Multiple sequence alignment - TraesCS7B01G263900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G263900 chr7B 100.000 3143 0 0 1 3143 484528567 484525425 0.000000e+00 5805.0
1 TraesCS7B01G263900 chr7B 97.175 708 20 0 1 708 191696746 191696039 0.000000e+00 1197.0
2 TraesCS7B01G263900 chr7B 96.049 329 13 0 2356 2684 6298482 6298154 1.280000e-148 536.0
3 TraesCS7B01G263900 chr7D 95.229 1635 65 10 711 2343 461667430 461665807 0.000000e+00 2575.0
4 TraesCS7B01G263900 chr7A 90.931 1643 88 28 730 2355 538377901 538379499 0.000000e+00 2152.0
5 TraesCS7B01G263900 chr7A 72.811 434 74 28 2691 3093 538379501 538379921 1.190000e-19 108.0
6 TraesCS7B01G263900 chr4A 97.740 708 16 0 1 708 536193584 536192877 0.000000e+00 1219.0
7 TraesCS7B01G263900 chr6A 97.599 708 16 1 1 708 101836271 101835565 0.000000e+00 1212.0
8 TraesCS7B01G263900 chr1A 97.458 708 18 0 1 708 469840865 469840158 0.000000e+00 1208.0
9 TraesCS7B01G263900 chr1A 78.621 145 27 2 2992 3135 501641963 501641822 3.340000e-15 93.5
10 TraesCS7B01G263900 chr4B 97.458 708 17 1 1 708 500273751 500274457 0.000000e+00 1206.0
11 TraesCS7B01G263900 chr4B 97.316 708 19 0 1 708 601730387 601729680 0.000000e+00 1203.0
12 TraesCS7B01G263900 chr4B 96.049 329 12 1 2355 2683 511108828 511108501 4.610000e-148 534.0
13 TraesCS7B01G263900 chr5B 97.316 708 19 0 1 708 457060956 457060249 0.000000e+00 1203.0
14 TraesCS7B01G263900 chr5B 85.567 291 31 5 1007 1288 391647501 391647789 8.520000e-76 294.0
15 TraesCS7B01G263900 chr3A 97.175 708 20 0 1 708 639183206 639183913 0.000000e+00 1197.0
16 TraesCS7B01G263900 chr3A 77.966 295 52 10 2819 3109 215200889 215200604 4.170000e-39 172.0
17 TraesCS7B01G263900 chr5A 97.175 708 19 1 1 708 673527460 673528166 0.000000e+00 1195.0
18 TraesCS7B01G263900 chr5A 94.955 337 15 2 2356 2691 399772394 399772059 7.720000e-146 527.0
19 TraesCS7B01G263900 chr5A 73.145 283 65 10 2837 3115 708547679 708547954 1.200000e-14 91.6
20 TraesCS7B01G263900 chr2B 96.353 329 12 0 2356 2684 504945982 504945654 2.760000e-150 542.0
21 TraesCS7B01G263900 chr2B 96.341 328 12 0 2356 2683 686619185 686618858 9.920000e-150 540.0
22 TraesCS7B01G263900 chr2B 95.522 335 13 2 2351 2684 540490217 540489884 4.610000e-148 534.0
23 TraesCS7B01G263900 chr2B 76.995 213 39 9 2886 3094 477539078 477539284 2.560000e-21 113.0
24 TraesCS7B01G263900 chr1B 96.037 328 13 0 2356 2683 535495477 535495150 4.610000e-148 534.0
25 TraesCS7B01G263900 chr1B 76.190 147 29 6 2978 3122 683239820 683239678 4.350000e-09 73.1
26 TraesCS7B01G263900 chr1D 96.037 328 12 1 2356 2683 156265922 156265596 1.660000e-147 532.0
27 TraesCS7B01G263900 chr1D 75.455 330 71 8 2795 3122 490499202 490498881 5.430000e-33 152.0
28 TraesCS7B01G263900 chr3D 95.758 330 13 1 2354 2683 7429107 7428779 5.970000e-147 531.0
29 TraesCS7B01G263900 chr5D 81.985 272 37 6 942 1204 334704364 334704632 1.470000e-53 220.0
30 TraesCS7B01G263900 chr5D 75.873 315 63 8 2812 3123 438821090 438821394 7.020000e-32 148.0
31 TraesCS7B01G263900 chr6B 77.863 262 51 5 2844 3102 462550894 462551151 4.200000e-34 156.0
32 TraesCS7B01G263900 chr2A 73.021 341 73 13 2794 3124 62393424 62393755 5.550000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G263900 chr7B 484525425 484528567 3142 True 5805 5805 100.000 1 3143 1 chr7B.!!$R3 3142
1 TraesCS7B01G263900 chr7B 191696039 191696746 707 True 1197 1197 97.175 1 708 1 chr7B.!!$R2 707
2 TraesCS7B01G263900 chr7D 461665807 461667430 1623 True 2575 2575 95.229 711 2343 1 chr7D.!!$R1 1632
3 TraesCS7B01G263900 chr7A 538377901 538379921 2020 False 1130 2152 81.871 730 3093 2 chr7A.!!$F1 2363
4 TraesCS7B01G263900 chr4A 536192877 536193584 707 True 1219 1219 97.740 1 708 1 chr4A.!!$R1 707
5 TraesCS7B01G263900 chr6A 101835565 101836271 706 True 1212 1212 97.599 1 708 1 chr6A.!!$R1 707
6 TraesCS7B01G263900 chr1A 469840158 469840865 707 True 1208 1208 97.458 1 708 1 chr1A.!!$R1 707
7 TraesCS7B01G263900 chr4B 500273751 500274457 706 False 1206 1206 97.458 1 708 1 chr4B.!!$F1 707
8 TraesCS7B01G263900 chr4B 601729680 601730387 707 True 1203 1203 97.316 1 708 1 chr4B.!!$R2 707
9 TraesCS7B01G263900 chr5B 457060249 457060956 707 True 1203 1203 97.316 1 708 1 chr5B.!!$R1 707
10 TraesCS7B01G263900 chr3A 639183206 639183913 707 False 1197 1197 97.175 1 708 1 chr3A.!!$F1 707
11 TraesCS7B01G263900 chr5A 673527460 673528166 706 False 1195 1195 97.175 1 708 1 chr5A.!!$F1 707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 856 0.39113 GAGGATACCAAGCACGCACA 60.391 55.0 0.0 0.0 37.17 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2665 2682 0.115745 TGTACTCCCTCCTTTCCGGT 59.884 55.0 0.0 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
489 491 2.952978 TCCTTAGAGCGAATGAGAGACC 59.047 50.000 0.00 0.00 0.00 3.85
729 731 5.652744 CGAAGTTTTCTCGGAAAGAAGAA 57.347 39.130 0.50 0.00 44.69 2.52
730 732 5.433005 CGAAGTTTTCTCGGAAAGAAGAAC 58.567 41.667 0.50 0.00 44.69 3.01
731 733 5.006358 CGAAGTTTTCTCGGAAAGAAGAACA 59.994 40.000 11.63 0.00 44.69 3.18
732 734 6.456449 CGAAGTTTTCTCGGAAAGAAGAACAA 60.456 38.462 11.63 0.00 44.69 2.83
733 735 6.753107 AGTTTTCTCGGAAAGAAGAACAAA 57.247 33.333 11.63 0.00 44.69 2.83
777 779 1.153429 GCCGCCACGAATTAGGAGT 60.153 57.895 0.00 0.00 0.00 3.85
812 814 2.851102 AGAGCATGCCGCCCCTAT 60.851 61.111 15.66 0.00 44.04 2.57
817 819 4.275508 ATGCCGCCCCTATGCCAG 62.276 66.667 0.00 0.00 0.00 4.85
837 839 2.425312 AGTTCATGCTCTCCACTACGAG 59.575 50.000 0.00 0.00 0.00 4.18
854 856 0.391130 GAGGATACCAAGCACGCACA 60.391 55.000 0.00 0.00 37.17 4.57
1365 1372 1.807165 CAGCCTCGACACGGTCATG 60.807 63.158 5.15 0.00 32.09 3.07
1507 1520 4.648626 ACGACGACGAGGTCCCCA 62.649 66.667 15.32 0.00 42.66 4.96
1572 1585 0.966875 TGCTGTGCATGTTCATCCCC 60.967 55.000 0.00 0.00 31.71 4.81
1599 1612 0.253044 CCAAGAAGAAGCCGGGATCA 59.747 55.000 2.18 0.00 0.00 2.92
1922 1935 4.308458 TCCCACCAAGACGGCGTG 62.308 66.667 21.19 5.16 39.03 5.34
2220 2236 4.731612 CGAGTGGCAGCGCTGTCT 62.732 66.667 38.60 30.26 35.92 3.41
2249 2265 2.669240 GGGGTTGCTAGACGCCTT 59.331 61.111 9.67 0.00 46.07 4.35
2251 2267 1.003718 GGGTTGCTAGACGCCTTGT 60.004 57.895 0.00 0.00 38.05 3.16
2263 2279 1.066752 GCCTTGTTTTTCCGGCGTT 59.933 52.632 6.01 0.00 32.22 4.84
2267 2283 1.855978 CTTGTTTTTCCGGCGTTTTCC 59.144 47.619 6.01 0.00 0.00 3.13
2269 2285 1.202313 TGTTTTTCCGGCGTTTTCCAG 60.202 47.619 6.01 0.00 0.00 3.86
2272 2288 1.964552 TTTCCGGCGTTTTCCAGTTA 58.035 45.000 6.01 0.00 0.00 2.24
2295 2312 3.876914 TGTTCGATTGTCCATATTCCAGC 59.123 43.478 0.00 0.00 0.00 4.85
2307 2324 0.331278 ATTCCAGCCGACCAATTCCA 59.669 50.000 0.00 0.00 0.00 3.53
2315 2332 1.475280 CCGACCAATTCCAGACGACTA 59.525 52.381 0.00 0.00 0.00 2.59
2326 2343 3.839490 TCCAGACGACTATGGGGTTTTAA 59.161 43.478 0.00 0.00 37.19 1.52
2327 2344 3.937079 CCAGACGACTATGGGGTTTTAAC 59.063 47.826 0.00 0.00 32.63 2.01
2331 2348 5.046159 AGACGACTATGGGGTTTTAACATGA 60.046 40.000 0.00 0.00 0.00 3.07
2334 2351 6.317893 ACGACTATGGGGTTTTAACATGAATC 59.682 38.462 0.00 0.00 0.00 2.52
2346 2363 4.383850 AACATGAATCGAGGAGACAGAG 57.616 45.455 0.00 0.00 0.00 3.35
2347 2364 2.100584 ACATGAATCGAGGAGACAGAGC 59.899 50.000 0.00 0.00 0.00 4.09
2355 2372 1.892474 GAGGAGACAGAGCTGTGTTCT 59.108 52.381 18.67 15.49 44.39 3.01
2356 2373 3.085533 GAGGAGACAGAGCTGTGTTCTA 58.914 50.000 18.67 0.00 42.10 2.10
2357 2374 2.823154 AGGAGACAGAGCTGTGTTCTAC 59.177 50.000 18.67 15.90 40.48 2.59
2358 2375 2.823154 GGAGACAGAGCTGTGTTCTACT 59.177 50.000 18.67 10.25 45.05 2.57
2359 2376 3.119637 GGAGACAGAGCTGTGTTCTACTC 60.120 52.174 18.67 17.89 45.05 2.59
2360 2377 2.823154 AGACAGAGCTGTGTTCTACTCC 59.177 50.000 18.67 3.21 45.05 3.85
2361 2378 1.896465 ACAGAGCTGTGTTCTACTCCC 59.104 52.381 11.36 0.00 43.11 4.30
2362 2379 2.175202 CAGAGCTGTGTTCTACTCCCT 58.825 52.381 1.91 0.00 0.00 4.20
2363 2380 2.165437 CAGAGCTGTGTTCTACTCCCTC 59.835 54.545 1.91 0.00 0.00 4.30
2364 2381 2.171840 GAGCTGTGTTCTACTCCCTCA 58.828 52.381 0.00 0.00 0.00 3.86
2365 2382 2.763448 GAGCTGTGTTCTACTCCCTCAT 59.237 50.000 0.00 0.00 0.00 2.90
2366 2383 3.177228 AGCTGTGTTCTACTCCCTCATT 58.823 45.455 0.00 0.00 0.00 2.57
2367 2384 3.584848 AGCTGTGTTCTACTCCCTCATTT 59.415 43.478 0.00 0.00 0.00 2.32
2368 2385 3.935828 GCTGTGTTCTACTCCCTCATTTC 59.064 47.826 0.00 0.00 0.00 2.17
2369 2386 4.508662 CTGTGTTCTACTCCCTCATTTCC 58.491 47.826 0.00 0.00 0.00 3.13
2370 2387 3.056107 TGTGTTCTACTCCCTCATTTCCG 60.056 47.826 0.00 0.00 0.00 4.30
2371 2388 2.500098 TGTTCTACTCCCTCATTTCCGG 59.500 50.000 0.00 0.00 0.00 5.14
2372 2389 2.500504 GTTCTACTCCCTCATTTCCGGT 59.499 50.000 0.00 0.00 0.00 5.28
2373 2390 2.829023 TCTACTCCCTCATTTCCGGTT 58.171 47.619 0.00 0.00 0.00 4.44
2374 2391 3.178865 TCTACTCCCTCATTTCCGGTTT 58.821 45.455 0.00 0.00 0.00 3.27
2375 2392 4.355549 TCTACTCCCTCATTTCCGGTTTA 58.644 43.478 0.00 0.00 0.00 2.01
2376 2393 4.966805 TCTACTCCCTCATTTCCGGTTTAT 59.033 41.667 0.00 0.00 0.00 1.40
2377 2394 6.138263 TCTACTCCCTCATTTCCGGTTTATA 58.862 40.000 0.00 0.00 0.00 0.98
2378 2395 5.703730 ACTCCCTCATTTCCGGTTTATAA 57.296 39.130 0.00 0.00 0.00 0.98
2379 2396 5.681639 ACTCCCTCATTTCCGGTTTATAAG 58.318 41.667 0.00 0.00 0.00 1.73
2380 2397 5.043737 TCCCTCATTTCCGGTTTATAAGG 57.956 43.478 0.00 2.95 0.00 2.69
2381 2398 3.568430 CCCTCATTTCCGGTTTATAAGGC 59.432 47.826 0.00 0.00 0.00 4.35
2382 2399 4.461198 CCTCATTTCCGGTTTATAAGGCT 58.539 43.478 0.00 0.00 0.00 4.58
2383 2400 4.515567 CCTCATTTCCGGTTTATAAGGCTC 59.484 45.833 0.00 0.00 0.00 4.70
2384 2401 5.105567 TCATTTCCGGTTTATAAGGCTCA 57.894 39.130 0.00 0.00 0.00 4.26
2385 2402 5.502079 TCATTTCCGGTTTATAAGGCTCAA 58.498 37.500 0.00 0.00 0.00 3.02
2386 2403 6.126409 TCATTTCCGGTTTATAAGGCTCAAT 58.874 36.000 0.00 0.00 0.00 2.57
2387 2404 6.605594 TCATTTCCGGTTTATAAGGCTCAATT 59.394 34.615 0.00 0.00 0.00 2.32
2388 2405 6.445357 TTTCCGGTTTATAAGGCTCAATTC 57.555 37.500 0.00 0.00 0.00 2.17
2389 2406 5.105567 TCCGGTTTATAAGGCTCAATTCA 57.894 39.130 0.00 0.00 0.00 2.57
2390 2407 5.502079 TCCGGTTTATAAGGCTCAATTCAA 58.498 37.500 0.00 0.00 0.00 2.69
2391 2408 5.946972 TCCGGTTTATAAGGCTCAATTCAAA 59.053 36.000 0.00 0.00 0.00 2.69
2392 2409 6.434652 TCCGGTTTATAAGGCTCAATTCAAAA 59.565 34.615 0.00 0.00 0.00 2.44
2393 2410 7.039644 TCCGGTTTATAAGGCTCAATTCAAAAA 60.040 33.333 0.00 0.00 0.00 1.94
2394 2411 7.763985 CCGGTTTATAAGGCTCAATTCAAAAAT 59.236 33.333 0.00 0.00 0.00 1.82
2395 2412 8.807581 CGGTTTATAAGGCTCAATTCAAAAATC 58.192 33.333 0.00 0.00 0.00 2.17
2396 2413 9.875691 GGTTTATAAGGCTCAATTCAAAAATCT 57.124 29.630 0.00 0.00 0.00 2.40
2401 2418 6.845758 AGGCTCAATTCAAAAATCTCATCA 57.154 33.333 0.00 0.00 0.00 3.07
2402 2419 7.235935 AGGCTCAATTCAAAAATCTCATCAA 57.764 32.000 0.00 0.00 0.00 2.57
2403 2420 7.095270 AGGCTCAATTCAAAAATCTCATCAAC 58.905 34.615 0.00 0.00 0.00 3.18
2404 2421 6.312180 GGCTCAATTCAAAAATCTCATCAACC 59.688 38.462 0.00 0.00 0.00 3.77
2405 2422 6.869913 GCTCAATTCAAAAATCTCATCAACCA 59.130 34.615 0.00 0.00 0.00 3.67
2406 2423 7.385752 GCTCAATTCAAAAATCTCATCAACCAA 59.614 33.333 0.00 0.00 0.00 3.67
2407 2424 8.821147 TCAATTCAAAAATCTCATCAACCAAG 57.179 30.769 0.00 0.00 0.00 3.61
2408 2425 7.874016 TCAATTCAAAAATCTCATCAACCAAGG 59.126 33.333 0.00 0.00 0.00 3.61
2409 2426 6.729690 TTCAAAAATCTCATCAACCAAGGT 57.270 33.333 0.00 0.00 0.00 3.50
2410 2427 7.831691 TTCAAAAATCTCATCAACCAAGGTA 57.168 32.000 0.00 0.00 0.00 3.08
2411 2428 7.452880 TCAAAAATCTCATCAACCAAGGTAG 57.547 36.000 0.00 0.00 0.00 3.18
2412 2429 7.230747 TCAAAAATCTCATCAACCAAGGTAGA 58.769 34.615 0.00 0.00 0.00 2.59
2413 2430 7.890127 TCAAAAATCTCATCAACCAAGGTAGAT 59.110 33.333 0.00 0.00 0.00 1.98
2414 2431 7.636150 AAAATCTCATCAACCAAGGTAGATG 57.364 36.000 3.00 0.00 39.29 2.90
2415 2432 4.760530 TCTCATCAACCAAGGTAGATGG 57.239 45.455 0.00 0.00 43.84 3.51
2422 2439 2.698855 CCAAGGTAGATGGTGAGTGG 57.301 55.000 0.00 0.00 33.08 4.00
2423 2440 1.909302 CCAAGGTAGATGGTGAGTGGT 59.091 52.381 0.00 0.00 33.08 4.16
2424 2441 2.355108 CCAAGGTAGATGGTGAGTGGTG 60.355 54.545 0.00 0.00 33.08 4.17
2425 2442 2.567169 CAAGGTAGATGGTGAGTGGTGA 59.433 50.000 0.00 0.00 0.00 4.02
2426 2443 2.902608 AGGTAGATGGTGAGTGGTGAA 58.097 47.619 0.00 0.00 0.00 3.18
2427 2444 3.248024 AGGTAGATGGTGAGTGGTGAAA 58.752 45.455 0.00 0.00 0.00 2.69
2428 2445 3.846588 AGGTAGATGGTGAGTGGTGAAAT 59.153 43.478 0.00 0.00 0.00 2.17
2429 2446 5.030147 AGGTAGATGGTGAGTGGTGAAATA 58.970 41.667 0.00 0.00 0.00 1.40
2430 2447 5.104900 AGGTAGATGGTGAGTGGTGAAATAC 60.105 44.000 0.00 0.00 0.00 1.89
2444 2461 4.988540 GGTGAAATACCTTTTGGAGTTTGC 59.011 41.667 0.00 0.00 46.51 3.68
2445 2462 5.452636 GGTGAAATACCTTTTGGAGTTTGCA 60.453 40.000 0.00 0.00 46.51 4.08
2446 2463 6.045955 GTGAAATACCTTTTGGAGTTTGCAA 58.954 36.000 0.00 0.00 44.07 4.08
2447 2464 6.536941 GTGAAATACCTTTTGGAGTTTGCAAA 59.463 34.615 8.05 8.05 44.07 3.68
2448 2465 7.065204 GTGAAATACCTTTTGGAGTTTGCAAAA 59.935 33.333 14.67 7.96 43.65 2.44
2453 2470 3.608316 TTTGGAGTTTGCAAAAGCACT 57.392 38.095 14.67 7.40 34.76 4.40
2454 2471 2.869233 TGGAGTTTGCAAAAGCACTC 57.131 45.000 14.67 16.17 35.82 3.51
2455 2472 2.098614 TGGAGTTTGCAAAAGCACTCA 58.901 42.857 23.59 11.79 37.92 3.41
2456 2473 2.495270 TGGAGTTTGCAAAAGCACTCAA 59.505 40.909 23.59 14.39 37.92 3.02
2457 2474 3.056250 TGGAGTTTGCAAAAGCACTCAAA 60.056 39.130 23.59 12.79 37.92 2.69
2458 2475 4.122046 GGAGTTTGCAAAAGCACTCAAAT 58.878 39.130 23.59 0.00 37.92 2.32
2459 2476 4.571984 GGAGTTTGCAAAAGCACTCAAATT 59.428 37.500 23.59 0.00 37.92 1.82
2460 2477 5.752955 GGAGTTTGCAAAAGCACTCAAATTA 59.247 36.000 23.59 0.00 37.92 1.40
2461 2478 6.257630 GGAGTTTGCAAAAGCACTCAAATTAA 59.742 34.615 23.59 0.00 37.92 1.40
2462 2479 7.041848 GGAGTTTGCAAAAGCACTCAAATTAAT 60.042 33.333 23.59 0.00 37.92 1.40
2463 2480 7.632721 AGTTTGCAAAAGCACTCAAATTAATG 58.367 30.769 14.67 0.00 32.07 1.90
2464 2481 7.495279 AGTTTGCAAAAGCACTCAAATTAATGA 59.505 29.630 14.67 0.00 32.07 2.57
2465 2482 7.966246 TTGCAAAAGCACTCAAATTAATGAT 57.034 28.000 0.00 0.00 0.00 2.45
2466 2483 7.966246 TGCAAAAGCACTCAAATTAATGATT 57.034 28.000 0.00 0.00 0.00 2.57
2467 2484 8.380743 TGCAAAAGCACTCAAATTAATGATTT 57.619 26.923 0.00 0.00 38.49 2.17
2468 2485 8.838365 TGCAAAAGCACTCAAATTAATGATTTT 58.162 25.926 0.00 0.00 40.28 1.82
2544 2561 7.718272 GCATAAATTACATGCATTGGTCAAT 57.282 32.000 16.27 0.00 46.47 2.57
2545 2562 8.145316 GCATAAATTACATGCATTGGTCAATT 57.855 30.769 16.27 0.00 46.47 2.32
2546 2563 8.614346 GCATAAATTACATGCATTGGTCAATTT 58.386 29.630 16.27 7.43 46.47 1.82
2549 2566 8.851541 AAATTACATGCATTGGTCAATTTTCT 57.148 26.923 0.00 0.00 28.85 2.52
2550 2567 8.483307 AATTACATGCATTGGTCAATTTTCTC 57.517 30.769 0.00 0.00 0.00 2.87
2551 2568 5.733620 ACATGCATTGGTCAATTTTCTCT 57.266 34.783 0.00 0.00 0.00 3.10
2552 2569 6.105397 ACATGCATTGGTCAATTTTCTCTT 57.895 33.333 0.00 0.00 0.00 2.85
2553 2570 7.230849 ACATGCATTGGTCAATTTTCTCTTA 57.769 32.000 0.00 0.00 0.00 2.10
2554 2571 7.669427 ACATGCATTGGTCAATTTTCTCTTAA 58.331 30.769 0.00 0.00 0.00 1.85
2555 2572 8.316214 ACATGCATTGGTCAATTTTCTCTTAAT 58.684 29.630 0.00 0.00 0.00 1.40
2556 2573 9.806203 CATGCATTGGTCAATTTTCTCTTAATA 57.194 29.630 0.00 0.00 0.00 0.98
2557 2574 9.807649 ATGCATTGGTCAATTTTCTCTTAATAC 57.192 29.630 0.00 0.00 0.00 1.89
2558 2575 9.023962 TGCATTGGTCAATTTTCTCTTAATACT 57.976 29.630 0.00 0.00 0.00 2.12
2559 2576 9.860898 GCATTGGTCAATTTTCTCTTAATACTT 57.139 29.630 0.00 0.00 0.00 2.24
2561 2578 9.860898 ATTGGTCAATTTTCTCTTAATACTTGC 57.139 29.630 0.00 0.00 0.00 4.01
2562 2579 8.402798 TGGTCAATTTTCTCTTAATACTTGCA 57.597 30.769 0.00 0.00 0.00 4.08
2563 2580 9.023962 TGGTCAATTTTCTCTTAATACTTGCAT 57.976 29.630 0.00 0.00 0.00 3.96
2564 2581 9.860898 GGTCAATTTTCTCTTAATACTTGCATT 57.139 29.630 0.00 0.00 0.00 3.56
2585 2602 7.241663 CATTCAATGATTTAATGCACCTTGG 57.758 36.000 0.00 0.00 0.00 3.61
2586 2603 6.602410 TTCAATGATTTAATGCACCTTGGA 57.398 33.333 0.00 0.00 0.00 3.53
2587 2604 6.602410 TCAATGATTTAATGCACCTTGGAA 57.398 33.333 0.00 0.00 0.00 3.53
2588 2605 7.185318 TCAATGATTTAATGCACCTTGGAAT 57.815 32.000 0.00 0.00 0.00 3.01
2589 2606 7.267128 TCAATGATTTAATGCACCTTGGAATC 58.733 34.615 0.00 0.00 0.00 2.52
2590 2607 7.124599 TCAATGATTTAATGCACCTTGGAATCT 59.875 33.333 0.00 0.00 0.00 2.40
2591 2608 6.211587 TGATTTAATGCACCTTGGAATCTG 57.788 37.500 0.00 0.00 0.00 2.90
2592 2609 5.951148 TGATTTAATGCACCTTGGAATCTGA 59.049 36.000 0.00 0.00 0.00 3.27
2593 2610 6.436847 TGATTTAATGCACCTTGGAATCTGAA 59.563 34.615 0.00 0.00 0.00 3.02
2594 2611 5.643379 TTAATGCACCTTGGAATCTGAAC 57.357 39.130 0.00 0.00 0.00 3.18
2595 2612 2.655090 TGCACCTTGGAATCTGAACA 57.345 45.000 0.00 0.00 0.00 3.18
2596 2613 3.159213 TGCACCTTGGAATCTGAACAT 57.841 42.857 0.00 0.00 0.00 2.71
2597 2614 2.821378 TGCACCTTGGAATCTGAACATG 59.179 45.455 0.00 0.00 0.00 3.21
2598 2615 2.821969 GCACCTTGGAATCTGAACATGT 59.178 45.455 0.00 0.00 0.00 3.21
2599 2616 3.366679 GCACCTTGGAATCTGAACATGTG 60.367 47.826 0.00 0.00 0.00 3.21
2600 2617 4.074259 CACCTTGGAATCTGAACATGTGA 58.926 43.478 0.00 0.00 0.00 3.58
2601 2618 4.703575 CACCTTGGAATCTGAACATGTGAT 59.296 41.667 0.00 0.00 0.00 3.06
2602 2619 4.703575 ACCTTGGAATCTGAACATGTGATG 59.296 41.667 0.00 0.00 0.00 3.07
2603 2620 4.097437 CCTTGGAATCTGAACATGTGATGG 59.903 45.833 0.00 0.00 33.60 3.51
2604 2621 3.623703 TGGAATCTGAACATGTGATGGG 58.376 45.455 0.00 0.00 33.60 4.00
2605 2622 3.266513 TGGAATCTGAACATGTGATGGGA 59.733 43.478 0.00 0.00 33.60 4.37
2606 2623 4.263860 TGGAATCTGAACATGTGATGGGAA 60.264 41.667 0.00 0.00 33.60 3.97
2607 2624 4.706476 GGAATCTGAACATGTGATGGGAAA 59.294 41.667 0.00 0.00 33.60 3.13
2608 2625 5.393461 GGAATCTGAACATGTGATGGGAAAC 60.393 44.000 0.00 0.00 33.60 2.78
2609 2626 4.097551 TCTGAACATGTGATGGGAAACA 57.902 40.909 0.00 0.00 33.60 2.83
2610 2627 4.468713 TCTGAACATGTGATGGGAAACAA 58.531 39.130 0.00 0.00 33.60 2.83
2611 2628 4.278170 TCTGAACATGTGATGGGAAACAAC 59.722 41.667 0.00 0.00 33.60 3.32
2612 2629 3.320541 TGAACATGTGATGGGAAACAACC 59.679 43.478 0.00 0.00 33.60 3.77
2613 2630 2.956132 ACATGTGATGGGAAACAACCA 58.044 42.857 0.00 0.00 43.22 3.67
2614 2631 3.303938 ACATGTGATGGGAAACAACCAA 58.696 40.909 0.00 0.00 42.17 3.67
2615 2632 3.708631 ACATGTGATGGGAAACAACCAAA 59.291 39.130 0.00 0.00 42.17 3.28
2616 2633 4.347583 ACATGTGATGGGAAACAACCAAAT 59.652 37.500 0.00 0.00 42.17 2.32
2617 2634 5.163216 ACATGTGATGGGAAACAACCAAATT 60.163 36.000 0.00 0.00 42.17 1.82
2618 2635 6.042552 ACATGTGATGGGAAACAACCAAATTA 59.957 34.615 0.00 0.00 42.17 1.40
2619 2636 6.485830 TGTGATGGGAAACAACCAAATTAA 57.514 33.333 0.00 0.00 42.17 1.40
2620 2637 6.520272 TGTGATGGGAAACAACCAAATTAAG 58.480 36.000 0.00 0.00 42.17 1.85
2621 2638 5.408299 GTGATGGGAAACAACCAAATTAAGC 59.592 40.000 0.00 0.00 42.17 3.09
2622 2639 4.344359 TGGGAAACAACCAAATTAAGCC 57.656 40.909 0.00 0.00 34.44 4.35
2623 2640 3.970640 TGGGAAACAACCAAATTAAGCCT 59.029 39.130 0.00 0.00 34.44 4.58
2624 2641 4.410555 TGGGAAACAACCAAATTAAGCCTT 59.589 37.500 0.00 0.00 34.44 4.35
2625 2642 5.602978 TGGGAAACAACCAAATTAAGCCTTA 59.397 36.000 0.00 0.00 34.44 2.69
2626 2643 6.271159 TGGGAAACAACCAAATTAAGCCTTAT 59.729 34.615 0.00 0.00 34.44 1.73
2627 2644 7.455008 TGGGAAACAACCAAATTAAGCCTTATA 59.545 33.333 0.00 0.00 34.44 0.98
2628 2645 8.315482 GGGAAACAACCAAATTAAGCCTTATAA 58.685 33.333 0.00 0.00 0.00 0.98
2629 2646 9.713713 GGAAACAACCAAATTAAGCCTTATAAA 57.286 29.630 0.00 0.00 0.00 1.40
2633 2650 9.665719 ACAACCAAATTAAGCCTTATAAAATGG 57.334 29.630 0.00 0.00 32.54 3.16
2634 2651 9.883142 CAACCAAATTAAGCCTTATAAAATGGA 57.117 29.630 0.00 0.00 31.58 3.41
2668 2685 9.594478 AAATTTTGAAATAAGCCCTATAAACCG 57.406 29.630 0.00 0.00 0.00 4.44
2669 2686 6.702716 TTTGAAATAAGCCCTATAAACCGG 57.297 37.500 0.00 0.00 0.00 5.28
2670 2687 5.633655 TGAAATAAGCCCTATAAACCGGA 57.366 39.130 9.46 0.00 0.00 5.14
2671 2688 6.003859 TGAAATAAGCCCTATAAACCGGAA 57.996 37.500 9.46 0.00 0.00 4.30
2672 2689 6.424883 TGAAATAAGCCCTATAAACCGGAAA 58.575 36.000 9.46 0.00 0.00 3.13
2673 2690 6.544564 TGAAATAAGCCCTATAAACCGGAAAG 59.455 38.462 9.46 0.00 0.00 2.62
2675 2692 2.484602 AGCCCTATAAACCGGAAAGGA 58.515 47.619 9.46 0.00 45.00 3.36
2676 2693 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
2677 2694 2.486727 GCCCTATAAACCGGAAAGGAGG 60.487 54.545 9.46 9.03 45.00 4.30
2678 2695 2.105993 CCCTATAAACCGGAAAGGAGGG 59.894 54.545 9.46 14.71 45.00 4.30
2679 2696 3.043418 CCTATAAACCGGAAAGGAGGGA 58.957 50.000 9.46 0.00 45.00 4.20
2680 2697 3.071167 CCTATAAACCGGAAAGGAGGGAG 59.929 52.174 9.46 0.00 45.00 4.30
2681 2698 2.034436 TAAACCGGAAAGGAGGGAGT 57.966 50.000 9.46 0.00 45.00 3.85
2682 2699 2.034436 AAACCGGAAAGGAGGGAGTA 57.966 50.000 9.46 0.00 45.00 2.59
2683 2700 1.273759 AACCGGAAAGGAGGGAGTAC 58.726 55.000 9.46 0.00 45.00 2.73
2684 2701 0.115745 ACCGGAAAGGAGGGAGTACA 59.884 55.000 9.46 0.00 45.00 2.90
2685 2702 0.824759 CCGGAAAGGAGGGAGTACAG 59.175 60.000 0.00 0.00 45.00 2.74
2686 2703 1.558233 CGGAAAGGAGGGAGTACAGT 58.442 55.000 0.00 0.00 0.00 3.55
2687 2704 1.900486 CGGAAAGGAGGGAGTACAGTT 59.100 52.381 0.00 0.00 0.00 3.16
2688 2705 2.353803 CGGAAAGGAGGGAGTACAGTTG 60.354 54.545 0.00 0.00 0.00 3.16
2689 2706 2.638363 GGAAAGGAGGGAGTACAGTTGT 59.362 50.000 0.00 0.00 0.00 3.32
2731 2748 5.377358 CGTGTGAAAATCAGCTCTTGTTAG 58.623 41.667 0.00 0.00 0.00 2.34
2734 2772 7.571983 CGTGTGAAAATCAGCTCTTGTTAGAAT 60.572 37.037 0.00 0.00 0.00 2.40
2737 2775 7.536622 GTGAAAATCAGCTCTTGTTAGAATGTG 59.463 37.037 0.00 0.00 0.00 3.21
2740 2778 7.934855 AATCAGCTCTTGTTAGAATGTGATT 57.065 32.000 0.00 0.00 33.52 2.57
2765 2804 0.759060 GCTCCCCGCCCCAATTTATT 60.759 55.000 0.00 0.00 0.00 1.40
2769 2808 1.138069 CCCCGCCCCAATTTATTTCAC 59.862 52.381 0.00 0.00 0.00 3.18
2771 2810 1.202359 CCGCCCCAATTTATTTCACGG 60.202 52.381 0.00 0.00 0.00 4.94
2773 2812 2.478879 CGCCCCAATTTATTTCACGGAC 60.479 50.000 0.00 0.00 0.00 4.79
2806 2846 4.336433 CGGGTGCAGTTTGATCTATTCATT 59.664 41.667 0.00 0.00 33.34 2.57
2808 2848 6.293081 CGGGTGCAGTTTGATCTATTCATTAG 60.293 42.308 0.00 0.00 33.34 1.73
2810 2850 7.283127 GGGTGCAGTTTGATCTATTCATTAGAA 59.717 37.037 0.00 0.00 40.32 2.10
2870 2910 3.594603 ACAGCTATGTGTGTAGACCAC 57.405 47.619 0.00 0.00 44.78 4.16
2878 2918 1.749634 GTGTGTAGACCACCTAGCGAT 59.250 52.381 0.00 0.00 43.85 4.58
2879 2919 2.947652 GTGTGTAGACCACCTAGCGATA 59.052 50.000 0.00 0.00 43.85 2.92
2882 2922 2.615447 TGTAGACCACCTAGCGATAACG 59.385 50.000 0.00 0.00 42.93 3.18
2884 2924 2.584236 AGACCACCTAGCGATAACGAT 58.416 47.619 0.00 0.00 42.66 3.73
2891 2931 3.568853 ACCTAGCGATAACGATAAGCACT 59.431 43.478 0.00 0.00 39.80 4.40
2892 2932 3.914966 CCTAGCGATAACGATAAGCACTG 59.085 47.826 0.00 0.00 39.80 3.66
2893 2933 2.743938 AGCGATAACGATAAGCACTGG 58.256 47.619 0.00 0.00 42.66 4.00
2901 2941 0.878086 GATAAGCACTGGAGCGAGCC 60.878 60.000 0.00 0.00 40.15 4.70
2902 2942 2.635229 ATAAGCACTGGAGCGAGCCG 62.635 60.000 0.00 0.00 40.15 5.52
2905 2945 2.507992 CACTGGAGCGAGCCGAAG 60.508 66.667 0.00 0.00 0.00 3.79
2906 2946 2.676822 ACTGGAGCGAGCCGAAGA 60.677 61.111 0.00 0.00 0.00 2.87
2907 2947 2.055042 ACTGGAGCGAGCCGAAGAT 61.055 57.895 0.00 0.00 0.00 2.40
2908 2948 1.591059 CTGGAGCGAGCCGAAGATG 60.591 63.158 0.00 0.00 0.00 2.90
2909 2949 2.290122 CTGGAGCGAGCCGAAGATGT 62.290 60.000 0.00 0.00 0.00 3.06
2911 2951 2.510238 AGCGAGCCGAAGATGTGC 60.510 61.111 0.00 0.00 0.00 4.57
2912 2952 3.567797 GCGAGCCGAAGATGTGCC 61.568 66.667 0.00 0.00 0.00 5.01
2913 2953 2.125552 CGAGCCGAAGATGTGCCA 60.126 61.111 0.00 0.00 0.00 4.92
2915 2955 2.045926 AGCCGAAGATGTGCCACC 60.046 61.111 0.00 0.00 0.00 4.61
2916 2956 3.499737 GCCGAAGATGTGCCACCG 61.500 66.667 0.00 0.00 0.00 4.94
2923 2963 1.447838 GATGTGCCACCGTCATCGT 60.448 57.895 0.00 0.00 35.01 3.73
2926 2966 2.994995 TGCCACCGTCATCGTCCT 60.995 61.111 0.00 0.00 35.01 3.85
2933 2973 1.320344 CCGTCATCGTCCTTCCCTCA 61.320 60.000 0.00 0.00 35.01 3.86
2934 2974 0.101399 CGTCATCGTCCTTCCCTCAG 59.899 60.000 0.00 0.00 0.00 3.35
2935 2975 0.179097 GTCATCGTCCTTCCCTCAGC 60.179 60.000 0.00 0.00 0.00 4.26
2940 2980 1.985116 GTCCTTCCCTCAGCGGAGT 60.985 63.158 13.02 0.00 39.64 3.85
2941 2981 1.984570 TCCTTCCCTCAGCGGAGTG 60.985 63.158 13.02 1.10 39.64 3.51
2948 2988 0.318441 CCTCAGCGGAGTGAGACAAA 59.682 55.000 13.02 0.00 46.02 2.83
2956 2996 3.724374 CGGAGTGAGACAAACCTTGTTA 58.276 45.455 0.00 0.00 45.52 2.41
2958 2998 5.475719 CGGAGTGAGACAAACCTTGTTATA 58.524 41.667 0.00 0.00 45.52 0.98
2961 3001 7.576287 CGGAGTGAGACAAACCTTGTTATAGTA 60.576 40.741 0.00 0.00 45.52 1.82
2964 3004 9.036980 AGTGAGACAAACCTTGTTATAGTAGAT 57.963 33.333 0.00 0.00 45.52 1.98
2986 3026 7.600065 AGATAGTTTAGAAGTCGTTGTGCTAA 58.400 34.615 0.00 0.00 0.00 3.09
2987 3027 8.086522 AGATAGTTTAGAAGTCGTTGTGCTAAA 58.913 33.333 0.00 0.00 0.00 1.85
2988 3028 6.526566 AGTTTAGAAGTCGTTGTGCTAAAG 57.473 37.500 0.00 0.00 33.29 1.85
2989 3029 6.047231 AGTTTAGAAGTCGTTGTGCTAAAGT 58.953 36.000 0.00 0.00 33.29 2.66
2990 3030 6.537660 AGTTTAGAAGTCGTTGTGCTAAAGTT 59.462 34.615 0.00 0.00 33.32 2.66
2992 3032 3.808174 AGAAGTCGTTGTGCTAAAGTTCC 59.192 43.478 0.00 0.00 0.00 3.62
2994 3034 3.740115 AGTCGTTGTGCTAAAGTTCCAT 58.260 40.909 0.00 0.00 0.00 3.41
2997 3037 4.927425 GTCGTTGTGCTAAAGTTCCATAGA 59.073 41.667 0.00 0.00 0.00 1.98
3020 3060 7.481642 AGAACTATCACACTAGAATAACACCG 58.518 38.462 0.00 0.00 0.00 4.94
3021 3061 5.589192 ACTATCACACTAGAATAACACCGC 58.411 41.667 0.00 0.00 0.00 5.68
3023 3063 2.563620 TCACACTAGAATAACACCGCCA 59.436 45.455 0.00 0.00 0.00 5.69
3025 3065 2.277084 CACTAGAATAACACCGCCACC 58.723 52.381 0.00 0.00 0.00 4.61
3037 3077 2.237751 CGCCACCGCCGATAAAGAG 61.238 63.158 0.00 0.00 0.00 2.85
3040 3080 1.287425 CCACCGCCGATAAAGAGAAC 58.713 55.000 0.00 0.00 0.00 3.01
3041 3081 1.404986 CCACCGCCGATAAAGAGAACA 60.405 52.381 0.00 0.00 0.00 3.18
3042 3082 2.550978 CACCGCCGATAAAGAGAACAT 58.449 47.619 0.00 0.00 0.00 2.71
3043 3083 3.491964 CCACCGCCGATAAAGAGAACATA 60.492 47.826 0.00 0.00 0.00 2.29
3044 3084 3.736252 CACCGCCGATAAAGAGAACATAG 59.264 47.826 0.00 0.00 0.00 2.23
3045 3085 3.635373 ACCGCCGATAAAGAGAACATAGA 59.365 43.478 0.00 0.00 0.00 1.98
3046 3086 4.281182 ACCGCCGATAAAGAGAACATAGAT 59.719 41.667 0.00 0.00 0.00 1.98
3048 3088 6.015688 ACCGCCGATAAAGAGAACATAGATTA 60.016 38.462 0.00 0.00 0.00 1.75
3053 3093 9.632807 CCGATAAAGAGAACATAGATTAGAAGG 57.367 37.037 0.00 0.00 0.00 3.46
3062 3103 7.570607 AGAACATAGATTAGAAGGATCCAACCT 59.429 37.037 15.82 9.96 42.69 3.50
3063 3104 8.798975 AACATAGATTAGAAGGATCCAACCTA 57.201 34.615 15.82 8.94 39.62 3.08
3072 3113 6.146760 AGAAGGATCCAACCTATAGACACAT 58.853 40.000 15.82 0.00 39.62 3.21
3073 3114 5.815233 AGGATCCAACCTATAGACACATG 57.185 43.478 15.82 0.00 38.65 3.21
3077 3118 5.006153 TCCAACCTATAGACACATGAACG 57.994 43.478 0.00 0.00 0.00 3.95
3080 3121 4.465632 ACCTATAGACACATGAACGCAA 57.534 40.909 0.00 0.00 0.00 4.85
3082 3123 4.630069 ACCTATAGACACATGAACGCAAAC 59.370 41.667 0.00 0.00 0.00 2.93
3093 3134 2.106418 GAACGCAAACGAACAAAGACC 58.894 47.619 0.00 0.00 43.93 3.85
3094 3135 0.027063 ACGCAAACGAACAAAGACCG 59.973 50.000 0.00 0.00 43.93 4.79
3095 3136 0.656205 CGCAAACGAACAAAGACCGG 60.656 55.000 0.00 0.00 43.93 5.28
3096 3137 0.658897 GCAAACGAACAAAGACCGGA 59.341 50.000 9.46 0.00 0.00 5.14
3097 3138 1.265905 GCAAACGAACAAAGACCGGAT 59.734 47.619 9.46 0.00 0.00 4.18
3098 3139 2.664698 GCAAACGAACAAAGACCGGATC 60.665 50.000 9.46 1.42 0.00 3.36
3099 3140 1.804601 AACGAACAAAGACCGGATCC 58.195 50.000 9.46 0.00 0.00 3.36
3100 3141 0.682852 ACGAACAAAGACCGGATCCA 59.317 50.000 9.46 0.00 0.00 3.41
3101 3142 1.076332 CGAACAAAGACCGGATCCAC 58.924 55.000 9.46 2.42 0.00 4.02
3102 3143 1.076332 GAACAAAGACCGGATCCACG 58.924 55.000 9.46 3.16 0.00 4.94
3103 3144 0.953960 AACAAAGACCGGATCCACGC 60.954 55.000 9.46 0.00 0.00 5.34
3104 3145 1.375396 CAAAGACCGGATCCACGCA 60.375 57.895 9.46 0.00 0.00 5.24
3105 3146 1.079127 AAAGACCGGATCCACGCAG 60.079 57.895 9.46 0.00 0.00 5.18
3106 3147 1.541310 AAAGACCGGATCCACGCAGA 61.541 55.000 9.46 0.00 0.00 4.26
3107 3148 1.330655 AAGACCGGATCCACGCAGAT 61.331 55.000 9.46 0.00 0.00 2.90
3108 3149 1.300233 GACCGGATCCACGCAGATC 60.300 63.158 9.46 6.71 41.69 2.75
3112 3153 4.445699 GATCCACGCAGATCCACC 57.554 61.111 4.32 0.00 37.31 4.61
3113 3154 1.522092 GATCCACGCAGATCCACCA 59.478 57.895 4.32 0.00 37.31 4.17
3114 3155 0.107703 GATCCACGCAGATCCACCAA 60.108 55.000 4.32 0.00 37.31 3.67
3115 3156 0.327924 ATCCACGCAGATCCACCAAA 59.672 50.000 0.00 0.00 0.00 3.28
3116 3157 0.327924 TCCACGCAGATCCACCAAAT 59.672 50.000 0.00 0.00 0.00 2.32
3117 3158 1.557371 TCCACGCAGATCCACCAAATA 59.443 47.619 0.00 0.00 0.00 1.40
3118 3159 1.670811 CCACGCAGATCCACCAAATAC 59.329 52.381 0.00 0.00 0.00 1.89
3119 3160 2.355197 CACGCAGATCCACCAAATACA 58.645 47.619 0.00 0.00 0.00 2.29
3120 3161 2.746904 CACGCAGATCCACCAAATACAA 59.253 45.455 0.00 0.00 0.00 2.41
3121 3162 3.190327 CACGCAGATCCACCAAATACAAA 59.810 43.478 0.00 0.00 0.00 2.83
3122 3163 3.190535 ACGCAGATCCACCAAATACAAAC 59.809 43.478 0.00 0.00 0.00 2.93
3123 3164 3.190327 CGCAGATCCACCAAATACAAACA 59.810 43.478 0.00 0.00 0.00 2.83
3124 3165 4.485163 GCAGATCCACCAAATACAAACAC 58.515 43.478 0.00 0.00 0.00 3.32
3125 3166 4.618227 GCAGATCCACCAAATACAAACACC 60.618 45.833 0.00 0.00 0.00 4.16
3126 3167 4.766891 CAGATCCACCAAATACAAACACCT 59.233 41.667 0.00 0.00 0.00 4.00
3127 3168 4.766891 AGATCCACCAAATACAAACACCTG 59.233 41.667 0.00 0.00 0.00 4.00
3128 3169 2.625790 TCCACCAAATACAAACACCTGC 59.374 45.455 0.00 0.00 0.00 4.85
3129 3170 2.288763 CCACCAAATACAAACACCTGCC 60.289 50.000 0.00 0.00 0.00 4.85
3130 3171 1.611491 ACCAAATACAAACACCTGCCG 59.389 47.619 0.00 0.00 0.00 5.69
3131 3172 1.883275 CCAAATACAAACACCTGCCGA 59.117 47.619 0.00 0.00 0.00 5.54
3132 3173 2.095263 CCAAATACAAACACCTGCCGAG 60.095 50.000 0.00 0.00 0.00 4.63
3133 3174 2.552315 CAAATACAAACACCTGCCGAGT 59.448 45.455 0.00 0.00 0.00 4.18
3134 3175 2.094762 ATACAAACACCTGCCGAGTC 57.905 50.000 0.00 0.00 0.00 3.36
3135 3176 1.045407 TACAAACACCTGCCGAGTCT 58.955 50.000 0.00 0.00 0.00 3.24
3136 3177 0.249911 ACAAACACCTGCCGAGTCTC 60.250 55.000 0.00 0.00 0.00 3.36
3137 3178 0.249868 CAAACACCTGCCGAGTCTCA 60.250 55.000 0.00 0.00 0.00 3.27
3138 3179 0.687354 AAACACCTGCCGAGTCTCAT 59.313 50.000 0.00 0.00 0.00 2.90
3139 3180 0.036952 AACACCTGCCGAGTCTCATG 60.037 55.000 0.00 0.00 0.00 3.07
3140 3181 0.900182 ACACCTGCCGAGTCTCATGA 60.900 55.000 0.00 0.00 0.00 3.07
3141 3182 0.179116 CACCTGCCGAGTCTCATGAG 60.179 60.000 17.07 17.07 0.00 2.90
3142 3183 0.323816 ACCTGCCGAGTCTCATGAGA 60.324 55.000 21.67 21.67 34.56 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
223 224 5.368989 GTTTCCTATTCTGGAACATCCGAT 58.631 41.667 0.00 0.00 44.83 4.18
571 573 2.479656 CCCCGTTTTACGATTTTCGACA 59.520 45.455 3.62 0.00 46.05 4.35
645 647 0.768221 AACCTCCCTGCTCTCCAACA 60.768 55.000 0.00 0.00 0.00 3.33
708 710 6.359480 TGTTCTTCTTTCCGAGAAAACTTC 57.641 37.500 0.00 0.00 43.56 3.01
709 711 6.753107 TTGTTCTTCTTTCCGAGAAAACTT 57.247 33.333 0.00 0.00 43.56 2.66
724 726 4.984161 CCATGTCCATGTGTTTTGTTCTTC 59.016 41.667 6.53 0.00 37.11 2.87
727 729 4.050553 CACCATGTCCATGTGTTTTGTTC 58.949 43.478 6.53 0.00 37.11 3.18
729 731 3.295093 TCACCATGTCCATGTGTTTTGT 58.705 40.909 6.53 0.00 37.11 2.83
730 732 4.050553 GTTCACCATGTCCATGTGTTTTG 58.949 43.478 6.53 0.00 37.11 2.44
731 733 3.069443 GGTTCACCATGTCCATGTGTTTT 59.931 43.478 6.53 0.00 37.11 2.43
732 734 2.627699 GGTTCACCATGTCCATGTGTTT 59.372 45.455 6.53 0.00 37.11 2.83
733 735 2.238521 GGTTCACCATGTCCATGTGTT 58.761 47.619 6.53 0.00 37.11 3.32
777 779 0.459899 CTGGTGCATGGACGCTACTA 59.540 55.000 11.52 0.00 0.00 1.82
812 814 0.321919 GTGGAGAGCATGAACTGGCA 60.322 55.000 0.00 0.00 0.00 4.92
817 819 2.480416 CCTCGTAGTGGAGAGCATGAAC 60.480 54.545 0.00 0.00 45.27 3.18
837 839 0.168128 GTTGTGCGTGCTTGGTATCC 59.832 55.000 0.00 0.00 0.00 2.59
854 856 8.706322 AATCAACTAGTATTTGACTTTGGGTT 57.294 30.769 5.18 0.00 39.81 4.11
1087 1094 4.379243 CGACACCGGGCTCTTGCT 62.379 66.667 6.32 0.00 39.59 3.91
1355 1362 4.722700 GCAGGGCCATGACCGTGT 62.723 66.667 24.18 0.00 45.37 4.49
1750 1763 3.838795 GTCCATGTCGACGTGCGC 61.839 66.667 28.61 19.56 40.61 6.09
2025 2038 4.736896 GCGGCCGTCGAGAACCTT 62.737 66.667 28.70 0.00 42.43 3.50
2170 2183 5.290643 CACGAAGCAAATCCAAGAAACAAAA 59.709 36.000 0.00 0.00 0.00 2.44
2174 2187 2.726241 GCACGAAGCAAATCCAAGAAAC 59.274 45.455 0.00 0.00 44.79 2.78
2249 2265 0.815734 TGGAAAACGCCGGAAAAACA 59.184 45.000 5.05 0.00 0.00 2.83
2251 2267 1.104630 ACTGGAAAACGCCGGAAAAA 58.895 45.000 5.05 0.00 37.74 1.94
2263 2279 5.309638 TGGACAATCGAACATAACTGGAAA 58.690 37.500 0.00 0.00 0.00 3.13
2267 2283 7.226523 TGGAATATGGACAATCGAACATAACTG 59.773 37.037 0.00 0.00 30.51 3.16
2269 2285 7.490962 TGGAATATGGACAATCGAACATAAC 57.509 36.000 0.00 0.00 30.51 1.89
2272 2288 4.516698 GCTGGAATATGGACAATCGAACAT 59.483 41.667 0.00 0.00 0.00 2.71
2295 2312 0.246635 AGTCGTCTGGAATTGGTCGG 59.753 55.000 0.00 0.00 0.00 4.79
2307 2324 4.895668 TGTTAAAACCCCATAGTCGTCT 57.104 40.909 0.00 0.00 0.00 4.18
2315 2332 4.644685 CCTCGATTCATGTTAAAACCCCAT 59.355 41.667 0.00 0.00 0.00 4.00
2326 2343 2.100584 GCTCTGTCTCCTCGATTCATGT 59.899 50.000 0.00 0.00 0.00 3.21
2327 2344 2.361757 AGCTCTGTCTCCTCGATTCATG 59.638 50.000 0.00 0.00 0.00 3.07
2331 2348 1.476085 CACAGCTCTGTCTCCTCGATT 59.524 52.381 0.00 0.00 42.83 3.34
2334 2351 0.600557 AACACAGCTCTGTCTCCTCG 59.399 55.000 0.00 0.00 42.83 4.63
2346 2363 3.618690 AATGAGGGAGTAGAACACAGC 57.381 47.619 0.00 0.00 0.00 4.40
2347 2364 4.508662 GGAAATGAGGGAGTAGAACACAG 58.491 47.826 0.00 0.00 0.00 3.66
2355 2372 6.183361 CCTTATAAACCGGAAATGAGGGAGTA 60.183 42.308 9.46 0.00 0.00 2.59
2356 2373 5.397559 CCTTATAAACCGGAAATGAGGGAGT 60.398 44.000 9.46 0.00 0.00 3.85
2357 2374 5.063880 CCTTATAAACCGGAAATGAGGGAG 58.936 45.833 9.46 0.00 0.00 4.30
2358 2375 4.687769 GCCTTATAAACCGGAAATGAGGGA 60.688 45.833 9.46 0.00 29.41 4.20
2359 2376 3.568430 GCCTTATAAACCGGAAATGAGGG 59.432 47.826 9.46 3.77 29.41 4.30
2360 2377 4.461198 AGCCTTATAAACCGGAAATGAGG 58.539 43.478 9.46 14.38 31.33 3.86
2361 2378 5.123227 TGAGCCTTATAAACCGGAAATGAG 58.877 41.667 9.46 4.37 0.00 2.90
2362 2379 5.105567 TGAGCCTTATAAACCGGAAATGA 57.894 39.130 9.46 0.00 0.00 2.57
2363 2380 5.828299 TTGAGCCTTATAAACCGGAAATG 57.172 39.130 9.46 0.00 0.00 2.32
2364 2381 6.605594 TGAATTGAGCCTTATAAACCGGAAAT 59.394 34.615 9.46 0.08 0.00 2.17
2365 2382 5.946972 TGAATTGAGCCTTATAAACCGGAAA 59.053 36.000 9.46 0.00 0.00 3.13
2366 2383 5.502079 TGAATTGAGCCTTATAAACCGGAA 58.498 37.500 9.46 0.00 0.00 4.30
2367 2384 5.105567 TGAATTGAGCCTTATAAACCGGA 57.894 39.130 9.46 0.00 0.00 5.14
2368 2385 5.828299 TTGAATTGAGCCTTATAAACCGG 57.172 39.130 0.00 0.00 0.00 5.28
2369 2386 8.702163 ATTTTTGAATTGAGCCTTATAAACCG 57.298 30.769 0.00 0.00 0.00 4.44
2370 2387 9.875691 AGATTTTTGAATTGAGCCTTATAAACC 57.124 29.630 0.00 0.00 0.00 3.27
2375 2392 8.974238 TGATGAGATTTTTGAATTGAGCCTTAT 58.026 29.630 0.00 0.00 0.00 1.73
2376 2393 8.352137 TGATGAGATTTTTGAATTGAGCCTTA 57.648 30.769 0.00 0.00 0.00 2.69
2377 2394 7.235935 TGATGAGATTTTTGAATTGAGCCTT 57.764 32.000 0.00 0.00 0.00 4.35
2378 2395 6.845758 TGATGAGATTTTTGAATTGAGCCT 57.154 33.333 0.00 0.00 0.00 4.58
2379 2396 6.312180 GGTTGATGAGATTTTTGAATTGAGCC 59.688 38.462 0.00 0.00 0.00 4.70
2380 2397 6.869913 TGGTTGATGAGATTTTTGAATTGAGC 59.130 34.615 0.00 0.00 0.00 4.26
2381 2398 8.821147 TTGGTTGATGAGATTTTTGAATTGAG 57.179 30.769 0.00 0.00 0.00 3.02
2382 2399 7.874016 CCTTGGTTGATGAGATTTTTGAATTGA 59.126 33.333 0.00 0.00 0.00 2.57
2383 2400 7.658575 ACCTTGGTTGATGAGATTTTTGAATTG 59.341 33.333 0.00 0.00 0.00 2.32
2384 2401 7.738847 ACCTTGGTTGATGAGATTTTTGAATT 58.261 30.769 0.00 0.00 0.00 2.17
2385 2402 7.307131 ACCTTGGTTGATGAGATTTTTGAAT 57.693 32.000 0.00 0.00 0.00 2.57
2386 2403 6.729690 ACCTTGGTTGATGAGATTTTTGAA 57.270 33.333 0.00 0.00 0.00 2.69
2387 2404 7.230747 TCTACCTTGGTTGATGAGATTTTTGA 58.769 34.615 0.00 0.00 0.00 2.69
2388 2405 7.452880 TCTACCTTGGTTGATGAGATTTTTG 57.547 36.000 0.00 0.00 0.00 2.44
2389 2406 7.123247 CCATCTACCTTGGTTGATGAGATTTTT 59.877 37.037 31.04 4.70 38.31 1.94
2390 2407 6.604795 CCATCTACCTTGGTTGATGAGATTTT 59.395 38.462 31.04 5.27 38.31 1.82
2391 2408 6.125029 CCATCTACCTTGGTTGATGAGATTT 58.875 40.000 31.04 5.86 38.31 2.17
2392 2409 5.192522 ACCATCTACCTTGGTTGATGAGATT 59.807 40.000 31.04 17.08 45.19 2.40
2393 2410 4.723789 ACCATCTACCTTGGTTGATGAGAT 59.276 41.667 31.04 19.53 45.19 2.75
2394 2411 4.080919 CACCATCTACCTTGGTTGATGAGA 60.081 45.833 31.04 15.57 45.19 3.27
2395 2412 4.080919 TCACCATCTACCTTGGTTGATGAG 60.081 45.833 31.04 24.84 45.19 2.90
2396 2413 3.843619 TCACCATCTACCTTGGTTGATGA 59.156 43.478 31.04 18.12 45.19 2.92
2397 2414 4.194640 CTCACCATCTACCTTGGTTGATG 58.805 47.826 26.11 26.11 45.19 3.07
2398 2415 3.846588 ACTCACCATCTACCTTGGTTGAT 59.153 43.478 10.18 10.18 45.19 2.57
2399 2416 3.007940 CACTCACCATCTACCTTGGTTGA 59.992 47.826 6.42 6.42 45.19 3.18
2400 2417 3.338249 CACTCACCATCTACCTTGGTTG 58.662 50.000 0.00 0.00 45.19 3.77
2401 2418 2.305927 CCACTCACCATCTACCTTGGTT 59.694 50.000 0.00 0.00 45.19 3.67
2403 2420 1.909302 ACCACTCACCATCTACCTTGG 59.091 52.381 0.00 0.00 40.26 3.61
2404 2421 2.567169 TCACCACTCACCATCTACCTTG 59.433 50.000 0.00 0.00 0.00 3.61
2405 2422 2.902608 TCACCACTCACCATCTACCTT 58.097 47.619 0.00 0.00 0.00 3.50
2406 2423 2.623418 TCACCACTCACCATCTACCT 57.377 50.000 0.00 0.00 0.00 3.08
2407 2424 3.695830 TTTCACCACTCACCATCTACC 57.304 47.619 0.00 0.00 0.00 3.18
2422 2439 5.596845 TGCAAACTCCAAAAGGTATTTCAC 58.403 37.500 0.00 0.00 0.00 3.18
2423 2440 5.860941 TGCAAACTCCAAAAGGTATTTCA 57.139 34.783 0.00 0.00 0.00 2.69
2424 2441 7.546778 TTTTGCAAACTCCAAAAGGTATTTC 57.453 32.000 12.39 0.00 37.28 2.17
2441 2458 8.838365 AAATCATTAATTTGAGTGCTTTTGCAA 58.162 25.926 0.00 0.00 45.62 4.08
2442 2459 8.380743 AAATCATTAATTTGAGTGCTTTTGCA 57.619 26.923 0.00 0.00 43.72 4.08
2443 2460 9.109533 CAAAATCATTAATTTGAGTGCTTTTGC 57.890 29.630 0.00 0.00 40.72 3.68
2523 2540 9.941325 AGAAAATTGACCAATGCATGTAATTTA 57.059 25.926 0.00 0.00 31.07 1.40
2524 2541 8.851541 AGAAAATTGACCAATGCATGTAATTT 57.148 26.923 0.00 6.84 31.84 1.82
2525 2542 8.316214 AGAGAAAATTGACCAATGCATGTAATT 58.684 29.630 0.00 0.83 0.00 1.40
2526 2543 7.844009 AGAGAAAATTGACCAATGCATGTAAT 58.156 30.769 0.00 0.00 0.00 1.89
2527 2544 7.230849 AGAGAAAATTGACCAATGCATGTAA 57.769 32.000 0.00 0.00 0.00 2.41
2528 2545 6.839124 AGAGAAAATTGACCAATGCATGTA 57.161 33.333 0.00 0.00 0.00 2.29
2529 2546 5.733620 AGAGAAAATTGACCAATGCATGT 57.266 34.783 0.00 0.00 0.00 3.21
2530 2547 8.712285 ATTAAGAGAAAATTGACCAATGCATG 57.288 30.769 0.00 0.00 0.00 4.06
2531 2548 9.807649 GTATTAAGAGAAAATTGACCAATGCAT 57.192 29.630 0.00 0.00 0.00 3.96
2532 2549 9.023962 AGTATTAAGAGAAAATTGACCAATGCA 57.976 29.630 0.00 0.00 0.00 3.96
2533 2550 9.860898 AAGTATTAAGAGAAAATTGACCAATGC 57.139 29.630 0.00 0.00 0.00 3.56
2535 2552 9.860898 GCAAGTATTAAGAGAAAATTGACCAAT 57.139 29.630 0.00 0.00 0.00 3.16
2536 2553 8.855110 TGCAAGTATTAAGAGAAAATTGACCAA 58.145 29.630 0.00 0.00 0.00 3.67
2537 2554 8.402798 TGCAAGTATTAAGAGAAAATTGACCA 57.597 30.769 0.00 0.00 0.00 4.02
2538 2555 9.860898 AATGCAAGTATTAAGAGAAAATTGACC 57.139 29.630 0.00 0.00 0.00 4.02
2561 2578 7.042950 TCCAAGGTGCATTAAATCATTGAATG 58.957 34.615 3.23 3.23 34.37 2.67
2562 2579 7.185318 TCCAAGGTGCATTAAATCATTGAAT 57.815 32.000 0.00 0.00 0.00 2.57
2563 2580 6.602410 TCCAAGGTGCATTAAATCATTGAA 57.398 33.333 0.00 0.00 0.00 2.69
2564 2581 6.602410 TTCCAAGGTGCATTAAATCATTGA 57.398 33.333 0.00 0.00 0.00 2.57
2565 2582 7.223971 CAGATTCCAAGGTGCATTAAATCATTG 59.776 37.037 0.00 0.00 0.00 2.82
2566 2583 7.124599 TCAGATTCCAAGGTGCATTAAATCATT 59.875 33.333 0.00 0.00 0.00 2.57
2567 2584 6.608405 TCAGATTCCAAGGTGCATTAAATCAT 59.392 34.615 0.00 0.00 0.00 2.45
2568 2585 5.951148 TCAGATTCCAAGGTGCATTAAATCA 59.049 36.000 0.00 0.00 0.00 2.57
2569 2586 6.455360 TCAGATTCCAAGGTGCATTAAATC 57.545 37.500 0.00 0.00 0.00 2.17
2570 2587 6.211184 TGTTCAGATTCCAAGGTGCATTAAAT 59.789 34.615 0.00 0.00 0.00 1.40
2571 2588 5.538053 TGTTCAGATTCCAAGGTGCATTAAA 59.462 36.000 0.00 0.00 0.00 1.52
2572 2589 5.076182 TGTTCAGATTCCAAGGTGCATTAA 58.924 37.500 0.00 0.00 0.00 1.40
2573 2590 4.661222 TGTTCAGATTCCAAGGTGCATTA 58.339 39.130 0.00 0.00 0.00 1.90
2574 2591 3.499338 TGTTCAGATTCCAAGGTGCATT 58.501 40.909 0.00 0.00 0.00 3.56
2575 2592 3.159213 TGTTCAGATTCCAAGGTGCAT 57.841 42.857 0.00 0.00 0.00 3.96
2576 2593 2.655090 TGTTCAGATTCCAAGGTGCA 57.345 45.000 0.00 0.00 0.00 4.57
2577 2594 2.821969 ACATGTTCAGATTCCAAGGTGC 59.178 45.455 0.00 0.00 0.00 5.01
2578 2595 4.074259 TCACATGTTCAGATTCCAAGGTG 58.926 43.478 0.00 0.00 0.00 4.00
2579 2596 4.371624 TCACATGTTCAGATTCCAAGGT 57.628 40.909 0.00 0.00 0.00 3.50
2580 2597 4.097437 CCATCACATGTTCAGATTCCAAGG 59.903 45.833 0.00 0.00 0.00 3.61
2581 2598 4.097437 CCCATCACATGTTCAGATTCCAAG 59.903 45.833 0.00 0.00 0.00 3.61
2582 2599 4.018490 CCCATCACATGTTCAGATTCCAA 58.982 43.478 0.00 0.00 0.00 3.53
2583 2600 3.266513 TCCCATCACATGTTCAGATTCCA 59.733 43.478 0.00 0.00 0.00 3.53
2584 2601 3.889815 TCCCATCACATGTTCAGATTCC 58.110 45.455 0.00 0.00 0.00 3.01
2585 2602 5.183713 TGTTTCCCATCACATGTTCAGATTC 59.816 40.000 0.00 0.00 0.00 2.52
2586 2603 5.078949 TGTTTCCCATCACATGTTCAGATT 58.921 37.500 0.00 0.00 0.00 2.40
2587 2604 4.665451 TGTTTCCCATCACATGTTCAGAT 58.335 39.130 0.00 0.00 0.00 2.90
2588 2605 4.097551 TGTTTCCCATCACATGTTCAGA 57.902 40.909 0.00 0.00 0.00 3.27
2589 2606 4.549458 GTTGTTTCCCATCACATGTTCAG 58.451 43.478 0.00 0.00 0.00 3.02
2590 2607 3.320541 GGTTGTTTCCCATCACATGTTCA 59.679 43.478 0.00 0.00 0.00 3.18
2591 2608 3.320541 TGGTTGTTTCCCATCACATGTTC 59.679 43.478 0.00 0.00 0.00 3.18
2592 2609 3.303938 TGGTTGTTTCCCATCACATGTT 58.696 40.909 0.00 0.00 0.00 2.71
2593 2610 2.956132 TGGTTGTTTCCCATCACATGT 58.044 42.857 0.00 0.00 0.00 3.21
2594 2611 4.333913 TTTGGTTGTTTCCCATCACATG 57.666 40.909 0.00 0.00 0.00 3.21
2595 2612 5.565455 AATTTGGTTGTTTCCCATCACAT 57.435 34.783 0.00 0.00 0.00 3.21
2596 2613 6.485830 TTAATTTGGTTGTTTCCCATCACA 57.514 33.333 0.00 0.00 0.00 3.58
2597 2614 5.408299 GCTTAATTTGGTTGTTTCCCATCAC 59.592 40.000 0.00 0.00 0.00 3.06
2598 2615 5.512232 GGCTTAATTTGGTTGTTTCCCATCA 60.512 40.000 0.00 0.00 0.00 3.07
2599 2616 4.935205 GGCTTAATTTGGTTGTTTCCCATC 59.065 41.667 0.00 0.00 0.00 3.51
2600 2617 4.597075 AGGCTTAATTTGGTTGTTTCCCAT 59.403 37.500 0.00 0.00 0.00 4.00
2601 2618 3.970640 AGGCTTAATTTGGTTGTTTCCCA 59.029 39.130 0.00 0.00 0.00 4.37
2602 2619 4.617253 AGGCTTAATTTGGTTGTTTCCC 57.383 40.909 0.00 0.00 0.00 3.97
2603 2620 9.713713 TTTATAAGGCTTAATTTGGTTGTTTCC 57.286 29.630 11.59 0.00 0.00 3.13
2607 2624 9.665719 CCATTTTATAAGGCTTAATTTGGTTGT 57.334 29.630 11.59 0.00 0.00 3.32
2608 2625 9.883142 TCCATTTTATAAGGCTTAATTTGGTTG 57.117 29.630 11.59 4.00 0.00 3.77
2642 2659 9.594478 CGGTTTATAGGGCTTATTTCAAAATTT 57.406 29.630 0.00 0.00 0.00 1.82
2643 2660 8.201464 CCGGTTTATAGGGCTTATTTCAAAATT 58.799 33.333 0.00 0.00 0.00 1.82
2644 2661 7.562088 TCCGGTTTATAGGGCTTATTTCAAAAT 59.438 33.333 0.00 0.00 0.00 1.82
2645 2662 6.890814 TCCGGTTTATAGGGCTTATTTCAAAA 59.109 34.615 0.00 0.00 0.00 2.44
2646 2663 6.424883 TCCGGTTTATAGGGCTTATTTCAAA 58.575 36.000 0.00 0.00 0.00 2.69
2647 2664 6.003859 TCCGGTTTATAGGGCTTATTTCAA 57.996 37.500 0.00 0.00 0.00 2.69
2648 2665 5.633655 TCCGGTTTATAGGGCTTATTTCA 57.366 39.130 0.00 0.00 0.00 2.69
2649 2666 6.016527 CCTTTCCGGTTTATAGGGCTTATTTC 60.017 42.308 0.00 0.00 0.00 2.17
2650 2667 5.831525 CCTTTCCGGTTTATAGGGCTTATTT 59.168 40.000 0.00 0.00 0.00 1.40
2651 2668 5.133153 TCCTTTCCGGTTTATAGGGCTTATT 59.867 40.000 0.00 0.00 0.00 1.40
2652 2669 4.661709 TCCTTTCCGGTTTATAGGGCTTAT 59.338 41.667 0.00 0.00 0.00 1.73
2653 2670 4.039339 TCCTTTCCGGTTTATAGGGCTTA 58.961 43.478 0.00 0.00 0.00 3.09
2654 2671 2.848071 TCCTTTCCGGTTTATAGGGCTT 59.152 45.455 0.00 0.00 0.00 4.35
2655 2672 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
2656 2673 2.486727 CCTCCTTTCCGGTTTATAGGGC 60.487 54.545 0.00 0.00 0.00 5.19
2657 2674 2.105993 CCCTCCTTTCCGGTTTATAGGG 59.894 54.545 16.03 16.03 36.05 3.53
2658 2675 3.043418 TCCCTCCTTTCCGGTTTATAGG 58.957 50.000 0.00 4.62 0.00 2.57
2659 2676 3.710165 ACTCCCTCCTTTCCGGTTTATAG 59.290 47.826 0.00 0.00 0.00 1.31
2660 2677 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
2661 2678 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
2662 2679 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
2663 2680 1.627329 GTACTCCCTCCTTTCCGGTTT 59.373 52.381 0.00 0.00 0.00 3.27
2664 2681 1.273759 GTACTCCCTCCTTTCCGGTT 58.726 55.000 0.00 0.00 0.00 4.44
2665 2682 0.115745 TGTACTCCCTCCTTTCCGGT 59.884 55.000 0.00 0.00 0.00 5.28
2666 2683 0.824759 CTGTACTCCCTCCTTTCCGG 59.175 60.000 0.00 0.00 0.00 5.14
2667 2684 1.558233 ACTGTACTCCCTCCTTTCCG 58.442 55.000 0.00 0.00 0.00 4.30
2668 2685 2.638363 ACAACTGTACTCCCTCCTTTCC 59.362 50.000 0.00 0.00 0.00 3.13
2669 2686 4.818642 GTACAACTGTACTCCCTCCTTTC 58.181 47.826 11.89 0.00 45.47 2.62
2670 2687 4.886496 GTACAACTGTACTCCCTCCTTT 57.114 45.455 11.89 0.00 45.47 3.11
2681 2698 6.262193 TGACAAGATCGATGTACAACTGTA 57.738 37.500 0.54 0.00 0.00 2.74
2682 2699 5.134202 TGACAAGATCGATGTACAACTGT 57.866 39.130 0.54 0.00 0.00 3.55
2683 2700 5.501413 GCATGACAAGATCGATGTACAACTG 60.501 44.000 0.54 0.00 0.00 3.16
2684 2701 4.568359 GCATGACAAGATCGATGTACAACT 59.432 41.667 0.54 0.00 0.00 3.16
2685 2702 4.260375 GGCATGACAAGATCGATGTACAAC 60.260 45.833 0.54 0.00 0.00 3.32
2686 2703 3.871006 GGCATGACAAGATCGATGTACAA 59.129 43.478 0.54 0.00 0.00 2.41
2687 2704 3.457234 GGCATGACAAGATCGATGTACA 58.543 45.455 0.54 0.00 0.00 2.90
2688 2705 2.472861 CGGCATGACAAGATCGATGTAC 59.527 50.000 0.54 0.00 0.00 2.90
2689 2706 2.100749 ACGGCATGACAAGATCGATGTA 59.899 45.455 0.54 0.00 0.00 2.29
2731 2748 3.004734 CGGGGAGCCATTTAATCACATTC 59.995 47.826 0.00 0.00 0.00 2.67
2734 2772 2.021723 GCGGGGAGCCATTTAATCACA 61.022 52.381 0.00 0.00 40.81 3.58
2860 2900 5.743302 TCGTTATCGCTAGGTGGTCTACAC 61.743 50.000 0.00 0.00 42.09 2.90
2867 2907 3.243336 GCTTATCGTTATCGCTAGGTGG 58.757 50.000 0.00 0.00 36.96 4.61
2870 2910 3.914966 CAGTGCTTATCGTTATCGCTAGG 59.085 47.826 0.00 0.00 36.96 3.02
2878 2918 1.746787 TCGCTCCAGTGCTTATCGTTA 59.253 47.619 0.00 0.00 0.00 3.18
2879 2919 0.530744 TCGCTCCAGTGCTTATCGTT 59.469 50.000 0.00 0.00 0.00 3.85
2882 2922 0.878086 GGCTCGCTCCAGTGCTTATC 60.878 60.000 0.00 0.00 0.00 1.75
2884 2924 2.579201 GGCTCGCTCCAGTGCTTA 59.421 61.111 0.00 0.00 0.00 3.09
2891 2931 2.351244 ACATCTTCGGCTCGCTCCA 61.351 57.895 0.00 0.00 0.00 3.86
2892 2932 1.880340 CACATCTTCGGCTCGCTCC 60.880 63.158 0.00 0.00 0.00 4.70
2893 2933 2.520904 GCACATCTTCGGCTCGCTC 61.521 63.158 0.00 0.00 0.00 5.03
2901 2941 0.740868 ATGACGGTGGCACATCTTCG 60.741 55.000 20.82 15.29 40.91 3.79
2902 2942 1.009829 GATGACGGTGGCACATCTTC 58.990 55.000 20.82 17.90 44.52 2.87
2905 2945 1.421410 GACGATGACGGTGGCACATC 61.421 60.000 20.82 16.24 44.46 3.06
2906 2946 1.447838 GACGATGACGGTGGCACAT 60.448 57.895 20.82 6.66 44.46 3.21
2907 2947 2.048597 GACGATGACGGTGGCACA 60.049 61.111 20.82 0.00 44.46 4.57
2908 2948 2.781595 AAGGACGATGACGGTGGCAC 62.782 60.000 9.70 9.70 44.46 5.01
2909 2949 2.501223 GAAGGACGATGACGGTGGCA 62.501 60.000 0.00 0.00 44.46 4.92
2911 2951 1.153628 GGAAGGACGATGACGGTGG 60.154 63.158 0.00 0.00 44.46 4.61
2912 2952 1.153628 GGGAAGGACGATGACGGTG 60.154 63.158 0.00 0.00 44.46 4.94
2913 2953 1.305046 AGGGAAGGACGATGACGGT 60.305 57.895 0.00 0.00 44.46 4.83
2915 2955 0.101399 CTGAGGGAAGGACGATGACG 59.899 60.000 0.00 0.00 45.75 4.35
2916 2956 0.179097 GCTGAGGGAAGGACGATGAC 60.179 60.000 0.00 0.00 0.00 3.06
2923 2963 1.984570 CACTCCGCTGAGGGAAGGA 60.985 63.158 10.11 0.00 45.48 3.36
2933 2973 0.759346 AAGGTTTGTCTCACTCCGCT 59.241 50.000 0.00 0.00 0.00 5.52
2934 2974 0.868406 CAAGGTTTGTCTCACTCCGC 59.132 55.000 0.00 0.00 0.00 5.54
2935 2975 2.240493 ACAAGGTTTGTCTCACTCCG 57.760 50.000 0.00 0.00 40.56 4.63
2958 2998 7.028361 GCACAACGACTTCTAAACTATCTACT 58.972 38.462 0.00 0.00 0.00 2.57
2961 3001 6.026947 AGCACAACGACTTCTAAACTATCT 57.973 37.500 0.00 0.00 0.00 1.98
2964 3004 7.205297 ACTTTAGCACAACGACTTCTAAACTA 58.795 34.615 0.00 0.00 0.00 2.24
2966 3006 6.283161 ACTTTAGCACAACGACTTCTAAAC 57.717 37.500 0.00 0.00 0.00 2.01
2968 3008 5.464389 GGAACTTTAGCACAACGACTTCTAA 59.536 40.000 0.00 0.00 0.00 2.10
2969 3009 4.986659 GGAACTTTAGCACAACGACTTCTA 59.013 41.667 0.00 0.00 0.00 2.10
2994 3034 8.618677 CGGTGTTATTCTAGTGTGATAGTTCTA 58.381 37.037 0.00 0.00 0.00 2.10
2997 3037 6.040878 GCGGTGTTATTCTAGTGTGATAGTT 58.959 40.000 0.00 0.00 0.00 2.24
2999 3039 4.982916 GGCGGTGTTATTCTAGTGTGATAG 59.017 45.833 0.00 0.00 0.00 2.08
3000 3040 4.403113 TGGCGGTGTTATTCTAGTGTGATA 59.597 41.667 0.00 0.00 0.00 2.15
3002 3042 2.563620 TGGCGGTGTTATTCTAGTGTGA 59.436 45.455 0.00 0.00 0.00 3.58
3003 3043 2.671396 GTGGCGGTGTTATTCTAGTGTG 59.329 50.000 0.00 0.00 0.00 3.82
3007 3047 1.567504 CGGTGGCGGTGTTATTCTAG 58.432 55.000 0.00 0.00 0.00 2.43
3008 3048 0.460635 GCGGTGGCGGTGTTATTCTA 60.461 55.000 0.00 0.00 0.00 2.10
3009 3049 1.743995 GCGGTGGCGGTGTTATTCT 60.744 57.895 0.00 0.00 0.00 2.40
3011 3051 2.748647 GGCGGTGGCGGTGTTATT 60.749 61.111 0.00 0.00 41.24 1.40
3020 3060 0.461339 TTCTCTTTATCGGCGGTGGC 60.461 55.000 7.21 0.00 38.90 5.01
3021 3061 1.287425 GTTCTCTTTATCGGCGGTGG 58.713 55.000 7.21 0.00 0.00 4.61
3023 3063 2.981859 ATGTTCTCTTTATCGGCGGT 57.018 45.000 7.21 0.65 0.00 5.68
3025 3065 7.306213 TCTAATCTATGTTCTCTTTATCGGCG 58.694 38.462 0.00 0.00 0.00 6.46
3032 3072 9.218525 TGGATCCTTCTAATCTATGTTCTCTTT 57.781 33.333 14.23 0.00 0.00 2.52
3037 3077 7.740805 AGGTTGGATCCTTCTAATCTATGTTC 58.259 38.462 14.23 0.00 32.50 3.18
3042 3082 9.756571 GTCTATAGGTTGGATCCTTCTAATCTA 57.243 37.037 14.23 9.02 39.49 1.98
3043 3083 8.235230 TGTCTATAGGTTGGATCCTTCTAATCT 58.765 37.037 14.23 6.93 37.52 2.40
3044 3084 8.308207 GTGTCTATAGGTTGGATCCTTCTAATC 58.692 40.741 14.23 0.00 38.86 1.75
3045 3085 7.789831 TGTGTCTATAGGTTGGATCCTTCTAAT 59.210 37.037 14.23 4.17 38.86 1.73
3046 3086 7.130099 TGTGTCTATAGGTTGGATCCTTCTAA 58.870 38.462 14.23 0.00 38.86 2.10
3048 3088 5.529289 TGTGTCTATAGGTTGGATCCTTCT 58.471 41.667 14.23 9.96 38.86 2.85
3053 3093 5.692204 CGTTCATGTGTCTATAGGTTGGATC 59.308 44.000 0.00 0.00 0.00 3.36
3054 3094 5.601662 CGTTCATGTGTCTATAGGTTGGAT 58.398 41.667 0.00 0.00 0.00 3.41
3062 3103 4.487019 TCGTTTGCGTTCATGTGTCTATA 58.513 39.130 0.00 0.00 39.49 1.31
3063 3104 3.322369 TCGTTTGCGTTCATGTGTCTAT 58.678 40.909 0.00 0.00 39.49 1.98
3072 3113 2.476519 GGTCTTTGTTCGTTTGCGTTCA 60.477 45.455 0.00 0.00 39.49 3.18
3073 3114 2.106418 GGTCTTTGTTCGTTTGCGTTC 58.894 47.619 0.00 0.00 39.49 3.95
3077 3118 0.658897 TCCGGTCTTTGTTCGTTTGC 59.341 50.000 0.00 0.00 0.00 3.68
3080 3121 1.071071 TGGATCCGGTCTTTGTTCGTT 59.929 47.619 7.39 0.00 0.00 3.85
3082 3123 1.076332 GTGGATCCGGTCTTTGTTCG 58.924 55.000 7.39 0.00 0.00 3.95
3095 3136 0.107703 TTGGTGGATCTGCGTGGATC 60.108 55.000 10.01 10.01 40.78 3.36
3096 3137 0.327924 TTTGGTGGATCTGCGTGGAT 59.672 50.000 0.00 0.00 0.00 3.41
3097 3138 0.327924 ATTTGGTGGATCTGCGTGGA 59.672 50.000 0.00 0.00 0.00 4.02
3098 3139 1.670811 GTATTTGGTGGATCTGCGTGG 59.329 52.381 0.00 0.00 0.00 4.94
3099 3140 2.355197 TGTATTTGGTGGATCTGCGTG 58.645 47.619 0.00 0.00 0.00 5.34
3100 3141 2.779755 TGTATTTGGTGGATCTGCGT 57.220 45.000 0.00 0.00 0.00 5.24
3101 3142 3.190327 TGTTTGTATTTGGTGGATCTGCG 59.810 43.478 0.00 0.00 0.00 5.18
3102 3143 4.485163 GTGTTTGTATTTGGTGGATCTGC 58.515 43.478 0.00 0.00 0.00 4.26
3103 3144 4.766891 AGGTGTTTGTATTTGGTGGATCTG 59.233 41.667 0.00 0.00 0.00 2.90
3104 3145 4.766891 CAGGTGTTTGTATTTGGTGGATCT 59.233 41.667 0.00 0.00 0.00 2.75
3105 3146 4.618227 GCAGGTGTTTGTATTTGGTGGATC 60.618 45.833 0.00 0.00 0.00 3.36
3106 3147 3.258123 GCAGGTGTTTGTATTTGGTGGAT 59.742 43.478 0.00 0.00 0.00 3.41
3107 3148 2.625790 GCAGGTGTTTGTATTTGGTGGA 59.374 45.455 0.00 0.00 0.00 4.02
3108 3149 2.288763 GGCAGGTGTTTGTATTTGGTGG 60.289 50.000 0.00 0.00 0.00 4.61
3109 3150 2.606795 CGGCAGGTGTTTGTATTTGGTG 60.607 50.000 0.00 0.00 0.00 4.17
3110 3151 1.611491 CGGCAGGTGTTTGTATTTGGT 59.389 47.619 0.00 0.00 0.00 3.67
3111 3152 1.883275 TCGGCAGGTGTTTGTATTTGG 59.117 47.619 0.00 0.00 0.00 3.28
3112 3153 2.552315 ACTCGGCAGGTGTTTGTATTTG 59.448 45.455 0.00 0.00 0.00 2.32
3113 3154 2.812011 GACTCGGCAGGTGTTTGTATTT 59.188 45.455 0.00 0.00 0.00 1.40
3114 3155 2.038557 AGACTCGGCAGGTGTTTGTATT 59.961 45.455 0.00 0.00 0.00 1.89
3115 3156 1.623811 AGACTCGGCAGGTGTTTGTAT 59.376 47.619 0.00 0.00 0.00 2.29
3116 3157 1.000506 GAGACTCGGCAGGTGTTTGTA 59.999 52.381 0.00 0.00 0.00 2.41
3117 3158 0.249911 GAGACTCGGCAGGTGTTTGT 60.250 55.000 0.00 0.00 0.00 2.83
3118 3159 0.249868 TGAGACTCGGCAGGTGTTTG 60.250 55.000 0.00 0.00 0.00 2.93
3119 3160 0.687354 ATGAGACTCGGCAGGTGTTT 59.313 50.000 0.00 0.00 0.00 2.83
3120 3161 0.036952 CATGAGACTCGGCAGGTGTT 60.037 55.000 0.00 0.00 0.00 3.32
3121 3162 0.900182 TCATGAGACTCGGCAGGTGT 60.900 55.000 0.00 0.00 0.00 4.16
3122 3163 0.179116 CTCATGAGACTCGGCAGGTG 60.179 60.000 18.34 0.00 0.00 4.00
3123 3164 0.323816 TCTCATGAGACTCGGCAGGT 60.324 55.000 21.67 0.00 31.41 4.00
3124 3165 2.498077 TCTCATGAGACTCGGCAGG 58.502 57.895 21.67 0.00 31.41 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.