 321 5.692204 GCGATAGTATACACATTTGTCAGCT 59.308 40.000 5.50 0.00 36.18 4.24
321 322 6.201044 GCGATAGTATACACATTTGTCAGCTT 59.799 38.462 5.50 0.00 36.18 3.74
322 323 7.567771 GCGATAGTATACACATTTGTCAGCTTC 60.568 40.741 5.50 0.00 36.18 3.86
323 324 7.435192 CGATAGTATACACATTTGTCAGCTTCA 59.565 37.037 5.50 0.00 37.15 3.02
324 325 9.265901 GATAGTATACACATTTGTCAGCTTCAT 57.734 33.333 5.50 0.00 37.15 2.57
325 326 7.928307 AGTATACACATTTGTCAGCTTCATT 57.072 32.000 5.50 0.00 37.15 2.57
327 328 9.448438 AGTATACACATTTGTCAGCTTCATTAA 57.552 29.630 5.50 0.00 37.15 1.40
328 329 9.490663 GTATACACATTTGTCAGCTTCATTAAC 57.509 33.333 0.00 0.00 37.15 2.01
329 330 6.389830 ACACATTTGTCAGCTTCATTAACA 57.610 33.333 0.00 0.00 0.00 2.41
330 331 6.804677 ACACATTTGTCAGCTTCATTAACAA 58.195 32.000 0.00 0.00 0.00 2.83
331 332 6.697019 ACACATTTGTCAGCTTCATTAACAAC 59.303 34.615 0.00 0.00 30.14 3.32
332 333 6.696583 CACATTTGTCAGCTTCATTAACAACA 59.303 34.615 0.00 0.00 30.14 3.33
333 334 7.222417 CACATTTGTCAGCTTCATTAACAACAA 59.778 33.333 0.00 0.00 30.14 2.83
334 335 7.763528 ACATTTGTCAGCTTCATTAACAACAAA 59.236 29.630 0.00 0.00 39.03 2.83
335 336 7.754069 TTTGTCAGCTTCATTAACAACAAAG 57.246 32.000 0.00 0.00 32.27 2.77
336 337 5.280945 TGTCAGCTTCATTAACAACAAAGC 58.719 37.500 0.00 0.00 42.00 3.51
337 338 4.681483 GTCAGCTTCATTAACAACAAAGCC 59.319 41.667 0.00 0.00 42.52 4.35
338 339 4.340666 TCAGCTTCATTAACAACAAAGCCA 59.659 37.500 0.00 0.00 42.52 4.75
339 340 5.049167 CAGCTTCATTAACAACAAAGCCAA 58.951 37.500 0.00 0.00 42.52 4.52
340 341 5.049828 AGCTTCATTAACAACAAAGCCAAC 58.950 37.500 0.00 0.00 42.52 3.77
341 342 4.808364 GCTTCATTAACAACAAAGCCAACA 59.192 37.500 0.00 0.00 37.06 3.33
342 343 5.466393 GCTTCATTAACAACAAAGCCAACAT 59.534 36.000 0.00 0.00 37.06 2.71
343 344 6.644592 GCTTCATTAACAACAAAGCCAACATA 59.355 34.615 0.00 0.00 37.06 2.29
344 345 7.331687 GCTTCATTAACAACAAAGCCAACATAT 59.668 33.333 0.00 0.00 37.06 1.78
345 346 8.531622 TTCATTAACAACAAAGCCAACATATG 57.468 30.769 0.00 0.00 0.00 1.78
346 347 7.665690 TCATTAACAACAAAGCCAACATATGT 58.334 30.769 1.41 1.41 0.00 2.29
347 348 7.598118 TCATTAACAACAAAGCCAACATATGTG 59.402 33.333 9.63 3.84 0.00 3.21
348 349 5.528043 AACAACAAAGCCAACATATGTGA 57.472 34.783 9.63 0.00 0.00 3.58
349 350 5.528043 ACAACAAAGCCAACATATGTGAA 57.472 34.783 9.63 0.00 0.00 3.18
350 351 5.911752 ACAACAAAGCCAACATATGTGAAA 58.088 33.333 9.63 0.00 0.00 2.69
351 352 6.523840 ACAACAAAGCCAACATATGTGAAAT 58.476 32.000 9.63 0.00 0.00 2.17
352 353 6.991531 ACAACAAAGCCAACATATGTGAAATT 59.008 30.769 9.63 0.12 0.00 1.82
353 354 7.498570 ACAACAAAGCCAACATATGTGAAATTT 59.501 29.630 9.63 6.36 0.00 1.82
354 355 7.424227 ACAAAGCCAACATATGTGAAATTTG 57.576 32.000 22.48 22.48 0.00 2.32
355 356 6.991531 ACAAAGCCAACATATGTGAAATTTGT 59.008 30.769 23.31 23.31 33.61 2.83
456 457 0.978146 CATCCAGTCCTCCCGTTCCT 60.978 60.000 0.00 0.00 0.00 3.36
510 512 0.757561 GCAGGTACTCCTCTCTCCCC 60.758 65.000 0.00 0.00 43.07 4.81
535 537 2.575735 TCAACATGGTATCAGAGGCCAA 59.424 45.455 5.01 0.00 35.74 4.52
844 880 3.325753 GGTGGTCCTGGAGCTGCT 61.326 66.667 24.79 0.00 0.00 4.24
916 952 0.318441 GTGGTCAGTGCTACTGCTGA 59.682 55.000 10.36 0.00 45.54 4.26
926 962 0.251354 CTACTGCTGATGTGGGCTGT 59.749 55.000 0.00 0.00 41.86 4.40
1108 1144 2.235650 CAGGAAGTGGCTCAGAAGATCA 59.764 50.000 0.00 0.00 0.00 2.92
1582 1618 1.228245 AAGTGGATTGCACGCAGGT 60.228 52.632 2.44 0.00 0.00 4.00
1872 1908 1.335132 GCAGGGGATACAACGGAGGA 61.335 60.000 0.00 0.00 39.74 3.71
1971 2007 0.171455 GTGGCTACTCAGGACACTCG 59.829 60.000 0.00 0.00 0.00 4.18
2420 2457 1.202348 CGTGATTCAGGAGCGACAGAT 60.202 52.381 0.00 0.00 0.00 2.90
2824 2862 6.450545 TGGATTTATTTGATGCGTCACAAAA 58.549 32.000 8.48 9.67 39.01 2.44
2863 2901 7.048629 TGTTTTCAGAATTTACATGCCTTGA 57.951 32.000 0.00 0.00 0.00 3.02
3095 3133 3.891366 CCCAAATTCTTGTGGAGTGAAGT 59.109 43.478 0.00 0.00 37.03 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.395805 GCGTGCGCCTTCGAAAATTC 61.396 55.000 17.94 0.00 38.10 2.17
6 7 1.442017 GCGTGCGCCTTCGAAAATT 60.442 52.632 17.94 0.00 38.10 1.82
7 8 1.017177 TAGCGTGCGCCTTCGAAAAT 61.017 50.000 17.94 5.57 43.17 1.82
8 9 1.623081 CTAGCGTGCGCCTTCGAAAA 61.623 55.000 17.94 4.25 43.17 2.29
9 10 2.048970 TAGCGTGCGCCTTCGAAA 60.049 55.556 17.94 4.69 43.17 3.46
10 11 2.506217 CTAGCGTGCGCCTTCGAA 60.506 61.111 17.94 0.00 43.17 3.71
11 12 4.492160 CCTAGCGTGCGCCTTCGA 62.492 66.667 17.94 0.00 43.17 3.71
12 13 3.774959 ATCCTAGCGTGCGCCTTCG 62.775 63.158 13.21 8.75 43.17 3.79
13 14 1.951631 GATCCTAGCGTGCGCCTTC 60.952 63.158 13.21 0.00 43.17 3.46
14 15 2.032860 ATGATCCTAGCGTGCGCCTT 62.033 55.000 13.21 0.00 43.17 4.35
15 16 1.179174 TATGATCCTAGCGTGCGCCT 61.179 55.000 13.21 0.00 43.17 5.52
16 17 0.108615 ATATGATCCTAGCGTGCGCC 60.109 55.000 13.21 0.00 43.17 6.53
17 18 0.994995 CATATGATCCTAGCGTGCGC 59.005 55.000 8.67 8.67 42.33 6.09
18 19 1.067565 ACCATATGATCCTAGCGTGCG 60.068 52.381 3.65 0.00 0.00 5.34
19 20 2.289072 ACACCATATGATCCTAGCGTGC 60.289 50.000 3.65 0.00 0.00 5.34
20 21 3.667497 ACACCATATGATCCTAGCGTG 57.333 47.619 3.65 3.73 0.00 5.34
21 22 3.803715 GCAACACCATATGATCCTAGCGT 60.804 47.826 3.65 0.00 0.00 5.07
22 23 2.738846 GCAACACCATATGATCCTAGCG 59.261 50.000 3.65 0.00 0.00 4.26
23 24 3.743521 TGCAACACCATATGATCCTAGC 58.256 45.455 3.65 1.96 0.00 3.42
24 25 5.219343 TCTGCAACACCATATGATCCTAG 57.781 43.478 3.65 0.00 0.00 3.02
25 26 5.455183 CCTTCTGCAACACCATATGATCCTA 60.455 44.000 3.65 0.00 0.00 2.94
26 27 4.458397 CTTCTGCAACACCATATGATCCT 58.542 43.478 3.65 0.00 0.00 3.24
27 28 3.567164 CCTTCTGCAACACCATATGATCC 59.433 47.826 3.65 0.00 0.00 3.36
28 29 4.202441 ACCTTCTGCAACACCATATGATC 58.798 43.478 3.65 0.00 0.00 2.92
29 30 4.240881 ACCTTCTGCAACACCATATGAT 57.759 40.909 3.65 0.00 0.00 2.45
30 31 3.719268 ACCTTCTGCAACACCATATGA 57.281 42.857 3.65 0.00 0.00 2.15
31 32 4.487948 CAAACCTTCTGCAACACCATATG 58.512 43.478 0.00 0.00 0.00 1.78
32 33 3.056607 GCAAACCTTCTGCAACACCATAT 60.057 43.478 0.00 0.00 39.69 1.78
33 34 2.295909 GCAAACCTTCTGCAACACCATA 59.704 45.455 0.00 0.00 39.69 2.74
34 35 1.069049 GCAAACCTTCTGCAACACCAT 59.931 47.619 0.00 0.00 39.69 3.55
35 36 0.459489 GCAAACCTTCTGCAACACCA 59.541 50.000 0.00 0.00 39.69 4.17
36 37 0.459489 TGCAAACCTTCTGCAACACC 59.541 50.000 0.00 0.00 46.47 4.16
42 43 0.884704 TCGGACTGCAAACCTTCTGC 60.885 55.000 7.15 0.00 40.35 4.26
43 44 1.593196 TTCGGACTGCAAACCTTCTG 58.407 50.000 7.15 0.00 0.00 3.02
44 45 2.568623 ATTCGGACTGCAAACCTTCT 57.431 45.000 7.15 0.00 0.00 2.85
45 46 3.312697 GGATATTCGGACTGCAAACCTTC 59.687 47.826 7.15 0.00 0.00 3.46
46 47 3.279434 GGATATTCGGACTGCAAACCTT 58.721 45.455 7.15 0.00 0.00 3.50
47 48 2.238646 TGGATATTCGGACTGCAAACCT 59.761 45.455 7.15 0.00 0.00 3.50
48 49 2.639065 TGGATATTCGGACTGCAAACC 58.361 47.619 0.00 0.00 0.00 3.27
49 50 4.695217 TTTGGATATTCGGACTGCAAAC 57.305 40.909 0.00 0.00 0.00 2.93
50 51 4.378978 CGTTTTGGATATTCGGACTGCAAA 60.379 41.667 0.00 0.00 0.00 3.68
51 52 3.126171 CGTTTTGGATATTCGGACTGCAA 59.874 43.478 0.00 0.00 0.00 4.08
52 53 2.675844 CGTTTTGGATATTCGGACTGCA 59.324 45.455 0.00 0.00 0.00 4.41
53 54 2.031683 CCGTTTTGGATATTCGGACTGC 59.968 50.000 0.00 0.00 43.22 4.40
54 55 2.031683 GCCGTTTTGGATATTCGGACTG 59.968 50.000 6.09 0.00 43.22 3.51
55 56 2.093128 AGCCGTTTTGGATATTCGGACT 60.093 45.455 6.09 0.49 43.22 3.85
56 57 2.285977 AGCCGTTTTGGATATTCGGAC 58.714 47.619 6.09 0.00 43.22 4.79
57 58 2.702592 AGCCGTTTTGGATATTCGGA 57.297 45.000 6.09 0.00 43.22 4.55
58 59 4.886247 TTAAGCCGTTTTGGATATTCGG 57.114 40.909 0.00 0.00 42.00 4.30
59 60 7.193595 AGATTTTAAGCCGTTTTGGATATTCG 58.806 34.615 0.00 0.00 42.00 3.34
60 61 8.926715 AAGATTTTAAGCCGTTTTGGATATTC 57.073 30.769 0.00 0.00 42.00 1.75
61 62 8.749354 AGAAGATTTTAAGCCGTTTTGGATATT 58.251 29.630 0.00 0.00 42.00 1.28
62 63 8.293699 AGAAGATTTTAAGCCGTTTTGGATAT 57.706 30.769 0.00 0.00 42.00 1.63
63 64 7.392113 TGAGAAGATTTTAAGCCGTTTTGGATA 59.608 33.333 0.00 0.00 42.00 2.59
64 65 6.208599 TGAGAAGATTTTAAGCCGTTTTGGAT 59.791 34.615 0.00 0.00 42.00 3.41
65 66 5.533154 TGAGAAGATTTTAAGCCGTTTTGGA 59.467 36.000 0.00 0.00 42.00 3.53
66 67 5.768317 TGAGAAGATTTTAAGCCGTTTTGG 58.232 37.500 0.00 0.00 42.50 3.28
67 68 6.695278 TGTTGAGAAGATTTTAAGCCGTTTTG 59.305 34.615 0.00 0.00 0.00 2.44
68 69 6.801575 TGTTGAGAAGATTTTAAGCCGTTTT 58.198 32.000 0.00 0.00 0.00 2.43
69 70 6.385649 TGTTGAGAAGATTTTAAGCCGTTT 57.614 33.333 0.00 0.00 0.00 3.60
70 71 6.575162 ATGTTGAGAAGATTTTAAGCCGTT 57.425 33.333 0.00 0.00 0.00 4.44
71 72 6.879458 ACTATGTTGAGAAGATTTTAAGCCGT 59.121 34.615 0.00 0.00 0.00 5.68
72 73 7.182761 CACTATGTTGAGAAGATTTTAAGCCG 58.817 38.462 0.00 0.00 0.00 5.52
73 74 7.415653 CCCACTATGTTGAGAAGATTTTAAGCC 60.416 40.741 0.00 0.00 0.00 4.35
74 75 7.336931 TCCCACTATGTTGAGAAGATTTTAAGC 59.663 37.037 0.00 0.00 0.00 3.09
75 76 8.792830 TCCCACTATGTTGAGAAGATTTTAAG 57.207 34.615 0.00 0.00 0.00 1.85
76 77 9.753674 AATCCCACTATGTTGAGAAGATTTTAA 57.246 29.630 0.00 0.00 0.00 1.52
77 78 9.177608 CAATCCCACTATGTTGAGAAGATTTTA 57.822 33.333 0.00 0.00 0.00 1.52
78 79 7.363268 GCAATCCCACTATGTTGAGAAGATTTT 60.363 37.037 0.00 0.00 0.00 1.82
79 80 6.096001 GCAATCCCACTATGTTGAGAAGATTT 59.904 38.462 0.00 0.00 0.00 2.17
80 81 5.591877 GCAATCCCACTATGTTGAGAAGATT 59.408 40.000 0.00 0.00 0.00 2.40
81 82 5.128919 GCAATCCCACTATGTTGAGAAGAT 58.871 41.667 0.00 0.00 0.00 2.40
82 83 4.019411 TGCAATCCCACTATGTTGAGAAGA 60.019 41.667 0.00 0.00 0.00 2.87
83 84 4.264253 TGCAATCCCACTATGTTGAGAAG 58.736 43.478 0.00 0.00 0.00 2.85
84 85 4.299586 TGCAATCCCACTATGTTGAGAA 57.700 40.909 0.00 0.00 0.00 2.87
85 86 3.998913 TGCAATCCCACTATGTTGAGA 57.001 42.857 0.00 0.00 0.00 3.27
86 87 5.047802 ACTTTTGCAATCCCACTATGTTGAG 60.048 40.000 0.00 0.00 0.00 3.02
87 88 4.832266 ACTTTTGCAATCCCACTATGTTGA 59.168 37.500 0.00 0.00 0.00 3.18
88 89 4.925054 CACTTTTGCAATCCCACTATGTTG 59.075 41.667 0.00 0.00 0.00 3.33
89 90 4.588528 ACACTTTTGCAATCCCACTATGTT 59.411 37.500 0.00 0.00 0.00 2.71
90 91 4.151883 ACACTTTTGCAATCCCACTATGT 58.848 39.130 0.00 0.00 0.00 2.29
91 92 4.789012 ACACTTTTGCAATCCCACTATG 57.211 40.909 0.00 0.00 0.00 2.23
92 93 7.363793 GGAATTACACTTTTGCAATCCCACTAT 60.364 37.037 0.00 0.00 0.00 2.12
93 94 6.071616 GGAATTACACTTTTGCAATCCCACTA 60.072 38.462 0.00 0.00 0.00 2.74
94 95 5.279456 GGAATTACACTTTTGCAATCCCACT 60.279 40.000 0.00 0.00 0.00 4.00
95 96 4.929211 GGAATTACACTTTTGCAATCCCAC 59.071 41.667 0.00 0.00 0.00 4.61
96 97 4.590647 TGGAATTACACTTTTGCAATCCCA 59.409 37.500 0.00 0.00 0.00 4.37
97 98 4.929211 GTGGAATTACACTTTTGCAATCCC 59.071 41.667 13.89 0.00 38.32 3.85
98 99 4.929211 GGTGGAATTACACTTTTGCAATCC 59.071 41.667 20.14 1.01 41.09 3.01
99 100 4.929211 GGGTGGAATTACACTTTTGCAATC 59.071 41.667 20.14 0.32 41.09 2.67
100 101 4.592778 AGGGTGGAATTACACTTTTGCAAT 59.407 37.500 20.14 0.00 41.09 3.56
101 102 3.964031 AGGGTGGAATTACACTTTTGCAA 59.036 39.130 20.14 0.00 41.09 4.08
102 103 3.571590 AGGGTGGAATTACACTTTTGCA 58.428 40.909 20.14 0.00 41.09 4.08
103 104 3.572255 TGAGGGTGGAATTACACTTTTGC 59.428 43.478 20.14 3.21 41.09 3.68
104 105 4.827284 ACTGAGGGTGGAATTACACTTTTG 59.173 41.667 20.14 9.59 41.09 2.44
105 106 4.827284 CACTGAGGGTGGAATTACACTTTT 59.173 41.667 20.14 6.38 41.90 2.27
106 107 4.398319 CACTGAGGGTGGAATTACACTTT 58.602 43.478 20.14 8.85 41.90 2.66
107 108 4.021102 CACTGAGGGTGGAATTACACTT 57.979 45.455 20.14 9.21 41.90 3.16
108 109 3.703001 CACTGAGGGTGGAATTACACT 57.297 47.619 20.14 1.28 41.90 3.55
119 120 2.300437 GCTACTGAGAAACACTGAGGGT 59.700 50.000 0.00 0.00 34.21 4.34
120 121 2.564947 AGCTACTGAGAAACACTGAGGG 59.435 50.000 0.00 0.00 34.21 4.30
121 122 3.951775 AGCTACTGAGAAACACTGAGG 57.048 47.619 0.00 0.00 34.21 3.86
122 123 4.876125 TCAAGCTACTGAGAAACACTGAG 58.124 43.478 0.00 0.00 35.98 3.35
123 124 4.937201 TCAAGCTACTGAGAAACACTGA 57.063 40.909 0.00 0.00 0.00 3.41
124 125 4.993584 ACATCAAGCTACTGAGAAACACTG 59.006 41.667 0.00 0.00 0.00 3.66
125 126 5.220710 ACATCAAGCTACTGAGAAACACT 57.779 39.130 0.00 0.00 0.00 3.55
126 127 5.466728 TGAACATCAAGCTACTGAGAAACAC 59.533 40.000 0.00 0.00 0.00 3.32
127 128 5.610398 TGAACATCAAGCTACTGAGAAACA 58.390 37.500 0.00 0.00 0.00 2.83
128 129 6.545504 TTGAACATCAAGCTACTGAGAAAC 57.454 37.500 0.00 0.00 31.83 2.78
129 130 6.791887 CTTGAACATCAAGCTACTGAGAAA 57.208 37.500 7.13 0.00 46.03 2.52
145 146 5.240623 GGTGTGGTTGATGTTATCTTGAACA 59.759 40.000 0.00 0.00 43.23 3.18
146 147 5.335661 GGGTGTGGTTGATGTTATCTTGAAC 60.336 44.000 0.00 0.00 0.00 3.18
147 148 4.764823 GGGTGTGGTTGATGTTATCTTGAA 59.235 41.667 0.00 0.00 0.00 2.69
148 149 4.331968 GGGTGTGGTTGATGTTATCTTGA 58.668 43.478 0.00 0.00 0.00 3.02
149 150 3.126858 CGGGTGTGGTTGATGTTATCTTG 59.873 47.826 0.00 0.00 0.00 3.02
150 151 3.343617 CGGGTGTGGTTGATGTTATCTT 58.656 45.455 0.00 0.00 0.00 2.40
151 152 2.355716 CCGGGTGTGGTTGATGTTATCT 60.356 50.000 0.00 0.00 0.00 1.98
152 153 2.014128 CCGGGTGTGGTTGATGTTATC 58.986 52.381 0.00 0.00 0.00 1.75
153 154 1.340600 CCCGGGTGTGGTTGATGTTAT 60.341 52.381 14.18 0.00 0.00 1.89
154 155 0.037017 CCCGGGTGTGGTTGATGTTA 59.963 55.000 14.18 0.00 0.00 2.41
155 156 1.228429 CCCGGGTGTGGTTGATGTT 60.228 57.895 14.18 0.00 0.00 2.71
156 157 2.406002 GACCCGGGTGTGGTTGATGT 62.406 60.000 36.01 0.00 35.85 3.06
157 158 1.674322 GACCCGGGTGTGGTTGATG 60.674 63.158 36.01 0.00 35.85 3.07
158 159 1.423794 AAGACCCGGGTGTGGTTGAT 61.424 55.000 36.01 7.96 35.85 2.57
159 160 1.637724 AAAGACCCGGGTGTGGTTGA 61.638 55.000 36.01 0.00 35.85 3.18
160 161 1.152839 AAAGACCCGGGTGTGGTTG 60.153 57.895 36.01 0.00 35.85 3.77
161 162 1.149854 GAAAGACCCGGGTGTGGTT 59.850 57.895 36.01 20.25 35.85 3.67
162 163 1.423794 ATGAAAGACCCGGGTGTGGT 61.424 55.000 36.01 19.80 39.32 4.16
163 164 0.676782 GATGAAAGACCCGGGTGTGG 60.677 60.000 36.01 0.59 0.00 4.17
164 165 0.324943 AGATGAAAGACCCGGGTGTG 59.675 55.000 36.01 1.09 0.00 3.82
165 166 0.613777 GAGATGAAAGACCCGGGTGT 59.386 55.000 36.01 27.74 0.00 4.16
166 167 0.613260 TGAGATGAAAGACCCGGGTG 59.387 55.000 36.01 2.55 0.00 4.61
167 168 1.358152 TTGAGATGAAAGACCCGGGT 58.642 50.000 30.81 30.81 0.00 5.28
168 169 2.290323 ACTTTGAGATGAAAGACCCGGG 60.290 50.000 22.25 22.25 36.58 5.73
169 170 3.059352 ACTTTGAGATGAAAGACCCGG 57.941 47.619 0.00 0.00 36.58 5.73
170 171 5.874810 TCATAACTTTGAGATGAAAGACCCG 59.125 40.000 0.00 0.00 36.58 5.28
171 172 7.106239 TCTCATAACTTTGAGATGAAAGACCC 58.894 38.462 0.00 0.00 45.49 4.46
186 187 9.343539 GGTCAAGGCTTTTATATCTCATAACTT 57.656 33.333 0.00 0.00 0.00 2.66
187 188 8.718656 AGGTCAAGGCTTTTATATCTCATAACT 58.281 33.333 0.00 0.00 0.00 2.24
188 189 8.910351 AGGTCAAGGCTTTTATATCTCATAAC 57.090 34.615 0.00 0.00 0.00 1.89
189 190 8.157476 GGAGGTCAAGGCTTTTATATCTCATAA 58.843 37.037 0.00 0.00 0.00 1.90
190 191 7.514127 AGGAGGTCAAGGCTTTTATATCTCATA 59.486 37.037 0.00 0.00 0.00 2.15
191 192 6.331307 AGGAGGTCAAGGCTTTTATATCTCAT 59.669 38.462 0.00 0.00 0.00 2.90
192 193 5.667626 AGGAGGTCAAGGCTTTTATATCTCA 59.332 40.000 0.00 0.00 0.00 3.27
193 194 6.181206 AGGAGGTCAAGGCTTTTATATCTC 57.819 41.667 0.00 0.00 0.00 2.75
194 195 5.667626 TGAGGAGGTCAAGGCTTTTATATCT 59.332 40.000 0.00 0.00 29.64 1.98
195 196 5.930135 TGAGGAGGTCAAGGCTTTTATATC 58.070 41.667 0.00 0.00 29.64 1.63
196 197 5.975988 TGAGGAGGTCAAGGCTTTTATAT 57.024 39.130 0.00 0.00 29.64 0.86
197 198 5.772393 TTGAGGAGGTCAAGGCTTTTATA 57.228 39.130 0.00 0.00 40.45 0.98
198 199 4.657814 TTGAGGAGGTCAAGGCTTTTAT 57.342 40.909 0.00 0.00 40.45 1.40
208 209 2.619931 TCAAGGTCATTGAGGAGGTCA 58.380 47.619 0.00 0.00 43.09 4.02
223 224 0.409484 ATTTGGGACCCACCTCAAGG 59.591 55.000 14.59 0.00 42.17 3.61
224 225 3.053693 TGATATTTGGGACCCACCTCAAG 60.054 47.826 14.59 0.00 38.98 3.02
225 226 2.922955 TGATATTTGGGACCCACCTCAA 59.077 45.455 14.59 5.08 38.98 3.02
226 227 2.509548 CTGATATTTGGGACCCACCTCA 59.490 50.000 14.59 12.37 38.98 3.86
227 228 2.509964 ACTGATATTTGGGACCCACCTC 59.490 50.000 14.59 8.21 38.98 3.85
228 229 2.573463 ACTGATATTTGGGACCCACCT 58.427 47.619 14.59 5.94 38.98 4.00
229 230 4.141251 ACATACTGATATTTGGGACCCACC 60.141 45.833 14.59 0.86 30.78 4.61
230 231 5.048846 ACATACTGATATTTGGGACCCAC 57.951 43.478 14.59 1.19 30.78 4.61
231 232 4.724293 TGACATACTGATATTTGGGACCCA 59.276 41.667 9.95 9.95 0.00 4.51
232 233 5.304686 TGACATACTGATATTTGGGACCC 57.695 43.478 2.45 2.45 0.00 4.46
233 234 4.757149 GCTGACATACTGATATTTGGGACC 59.243 45.833 0.00 0.00 0.00 4.46
234 235 4.449068 CGCTGACATACTGATATTTGGGAC 59.551 45.833 0.00 0.00 0.00 4.46
235 236 4.343814 TCGCTGACATACTGATATTTGGGA 59.656 41.667 0.00 0.00 0.00 4.37
236 237 4.449068 GTCGCTGACATACTGATATTTGGG 59.551 45.833 4.20 0.00 32.09 4.12
237 238 5.049828 TGTCGCTGACATACTGATATTTGG 58.950 41.667 7.20 0.00 37.67 3.28
250 251 3.694566 ACTATGTCTGTATGTCGCTGACA 59.305 43.478 12.53 12.53 46.90 3.58
251 252 4.294416 ACTATGTCTGTATGTCGCTGAC 57.706 45.455 2.32 2.32 36.01 3.51
252 253 5.763204 TCATACTATGTCTGTATGTCGCTGA 59.237 40.000 11.88 0.00 44.35 4.26
253 254 5.853810 GTCATACTATGTCTGTATGTCGCTG 59.146 44.000 11.88 0.00 44.35 5.18
254 255 5.048643 GGTCATACTATGTCTGTATGTCGCT 60.049 44.000 11.88 0.00 44.35 4.93
255 256 5.154932 GGTCATACTATGTCTGTATGTCGC 58.845 45.833 11.88 5.91 44.35 5.19
256 257 5.335740 GGGGTCATACTATGTCTGTATGTCG 60.336 48.000 11.88 0.00 44.35 4.35
257 258 5.775701 AGGGGTCATACTATGTCTGTATGTC 59.224 44.000 11.88 7.75 44.35 3.06
258 259 5.716979 AGGGGTCATACTATGTCTGTATGT 58.283 41.667 11.88 0.00 44.35 2.29
259 260 6.570571 CGAAGGGGTCATACTATGTCTGTATG 60.571 46.154 7.36 7.36 44.98 2.39
260 261 5.477291 CGAAGGGGTCATACTATGTCTGTAT 59.523 44.000 0.00 0.00 0.00 2.29
261 262 4.825634 CGAAGGGGTCATACTATGTCTGTA 59.174 45.833 0.00 0.00 0.00 2.74
262 263 3.637229 CGAAGGGGTCATACTATGTCTGT 59.363 47.826 0.00 0.00 0.00 3.41
263 264 3.553096 GCGAAGGGGTCATACTATGTCTG 60.553 52.174 0.00 0.00 0.00 3.51
264 265 2.628657 GCGAAGGGGTCATACTATGTCT 59.371 50.000 0.00 0.00 0.00 3.41
265 266 2.288886 GGCGAAGGGGTCATACTATGTC 60.289 54.545 0.00 0.00 0.00 3.06
266 267 1.692519 GGCGAAGGGGTCATACTATGT 59.307 52.381 0.00 0.00 0.00 2.29
267 268 1.002087 GGGCGAAGGGGTCATACTATG 59.998 57.143 0.00 0.00 0.00 2.23
268 269 1.349067 GGGCGAAGGGGTCATACTAT 58.651 55.000 0.00 0.00 0.00 2.12
269 270 0.761702 GGGGCGAAGGGGTCATACTA 60.762 60.000 0.00 0.00 0.00 1.82
270 271 2.070650 GGGGCGAAGGGGTCATACT 61.071 63.158 0.00 0.00 0.00 2.12
271 272 2.509422 GGGGCGAAGGGGTCATAC 59.491 66.667 0.00 0.00 0.00 2.39
272 273 2.770904 GGGGGCGAAGGGGTCATA 60.771 66.667 0.00 0.00 0.00 2.15
278 279 3.093835 TATGGTGGGGGCGAAGGG 61.094 66.667 0.00 0.00 0.00 3.95
279 280 2.510906 CTATGGTGGGGGCGAAGG 59.489 66.667 0.00 0.00 0.00 3.46
280 281 2.203209 GCTATGGTGGGGGCGAAG 60.203 66.667 0.00 0.00 0.00 3.79
284 285 1.296715 CTATCGCTATGGTGGGGGC 59.703 63.158 0.00 0.00 0.00 5.80
285 286 1.933021 TACTATCGCTATGGTGGGGG 58.067 55.000 0.00 0.00 0.00 5.40
286 287 4.021229 TGTATACTATCGCTATGGTGGGG 58.979 47.826 4.17 0.00 0.00 4.96
287 288 4.461431 TGTGTATACTATCGCTATGGTGGG 59.539 45.833 4.17 0.00 0.00 4.61
288 289 5.638596 TGTGTATACTATCGCTATGGTGG 57.361 43.478 4.17 0.00 0.00 4.61
289 290 7.598869 ACAAATGTGTATACTATCGCTATGGTG 59.401 37.037 4.17 0.00 35.72 4.17
290 291 7.667557 ACAAATGTGTATACTATCGCTATGGT 58.332 34.615 4.17 0.00 35.72 3.55
291 292 7.812669 TGACAAATGTGTATACTATCGCTATGG 59.187 37.037 4.17 0.00 38.41 2.74
292 293 8.742554 TGACAAATGTGTATACTATCGCTATG 57.257 34.615 4.17 0.00 38.41 2.23
293 294 7.542477 GCTGACAAATGTGTATACTATCGCTAT 59.458 37.037 4.17 0.00 38.41 2.97
294 295 6.861572 GCTGACAAATGTGTATACTATCGCTA 59.138 38.462 4.17 0.00 38.41 4.26
295 296 5.692204 GCTGACAAATGTGTATACTATCGCT 59.308 40.000 4.17 0.00 38.41 4.93
296 297 5.692204 AGCTGACAAATGTGTATACTATCGC 59.308 40.000 4.17 0.00 38.41 4.58
297 298 7.435192 TGAAGCTGACAAATGTGTATACTATCG 59.565 37.037 4.17 0.00 38.41 2.92
298 299 8.648557 TGAAGCTGACAAATGTGTATACTATC 57.351 34.615 4.17 0.00 38.41 2.08
299 300 9.618890 AATGAAGCTGACAAATGTGTATACTAT 57.381 29.630 4.17 0.00 38.41 2.12
301 302 7.928307 AATGAAGCTGACAAATGTGTATACT 57.072 32.000 4.17 0.00 38.41 2.12
302 303 9.490663 GTTAATGAAGCTGACAAATGTGTATAC 57.509 33.333 0.00 0.00 38.41 1.47
303 304 9.225436 TGTTAATGAAGCTGACAAATGTGTATA 57.775 29.630 0.00 0.00 38.41 1.47
304 305 8.109705 TGTTAATGAAGCTGACAAATGTGTAT 57.890 30.769 0.00 0.00 38.41 2.29
305 306 7.503521 TGTTAATGAAGCTGACAAATGTGTA 57.496 32.000 0.00 0.00 38.41 2.90
306 307 6.389830 TGTTAATGAAGCTGACAAATGTGT 57.610 33.333 0.00 0.00 42.10 3.72
307 308 6.696583 TGTTGTTAATGAAGCTGACAAATGTG 59.303 34.615 0.00 0.00 32.66 3.21
308 309 6.804677 TGTTGTTAATGAAGCTGACAAATGT 58.195 32.000 0.00 0.00 32.66 2.71
309 310 7.697352 TTGTTGTTAATGAAGCTGACAAATG 57.303 32.000 0.00 0.00 32.66 2.32
310 311 7.042523 GCTTTGTTGTTAATGAAGCTGACAAAT 60.043 33.333 0.00 0.00 39.56 2.32
311 312 6.255453 GCTTTGTTGTTAATGAAGCTGACAAA 59.745 34.615 0.00 0.00 39.56 2.83
312 313 5.748152 GCTTTGTTGTTAATGAAGCTGACAA 59.252 36.000 0.00 0.00 39.56 3.18
313 314 5.280945 GCTTTGTTGTTAATGAAGCTGACA 58.719 37.500 0.00 0.00 39.56 3.58
314 315 4.681483 GGCTTTGTTGTTAATGAAGCTGAC 59.319 41.667 6.38 0.00 41.70 3.51
315 316 4.340666 TGGCTTTGTTGTTAATGAAGCTGA 59.659 37.500 6.38 0.00 41.70 4.26
316 317 4.619973 TGGCTTTGTTGTTAATGAAGCTG 58.380 39.130 6.38 0.00 41.70 4.24
317 318 4.935352 TGGCTTTGTTGTTAATGAAGCT 57.065 36.364 6.38 0.00 41.70 3.74
318 319 4.808364 TGTTGGCTTTGTTGTTAATGAAGC 59.192 37.500 0.00 0.00 41.37 3.86
319 320 8.649841 CATATGTTGGCTTTGTTGTTAATGAAG 58.350 33.333 0.00 0.00 0.00 3.02
320 321 8.147058 ACATATGTTGGCTTTGTTGTTAATGAA 58.853 29.630 1.41 0.00 0.00 2.57
321 322 7.598118 CACATATGTTGGCTTTGTTGTTAATGA 59.402 33.333 5.37 0.00 0.00 2.57
322 323 7.598118 TCACATATGTTGGCTTTGTTGTTAATG 59.402 33.333 5.37 0.00 0.00 1.90
323 324 7.665690 TCACATATGTTGGCTTTGTTGTTAAT 58.334 30.769 5.37 0.00 0.00 1.40
324 325 7.043961 TCACATATGTTGGCTTTGTTGTTAA 57.956 32.000 5.37 0.00 0.00 2.01
325 326 6.641169 TCACATATGTTGGCTTTGTTGTTA 57.359 33.333 5.37 0.00 0.00 2.41
326 327 5.528043 TCACATATGTTGGCTTTGTTGTT 57.472 34.783 5.37 0.00 0.00 2.83
327 328 5.528043 TTCACATATGTTGGCTTTGTTGT 57.472 34.783 5.37 0.00 0.00 3.32
328 329 7.424227 AATTTCACATATGTTGGCTTTGTTG 57.576 32.000 5.37 0.00 0.00 3.33
329 330 7.498570 ACAAATTTCACATATGTTGGCTTTGTT 59.501 29.630 20.16 11.36 31.20 2.83
330 331 6.991531 ACAAATTTCACATATGTTGGCTTTGT 59.008 30.769 20.16 20.16 0.00 2.83
331 332 7.424227 ACAAATTTCACATATGTTGGCTTTG 57.576 32.000 19.33 19.33 0.00 2.77
332 333 7.863666 CAACAAATTTCACATATGTTGGCTTT 58.136 30.769 5.37 1.90 44.29 3.51
333 334 7.424227 CAACAAATTTCACATATGTTGGCTT 57.576 32.000 5.37 0.00 44.29 4.35
338 339 8.825745 GGTTCAACAACAAATTTCACATATGTT 58.174 29.630 5.37 0.00 34.74 2.71
339 340 7.168972 CGGTTCAACAACAAATTTCACATATGT 59.831 33.333 1.41 1.41 33.70 2.29
340 341 7.359097 CCGGTTCAACAACAAATTTCACATATG 60.359 37.037 0.00 0.00 33.70 1.78
341 342 6.644592 CCGGTTCAACAACAAATTTCACATAT 59.355 34.615 0.00 0.00 33.70 1.78
342 343 5.980116 CCGGTTCAACAACAAATTTCACATA 59.020 36.000 0.00 0.00 33.70 2.29
343 344 4.808364 CCGGTTCAACAACAAATTTCACAT 59.192 37.500 0.00 0.00 33.70 3.21
344 345 4.177026 CCGGTTCAACAACAAATTTCACA 58.823 39.130 0.00 0.00 33.70 3.58
345 346 4.177783 ACCGGTTCAACAACAAATTTCAC 58.822 39.130 0.00 0.00 33.70 3.18
346 347 4.457834 ACCGGTTCAACAACAAATTTCA 57.542 36.364 0.00 0.00 33.70 2.69
347 348 5.404066 CCATACCGGTTCAACAACAAATTTC 59.596 40.000 15.04 0.00 33.70 2.17
348 349 5.293560 CCATACCGGTTCAACAACAAATTT 58.706 37.500 15.04 0.00 33.70 1.82
349 350 4.262249 CCCATACCGGTTCAACAACAAATT 60.262 41.667 15.04 0.00 33.70 1.82
350 351 3.257127 CCCATACCGGTTCAACAACAAAT 59.743 43.478 15.04 0.00 33.70 2.32
351 352 2.623889 CCCATACCGGTTCAACAACAAA 59.376 45.455 15.04 0.00 33.70 2.83
352 353 2.231529 CCCATACCGGTTCAACAACAA 58.768 47.619 15.04 0.00 33.70 2.83
353 354 1.898902 CCCATACCGGTTCAACAACA 58.101 50.000 15.04 0.00 33.70 3.33
354 355 0.524414 GCCCATACCGGTTCAACAAC 59.476 55.000 15.04 0.00 0.00 3.32
355 356 0.609681 GGCCCATACCGGTTCAACAA 60.610 55.000 15.04 0.00 0.00 2.83
456 457 1.906333 TGTGTGGCGGCTCTCACTA 60.906 57.895 23.26 13.09 35.15 2.74
510 512 3.711086 CCTCTGATACCATGTTGACTCG 58.289 50.000 0.00 0.00 0.00 4.18
844 880 0.752743 AAGGAACAGCAGCAGCAACA 60.753 50.000 3.17 0.00 45.49 3.33
916 952 0.752054 CCAACAACAACAGCCCACAT 59.248 50.000 0.00 0.00 0.00 3.21
926 962 2.925724 CCTCTACACACCCAACAACAA 58.074 47.619 0.00 0.00 0.00 2.83
1108 1144 4.397348 GTCCATGGACGGCAGTTT 57.603 55.556 28.52 0.00 35.30 2.66
1509 1545 0.824109 CCAGAGGGTCGCAGTTATCA 59.176 55.000 0.00 0.00 0.00 2.15
1582 1618 2.016318 CTCCAACAGTTTCAGCACACA 58.984 47.619 0.00 0.00 0.00 3.72
1872 1908 2.600729 CCTGCCTCTGCCAGTTCCT 61.601 63.158 0.00 0.00 36.33 3.36
1971 2007 2.040464 TGAGCCCTCTGATCCCCC 60.040 66.667 0.00 0.00 0.00 5.40
2250 2287 2.590114 GCCAACCCCTACGACAGGT 61.590 63.158 7.00 0.00 43.80 4.00
2420 2457 0.764369 AGTCCCAACTGTCTGGCTCA 60.764 55.000 4.20 0.00 34.88 4.26
2824 2862 5.827797 TCTGAAAACAGCTAAACACCTCATT 59.172 36.000 0.00 0.00 0.00 2.57
2853 2891 4.597004 ACTGATTCTTCATCAAGGCATGT 58.403 39.130 0.00 0.00 41.66 3.21
2863 2901 4.401022 TGCACCTGAAACTGATTCTTCAT 58.599 39.130 0.00 0.00 38.92 2.57
3095 3133 3.132824 CAGGTATGTGGCTGTCATCACTA 59.867 47.826 7.63 0.00 35.15 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.