Multiple sequence alignment - TraesCS7B01G263200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G263200 chr7B 100.000 3695 0 0 1 3695 483868706 483865012 0.000000e+00 6824.0
1 TraesCS7B01G263200 chr7B 94.691 810 36 5 1 805 639856835 639857642 0.000000e+00 1251.0
2 TraesCS7B01G263200 chr7B 85.665 1151 128 21 891 2025 483891119 483889990 0.000000e+00 1177.0
3 TraesCS7B01G263200 chr7B 79.325 711 109 27 2290 2988 483889688 483889004 7.230000e-127 464.0
4 TraesCS7B01G263200 chr7B 85.366 205 26 3 2016 2217 483889892 483889689 3.740000e-50 209.0
5 TraesCS7B01G263200 chr7B 95.918 49 1 1 2247 2295 651450544 651450497 1.100000e-10 78.7
6 TraesCS7B01G263200 chr7B 100.000 40 0 0 2247 2286 472327478 472327517 1.420000e-09 75.0
7 TraesCS7B01G263200 chr7B 100.000 40 0 0 2247 2286 472394349 472394388 1.420000e-09 75.0
8 TraesCS7B01G263200 chr7B 84.932 73 11 0 2216 2288 685069833 685069905 1.420000e-09 75.0
9 TraesCS7B01G263200 chr7D 95.022 1386 58 5 2290 3673 461399625 461398249 0.000000e+00 2167.0
10 TraesCS7B01G263200 chr7D 95.833 1344 47 2 880 2217 461400966 461399626 0.000000e+00 2163.0
11 TraesCS7B01G263200 chr7D 95.556 45 2 0 2247 2291 413234061 413234017 5.120000e-09 73.1
12 TraesCS7B01G263200 chr1D 95.349 817 32 4 1 812 209756753 209757568 0.000000e+00 1293.0
13 TraesCS7B01G263200 chr1D 87.591 137 17 0 1173 1309 478992224 478992088 3.820000e-35 159.0
14 TraesCS7B01G263200 chr1D 97.222 36 1 0 2207 2242 446007206 446007171 1.110000e-05 62.1
15 TraesCS7B01G263200 chr1B 95.191 811 31 6 4 808 311135057 311134249 0.000000e+00 1275.0
16 TraesCS7B01G263200 chr1B 96.021 779 30 1 1 778 566610647 566611425 0.000000e+00 1266.0
17 TraesCS7B01G263200 chr1B 86.957 138 18 0 1172 1309 667058756 667058619 4.940000e-34 156.0
18 TraesCS7B01G263200 chr1B 85.612 139 20 0 1171 1309 667136272 667136134 2.970000e-31 147.0
19 TraesCS7B01G263200 chr6B 94.815 810 37 3 4 808 643871367 643870558 0.000000e+00 1258.0
20 TraesCS7B01G263200 chr6B 94.118 816 36 5 1 805 711405469 711406283 0.000000e+00 1230.0
21 TraesCS7B01G263200 chr6B 87.059 85 8 2 2211 2294 82331399 82331317 3.930000e-15 93.5
22 TraesCS7B01G263200 chr6B 87.500 80 8 1 2215 2294 82420288 82420211 1.410000e-14 91.6
23 TraesCS7B01G263200 chr5B 94.691 810 38 3 4 808 693956881 693956072 0.000000e+00 1253.0
24 TraesCS7B01G263200 chr5B 94.212 812 41 4 4 810 202891608 202890798 0.000000e+00 1234.0
25 TraesCS7B01G263200 chr2B 94.444 810 35 5 7 811 749862249 749861445 0.000000e+00 1238.0
26 TraesCS7B01G263200 chr7A 85.648 857 79 19 1364 2217 538733635 538734450 0.000000e+00 861.0
27 TraesCS7B01G263200 chr7A 83.854 768 105 13 2287 3043 538734448 538735207 0.000000e+00 713.0
28 TraesCS7B01G263200 chr7A 89.366 536 39 7 837 1368 538711148 538711669 0.000000e+00 658.0
29 TraesCS7B01G263200 chr7A 85.455 440 41 13 3072 3495 538734974 538735406 1.580000e-118 436.0
30 TraesCS7B01G263200 chr7A 100.000 40 0 0 2247 2286 124795731 124795692 1.420000e-09 75.0
31 TraesCS7B01G263200 chr5A 89.313 131 14 0 1177 1307 77791589 77791459 8.210000e-37 165.0
32 TraesCS7B01G263200 chr1A 76.596 329 60 10 1171 1495 575227601 575227286 8.210000e-37 165.0
33 TraesCS7B01G263200 chr1A 76.596 329 60 10 1171 1495 575246072 575245757 8.210000e-37 165.0
34 TraesCS7B01G263200 chr4D 97.619 42 1 0 2247 2288 370369259 370369300 5.120000e-09 73.1
35 TraesCS7B01G263200 chr3D 97.222 36 1 0 2214 2249 79510966 79510931 1.110000e-05 62.1
36 TraesCS7B01G263200 chr4B 97.143 35 1 0 2215 2249 480055164 480055130 3.990000e-05 60.2
37 TraesCS7B01G263200 chr4B 88.889 45 4 1 2213 2256 527154569 527154613 2.000000e-03 54.7
38 TraesCS7B01G263200 chr4B 88.889 45 4 1 2213 2256 527171374 527171418 2.000000e-03 54.7
39 TraesCS7B01G263200 chr4A 97.143 35 1 0 2215 2249 255307030 255306996 3.990000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G263200 chr7B 483865012 483868706 3694 True 6824.000000 6824 100.000000 1 3695 1 chr7B.!!$R1 3694
1 TraesCS7B01G263200 chr7B 639856835 639857642 807 False 1251.000000 1251 94.691000 1 805 1 chr7B.!!$F3 804
2 TraesCS7B01G263200 chr7B 483889004 483891119 2115 True 616.666667 1177 83.452000 891 2988 3 chr7B.!!$R3 2097
3 TraesCS7B01G263200 chr7D 461398249 461400966 2717 True 2165.000000 2167 95.427500 880 3673 2 chr7D.!!$R2 2793
4 TraesCS7B01G263200 chr1D 209756753 209757568 815 False 1293.000000 1293 95.349000 1 812 1 chr1D.!!$F1 811
5 TraesCS7B01G263200 chr1B 311134249 311135057 808 True 1275.000000 1275 95.191000 4 808 1 chr1B.!!$R1 804
6 TraesCS7B01G263200 chr1B 566610647 566611425 778 False 1266.000000 1266 96.021000 1 778 1 chr1B.!!$F1 777
7 TraesCS7B01G263200 chr6B 643870558 643871367 809 True 1258.000000 1258 94.815000 4 808 1 chr6B.!!$R3 804
8 TraesCS7B01G263200 chr6B 711405469 711406283 814 False 1230.000000 1230 94.118000 1 805 1 chr6B.!!$F1 804
9 TraesCS7B01G263200 chr5B 693956072 693956881 809 True 1253.000000 1253 94.691000 4 808 1 chr5B.!!$R2 804
10 TraesCS7B01G263200 chr5B 202890798 202891608 810 True 1234.000000 1234 94.212000 4 810 1 chr5B.!!$R1 806
11 TraesCS7B01G263200 chr2B 749861445 749862249 804 True 1238.000000 1238 94.444000 7 811 1 chr2B.!!$R1 804
12 TraesCS7B01G263200 chr7A 538733635 538735406 1771 False 670.000000 861 84.985667 1364 3495 3 chr7A.!!$F2 2131
13 TraesCS7B01G263200 chr7A 538711148 538711669 521 False 658.000000 658 89.366000 837 1368 1 chr7A.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 830 0.108329 ACGCCCATAGTGAACTTCGG 60.108 55.0 0.0 0.0 0.0 4.30 F
819 831 0.174845 CGCCCATAGTGAACTTCGGA 59.825 55.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2630 2770 0.169009 GATGTCCTCAAGTTTGCGGC 59.831 55.000 0.0 0.0 33.15 6.53 R
2777 2922 6.377146 AGGAACTTCAAAGCACTAGAAACAAA 59.623 34.615 0.0 0.0 27.25 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
312 314 0.687354 GTTCAAGCTCCTCACTCCCA 59.313 55.000 0.00 0.00 0.00 4.37
413 415 4.020878 AAGGAGTAGGGCCGGGGT 62.021 66.667 2.18 0.00 0.00 4.95
430 432 3.969466 GGGTCTCCCTAAGTACTACCT 57.031 52.381 8.30 0.00 41.34 3.08
432 434 5.597430 GGGTCTCCCTAAGTACTACCTAT 57.403 47.826 8.30 0.00 41.34 2.57
475 477 5.467705 AGAACTGTTATGAACTGTCGTACC 58.532 41.667 0.00 0.00 41.84 3.34
477 479 3.254166 ACTGTTATGAACTGTCGTACCGT 59.746 43.478 0.00 0.00 38.97 4.83
493 495 9.401873 TGTCGTACCGTTTATATCTGAATTATG 57.598 33.333 0.00 0.00 0.00 1.90
549 551 0.819259 ATGTGTGCTGCCGAAGTGTT 60.819 50.000 0.00 0.00 0.00 3.32
562 564 3.399330 CGAAGTGTTGTGGTAACCTCAT 58.601 45.455 0.00 0.00 0.00 2.90
640 648 3.895041 CCTTGGGTTTGTGGACTAACATT 59.105 43.478 6.47 0.00 34.16 2.71
661 669 2.027460 GCAACCAAACACCAGGCG 59.973 61.111 0.00 0.00 0.00 5.52
662 670 2.027460 CAACCAAACACCAGGCGC 59.973 61.111 0.00 0.00 0.00 6.53
707 715 1.297364 GGCATGCAGGCAACCAAAT 59.703 52.632 26.25 0.00 43.51 2.32
710 718 2.420408 GGCATGCAGGCAACCAAATAAT 60.420 45.455 26.25 0.00 43.51 1.28
812 824 1.202830 ACCAAACACGCCCATAGTGAA 60.203 47.619 3.20 0.00 41.83 3.18
813 825 1.199097 CCAAACACGCCCATAGTGAAC 59.801 52.381 3.20 0.00 41.83 3.18
814 826 2.151202 CAAACACGCCCATAGTGAACT 58.849 47.619 3.20 0.00 41.83 3.01
815 827 2.552315 CAAACACGCCCATAGTGAACTT 59.448 45.455 3.20 0.00 41.83 2.66
816 828 2.094762 ACACGCCCATAGTGAACTTC 57.905 50.000 3.20 0.00 41.83 3.01
817 829 0.999406 CACGCCCATAGTGAACTTCG 59.001 55.000 0.00 0.00 41.83 3.79
818 830 0.108329 ACGCCCATAGTGAACTTCGG 60.108 55.000 0.00 0.00 0.00 4.30
819 831 0.174845 CGCCCATAGTGAACTTCGGA 59.825 55.000 0.00 0.00 0.00 4.55
820 832 1.404986 CGCCCATAGTGAACTTCGGAA 60.405 52.381 0.00 0.00 0.00 4.30
821 833 2.706890 GCCCATAGTGAACTTCGGAAA 58.293 47.619 0.00 0.00 0.00 3.13
822 834 3.078837 GCCCATAGTGAACTTCGGAAAA 58.921 45.455 0.00 0.00 0.00 2.29
823 835 3.127030 GCCCATAGTGAACTTCGGAAAAG 59.873 47.826 0.00 0.00 0.00 2.27
824 836 4.575885 CCCATAGTGAACTTCGGAAAAGA 58.424 43.478 0.00 0.00 0.00 2.52
825 837 5.001232 CCCATAGTGAACTTCGGAAAAGAA 58.999 41.667 0.00 0.00 0.00 2.52
826 838 5.472137 CCCATAGTGAACTTCGGAAAAGAAA 59.528 40.000 0.00 0.00 0.00 2.52
827 839 6.016610 CCCATAGTGAACTTCGGAAAAGAAAA 60.017 38.462 0.00 0.00 0.00 2.29
828 840 7.422399 CCATAGTGAACTTCGGAAAAGAAAAA 58.578 34.615 0.00 0.00 0.00 1.94
850 862 4.354893 AAATGCAATCCCTTCAAAGCAA 57.645 36.364 0.00 0.00 35.45 3.91
859 871 6.866010 ATCCCTTCAAAGCAAAAATGAAAC 57.134 33.333 0.00 0.00 33.08 2.78
867 879 8.994429 TCAAAGCAAAAATGAAACAAACTAGA 57.006 26.923 0.00 0.00 0.00 2.43
870 882 9.651913 AAAGCAAAAATGAAACAAACTAGAAGA 57.348 25.926 0.00 0.00 0.00 2.87
871 883 9.651913 AAGCAAAAATGAAACAAACTAGAAGAA 57.348 25.926 0.00 0.00 0.00 2.52
872 884 9.305925 AGCAAAAATGAAACAAACTAGAAGAAG 57.694 29.630 0.00 0.00 0.00 2.85
873 885 9.301153 GCAAAAATGAAACAAACTAGAAGAAGA 57.699 29.630 0.00 0.00 0.00 2.87
878 890 9.468532 AATGAAACAAACTAGAAGAAGATTTGC 57.531 29.630 0.00 0.00 34.34 3.68
884 896 5.262455 ACTAGAAGAAGATTTGCCCCTTT 57.738 39.130 0.00 0.00 0.00 3.11
888 900 2.812658 AGAAGATTTGCCCCTTTCCTG 58.187 47.619 0.00 0.00 0.00 3.86
1048 1067 4.891992 TCCAAGAAGAGAAAATCGGAGT 57.108 40.909 0.00 0.00 0.00 3.85
1093 1112 3.206150 GAAATCTTAAGCCATGAGCCGA 58.794 45.455 0.00 0.00 45.47 5.54
1137 1159 1.136305 GAATCCGACATCCGAGAACCA 59.864 52.381 0.00 0.00 41.76 3.67
1138 1160 0.460311 ATCCGACATCCGAGAACCAC 59.540 55.000 0.00 0.00 41.76 4.16
1142 1164 2.227089 GACATCCGAGAACCACCGCT 62.227 60.000 0.00 0.00 0.00 5.52
1221 1243 0.970937 TCGGCGACTTCATCTCCCTT 60.971 55.000 4.99 0.00 0.00 3.95
1341 1363 2.427232 CCGAAGGTGACAACGTTCTA 57.573 50.000 0.00 0.00 45.03 2.10
1497 1519 3.540014 CTCGAGTTCTGCTGCGCG 61.540 66.667 0.00 0.00 0.00 6.86
1868 1890 2.435372 AGGTTGCTCCAACTCAACAA 57.565 45.000 7.88 0.00 43.14 2.83
1999 2030 4.279922 TCACGTCTAACCTCATTTGTCAGA 59.720 41.667 0.00 0.00 0.00 3.27
2048 2186 6.482898 TTTATATGGCCTGATGCAATGTTT 57.517 33.333 3.32 0.00 43.89 2.83
2091 2231 2.305927 ACTCTGTTCCCAATGGTGGTAG 59.694 50.000 0.00 0.00 44.30 3.18
2190 2330 4.747108 CCTGCTTGGAGAAGTTGTATATCG 59.253 45.833 0.00 0.00 38.35 2.92
2199 2339 6.040166 GGAGAAGTTGTATATCGAGGTAACCA 59.960 42.308 0.00 0.00 37.17 3.67
2203 2343 6.444633 AGTTGTATATCGAGGTAACCATTCG 58.555 40.000 0.00 0.00 35.76 3.34
2204 2344 6.040166 AGTTGTATATCGAGGTAACCATTCGT 59.960 38.462 0.00 0.00 35.90 3.85
2217 2357 5.607119 AACCATTCGTCTGTGATTTGTAC 57.393 39.130 0.00 0.00 0.00 2.90
2218 2358 4.894784 ACCATTCGTCTGTGATTTGTACT 58.105 39.130 0.00 0.00 0.00 2.73
2219 2359 4.929808 ACCATTCGTCTGTGATTTGTACTC 59.070 41.667 0.00 0.00 0.00 2.59
2220 2360 4.330074 CCATTCGTCTGTGATTTGTACTCC 59.670 45.833 0.00 0.00 0.00 3.85
2221 2361 3.587797 TCGTCTGTGATTTGTACTCCC 57.412 47.619 0.00 0.00 0.00 4.30
2222 2362 3.162666 TCGTCTGTGATTTGTACTCCCT 58.837 45.455 0.00 0.00 0.00 4.20
2223 2363 3.192844 TCGTCTGTGATTTGTACTCCCTC 59.807 47.826 0.00 0.00 0.00 4.30
2224 2364 3.676324 CGTCTGTGATTTGTACTCCCTCC 60.676 52.174 0.00 0.00 0.00 4.30
2225 2365 3.260884 GTCTGTGATTTGTACTCCCTCCA 59.739 47.826 0.00 0.00 0.00 3.86
2226 2366 4.080863 GTCTGTGATTTGTACTCCCTCCAT 60.081 45.833 0.00 0.00 0.00 3.41
2227 2367 4.536090 TCTGTGATTTGTACTCCCTCCATT 59.464 41.667 0.00 0.00 0.00 3.16
2228 2368 4.843728 TGTGATTTGTACTCCCTCCATTC 58.156 43.478 0.00 0.00 0.00 2.67
2229 2369 4.200092 GTGATTTGTACTCCCTCCATTCC 58.800 47.826 0.00 0.00 0.00 3.01
2230 2370 3.849574 TGATTTGTACTCCCTCCATTCCA 59.150 43.478 0.00 0.00 0.00 3.53
2231 2371 4.290985 TGATTTGTACTCCCTCCATTCCAA 59.709 41.667 0.00 0.00 0.00 3.53
2232 2372 4.733077 TTTGTACTCCCTCCATTCCAAA 57.267 40.909 0.00 0.00 0.00 3.28
2233 2373 4.733077 TTGTACTCCCTCCATTCCAAAA 57.267 40.909 0.00 0.00 0.00 2.44
2234 2374 4.946160 TGTACTCCCTCCATTCCAAAAT 57.054 40.909 0.00 0.00 0.00 1.82
2235 2375 6.395780 TTGTACTCCCTCCATTCCAAAATA 57.604 37.500 0.00 0.00 0.00 1.40
2236 2376 6.395780 TGTACTCCCTCCATTCCAAAATAA 57.604 37.500 0.00 0.00 0.00 1.40
2237 2377 6.423182 TGTACTCCCTCCATTCCAAAATAAG 58.577 40.000 0.00 0.00 0.00 1.73
2238 2378 5.536497 ACTCCCTCCATTCCAAAATAAGT 57.464 39.130 0.00 0.00 0.00 2.24
2239 2379 5.264395 ACTCCCTCCATTCCAAAATAAGTG 58.736 41.667 0.00 0.00 0.00 3.16
2240 2380 5.222337 ACTCCCTCCATTCCAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
2241 2381 5.261216 TCCCTCCATTCCAAAATAAGTGTC 58.739 41.667 0.00 0.00 0.00 3.67
2242 2382 4.402474 CCCTCCATTCCAAAATAAGTGTCC 59.598 45.833 0.00 0.00 0.00 4.02
2243 2383 5.264395 CCTCCATTCCAAAATAAGTGTCCT 58.736 41.667 0.00 0.00 0.00 3.85
2244 2384 5.126061 CCTCCATTCCAAAATAAGTGTCCTG 59.874 44.000 0.00 0.00 0.00 3.86
2245 2385 5.016173 TCCATTCCAAAATAAGTGTCCTGG 58.984 41.667 0.00 0.00 0.00 4.45
2246 2386 4.772100 CCATTCCAAAATAAGTGTCCTGGT 59.228 41.667 0.00 0.00 0.00 4.00
2247 2387 5.245977 CCATTCCAAAATAAGTGTCCTGGTT 59.754 40.000 0.00 0.00 0.00 3.67
2248 2388 6.239572 CCATTCCAAAATAAGTGTCCTGGTTT 60.240 38.462 0.00 0.00 0.00 3.27
2249 2389 5.782893 TCCAAAATAAGTGTCCTGGTTTG 57.217 39.130 0.00 0.00 0.00 2.93
2250 2390 5.450453 TCCAAAATAAGTGTCCTGGTTTGA 58.550 37.500 0.00 0.00 0.00 2.69
2251 2391 5.894393 TCCAAAATAAGTGTCCTGGTTTGAA 59.106 36.000 0.00 0.00 0.00 2.69
2252 2392 5.983118 CCAAAATAAGTGTCCTGGTTTGAAC 59.017 40.000 0.00 0.00 0.00 3.18
2253 2393 6.183360 CCAAAATAAGTGTCCTGGTTTGAACT 60.183 38.462 0.00 0.00 0.00 3.01
2254 2394 7.013846 CCAAAATAAGTGTCCTGGTTTGAACTA 59.986 37.037 0.00 0.00 0.00 2.24
2255 2395 8.410141 CAAAATAAGTGTCCTGGTTTGAACTAA 58.590 33.333 0.00 0.00 0.00 2.24
2256 2396 8.528044 AAATAAGTGTCCTGGTTTGAACTAAA 57.472 30.769 0.00 0.00 0.00 1.85
2257 2397 8.528044 AATAAGTGTCCTGGTTTGAACTAAAA 57.472 30.769 0.00 0.00 0.00 1.52
2258 2398 5.830000 AGTGTCCTGGTTTGAACTAAAAC 57.170 39.130 0.00 0.00 38.96 2.43
2270 2410 8.920509 GTTTGAACTAAAACCACAACACTTAT 57.079 30.769 0.00 0.00 34.58 1.73
2271 2411 9.361315 GTTTGAACTAAAACCACAACACTTATT 57.639 29.630 0.00 0.00 34.58 1.40
2272 2412 9.930693 TTTGAACTAAAACCACAACACTTATTT 57.069 25.926 0.00 0.00 0.00 1.40
2273 2413 9.930693 TTGAACTAAAACCACAACACTTATTTT 57.069 25.926 0.00 0.00 0.00 1.82
2274 2414 9.360093 TGAACTAAAACCACAACACTTATTTTG 57.640 29.630 0.00 0.00 0.00 2.44
2275 2415 8.710835 AACTAAAACCACAACACTTATTTTGG 57.289 30.769 0.00 0.00 0.00 3.28
2276 2416 8.068892 ACTAAAACCACAACACTTATTTTGGA 57.931 30.769 0.00 0.00 0.00 3.53
2277 2417 8.532819 ACTAAAACCACAACACTTATTTTGGAA 58.467 29.630 0.00 0.00 0.00 3.53
2278 2418 9.541143 CTAAAACCACAACACTTATTTTGGAAT 57.459 29.630 0.00 0.00 0.00 3.01
2279 2419 7.784633 AAACCACAACACTTATTTTGGAATG 57.215 32.000 0.00 0.00 0.00 2.67
2280 2420 5.852827 ACCACAACACTTATTTTGGAATGG 58.147 37.500 0.00 0.00 0.00 3.16
2281 2421 5.600484 ACCACAACACTTATTTTGGAATGGA 59.400 36.000 0.00 0.00 0.00 3.41
2282 2422 6.158598 CCACAACACTTATTTTGGAATGGAG 58.841 40.000 0.00 0.00 0.00 3.86
2283 2423 6.158598 CACAACACTTATTTTGGAATGGAGG 58.841 40.000 0.00 0.00 0.00 4.30
2284 2424 5.245977 ACAACACTTATTTTGGAATGGAGGG 59.754 40.000 0.00 0.00 0.00 4.30
2285 2425 5.269554 ACACTTATTTTGGAATGGAGGGA 57.730 39.130 0.00 0.00 0.00 4.20
2286 2426 5.264395 ACACTTATTTTGGAATGGAGGGAG 58.736 41.667 0.00 0.00 0.00 4.30
2287 2427 5.222337 ACACTTATTTTGGAATGGAGGGAGT 60.222 40.000 0.00 0.00 0.00 3.85
2288 2428 5.126061 CACTTATTTTGGAATGGAGGGAGTG 59.874 44.000 0.00 0.00 0.00 3.51
2295 2435 2.092914 GGAATGGAGGGAGTGGTGTTAG 60.093 54.545 0.00 0.00 0.00 2.34
2303 2443 3.587506 AGGGAGTGGTGTTAGCTGTTAAT 59.412 43.478 0.00 0.00 0.00 1.40
2304 2444 3.689649 GGGAGTGGTGTTAGCTGTTAATG 59.310 47.826 0.00 0.00 0.00 1.90
2330 2470 6.268566 ACTCTTTGCATGAACTTTTGTCTTC 58.731 36.000 0.00 0.00 0.00 2.87
2347 2487 8.421249 TTTGTCTTCCCATTTTCAGATATGTT 57.579 30.769 0.00 0.00 0.00 2.71
2348 2488 8.421249 TTGTCTTCCCATTTTCAGATATGTTT 57.579 30.769 0.00 0.00 0.00 2.83
2360 2500 2.498481 AGATATGTTTGTCGTCGGGGAA 59.502 45.455 0.00 0.00 0.00 3.97
2370 2510 2.615447 GTCGTCGGGGAAAAAGAGTTTT 59.385 45.455 0.00 0.00 39.70 2.43
2630 2770 6.480524 TGTTTTCACAAAGGATAGATGTCG 57.519 37.500 0.00 0.00 0.00 4.35
2713 2858 5.068329 TGCTGATGTTGACATTTGGTTGTTA 59.932 36.000 0.00 0.00 36.57 2.41
2856 3001 9.372369 ACTAACTATGCAGAATCTGTAAAAGAC 57.628 33.333 12.29 0.00 37.88 3.01
2963 3109 6.050432 TGTGTACGTTTTCTTAACATCCTGT 58.950 36.000 0.00 0.00 0.00 4.00
2994 3140 7.451877 TCCCTAAAACTGAGCTACATCCTATAG 59.548 40.741 0.00 0.00 0.00 1.31
3090 3236 5.405269 GCATTTGGAACCTTGTGATGTTTAC 59.595 40.000 0.00 0.00 0.00 2.01
3101 3247 6.531240 CCTTGTGATGTTTACACCAATTATGC 59.469 38.462 0.00 0.00 37.45 3.14
3102 3248 5.635866 TGTGATGTTTACACCAATTATGCG 58.364 37.500 0.00 0.00 37.45 4.73
3253 3408 6.864342 TCTAAAACTGAGCTACATCCTACAC 58.136 40.000 0.00 0.00 0.00 2.90
3320 3475 6.489361 ACTTTGTCTCTGCTCTTTTCATTCAT 59.511 34.615 0.00 0.00 0.00 2.57
3337 3492 7.694388 TCATTCATTAGTACGTACATCTTGC 57.306 36.000 26.55 0.00 0.00 4.01
3461 3626 2.673610 CGAGCATCTATCTAGCCTTGGC 60.674 54.545 2.97 2.97 0.00 4.52
3473 3638 0.034670 GCCTTGGCTGGAGTTGAGAT 60.035 55.000 4.11 0.00 0.00 2.75
3577 3745 1.202330 CCCTTCATCTGTCTGCTCCT 58.798 55.000 0.00 0.00 0.00 3.69
3592 3760 2.001076 CTCCTTTTTGCCCTTCCAGT 57.999 50.000 0.00 0.00 0.00 4.00
3593 3761 1.889170 CTCCTTTTTGCCCTTCCAGTC 59.111 52.381 0.00 0.00 0.00 3.51
3594 3762 1.499007 TCCTTTTTGCCCTTCCAGTCT 59.501 47.619 0.00 0.00 0.00 3.24
3595 3763 1.615392 CCTTTTTGCCCTTCCAGTCTG 59.385 52.381 0.00 0.00 0.00 3.51
3596 3764 2.310538 CTTTTTGCCCTTCCAGTCTGT 58.689 47.619 0.00 0.00 0.00 3.41
3597 3765 3.486383 CTTTTTGCCCTTCCAGTCTGTA 58.514 45.455 0.00 0.00 0.00 2.74
3598 3766 3.806949 TTTTGCCCTTCCAGTCTGTAT 57.193 42.857 0.00 0.00 0.00 2.29
3676 3844 8.632679 TCTGATAATTCCTTGGTTTCATATTGC 58.367 33.333 0.00 0.00 0.00 3.56
3677 3845 7.725251 TGATAATTCCTTGGTTTCATATTGCC 58.275 34.615 0.00 0.00 0.00 4.52
3678 3846 7.564660 TGATAATTCCTTGGTTTCATATTGCCT 59.435 33.333 0.00 0.00 0.00 4.75
3679 3847 5.859205 ATTCCTTGGTTTCATATTGCCTC 57.141 39.130 0.00 0.00 0.00 4.70
3680 3848 3.631250 TCCTTGGTTTCATATTGCCTCC 58.369 45.455 0.00 0.00 0.00 4.30
3681 3849 2.358898 CCTTGGTTTCATATTGCCTCCG 59.641 50.000 0.00 0.00 0.00 4.63
3682 3850 2.799126 TGGTTTCATATTGCCTCCGT 57.201 45.000 0.00 0.00 0.00 4.69
3683 3851 3.080300 TGGTTTCATATTGCCTCCGTT 57.920 42.857 0.00 0.00 0.00 4.44
3684 3852 3.013921 TGGTTTCATATTGCCTCCGTTC 58.986 45.455 0.00 0.00 0.00 3.95
3685 3853 2.357952 GGTTTCATATTGCCTCCGTTCC 59.642 50.000 0.00 0.00 0.00 3.62
3686 3854 3.279434 GTTTCATATTGCCTCCGTTCCT 58.721 45.455 0.00 0.00 0.00 3.36
3687 3855 4.448210 GTTTCATATTGCCTCCGTTCCTA 58.552 43.478 0.00 0.00 0.00 2.94
3688 3856 4.764050 TTCATATTGCCTCCGTTCCTAA 57.236 40.909 0.00 0.00 0.00 2.69
3689 3857 4.764050 TCATATTGCCTCCGTTCCTAAA 57.236 40.909 0.00 0.00 0.00 1.85
3690 3858 5.304686 TCATATTGCCTCCGTTCCTAAAT 57.695 39.130 0.00 0.00 0.00 1.40
3691 3859 6.428083 TCATATTGCCTCCGTTCCTAAATA 57.572 37.500 0.00 0.00 0.00 1.40
3692 3860 7.016153 TCATATTGCCTCCGTTCCTAAATAT 57.984 36.000 0.00 0.00 0.00 1.28
3693 3861 8.141298 TCATATTGCCTCCGTTCCTAAATATA 57.859 34.615 0.00 0.00 0.00 0.86
3694 3862 8.598916 TCATATTGCCTCCGTTCCTAAATATAA 58.401 33.333 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
413 415 6.102910 AGCAGAATAGGTAGTACTTAGGGAGA 59.897 42.308 0.00 0.00 0.00 3.71
428 430 4.997395 ACGCATAAACCATAGCAGAATAGG 59.003 41.667 0.00 0.00 0.00 2.57
430 432 6.988522 TCTACGCATAAACCATAGCAGAATA 58.011 36.000 0.00 0.00 0.00 1.75
432 434 5.270893 TCTACGCATAAACCATAGCAGAA 57.729 39.130 0.00 0.00 0.00 3.02
493 495 7.976734 ACAGAGTATAAACAGAGCATCAACTAC 59.023 37.037 0.00 0.00 37.82 2.73
549 551 3.055385 GGCTAGTTGATGAGGTTACCACA 60.055 47.826 3.66 3.66 0.00 4.17
562 564 3.649023 TGGTAACCTCTTTGGCTAGTTGA 59.351 43.478 0.00 0.00 40.22 3.18
640 648 0.754957 CCTGGTGTTTGGTTGCCTGA 60.755 55.000 0.00 0.00 0.00 3.86
662 670 1.592400 CTGCATGGGCTGAACCACAG 61.592 60.000 0.00 0.00 44.72 3.66
746 754 0.764890 CACTTCTCCACCCAACCTGA 59.235 55.000 0.00 0.00 0.00 3.86
827 839 4.716794 TGCTTTGAAGGGATTGCATTTTT 58.283 34.783 0.00 0.00 0.00 1.94
828 840 4.354893 TGCTTTGAAGGGATTGCATTTT 57.645 36.364 0.00 0.00 0.00 1.82
829 841 4.354893 TTGCTTTGAAGGGATTGCATTT 57.645 36.364 0.00 0.00 0.00 2.32
830 842 4.354893 TTTGCTTTGAAGGGATTGCATT 57.645 36.364 0.00 0.00 0.00 3.56
831 843 4.354893 TTTTGCTTTGAAGGGATTGCAT 57.645 36.364 0.00 0.00 0.00 3.96
832 844 3.834489 TTTTGCTTTGAAGGGATTGCA 57.166 38.095 0.00 0.00 0.00 4.08
833 845 4.756135 TCATTTTTGCTTTGAAGGGATTGC 59.244 37.500 0.00 0.00 0.00 3.56
834 846 6.864360 TTCATTTTTGCTTTGAAGGGATTG 57.136 33.333 0.00 0.00 0.00 2.67
835 847 6.827762 TGTTTCATTTTTGCTTTGAAGGGATT 59.172 30.769 0.00 0.00 31.54 3.01
841 853 9.429359 TCTAGTTTGTTTCATTTTTGCTTTGAA 57.571 25.926 0.00 0.00 0.00 2.69
859 871 5.012893 AGGGGCAAATCTTCTTCTAGTTTG 58.987 41.667 0.00 0.00 33.98 2.93
867 879 3.168292 CAGGAAAGGGGCAAATCTTCTT 58.832 45.455 0.00 0.00 0.00 2.52
870 882 2.158325 TGTCAGGAAAGGGGCAAATCTT 60.158 45.455 0.00 0.00 0.00 2.40
871 883 1.428912 TGTCAGGAAAGGGGCAAATCT 59.571 47.619 0.00 0.00 0.00 2.40
872 884 1.923356 TGTCAGGAAAGGGGCAAATC 58.077 50.000 0.00 0.00 0.00 2.17
873 885 2.250924 CTTGTCAGGAAAGGGGCAAAT 58.749 47.619 0.00 0.00 0.00 2.32
874 886 1.703411 CTTGTCAGGAAAGGGGCAAA 58.297 50.000 0.00 0.00 0.00 3.68
875 887 0.827507 GCTTGTCAGGAAAGGGGCAA 60.828 55.000 0.00 0.00 0.00 4.52
876 888 1.228552 GCTTGTCAGGAAAGGGGCA 60.229 57.895 0.00 0.00 0.00 5.36
877 889 1.979155 GGCTTGTCAGGAAAGGGGC 60.979 63.158 0.00 0.00 0.00 5.80
878 890 0.322906 GAGGCTTGTCAGGAAAGGGG 60.323 60.000 0.00 0.00 0.00 4.79
884 896 0.110486 GGGTTTGAGGCTTGTCAGGA 59.890 55.000 0.00 0.00 0.00 3.86
888 900 1.239347 GTGAGGGTTTGAGGCTTGTC 58.761 55.000 0.00 0.00 0.00 3.18
990 1009 1.077501 CATCTCCATGGCCGGTTGT 60.078 57.895 6.96 0.00 0.00 3.32
992 1011 2.597340 CCATCTCCATGGCCGGTT 59.403 61.111 6.96 0.00 43.55 4.44
1027 1046 4.891992 ACTCCGATTTTCTCTTCTTGGA 57.108 40.909 0.00 0.00 0.00 3.53
1079 1098 2.499205 CCGTCGGCTCATGGCTTA 59.501 61.111 0.00 0.00 41.46 3.09
1210 1232 1.584724 GTGGGGAGAAGGGAGATGAA 58.415 55.000 0.00 0.00 0.00 2.57
1333 1355 4.569564 GGAAATGAGGCGTATTAGAACGTT 59.430 41.667 0.00 0.00 44.64 3.99
1341 1363 3.496870 GGATCTGGGAAATGAGGCGTATT 60.497 47.826 0.00 0.00 0.00 1.89
1416 1438 3.047877 GTGGCAGCGTGGTGGTAC 61.048 66.667 0.82 0.00 0.00 3.34
1497 1519 1.144057 CAGTACCAGTGGATCGCCC 59.856 63.158 18.40 0.00 0.00 6.13
1500 1522 1.226974 CGGCAGTACCAGTGGATCG 60.227 63.158 18.40 6.21 39.03 3.69
1868 1890 3.740141 CGATATGTCCAAGCCCGTAGTTT 60.740 47.826 0.00 0.00 0.00 2.66
1999 2030 7.592885 ATGCAGATAGTATGAATTTTGCCTT 57.407 32.000 0.00 0.00 0.00 4.35
2091 2231 8.682710 AGAGATAGATAAAGTCTTGACAGTGTC 58.317 37.037 16.68 16.68 38.42 3.67
2190 2330 3.587797 TCACAGACGAATGGTTACCTC 57.412 47.619 2.07 0.00 0.00 3.85
2199 2339 4.223032 AGGGAGTACAAATCACAGACGAAT 59.777 41.667 0.00 0.00 0.00 3.34
2203 2343 3.260884 TGGAGGGAGTACAAATCACAGAC 59.739 47.826 0.00 0.00 0.00 3.51
2204 2344 3.516586 TGGAGGGAGTACAAATCACAGA 58.483 45.455 0.00 0.00 0.00 3.41
2217 2357 5.264395 ACACTTATTTTGGAATGGAGGGAG 58.736 41.667 0.00 0.00 0.00 4.30
2218 2358 5.261216 GACACTTATTTTGGAATGGAGGGA 58.739 41.667 0.00 0.00 0.00 4.20
2219 2359 4.402474 GGACACTTATTTTGGAATGGAGGG 59.598 45.833 0.00 0.00 0.00 4.30
2220 2360 5.126061 CAGGACACTTATTTTGGAATGGAGG 59.874 44.000 0.00 0.00 0.00 4.30
2221 2361 5.126061 CCAGGACACTTATTTTGGAATGGAG 59.874 44.000 0.00 0.00 0.00 3.86
2222 2362 5.016173 CCAGGACACTTATTTTGGAATGGA 58.984 41.667 0.00 0.00 0.00 3.41
2223 2363 4.772100 ACCAGGACACTTATTTTGGAATGG 59.228 41.667 0.00 0.00 0.00 3.16
2224 2364 5.982890 ACCAGGACACTTATTTTGGAATG 57.017 39.130 0.00 0.00 0.00 2.67
2225 2365 6.553100 TCAAACCAGGACACTTATTTTGGAAT 59.447 34.615 0.00 0.00 0.00 3.01
2226 2366 5.894393 TCAAACCAGGACACTTATTTTGGAA 59.106 36.000 0.00 0.00 0.00 3.53
2227 2367 5.450453 TCAAACCAGGACACTTATTTTGGA 58.550 37.500 0.00 0.00 0.00 3.53
2228 2368 5.782893 TCAAACCAGGACACTTATTTTGG 57.217 39.130 0.00 0.00 0.00 3.28
2229 2369 6.805713 AGTTCAAACCAGGACACTTATTTTG 58.194 36.000 0.00 0.00 0.00 2.44
2230 2370 8.528044 TTAGTTCAAACCAGGACACTTATTTT 57.472 30.769 0.00 0.00 0.00 1.82
2231 2371 8.528044 TTTAGTTCAAACCAGGACACTTATTT 57.472 30.769 0.00 0.00 0.00 1.40
2232 2372 8.410912 GTTTTAGTTCAAACCAGGACACTTATT 58.589 33.333 0.00 0.00 31.43 1.40
2233 2373 7.937649 GTTTTAGTTCAAACCAGGACACTTAT 58.062 34.615 0.00 0.00 31.43 1.73
2234 2374 7.324354 GTTTTAGTTCAAACCAGGACACTTA 57.676 36.000 0.00 0.00 31.43 2.24
2235 2375 6.203808 GTTTTAGTTCAAACCAGGACACTT 57.796 37.500 0.00 0.00 31.43 3.16
2236 2376 5.830000 GTTTTAGTTCAAACCAGGACACT 57.170 39.130 0.00 0.00 31.43 3.55
2245 2385 8.920509 ATAAGTGTTGTGGTTTTAGTTCAAAC 57.079 30.769 0.00 0.00 36.12 2.93
2246 2386 9.930693 AAATAAGTGTTGTGGTTTTAGTTCAAA 57.069 25.926 0.00 0.00 0.00 2.69
2247 2387 9.930693 AAAATAAGTGTTGTGGTTTTAGTTCAA 57.069 25.926 0.00 0.00 0.00 2.69
2248 2388 9.360093 CAAAATAAGTGTTGTGGTTTTAGTTCA 57.640 29.630 0.00 0.00 0.00 3.18
2249 2389 8.813282 CCAAAATAAGTGTTGTGGTTTTAGTTC 58.187 33.333 0.00 0.00 0.00 3.01
2250 2390 8.532819 TCCAAAATAAGTGTTGTGGTTTTAGTT 58.467 29.630 0.00 0.00 0.00 2.24
2251 2391 8.068892 TCCAAAATAAGTGTTGTGGTTTTAGT 57.931 30.769 0.00 0.00 0.00 2.24
2252 2392 8.934507 TTCCAAAATAAGTGTTGTGGTTTTAG 57.065 30.769 0.00 0.00 0.00 1.85
2253 2393 9.319143 CATTCCAAAATAAGTGTTGTGGTTTTA 57.681 29.630 0.00 0.00 0.00 1.52
2254 2394 7.281999 CCATTCCAAAATAAGTGTTGTGGTTTT 59.718 33.333 0.00 0.00 0.00 2.43
2255 2395 6.765512 CCATTCCAAAATAAGTGTTGTGGTTT 59.234 34.615 0.00 0.00 0.00 3.27
2256 2396 6.098982 TCCATTCCAAAATAAGTGTTGTGGTT 59.901 34.615 0.00 0.00 0.00 3.67
2257 2397 5.600484 TCCATTCCAAAATAAGTGTTGTGGT 59.400 36.000 0.00 0.00 0.00 4.16
2258 2398 6.095432 TCCATTCCAAAATAAGTGTTGTGG 57.905 37.500 0.00 0.00 0.00 4.17
2259 2399 6.158598 CCTCCATTCCAAAATAAGTGTTGTG 58.841 40.000 0.00 0.00 0.00 3.33
2260 2400 5.245977 CCCTCCATTCCAAAATAAGTGTTGT 59.754 40.000 0.00 0.00 0.00 3.32
2261 2401 5.480073 TCCCTCCATTCCAAAATAAGTGTTG 59.520 40.000 0.00 0.00 0.00 3.33
2262 2402 5.650283 TCCCTCCATTCCAAAATAAGTGTT 58.350 37.500 0.00 0.00 0.00 3.32
2263 2403 5.222337 ACTCCCTCCATTCCAAAATAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
2264 2404 5.126061 CACTCCCTCCATTCCAAAATAAGTG 59.874 44.000 0.00 0.00 0.00 3.16
2265 2405 5.264395 CACTCCCTCCATTCCAAAATAAGT 58.736 41.667 0.00 0.00 0.00 2.24
2266 2406 4.646492 CCACTCCCTCCATTCCAAAATAAG 59.354 45.833 0.00 0.00 0.00 1.73
2267 2407 4.045334 ACCACTCCCTCCATTCCAAAATAA 59.955 41.667 0.00 0.00 0.00 1.40
2268 2408 3.596046 ACCACTCCCTCCATTCCAAAATA 59.404 43.478 0.00 0.00 0.00 1.40
2269 2409 2.383338 ACCACTCCCTCCATTCCAAAAT 59.617 45.455 0.00 0.00 0.00 1.82
2270 2410 1.786441 ACCACTCCCTCCATTCCAAAA 59.214 47.619 0.00 0.00 0.00 2.44
2271 2411 1.075374 CACCACTCCCTCCATTCCAAA 59.925 52.381 0.00 0.00 0.00 3.28
2272 2412 0.698238 CACCACTCCCTCCATTCCAA 59.302 55.000 0.00 0.00 0.00 3.53
2273 2413 0.475632 ACACCACTCCCTCCATTCCA 60.476 55.000 0.00 0.00 0.00 3.53
2274 2414 0.698818 AACACCACTCCCTCCATTCC 59.301 55.000 0.00 0.00 0.00 3.01
2275 2415 2.681097 GCTAACACCACTCCCTCCATTC 60.681 54.545 0.00 0.00 0.00 2.67
2276 2416 1.282157 GCTAACACCACTCCCTCCATT 59.718 52.381 0.00 0.00 0.00 3.16
2277 2417 0.912486 GCTAACACCACTCCCTCCAT 59.088 55.000 0.00 0.00 0.00 3.41
2278 2418 0.178903 AGCTAACACCACTCCCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
2279 2419 0.250513 CAGCTAACACCACTCCCTCC 59.749 60.000 0.00 0.00 0.00 4.30
2280 2420 0.977395 ACAGCTAACACCACTCCCTC 59.023 55.000 0.00 0.00 0.00 4.30
2281 2421 1.435256 AACAGCTAACACCACTCCCT 58.565 50.000 0.00 0.00 0.00 4.20
2282 2422 3.412237 TTAACAGCTAACACCACTCCC 57.588 47.619 0.00 0.00 0.00 4.30
2283 2423 4.324267 ACATTAACAGCTAACACCACTCC 58.676 43.478 0.00 0.00 0.00 3.85
2284 2424 6.164176 AGTACATTAACAGCTAACACCACTC 58.836 40.000 0.00 0.00 0.00 3.51
2285 2425 6.014499 AGAGTACATTAACAGCTAACACCACT 60.014 38.462 0.00 0.00 0.00 4.00
2286 2426 6.164176 AGAGTACATTAACAGCTAACACCAC 58.836 40.000 0.00 0.00 0.00 4.16
2287 2427 6.354794 AGAGTACATTAACAGCTAACACCA 57.645 37.500 0.00 0.00 0.00 4.17
2288 2428 7.519002 CAAAGAGTACATTAACAGCTAACACC 58.481 38.462 0.00 0.00 0.00 4.16
2295 2435 6.182039 TCATGCAAAGAGTACATTAACAGC 57.818 37.500 0.00 0.00 0.00 4.40
2303 2443 6.318648 AGACAAAAGTTCATGCAAAGAGTACA 59.681 34.615 0.00 0.00 0.00 2.90
2304 2444 6.729187 AGACAAAAGTTCATGCAAAGAGTAC 58.271 36.000 0.00 0.00 0.00 2.73
2330 2470 6.194796 ACGACAAACATATCTGAAAATGGG 57.805 37.500 0.00 1.59 0.00 4.00
2347 2487 1.139455 ACTCTTTTTCCCCGACGACAA 59.861 47.619 0.00 0.00 0.00 3.18
2348 2488 0.754472 ACTCTTTTTCCCCGACGACA 59.246 50.000 0.00 0.00 0.00 4.35
2360 2500 4.619437 TTACGACGCCAAAAACTCTTTT 57.381 36.364 0.00 0.00 35.02 2.27
2572 2712 0.540597 GAAGCCCTGTTCCCAAGCTT 60.541 55.000 0.00 0.00 40.86 3.74
2624 2764 0.179215 CTCAAGTTTGCGGCGACATC 60.179 55.000 12.98 5.14 0.00 3.06
2630 2770 0.169009 GATGTCCTCAAGTTTGCGGC 59.831 55.000 0.00 0.00 33.15 6.53
2713 2858 9.950496 AATCAAGAGTAACTCATCAAAGTACAT 57.050 29.630 0.00 0.00 32.06 2.29
2768 2913 6.862711 AGCACTAGAAACAAAAGACCTAAC 57.137 37.500 0.00 0.00 0.00 2.34
2777 2922 6.377146 AGGAACTTCAAAGCACTAGAAACAAA 59.623 34.615 0.00 0.00 27.25 2.83
2869 3015 1.312815 GCCTAGGCACAATTAGCTGG 58.687 55.000 29.33 0.00 41.49 4.85
2898 3044 5.733676 AGAATGGTTTCAAACTTTGCACTT 58.266 33.333 0.00 0.00 34.08 3.16
2899 3045 5.127682 AGAGAATGGTTTCAAACTTTGCACT 59.872 36.000 0.00 0.00 34.08 4.40
2938 3084 6.950545 CAGGATGTTAAGAAAACGTACACAA 58.049 36.000 0.00 0.00 0.00 3.33
2963 3109 3.857157 AGCTCAGTTTTAGGGAACACA 57.143 42.857 0.00 0.00 31.94 3.72
2994 3140 7.283127 TGGAACATTCAGATAAAATAGACCTGC 59.717 37.037 0.00 0.00 0.00 4.85
3027 3173 4.097286 GCCAAGACACAAAGTAAAGTTCCA 59.903 41.667 0.00 0.00 0.00 3.53
3090 3236 3.781079 ACACATTCCGCATAATTGGTG 57.219 42.857 0.00 0.00 0.00 4.17
3101 3247 2.434336 TCCCCATTCTCTACACATTCCG 59.566 50.000 0.00 0.00 0.00 4.30
3102 3248 3.199946 TGTCCCCATTCTCTACACATTCC 59.800 47.826 0.00 0.00 0.00 3.01
3320 3475 5.416639 TGAGAAGGCAAGATGTACGTACTAA 59.583 40.000 25.12 7.73 0.00 2.24
3461 3626 5.836347 TCACGAATCATATCTCAACTCCAG 58.164 41.667 0.00 0.00 0.00 3.86
3473 3638 3.119280 TGGAAACGCTCTCACGAATCATA 60.119 43.478 0.00 0.00 36.70 2.15
3536 3704 5.337491 GGGACAAATGTTACAGGAAATGCAT 60.337 40.000 0.00 0.00 0.00 3.96
3577 3745 2.452600 ACAGACTGGAAGGGCAAAAA 57.547 45.000 7.51 0.00 39.30 1.94
3592 3760 4.816126 ACCTAAGGGCATACAGATACAGA 58.184 43.478 0.00 0.00 35.63 3.41
3593 3761 6.665992 TTACCTAAGGGCATACAGATACAG 57.334 41.667 0.00 0.00 35.63 2.74
3594 3762 5.011738 GCTTACCTAAGGGCATACAGATACA 59.988 44.000 0.00 0.00 35.63 2.29
3595 3763 5.011738 TGCTTACCTAAGGGCATACAGATAC 59.988 44.000 0.00 0.00 35.63 2.24
3596 3764 5.152193 TGCTTACCTAAGGGCATACAGATA 58.848 41.667 0.00 0.00 35.63 1.98
3597 3765 3.973973 TGCTTACCTAAGGGCATACAGAT 59.026 43.478 0.00 0.00 35.63 2.90
3598 3766 3.380393 TGCTTACCTAAGGGCATACAGA 58.620 45.455 0.00 0.00 35.63 3.41
3665 3833 3.279434 AGGAACGGAGGCAATATGAAAC 58.721 45.455 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.