Multiple sequence alignment - TraesCS7B01G262600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G262600 chr7B 100.000 3203 0 0 1 3203 483754311 483757513 0.000000e+00 5915.0
1 TraesCS7B01G262600 chr7B 93.750 144 8 1 2743 2886 640260784 640260926 6.960000e-52 215.0
2 TraesCS7B01G262600 chr7D 94.563 2520 70 23 1 2473 461125989 461128488 0.000000e+00 3832.0
3 TraesCS7B01G262600 chr7D 84.099 283 18 9 2946 3203 461128676 461128956 6.860000e-62 248.0
4 TraesCS7B01G262600 chr7D 92.727 110 6 1 2535 2642 461128486 461128595 1.190000e-34 158.0
5 TraesCS7B01G262600 chr7D 100.000 50 0 0 2640 2689 461128678 461128629 3.400000e-15 93.5
6 TraesCS7B01G262600 chr4A 89.589 1825 112 36 726 2482 250524415 250526229 0.000000e+00 2246.0
7 TraesCS7B01G262600 chr4A 80.636 346 29 21 1 321 250519009 250519341 1.920000e-57 233.0
8 TraesCS7B01G262600 chr4A 88.827 179 10 5 2957 3125 250890851 250891029 9.000000e-51 211.0
9 TraesCS7B01G262600 chr4A 92.647 136 9 1 2740 2875 623949302 623949168 9.070000e-46 195.0
10 TraesCS7B01G262600 chr4A 100.000 34 0 0 523 556 250519688 250519721 2.670000e-06 63.9
11 TraesCS7B01G262600 chr4D 88.207 1840 111 49 856 2615 152820091 152818278 0.000000e+00 2098.0
12 TraesCS7B01G262600 chr4D 87.171 304 18 9 294 586 152893984 152893691 3.080000e-85 326.0
13 TraesCS7B01G262600 chr4D 85.427 199 13 8 2915 3099 152818247 152818051 3.260000e-45 193.0
14 TraesCS7B01G262600 chr4D 86.667 90 2 4 177 260 152894074 152893989 1.220000e-14 91.6
15 TraesCS7B01G262600 chr4D 100.000 28 0 0 598 625 152893692 152893665 6.000000e-03 52.8
16 TraesCS7B01G262600 chr1B 94.894 705 33 1 1572 2276 60351477 60352178 0.000000e+00 1099.0
17 TraesCS7B01G262600 chr1B 93.671 632 36 3 950 1577 60345573 60346204 0.000000e+00 942.0
18 TraesCS7B01G262600 chr1B 87.215 219 17 6 2915 3125 60352518 60352733 4.130000e-59 239.0
19 TraesCS7B01G262600 chr1B 92.466 146 10 1 2743 2888 27237906 27238050 1.160000e-49 207.0
20 TraesCS7B01G262600 chr3B 91.034 145 13 0 2742 2886 616891560 616891704 2.520000e-46 196.0
21 TraesCS7B01G262600 chr3B 92.308 52 2 1 3152 3203 40919607 40919656 4.430000e-09 73.1
22 TraesCS7B01G262600 chr6D 90.972 144 12 1 2743 2886 467805934 467806076 3.260000e-45 193.0
23 TraesCS7B01G262600 chr3A 90.972 144 12 1 2743 2886 41614331 41614473 3.260000e-45 193.0
24 TraesCS7B01G262600 chr2A 87.654 162 16 3 2737 2895 50059007 50059167 5.460000e-43 185.0
25 TraesCS7B01G262600 chr2A 94.118 51 3 0 2693 2743 369530443 369530393 9.530000e-11 78.7
26 TraesCS7B01G262600 chr5D 90.071 141 14 0 2742 2882 360747302 360747442 1.960000e-42 183.0
27 TraesCS7B01G262600 chr1D 88.158 152 17 1 2735 2886 334233669 334233819 2.540000e-41 180.0
28 TraesCS7B01G262600 chr4B 92.308 52 4 0 2693 2744 377388802 377388751 1.230000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G262600 chr7B 483754311 483757513 3202 False 5915.000000 5915 100.0000 1 3203 1 chr7B.!!$F1 3202
1 TraesCS7B01G262600 chr7D 461125989 461128956 2967 False 1412.666667 3832 90.4630 1 3203 3 chr7D.!!$F1 3202
2 TraesCS7B01G262600 chr4A 250524415 250526229 1814 False 2246.000000 2246 89.5890 726 2482 1 chr4A.!!$F1 1756
3 TraesCS7B01G262600 chr4D 152818051 152820091 2040 True 1145.500000 2098 86.8170 856 3099 2 chr4D.!!$R1 2243
4 TraesCS7B01G262600 chr1B 60345573 60346204 631 False 942.000000 942 93.6710 950 1577 1 chr1B.!!$F2 627
5 TraesCS7B01G262600 chr1B 60351477 60352733 1256 False 669.000000 1099 91.0545 1572 3125 2 chr1B.!!$F3 1553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.795085 GCAGCTGCACTTACAGTCTG 59.205 55.000 33.36 0.0 41.09 3.51 F
630 641 1.002274 GCCTCTCTTCTCCCCAGGA 59.998 63.158 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1591 1.022735 GCGTTCGGAGACTCCTGATA 58.977 55.0 19.39 6.93 34.32 2.15 R
2397 2511 0.962356 AGCAGGGCCGAACATTTCTG 60.962 55.0 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.600470 AGAAACAACAACGTACCCGA 57.400 45.000 0.00 0.00 37.88 5.14
61 62 2.279517 GCGTCGAGATCGGGCAAT 60.280 61.111 12.21 0.00 40.29 3.56
62 63 1.007734 GCGTCGAGATCGGGCAATA 60.008 57.895 12.21 0.00 40.29 1.90
64 65 1.618861 CGTCGAGATCGGGCAATATC 58.381 55.000 1.91 0.00 40.29 1.63
69 70 3.190744 TCGAGATCGGGCAATATCAGTAC 59.809 47.826 1.91 0.00 40.29 2.73
117 118 0.795085 GCAGCTGCACTTACAGTCTG 59.205 55.000 33.36 0.00 41.09 3.51
169 170 8.366671 ACGCTTTAGAGTTGGATTATGTATTC 57.633 34.615 0.00 0.00 0.00 1.75
204 208 6.712095 TCTCTGTATTTGGATGGATTACATGC 59.288 38.462 0.00 0.00 46.95 4.06
221 231 4.114997 CGGGGGTTGCATTCACGC 62.115 66.667 0.00 0.00 0.00 5.34
222 232 2.988684 GGGGGTTGCATTCACGCA 60.989 61.111 6.43 0.00 41.03 5.24
223 233 2.258286 GGGGTTGCATTCACGCAC 59.742 61.111 6.43 0.00 42.87 5.34
224 234 2.126888 GGGTTGCATTCACGCACG 60.127 61.111 0.00 0.00 42.87 5.34
265 275 4.458989 TCTTTGTGATTTGTCATAGCACCC 59.541 41.667 8.84 0.00 0.00 4.61
276 286 2.104792 TCATAGCACCCATGGACTTAGC 59.895 50.000 15.22 9.41 0.00 3.09
478 489 4.666412 TGTTCCAACCCATCATTAGGAA 57.334 40.909 0.00 0.00 33.10 3.36
479 490 4.599041 TGTTCCAACCCATCATTAGGAAG 58.401 43.478 0.00 0.00 35.96 3.46
480 491 3.951563 TCCAACCCATCATTAGGAAGG 57.048 47.619 0.00 0.00 34.07 3.46
481 492 3.469859 TCCAACCCATCATTAGGAAGGA 58.530 45.455 0.00 0.00 36.45 3.36
522 533 2.959030 ACAAGCGCAGTGGAGATAGATA 59.041 45.455 11.47 0.00 0.00 1.98
523 534 3.005261 ACAAGCGCAGTGGAGATAGATAG 59.995 47.826 11.47 0.00 0.00 2.08
524 535 3.147553 AGCGCAGTGGAGATAGATAGA 57.852 47.619 11.47 0.00 0.00 1.98
527 538 3.768406 CGCAGTGGAGATAGATAGATGC 58.232 50.000 0.00 0.00 0.00 3.91
528 539 3.443329 CGCAGTGGAGATAGATAGATGCT 59.557 47.826 0.00 0.00 0.00 3.79
530 541 4.462132 GCAGTGGAGATAGATAGATGCTCA 59.538 45.833 0.00 0.00 0.00 4.26
531 542 5.127519 GCAGTGGAGATAGATAGATGCTCAT 59.872 44.000 0.00 0.00 0.00 2.90
532 543 6.681120 GCAGTGGAGATAGATAGATGCTCATC 60.681 46.154 1.75 1.75 38.09 2.92
533 544 5.893255 AGTGGAGATAGATAGATGCTCATCC 59.107 44.000 6.27 0.00 38.58 3.51
534 545 5.068987 GTGGAGATAGATAGATGCTCATCCC 59.931 48.000 6.27 0.00 38.58 3.85
535 546 5.207354 GGAGATAGATAGATGCTCATCCCA 58.793 45.833 6.27 0.00 38.58 4.37
536 547 5.660417 GGAGATAGATAGATGCTCATCCCAA 59.340 44.000 6.27 0.00 38.58 4.12
580 591 6.488683 TCGCTTTTCTCCTTCCTGAAAATAAA 59.511 34.615 0.00 0.00 40.11 1.40
581 592 6.582672 CGCTTTTCTCCTTCCTGAAAATAAAC 59.417 38.462 0.00 0.00 40.11 2.01
582 593 6.582672 GCTTTTCTCCTTCCTGAAAATAAACG 59.417 38.462 0.00 0.00 40.11 3.60
583 594 6.569179 TTTCTCCTTCCTGAAAATAAACGG 57.431 37.500 0.00 0.00 30.41 4.44
584 595 4.007659 TCTCCTTCCTGAAAATAAACGGC 58.992 43.478 0.00 0.00 0.00 5.68
630 641 1.002274 GCCTCTCTTCTCCCCAGGA 59.998 63.158 0.00 0.00 0.00 3.86
670 681 3.380320 GGACCAGGACCCGAATTAAAATG 59.620 47.826 0.00 0.00 0.00 2.32
792 803 1.555967 TTAACCTCTGGCAATTGGGC 58.444 50.000 7.72 1.12 43.73 5.36
802 813 3.978193 AATTGGGCCCACCGAGCA 61.978 61.111 28.70 9.60 44.64 4.26
848 861 1.153429 GTATGCAGTCGGGTGGGAC 60.153 63.158 0.00 0.00 37.19 4.46
871 884 4.314440 ACACCTCACCACGCGCAT 62.314 61.111 5.73 0.00 0.00 4.73
933 962 4.430423 CAACGCCGCGCTGAACTC 62.430 66.667 13.88 0.00 0.00 3.01
937 966 3.491652 GCCGCGCTGAACTCCTTC 61.492 66.667 5.56 0.00 0.00 3.46
938 967 2.262915 CCGCGCTGAACTCCTTCT 59.737 61.111 5.56 0.00 0.00 2.85
939 968 1.807573 CCGCGCTGAACTCCTTCTC 60.808 63.158 5.56 0.00 0.00 2.87
940 969 1.807573 CGCGCTGAACTCCTTCTCC 60.808 63.158 5.56 0.00 0.00 3.71
941 970 1.807573 GCGCTGAACTCCTTCTCCG 60.808 63.158 0.00 0.00 0.00 4.63
942 971 1.153745 CGCTGAACTCCTTCTCCGG 60.154 63.158 0.00 0.00 0.00 5.14
944 973 1.975327 CTGAACTCCTTCTCCGGCA 59.025 57.895 0.00 0.00 0.00 5.69
946 975 1.448717 GAACTCCTTCTCCGGCAGC 60.449 63.158 0.00 0.00 0.00 5.25
948 977 3.452786 CTCCTTCTCCGGCAGCGA 61.453 66.667 0.00 0.00 0.00 4.93
1224 1265 4.500116 GTCTCCTGCTCCGGCGAC 62.500 72.222 9.30 0.00 42.25 5.19
1408 1463 4.803426 CGCTCCGCTTCCTCGCTT 62.803 66.667 0.00 0.00 0.00 4.68
1521 1591 3.842923 CCCTCGTCGCTGCTCCAT 61.843 66.667 0.00 0.00 0.00 3.41
1584 1654 2.427245 CGGCGAGATCCCCAAGACT 61.427 63.158 0.00 0.00 0.00 3.24
1788 1858 2.943978 CGAGGTGCCCGGAGAAGTT 61.944 63.158 0.73 0.00 0.00 2.66
2059 2129 2.526450 CTTCCTGACCGGCATCAGCA 62.526 60.000 15.04 0.00 44.12 4.41
2224 2298 5.984695 AGGAAGGAAATGTTTAAGGCTTC 57.015 39.130 1.30 0.00 0.00 3.86
2339 2435 1.223187 CGGCCGTAGTTTGTCAGTTT 58.777 50.000 19.50 0.00 0.00 2.66
2372 2468 2.224523 GGTGGATCTGGTGTGTTTCAGA 60.225 50.000 0.00 0.00 43.15 3.27
2373 2469 2.808543 GTGGATCTGGTGTGTTTCAGAC 59.191 50.000 0.00 0.00 42.00 3.51
2375 2471 3.136443 TGGATCTGGTGTGTTTCAGACTT 59.864 43.478 0.00 0.00 42.00 3.01
2376 2472 4.137543 GGATCTGGTGTGTTTCAGACTTT 58.862 43.478 0.00 0.00 42.00 2.66
2377 2473 4.214332 GGATCTGGTGTGTTTCAGACTTTC 59.786 45.833 0.00 0.00 42.00 2.62
2378 2474 4.214986 TCTGGTGTGTTTCAGACTTTCA 57.785 40.909 0.00 0.00 35.37 2.69
2397 2511 5.734855 TTCAGTAGAGAAACTTTGTGCAC 57.265 39.130 10.75 10.75 0.00 4.57
2429 2545 3.119316 CGGCCCTGCTATGTTATCTCTAG 60.119 52.174 0.00 0.00 0.00 2.43
2483 2611 5.807520 ACAAAGTGCATCTCGTATTGACTAG 59.192 40.000 0.00 0.00 0.00 2.57
2485 2613 6.694877 AAGTGCATCTCGTATTGACTAGTA 57.305 37.500 0.00 0.00 0.00 1.82
2486 2614 6.694877 AGTGCATCTCGTATTGACTAGTAA 57.305 37.500 0.00 0.00 0.00 2.24
2488 2616 7.717568 AGTGCATCTCGTATTGACTAGTAATT 58.282 34.615 0.00 0.00 0.00 1.40
2489 2617 7.649705 AGTGCATCTCGTATTGACTAGTAATTG 59.350 37.037 0.00 0.00 0.00 2.32
2491 2619 8.626526 TGCATCTCGTATTGACTAGTAATTGTA 58.373 33.333 0.00 0.00 0.00 2.41
2492 2620 8.903723 GCATCTCGTATTGACTAGTAATTGTAC 58.096 37.037 0.00 0.00 0.00 2.90
2493 2621 9.395707 CATCTCGTATTGACTAGTAATTGTACC 57.604 37.037 0.00 0.00 0.00 3.34
2494 2622 8.510243 TCTCGTATTGACTAGTAATTGTACCA 57.490 34.615 0.00 0.00 0.00 3.25
2495 2623 8.618677 TCTCGTATTGACTAGTAATTGTACCAG 58.381 37.037 0.00 0.00 0.00 4.00
2496 2624 8.284945 TCGTATTGACTAGTAATTGTACCAGT 57.715 34.615 0.00 0.00 35.23 4.00
2497 2625 8.742777 TCGTATTGACTAGTAATTGTACCAGTT 58.257 33.333 0.00 0.00 33.03 3.16
2498 2626 8.804743 CGTATTGACTAGTAATTGTACCAGTTG 58.195 37.037 0.00 0.00 33.03 3.16
2499 2627 9.649167 GTATTGACTAGTAATTGTACCAGTTGT 57.351 33.333 0.00 0.00 33.03 3.32
2501 2629 8.597662 TTGACTAGTAATTGTACCAGTTGTTC 57.402 34.615 0.00 0.00 33.03 3.18
2502 2630 7.959175 TGACTAGTAATTGTACCAGTTGTTCT 58.041 34.615 0.00 0.00 33.03 3.01
2503 2631 7.870954 TGACTAGTAATTGTACCAGTTGTTCTG 59.129 37.037 0.00 0.00 43.27 3.02
2504 2632 5.941948 AGTAATTGTACCAGTTGTTCTGC 57.058 39.130 0.00 0.00 42.38 4.26
2506 2634 5.825679 AGTAATTGTACCAGTTGTTCTGCAA 59.174 36.000 0.00 0.00 42.38 4.08
2507 2635 5.789643 AATTGTACCAGTTGTTCTGCAAT 57.210 34.783 0.00 0.00 42.38 3.56
2508 2636 5.789643 ATTGTACCAGTTGTTCTGCAATT 57.210 34.783 0.00 0.00 42.38 2.32
2509 2637 6.892658 ATTGTACCAGTTGTTCTGCAATTA 57.107 33.333 0.00 0.00 42.38 1.40
2510 2638 6.892658 TTGTACCAGTTGTTCTGCAATTAT 57.107 33.333 0.00 0.00 42.38 1.28
2512 2640 6.908825 TGTACCAGTTGTTCTGCAATTATTC 58.091 36.000 0.00 0.00 42.38 1.75
2513 2641 6.714810 TGTACCAGTTGTTCTGCAATTATTCT 59.285 34.615 0.00 0.00 42.38 2.40
2514 2642 6.655078 ACCAGTTGTTCTGCAATTATTCTT 57.345 33.333 0.00 0.00 42.38 2.52
2516 2644 7.820648 ACCAGTTGTTCTGCAATTATTCTTAG 58.179 34.615 0.00 0.00 42.38 2.18
2517 2645 7.448469 ACCAGTTGTTCTGCAATTATTCTTAGT 59.552 33.333 0.00 0.00 42.38 2.24
2518 2646 7.752239 CCAGTTGTTCTGCAATTATTCTTAGTG 59.248 37.037 0.00 0.00 42.38 2.74
2519 2647 8.506437 CAGTTGTTCTGCAATTATTCTTAGTGA 58.494 33.333 0.00 0.00 39.55 3.41
2520 2648 9.066892 AGTTGTTCTGCAATTATTCTTAGTGAA 57.933 29.630 0.00 0.00 39.55 3.18
2521 2649 9.118236 GTTGTTCTGCAATTATTCTTAGTGAAC 57.882 33.333 0.00 0.00 39.55 3.18
2522 2650 8.621532 TGTTCTGCAATTATTCTTAGTGAACT 57.378 30.769 0.00 0.00 37.52 3.01
2523 2651 9.719355 TGTTCTGCAATTATTCTTAGTGAACTA 57.281 29.630 0.00 0.00 37.52 2.24
2524 2652 9.974750 GTTCTGCAATTATTCTTAGTGAACTAC 57.025 33.333 0.00 0.00 37.52 2.73
2525 2653 8.407457 TCTGCAATTATTCTTAGTGAACTACG 57.593 34.615 0.00 0.00 37.52 3.51
2526 2654 8.033038 TCTGCAATTATTCTTAGTGAACTACGT 58.967 33.333 0.00 0.00 37.52 3.57
2527 2655 9.297586 CTGCAATTATTCTTAGTGAACTACGTA 57.702 33.333 0.00 0.00 37.52 3.57
2528 2656 9.079833 TGCAATTATTCTTAGTGAACTACGTAC 57.920 33.333 0.00 0.00 37.52 3.67
2529 2657 9.298774 GCAATTATTCTTAGTGAACTACGTACT 57.701 33.333 0.00 0.00 37.52 2.73
2534 2662 7.602517 TTCTTAGTGAACTACGTACTACTCC 57.397 40.000 0.00 0.00 0.00 3.85
2583 2713 3.769739 TTCTGTACATTGCAGGACTGT 57.230 42.857 0.00 0.00 34.89 3.55
2609 2741 6.597672 AGAATAATTCAGCACAATTGGACGTA 59.402 34.615 10.83 0.00 0.00 3.57
2626 2758 0.173255 GTAGGGTGCTACGCGGTTTA 59.827 55.000 12.47 0.00 36.04 2.01
2627 2759 1.113788 TAGGGTGCTACGCGGTTTAT 58.886 50.000 12.47 0.00 36.04 1.40
2633 2765 1.937223 TGCTACGCGGTTTATGAATGG 59.063 47.619 12.47 0.00 0.00 3.16
2636 2768 2.396590 ACGCGGTTTATGAATGGAGT 57.603 45.000 12.47 0.00 0.00 3.85
2680 2812 1.066143 CGAATCCTAGTTGTGCAGGGT 60.066 52.381 0.00 0.00 32.40 4.34
2686 2818 0.179004 TAGTTGTGCAGGGTGGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
2688 2820 0.466555 GTTGTGCAGGGTGGTTGGTA 60.467 55.000 0.00 0.00 0.00 3.25
2689 2821 0.480690 TTGTGCAGGGTGGTTGGTAT 59.519 50.000 0.00 0.00 0.00 2.73
2690 2822 0.480690 TGTGCAGGGTGGTTGGTATT 59.519 50.000 0.00 0.00 0.00 1.89
2691 2823 1.133325 TGTGCAGGGTGGTTGGTATTT 60.133 47.619 0.00 0.00 0.00 1.40
2692 2824 1.544246 GTGCAGGGTGGTTGGTATTTC 59.456 52.381 0.00 0.00 0.00 2.17
2693 2825 1.182667 GCAGGGTGGTTGGTATTTCC 58.817 55.000 0.00 0.00 0.00 3.13
2694 2826 1.272480 GCAGGGTGGTTGGTATTTCCT 60.272 52.381 0.00 0.00 37.07 3.36
2695 2827 2.723273 CAGGGTGGTTGGTATTTCCTC 58.277 52.381 0.00 0.00 37.07 3.71
2696 2828 1.639108 AGGGTGGTTGGTATTTCCTCC 59.361 52.381 0.00 0.00 37.07 4.30
2698 2830 1.003928 GGTGGTTGGTATTTCCTCCGT 59.996 52.381 0.00 0.00 37.07 4.69
2699 2831 2.553685 GGTGGTTGGTATTTCCTCCGTT 60.554 50.000 0.00 0.00 37.07 4.44
2700 2832 2.745821 GTGGTTGGTATTTCCTCCGTTC 59.254 50.000 0.00 0.00 37.07 3.95
2701 2833 2.004733 GGTTGGTATTTCCTCCGTTCG 58.995 52.381 0.00 0.00 37.07 3.95
2702 2834 2.354003 GGTTGGTATTTCCTCCGTTCGA 60.354 50.000 0.00 0.00 37.07 3.71
2703 2835 3.328505 GTTGGTATTTCCTCCGTTCGAA 58.671 45.455 0.00 0.00 37.07 3.71
2705 2837 4.005487 TGGTATTTCCTCCGTTCGAAAA 57.995 40.909 0.00 0.00 37.07 2.29
2706 2838 4.581868 TGGTATTTCCTCCGTTCGAAAAT 58.418 39.130 0.00 0.00 37.07 1.82
2707 2839 4.393680 TGGTATTTCCTCCGTTCGAAAATG 59.606 41.667 0.00 0.00 37.07 2.32
2708 2840 4.393990 GGTATTTCCTCCGTTCGAAAATGT 59.606 41.667 0.00 0.00 32.08 2.71
2709 2841 5.106436 GGTATTTCCTCCGTTCGAAAATGTT 60.106 40.000 0.00 0.00 32.08 2.71
2710 2842 4.904253 TTTCCTCCGTTCGAAAATGTTT 57.096 36.364 0.00 0.00 0.00 2.83
2711 2843 3.889196 TCCTCCGTTCGAAAATGTTTG 57.111 42.857 0.00 0.00 0.00 2.93
2713 2845 3.249080 TCCTCCGTTCGAAAATGTTTGTC 59.751 43.478 0.00 0.00 0.00 3.18
2714 2846 3.002862 CCTCCGTTCGAAAATGTTTGTCA 59.997 43.478 0.00 0.00 0.00 3.58
2715 2847 4.320202 CCTCCGTTCGAAAATGTTTGTCAT 60.320 41.667 0.00 0.00 38.57 3.06
2716 2848 4.778904 TCCGTTCGAAAATGTTTGTCATC 58.221 39.130 0.00 0.00 35.48 2.92
2717 2849 4.273724 TCCGTTCGAAAATGTTTGTCATCA 59.726 37.500 0.00 0.00 35.48 3.07
2721 2853 7.306515 CCGTTCGAAAATGTTTGTCATCAAAAT 60.307 33.333 0.00 0.00 43.78 1.82
2722 2854 7.523542 CGTTCGAAAATGTTTGTCATCAAAATG 59.476 33.333 0.00 0.00 43.78 2.32
2723 2855 7.405469 TCGAAAATGTTTGTCATCAAAATGG 57.595 32.000 0.00 0.00 43.78 3.16
2724 2856 7.205992 TCGAAAATGTTTGTCATCAAAATGGA 58.794 30.769 0.00 0.00 43.78 3.41
2725 2857 7.871973 TCGAAAATGTTTGTCATCAAAATGGAT 59.128 29.630 0.00 0.00 43.78 3.41
2726 2858 9.138062 CGAAAATGTTTGTCATCAAAATGGATA 57.862 29.630 0.00 0.00 43.78 2.59
2732 2864 9.695526 TGTTTGTCATCAAAATGGATAAGAAAG 57.304 29.630 0.00 0.00 43.78 2.62
2733 2865 9.143631 GTTTGTCATCAAAATGGATAAGAAAGG 57.856 33.333 0.00 0.00 43.78 3.11
2734 2866 8.648698 TTGTCATCAAAATGGATAAGAAAGGA 57.351 30.769 0.00 0.00 33.42 3.36
2735 2867 8.827832 TGTCATCAAAATGGATAAGAAAGGAT 57.172 30.769 0.00 0.00 33.42 3.24
2736 2868 8.689061 TGTCATCAAAATGGATAAGAAAGGATG 58.311 33.333 0.00 0.00 33.42 3.51
2737 2869 8.689972 GTCATCAAAATGGATAAGAAAGGATGT 58.310 33.333 0.00 0.00 33.42 3.06
2738 2870 9.919416 TCATCAAAATGGATAAGAAAGGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
2745 2877 7.246171 TGGATAAGAAAGGATGTATCTAGGC 57.754 40.000 0.00 0.00 0.00 3.93
2746 2878 6.213600 TGGATAAGAAAGGATGTATCTAGGCC 59.786 42.308 0.00 0.00 0.00 5.19
2747 2879 4.608948 AAGAAAGGATGTATCTAGGCCG 57.391 45.455 0.00 0.00 0.00 6.13
2748 2880 3.577919 AGAAAGGATGTATCTAGGCCGT 58.422 45.455 0.00 0.00 0.00 5.68
2749 2881 3.322254 AGAAAGGATGTATCTAGGCCGTG 59.678 47.826 0.00 0.00 0.00 4.94
2750 2882 2.383442 AGGATGTATCTAGGCCGTGT 57.617 50.000 0.00 0.00 0.00 4.49
2751 2883 2.679082 AGGATGTATCTAGGCCGTGTT 58.321 47.619 0.00 0.00 0.00 3.32
2752 2884 2.628657 AGGATGTATCTAGGCCGTGTTC 59.371 50.000 0.00 0.00 0.00 3.18
2753 2885 2.607282 GGATGTATCTAGGCCGTGTTCG 60.607 54.545 0.00 0.00 0.00 3.95
2764 2896 3.760693 CGTGTTCGGAATCCATCCT 57.239 52.632 0.00 0.00 46.98 3.24
2765 2897 1.571919 CGTGTTCGGAATCCATCCTC 58.428 55.000 0.00 0.00 46.98 3.71
2766 2898 1.137086 CGTGTTCGGAATCCATCCTCT 59.863 52.381 0.00 0.00 46.98 3.69
2767 2899 2.799917 CGTGTTCGGAATCCATCCTCTC 60.800 54.545 0.00 0.00 46.98 3.20
2768 2900 2.432510 GTGTTCGGAATCCATCCTCTCT 59.567 50.000 0.00 0.00 46.98 3.10
2769 2901 2.432146 TGTTCGGAATCCATCCTCTCTG 59.568 50.000 0.00 0.00 46.98 3.35
2770 2902 1.043816 TCGGAATCCATCCTCTCTGC 58.956 55.000 0.00 0.00 46.98 4.26
2771 2903 1.047002 CGGAATCCATCCTCTCTGCT 58.953 55.000 0.00 0.00 46.98 4.24
2772 2904 1.415659 CGGAATCCATCCTCTCTGCTT 59.584 52.381 0.00 0.00 46.98 3.91
2773 2905 2.547642 CGGAATCCATCCTCTCTGCTTC 60.548 54.545 0.00 0.00 46.98 3.86
2774 2906 2.224499 GGAATCCATCCTCTCTGCTTCC 60.224 54.545 0.00 0.00 45.56 3.46
2775 2907 2.187239 ATCCATCCTCTCTGCTTCCA 57.813 50.000 0.00 0.00 0.00 3.53
2776 2908 1.198713 TCCATCCTCTCTGCTTCCAC 58.801 55.000 0.00 0.00 0.00 4.02
2777 2909 1.202330 CCATCCTCTCTGCTTCCACT 58.798 55.000 0.00 0.00 0.00 4.00
2778 2910 1.138661 CCATCCTCTCTGCTTCCACTC 59.861 57.143 0.00 0.00 0.00 3.51
2779 2911 1.138661 CATCCTCTCTGCTTCCACTCC 59.861 57.143 0.00 0.00 0.00 3.85
2780 2912 0.967887 TCCTCTCTGCTTCCACTCCG 60.968 60.000 0.00 0.00 0.00 4.63
2781 2913 1.153667 CTCTCTGCTTCCACTCCGC 60.154 63.158 0.00 0.00 0.00 5.54
2782 2914 2.507992 CTCTGCTTCCACTCCGCG 60.508 66.667 0.00 0.00 0.00 6.46
2783 2915 3.997064 CTCTGCTTCCACTCCGCGG 62.997 68.421 22.12 22.12 0.00 6.46
2784 2916 4.069232 CTGCTTCCACTCCGCGGA 62.069 66.667 29.03 29.03 31.83 5.54
2785 2917 3.997064 CTGCTTCCACTCCGCGGAG 62.997 68.421 45.26 45.26 46.91 4.63
2793 2925 2.738521 CTCCGCGGAGTTGTGGTG 60.739 66.667 40.77 18.92 40.48 4.17
2794 2926 4.980805 TCCGCGGAGTTGTGGTGC 62.981 66.667 27.28 0.00 40.48 5.01
2795 2927 4.988598 CCGCGGAGTTGTGGTGCT 62.989 66.667 24.07 0.00 34.75 4.40
2796 2928 3.414700 CGCGGAGTTGTGGTGCTC 61.415 66.667 0.00 0.00 0.00 4.26
2797 2929 2.280797 GCGGAGTTGTGGTGCTCA 60.281 61.111 0.00 0.00 33.66 4.26
2798 2930 1.891919 GCGGAGTTGTGGTGCTCAA 60.892 57.895 0.00 0.00 33.66 3.02
2799 2931 1.237285 GCGGAGTTGTGGTGCTCAAT 61.237 55.000 0.00 0.00 33.66 2.57
2800 2932 1.238439 CGGAGTTGTGGTGCTCAATT 58.762 50.000 0.00 0.00 33.66 2.32
2801 2933 1.608590 CGGAGTTGTGGTGCTCAATTT 59.391 47.619 0.00 0.00 33.66 1.82
2802 2934 2.811431 CGGAGTTGTGGTGCTCAATTTA 59.189 45.455 0.00 0.00 33.66 1.40
2803 2935 3.120199 CGGAGTTGTGGTGCTCAATTTAG 60.120 47.826 0.00 0.00 33.66 1.85
2804 2936 3.191371 GGAGTTGTGGTGCTCAATTTAGG 59.809 47.826 0.00 0.00 33.66 2.69
2805 2937 2.558359 AGTTGTGGTGCTCAATTTAGGC 59.442 45.455 0.00 0.00 0.00 3.93
2806 2938 1.544724 TGTGGTGCTCAATTTAGGCC 58.455 50.000 0.00 0.00 0.00 5.19
2807 2939 0.451783 GTGGTGCTCAATTTAGGCCG 59.548 55.000 0.00 0.00 0.00 6.13
2808 2940 1.312371 TGGTGCTCAATTTAGGCCGC 61.312 55.000 0.00 0.00 0.00 6.53
2809 2941 1.032114 GGTGCTCAATTTAGGCCGCT 61.032 55.000 0.00 0.00 0.00 5.52
2810 2942 0.378610 GTGCTCAATTTAGGCCGCTC 59.621 55.000 0.00 0.00 0.00 5.03
2811 2943 0.748005 TGCTCAATTTAGGCCGCTCC 60.748 55.000 0.00 0.00 0.00 4.70
2812 2944 1.776034 GCTCAATTTAGGCCGCTCCG 61.776 60.000 0.00 0.00 40.77 4.63
2813 2945 0.462047 CTCAATTTAGGCCGCTCCGT 60.462 55.000 0.00 0.00 40.77 4.69
2814 2946 0.825410 TCAATTTAGGCCGCTCCGTA 59.175 50.000 0.00 0.00 40.77 4.02
2815 2947 1.207570 TCAATTTAGGCCGCTCCGTAA 59.792 47.619 0.00 0.00 40.77 3.18
2816 2948 2.011222 CAATTTAGGCCGCTCCGTAAA 58.989 47.619 0.00 0.00 40.77 2.01
2817 2949 2.406596 ATTTAGGCCGCTCCGTAAAA 57.593 45.000 0.00 0.00 40.77 1.52
2818 2950 2.181954 TTTAGGCCGCTCCGTAAAAA 57.818 45.000 0.00 0.00 40.77 1.94
2819 2951 2.406596 TTAGGCCGCTCCGTAAAAAT 57.593 45.000 0.00 0.00 40.77 1.82
2820 2952 1.658994 TAGGCCGCTCCGTAAAAATG 58.341 50.000 0.00 0.00 40.77 2.32
2821 2953 0.035820 AGGCCGCTCCGTAAAAATGA 60.036 50.000 0.00 0.00 40.77 2.57
2822 2954 0.377203 GGCCGCTCCGTAAAAATGAG 59.623 55.000 0.00 0.00 0.00 2.90
2823 2955 0.248094 GCCGCTCCGTAAAAATGAGC 60.248 55.000 0.00 0.00 46.21 4.26
2829 2961 3.804873 GCTCCGTAAAAATGAGCTAGAGG 59.195 47.826 0.00 0.00 46.19 3.69
2830 2962 3.793559 TCCGTAAAAATGAGCTAGAGGC 58.206 45.455 0.00 0.00 42.19 4.70
2839 2971 4.200283 GCTAGAGGCTCGTGCGCT 62.200 66.667 9.73 6.09 40.82 5.92
2840 2972 2.492090 CTAGAGGCTCGTGCGCTT 59.508 61.111 9.73 0.00 40.82 4.68
2841 2973 1.587613 CTAGAGGCTCGTGCGCTTC 60.588 63.158 9.73 0.35 40.82 3.86
2842 2974 3.396911 TAGAGGCTCGTGCGCTTCG 62.397 63.158 9.73 14.05 40.52 3.79
2854 2986 3.760035 GCTTCGGAGCGGAGTGGA 61.760 66.667 0.00 0.00 39.48 4.02
2855 2987 2.492090 CTTCGGAGCGGAGTGGAG 59.508 66.667 0.00 0.00 0.00 3.86
2856 2988 3.068691 TTCGGAGCGGAGTGGAGG 61.069 66.667 0.00 0.00 0.00 4.30
2859 2991 3.151022 GGAGCGGAGTGGAGGGAG 61.151 72.222 0.00 0.00 0.00 4.30
2860 2992 3.844090 GAGCGGAGTGGAGGGAGC 61.844 72.222 0.00 0.00 0.00 4.70
2864 2996 3.151022 GGAGTGGAGGGAGCGGAG 61.151 72.222 0.00 0.00 0.00 4.63
2865 2997 2.043852 GAGTGGAGGGAGCGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
2866 2998 2.043450 AGTGGAGGGAGCGGAGAG 60.043 66.667 0.00 0.00 0.00 3.20
2867 2999 3.151022 GTGGAGGGAGCGGAGAGG 61.151 72.222 0.00 0.00 0.00 3.69
2868 3000 3.347590 TGGAGGGAGCGGAGAGGA 61.348 66.667 0.00 0.00 0.00 3.71
2869 3001 2.520741 GGAGGGAGCGGAGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
2870 3002 3.223589 GAGGGAGCGGAGAGGAGC 61.224 72.222 0.00 0.00 0.00 4.70
2871 3003 4.851214 AGGGAGCGGAGAGGAGCC 62.851 72.222 0.00 0.00 0.00 4.70
2878 3010 2.182030 GGAGAGGAGCCGAACACG 59.818 66.667 0.00 0.00 0.00 4.49
2887 3019 4.382788 CCGAACACGGCCCTAAAA 57.617 55.556 0.00 0.00 40.29 1.52
2888 3020 2.862738 CCGAACACGGCCCTAAAAT 58.137 52.632 0.00 0.00 40.29 1.82
2889 3021 0.450184 CCGAACACGGCCCTAAAATG 59.550 55.000 0.00 0.00 40.29 2.32
2890 3022 1.444836 CGAACACGGCCCTAAAATGA 58.555 50.000 0.00 0.00 0.00 2.57
2891 3023 1.129811 CGAACACGGCCCTAAAATGAC 59.870 52.381 0.00 0.00 0.00 3.06
2892 3024 2.156098 GAACACGGCCCTAAAATGACA 58.844 47.619 0.00 0.00 0.00 3.58
2893 3025 2.279935 ACACGGCCCTAAAATGACAA 57.720 45.000 0.00 0.00 0.00 3.18
2894 3026 2.159382 ACACGGCCCTAAAATGACAAG 58.841 47.619 0.00 0.00 0.00 3.16
2895 3027 2.159382 CACGGCCCTAAAATGACAAGT 58.841 47.619 0.00 0.00 0.00 3.16
2896 3028 3.244630 ACACGGCCCTAAAATGACAAGTA 60.245 43.478 0.00 0.00 0.00 2.24
2897 3029 3.945285 CACGGCCCTAAAATGACAAGTAT 59.055 43.478 0.00 0.00 0.00 2.12
2898 3030 4.398044 CACGGCCCTAAAATGACAAGTATT 59.602 41.667 0.00 0.00 0.00 1.89
2899 3031 5.014202 ACGGCCCTAAAATGACAAGTATTT 58.986 37.500 0.00 0.00 0.00 1.40
2900 3032 5.124936 ACGGCCCTAAAATGACAAGTATTTC 59.875 40.000 0.00 0.00 0.00 2.17
2901 3033 5.449999 CGGCCCTAAAATGACAAGTATTTCC 60.450 44.000 0.00 0.00 0.00 3.13
2902 3034 5.449999 GGCCCTAAAATGACAAGTATTTCCG 60.450 44.000 0.00 0.00 0.00 4.30
2903 3035 5.449999 GCCCTAAAATGACAAGTATTTCCGG 60.450 44.000 0.00 0.00 0.00 5.14
2904 3036 5.067283 CCCTAAAATGACAAGTATTTCCGGG 59.933 44.000 0.00 0.00 33.98 5.73
2905 3037 5.883673 CCTAAAATGACAAGTATTTCCGGGA 59.116 40.000 0.00 0.00 0.00 5.14
2906 3038 5.638596 AAAATGACAAGTATTTCCGGGAC 57.361 39.130 0.00 0.00 0.00 4.46
2941 3073 8.456904 AGTTTGGAAGTAGAAAAACGAAAAAC 57.543 30.769 0.00 0.00 37.54 2.43
2943 3075 7.800015 TTGGAAGTAGAAAAACGAAAAACAC 57.200 32.000 0.00 0.00 0.00 3.32
2963 3098 7.426929 AACACACAGATGTATTGTTCTTCTC 57.573 36.000 6.39 0.00 36.72 2.87
3021 3160 4.980434 GCATATTCTCATGTGAACATTGCC 59.020 41.667 19.94 9.86 33.61 4.52
3022 3161 5.450826 GCATATTCTCATGTGAACATTGCCA 60.451 40.000 19.94 0.00 33.61 4.92
3023 3162 4.713824 ATTCTCATGTGAACATTGCCAG 57.286 40.909 12.15 0.00 33.61 4.85
3039 3182 2.497675 TGCCAGGCAAGTTAAACAACAA 59.502 40.909 13.33 0.00 34.76 2.83
3082 3226 4.075682 GTTCTTCCCTCCTTTCTCCTTTG 58.924 47.826 0.00 0.00 0.00 2.77
3115 3278 3.181454 TGGGAAGTGAAGAAGAACTCACC 60.181 47.826 0.00 0.00 33.95 4.02
3130 3299 3.366396 ACTCACCAGAATGATCTACGGT 58.634 45.455 0.00 0.00 39.69 4.83
3140 3309 5.833667 AGAATGATCTACGGTATCTCCAACA 59.166 40.000 0.00 0.00 32.88 3.33
3142 3311 5.258456 TGATCTACGGTATCTCCAACAAC 57.742 43.478 0.00 0.00 35.57 3.32
3145 3314 5.670792 TCTACGGTATCTCCAACAACAAT 57.329 39.130 0.00 0.00 35.57 2.71
3149 3318 5.416947 ACGGTATCTCCAACAACAATCTAC 58.583 41.667 0.00 0.00 35.57 2.59
3179 3348 4.241555 GCATCCCTGTCCGCGGAT 62.242 66.667 33.58 11.70 39.56 4.18
3181 3350 1.006102 CATCCCTGTCCGCGGATAC 60.006 63.158 33.58 21.00 36.72 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.019545 GATCTCGACGCGGCTTCG 61.020 66.667 21.09 21.09 37.85 3.79
39 40 4.554363 CCGATCTCGACGCGGCTT 62.554 66.667 11.76 0.00 43.02 4.35
61 62 8.706322 TTGATCTATGGCTGTTAGTACTGATA 57.294 34.615 5.39 0.00 0.00 2.15
62 63 7.256119 CCTTGATCTATGGCTGTTAGTACTGAT 60.256 40.741 5.39 0.00 0.00 2.90
64 65 6.219473 CCTTGATCTATGGCTGTTAGTACTG 58.781 44.000 5.39 0.00 0.00 2.74
69 70 3.406764 GGCCTTGATCTATGGCTGTTAG 58.593 50.000 18.50 0.00 46.18 2.34
117 118 7.487829 ACAATTTGTAAATGTGAACACACAGAC 59.512 33.333 9.83 8.43 45.63 3.51
136 137 6.236017 TCCAACTCTAAAGCGTACAATTTG 57.764 37.500 0.00 0.00 0.00 2.32
169 170 7.440556 CCATCCAAATACAGAGATCAACAGTAG 59.559 40.741 0.00 0.00 0.00 2.57
172 173 6.351711 TCCATCCAAATACAGAGATCAACAG 58.648 40.000 0.00 0.00 0.00 3.16
204 208 4.114997 GCGTGAATGCAACCCCCG 62.115 66.667 0.00 0.00 34.15 5.73
221 231 0.673333 TGAAGCCATACAGGTGCGTG 60.673 55.000 0.00 0.00 40.61 5.34
222 232 0.391661 CTGAAGCCATACAGGTGCGT 60.392 55.000 0.00 0.00 40.61 5.24
223 233 0.391661 ACTGAAGCCATACAGGTGCG 60.392 55.000 0.00 0.00 40.61 5.34
224 234 1.065854 AGACTGAAGCCATACAGGTGC 60.066 52.381 0.00 0.00 40.61 5.01
265 275 4.320275 GCATGACATGATGCTAAGTCCATG 60.320 45.833 19.76 0.00 44.57 3.66
276 286 2.750712 TCCAAGTGTGCATGACATGATG 59.249 45.455 19.76 7.09 36.78 3.07
478 489 2.900546 TGGTTGTGGTTTGTTTGTTCCT 59.099 40.909 0.00 0.00 0.00 3.36
479 490 3.320673 TGGTTGTGGTTTGTTTGTTCC 57.679 42.857 0.00 0.00 0.00 3.62
480 491 4.511826 TGTTTGGTTGTGGTTTGTTTGTTC 59.488 37.500 0.00 0.00 0.00 3.18
481 492 4.451900 TGTTTGGTTGTGGTTTGTTTGTT 58.548 34.783 0.00 0.00 0.00 2.83
522 533 2.307768 CAGCATTTGGGATGAGCATCT 58.692 47.619 10.04 0.00 37.92 2.90
523 534 2.029623 ACAGCATTTGGGATGAGCATC 58.970 47.619 1.86 1.86 37.11 3.91
524 535 1.754803 CACAGCATTTGGGATGAGCAT 59.245 47.619 0.00 0.00 28.76 3.79
527 538 0.458669 GGCACAGCATTTGGGATGAG 59.541 55.000 0.00 0.00 28.76 2.90
528 539 0.251698 TGGCACAGCATTTGGGATGA 60.252 50.000 0.00 0.00 28.76 2.92
530 541 1.350071 TTTGGCACAGCATTTGGGAT 58.650 45.000 0.00 0.00 42.39 3.85
531 542 1.275856 GATTTGGCACAGCATTTGGGA 59.724 47.619 0.00 0.00 42.39 4.37
532 543 1.676615 GGATTTGGCACAGCATTTGGG 60.677 52.381 0.00 0.00 42.39 4.12
533 544 1.276989 AGGATTTGGCACAGCATTTGG 59.723 47.619 0.00 0.00 42.39 3.28
534 545 2.232941 AGAGGATTTGGCACAGCATTTG 59.767 45.455 0.00 0.00 42.39 2.32
535 546 2.494870 GAGAGGATTTGGCACAGCATTT 59.505 45.455 0.00 0.00 42.39 2.32
536 547 2.097825 GAGAGGATTTGGCACAGCATT 58.902 47.619 0.00 0.00 42.39 3.56
580 591 2.369633 TGAGAGGATGCCATGCCGT 61.370 57.895 0.00 0.00 0.00 5.68
581 592 1.890979 GTGAGAGGATGCCATGCCG 60.891 63.158 0.00 0.00 0.00 5.69
582 593 1.527844 GGTGAGAGGATGCCATGCC 60.528 63.158 0.00 0.00 0.00 4.40
583 594 0.106819 AAGGTGAGAGGATGCCATGC 60.107 55.000 0.00 0.00 0.00 4.06
584 595 2.426024 CAAAAGGTGAGAGGATGCCATG 59.574 50.000 0.00 0.00 0.00 3.66
630 641 3.350833 GTCCTGATGATTGTCCAGCTTT 58.649 45.455 0.00 0.00 0.00 3.51
670 681 4.757149 AGTGAATAGCAAGAGAACAACCAC 59.243 41.667 0.00 0.00 0.00 4.16
759 770 3.506067 AGAGGTTAATTTTTGGAGTGCGG 59.494 43.478 0.00 0.00 0.00 5.69
768 779 5.559770 CCCAATTGCCAGAGGTTAATTTTT 58.440 37.500 0.00 0.00 0.00 1.94
866 879 0.029834 CTGCCTTGATAACCATGCGC 59.970 55.000 0.00 0.00 0.00 6.09
871 884 3.882131 GGCTCTGCCTTGATAACCA 57.118 52.632 0.73 0.00 46.69 3.67
932 961 3.760035 GTCGCTGCCGGAGAAGGA 61.760 66.667 5.05 0.00 34.56 3.36
941 970 1.740296 TAAGGAAAGCGTCGCTGCC 60.740 57.895 22.50 23.67 39.62 4.85
942 971 1.014564 AGTAAGGAAAGCGTCGCTGC 61.015 55.000 22.50 15.73 39.62 5.25
944 973 0.601558 TCAGTAAGGAAAGCGTCGCT 59.398 50.000 15.47 15.47 42.56 4.93
946 975 3.546670 GTGTATCAGTAAGGAAAGCGTCG 59.453 47.826 0.00 0.00 0.00 5.12
948 977 3.259876 TGGTGTATCAGTAAGGAAAGCGT 59.740 43.478 0.00 0.00 0.00 5.07
1028 1069 2.568612 CGAGGAGCAGCAAGACGA 59.431 61.111 0.00 0.00 0.00 4.20
1408 1463 1.909302 GGAGATGAGGTTCCCAGACAA 59.091 52.381 0.00 0.00 0.00 3.18
1521 1591 1.022735 GCGTTCGGAGACTCCTGATA 58.977 55.000 19.39 6.93 34.32 2.15
1584 1654 3.858868 GACCAGCGGCGAACTCACA 62.859 63.158 12.98 0.00 0.00 3.58
2078 2148 3.118454 GTGCACATACCGCTGCGT 61.118 61.111 21.59 11.45 36.08 5.24
2224 2298 1.364269 TACCCACTAAACCACCCCAG 58.636 55.000 0.00 0.00 0.00 4.45
2339 2435 4.534500 ACCAGATCCACCTTACATGTGTAA 59.466 41.667 9.11 5.57 38.10 2.41
2373 2469 6.183360 TGTGCACAAAGTTTCTCTACTGAAAG 60.183 38.462 19.28 0.00 36.72 2.62
2375 2471 5.182487 TGTGCACAAAGTTTCTCTACTGAA 58.818 37.500 19.28 0.00 0.00 3.02
2376 2472 4.765273 TGTGCACAAAGTTTCTCTACTGA 58.235 39.130 19.28 0.00 0.00 3.41
2377 2473 4.811024 TCTGTGCACAAAGTTTCTCTACTG 59.189 41.667 21.98 3.77 0.00 2.74
2378 2474 5.023533 TCTGTGCACAAAGTTTCTCTACT 57.976 39.130 21.98 0.00 0.00 2.57
2397 2511 0.962356 AGCAGGGCCGAACATTTCTG 60.962 55.000 0.00 0.00 0.00 3.02
2429 2545 3.670055 CGAACCATTGAGCAACAAATCAC 59.330 43.478 0.86 0.00 42.03 3.06
2483 2611 5.682943 TGCAGAACAACTGGTACAATTAC 57.317 39.130 0.00 0.00 45.82 1.89
2485 2613 5.789643 ATTGCAGAACAACTGGTACAATT 57.210 34.783 0.00 0.00 45.82 2.32
2486 2614 5.789643 AATTGCAGAACAACTGGTACAAT 57.210 34.783 0.00 0.00 45.82 2.71
2488 2616 6.714810 AGAATAATTGCAGAACAACTGGTACA 59.285 34.615 0.00 0.00 45.82 2.90
2489 2617 7.145932 AGAATAATTGCAGAACAACTGGTAC 57.854 36.000 0.00 0.00 45.82 3.34
2491 2619 6.655078 AAGAATAATTGCAGAACAACTGGT 57.345 33.333 0.00 0.00 45.82 4.00
2492 2620 7.752239 CACTAAGAATAATTGCAGAACAACTGG 59.248 37.037 0.00 0.00 45.82 4.00
2494 2622 8.621532 TCACTAAGAATAATTGCAGAACAACT 57.378 30.769 0.00 0.00 42.27 3.16
2495 2623 9.118236 GTTCACTAAGAATAATTGCAGAACAAC 57.882 33.333 0.00 0.00 38.81 3.32
2496 2624 9.066892 AGTTCACTAAGAATAATTGCAGAACAA 57.933 29.630 0.00 0.00 39.72 2.83
2497 2625 8.621532 AGTTCACTAAGAATAATTGCAGAACA 57.378 30.769 0.00 0.00 38.76 3.18
2498 2626 9.974750 GTAGTTCACTAAGAATAATTGCAGAAC 57.025 33.333 0.00 0.00 38.76 3.01
2499 2627 8.869897 CGTAGTTCACTAAGAATAATTGCAGAA 58.130 33.333 0.00 0.00 38.76 3.02
2501 2629 8.186178 ACGTAGTTCACTAAGAATAATTGCAG 57.814 34.615 6.88 0.00 37.78 4.41
2502 2630 9.079833 GTACGTAGTTCACTAAGAATAATTGCA 57.920 33.333 6.88 0.00 37.78 4.08
2503 2631 9.298774 AGTACGTAGTTCACTAAGAATAATTGC 57.701 33.333 6.88 0.00 37.78 3.56
2508 2636 9.319143 GGAGTAGTACGTAGTTCACTAAGAATA 57.681 37.037 8.48 0.00 37.78 1.75
2509 2637 8.046107 AGGAGTAGTACGTAGTTCACTAAGAAT 58.954 37.037 8.48 0.00 37.78 2.40
2510 2638 7.390027 AGGAGTAGTACGTAGTTCACTAAGAA 58.610 38.462 8.48 0.00 37.78 2.52
2512 2640 7.010367 CAGAGGAGTAGTACGTAGTTCACTAAG 59.990 44.444 8.48 0.00 37.78 2.18
2513 2641 6.815641 CAGAGGAGTAGTACGTAGTTCACTAA 59.184 42.308 8.48 0.00 37.78 2.24
2514 2642 6.336566 CAGAGGAGTAGTACGTAGTTCACTA 58.663 44.000 8.48 0.00 37.78 2.74
2516 2644 4.201802 GCAGAGGAGTAGTACGTAGTTCAC 60.202 50.000 8.48 1.62 37.78 3.18
2517 2645 3.937706 GCAGAGGAGTAGTACGTAGTTCA 59.062 47.826 8.48 0.00 37.78 3.18
2518 2646 3.937706 TGCAGAGGAGTAGTACGTAGTTC 59.062 47.826 8.48 3.39 37.78 3.01
2519 2647 3.947868 TGCAGAGGAGTAGTACGTAGTT 58.052 45.455 8.48 0.00 37.78 2.24
2521 2649 5.502153 AATTGCAGAGGAGTAGTACGTAG 57.498 43.478 0.00 0.00 0.00 3.51
2522 2650 5.448225 CGAAATTGCAGAGGAGTAGTACGTA 60.448 44.000 0.00 0.00 0.00 3.57
2523 2651 4.674623 CGAAATTGCAGAGGAGTAGTACGT 60.675 45.833 0.00 0.00 0.00 3.57
2524 2652 3.791887 CGAAATTGCAGAGGAGTAGTACG 59.208 47.826 0.00 0.00 0.00 3.67
2525 2653 4.995124 TCGAAATTGCAGAGGAGTAGTAC 58.005 43.478 0.00 0.00 0.00 2.73
2526 2654 5.854010 ATCGAAATTGCAGAGGAGTAGTA 57.146 39.130 0.00 0.00 0.00 1.82
2527 2655 4.744795 ATCGAAATTGCAGAGGAGTAGT 57.255 40.909 0.00 0.00 0.00 2.73
2528 2656 4.677378 CGTATCGAAATTGCAGAGGAGTAG 59.323 45.833 0.00 0.00 0.00 2.57
2529 2657 4.499188 CCGTATCGAAATTGCAGAGGAGTA 60.499 45.833 0.00 0.00 0.00 2.59
2530 2658 3.448686 CGTATCGAAATTGCAGAGGAGT 58.551 45.455 0.00 0.00 0.00 3.85
2531 2659 2.797156 CCGTATCGAAATTGCAGAGGAG 59.203 50.000 0.00 0.00 0.00 3.69
2532 2660 2.429250 TCCGTATCGAAATTGCAGAGGA 59.571 45.455 0.00 0.00 0.00 3.71
2534 2662 2.797156 CCTCCGTATCGAAATTGCAGAG 59.203 50.000 0.00 0.00 0.00 3.35
2583 2713 6.597672 ACGTCCAATTGTGCTGAATTATTCTA 59.402 34.615 4.43 0.00 0.00 2.10
2626 2758 4.666512 AGCAAACCAGTTACTCCATTCAT 58.333 39.130 0.00 0.00 0.00 2.57
2627 2759 4.098914 AGCAAACCAGTTACTCCATTCA 57.901 40.909 0.00 0.00 0.00 2.57
2633 2765 5.240844 ACCAAATGTAGCAAACCAGTTACTC 59.759 40.000 0.00 0.00 0.00 2.59
2636 2768 5.381757 AGACCAAATGTAGCAAACCAGTTA 58.618 37.500 0.00 0.00 0.00 2.24
2680 2812 2.613474 CGAACGGAGGAAATACCAACCA 60.613 50.000 0.00 0.00 42.04 3.67
2686 2818 5.541098 ACATTTTCGAACGGAGGAAATAC 57.459 39.130 0.00 0.00 32.67 1.89
2688 2820 5.219633 CAAACATTTTCGAACGGAGGAAAT 58.780 37.500 0.00 0.00 32.67 2.17
2689 2821 4.096682 ACAAACATTTTCGAACGGAGGAAA 59.903 37.500 0.00 0.00 0.00 3.13
2690 2822 3.628487 ACAAACATTTTCGAACGGAGGAA 59.372 39.130 0.00 0.00 0.00 3.36
2691 2823 3.207778 ACAAACATTTTCGAACGGAGGA 58.792 40.909 0.00 0.00 0.00 3.71
2692 2824 3.002862 TGACAAACATTTTCGAACGGAGG 59.997 43.478 0.00 0.00 0.00 4.30
2693 2825 4.203950 TGACAAACATTTTCGAACGGAG 57.796 40.909 0.00 0.00 0.00 4.63
2694 2826 4.273724 TGATGACAAACATTTTCGAACGGA 59.726 37.500 0.00 0.00 39.56 4.69
2695 2827 4.532276 TGATGACAAACATTTTCGAACGG 58.468 39.130 0.00 0.00 39.56 4.44
2696 2828 6.489469 TTTGATGACAAACATTTTCGAACG 57.511 33.333 0.00 0.00 40.47 3.95
2698 2830 7.708322 TCCATTTTGATGACAAACATTTTCGAA 59.292 29.630 0.00 0.00 44.22 3.71
2699 2831 7.205992 TCCATTTTGATGACAAACATTTTCGA 58.794 30.769 0.00 0.00 44.22 3.71
2700 2832 7.405469 TCCATTTTGATGACAAACATTTTCG 57.595 32.000 0.00 0.00 44.22 3.46
2706 2838 9.695526 CTTTCTTATCCATTTTGATGACAAACA 57.304 29.630 0.00 0.00 44.22 2.83
2707 2839 9.143631 CCTTTCTTATCCATTTTGATGACAAAC 57.856 33.333 0.00 0.00 44.22 2.93
2708 2840 9.087871 TCCTTTCTTATCCATTTTGATGACAAA 57.912 29.630 0.00 0.00 43.10 2.83
2709 2841 8.648698 TCCTTTCTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
2710 2842 8.689061 CATCCTTTCTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 0.00 3.58
2711 2843 8.689972 ACATCCTTTCTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 32.39 3.06
2721 2853 6.213600 GGCCTAGATACATCCTTTCTTATCCA 59.786 42.308 0.00 0.00 0.00 3.41
2722 2854 6.628398 CGGCCTAGATACATCCTTTCTTATCC 60.628 46.154 0.00 0.00 0.00 2.59
2723 2855 6.071278 ACGGCCTAGATACATCCTTTCTTATC 60.071 42.308 0.00 0.00 0.00 1.75
2724 2856 5.780793 ACGGCCTAGATACATCCTTTCTTAT 59.219 40.000 0.00 0.00 0.00 1.73
2725 2857 5.010719 CACGGCCTAGATACATCCTTTCTTA 59.989 44.000 0.00 0.00 0.00 2.10
2726 2858 3.967987 ACGGCCTAGATACATCCTTTCTT 59.032 43.478 0.00 0.00 0.00 2.52
2727 2859 3.322254 CACGGCCTAGATACATCCTTTCT 59.678 47.826 0.00 0.00 0.00 2.52
2728 2860 3.069729 ACACGGCCTAGATACATCCTTTC 59.930 47.826 0.00 0.00 0.00 2.62
2729 2861 3.039011 ACACGGCCTAGATACATCCTTT 58.961 45.455 0.00 0.00 0.00 3.11
2730 2862 2.679082 ACACGGCCTAGATACATCCTT 58.321 47.619 0.00 0.00 0.00 3.36
2731 2863 2.383442 ACACGGCCTAGATACATCCT 57.617 50.000 0.00 0.00 0.00 3.24
2732 2864 2.607282 CGAACACGGCCTAGATACATCC 60.607 54.545 0.00 0.00 0.00 3.51
2733 2865 2.607282 CCGAACACGGCCTAGATACATC 60.607 54.545 0.00 0.00 40.29 3.06
2734 2866 1.340248 CCGAACACGGCCTAGATACAT 59.660 52.381 0.00 0.00 40.29 2.29
2735 2867 0.742505 CCGAACACGGCCTAGATACA 59.257 55.000 0.00 0.00 40.29 2.29
2736 2868 1.027357 TCCGAACACGGCCTAGATAC 58.973 55.000 0.00 0.00 45.52 2.24
2737 2869 1.766494 TTCCGAACACGGCCTAGATA 58.234 50.000 0.00 0.00 45.52 1.98
2738 2870 1.068741 GATTCCGAACACGGCCTAGAT 59.931 52.381 0.00 0.00 45.52 1.98
2739 2871 0.458669 GATTCCGAACACGGCCTAGA 59.541 55.000 0.00 0.00 45.52 2.43
2740 2872 0.529992 GGATTCCGAACACGGCCTAG 60.530 60.000 0.00 0.00 45.52 3.02
2741 2873 1.259142 TGGATTCCGAACACGGCCTA 61.259 55.000 0.00 0.00 45.52 3.93
2742 2874 1.910580 ATGGATTCCGAACACGGCCT 61.911 55.000 0.00 0.00 45.52 5.19
2743 2875 1.436983 GATGGATTCCGAACACGGCC 61.437 60.000 3.67 0.00 45.52 6.13
2744 2876 1.436983 GGATGGATTCCGAACACGGC 61.437 60.000 3.67 0.00 45.52 5.68
2753 2885 2.224499 GGAAGCAGAGAGGATGGATTCC 60.224 54.545 0.00 0.00 45.85 3.01
2754 2886 2.437281 TGGAAGCAGAGAGGATGGATTC 59.563 50.000 0.00 0.00 0.00 2.52
2755 2887 2.172293 GTGGAAGCAGAGAGGATGGATT 59.828 50.000 0.00 0.00 0.00 3.01
2756 2888 1.767681 GTGGAAGCAGAGAGGATGGAT 59.232 52.381 0.00 0.00 0.00 3.41
2757 2889 1.198713 GTGGAAGCAGAGAGGATGGA 58.801 55.000 0.00 0.00 0.00 3.41
2758 2890 1.138661 GAGTGGAAGCAGAGAGGATGG 59.861 57.143 0.00 0.00 0.00 3.51
2759 2891 1.138661 GGAGTGGAAGCAGAGAGGATG 59.861 57.143 0.00 0.00 0.00 3.51
2760 2892 1.494960 GGAGTGGAAGCAGAGAGGAT 58.505 55.000 0.00 0.00 0.00 3.24
2761 2893 0.967887 CGGAGTGGAAGCAGAGAGGA 60.968 60.000 0.00 0.00 0.00 3.71
2762 2894 1.515020 CGGAGTGGAAGCAGAGAGG 59.485 63.158 0.00 0.00 0.00 3.69
2763 2895 1.153667 GCGGAGTGGAAGCAGAGAG 60.154 63.158 0.00 0.00 0.00 3.20
2764 2896 2.973899 GCGGAGTGGAAGCAGAGA 59.026 61.111 0.00 0.00 0.00 3.10
2765 2897 2.507992 CGCGGAGTGGAAGCAGAG 60.508 66.667 0.00 0.00 0.00 3.35
2776 2908 2.738521 CACCACAACTCCGCGGAG 60.739 66.667 45.26 45.26 46.91 4.63
2777 2909 4.980805 GCACCACAACTCCGCGGA 62.981 66.667 29.03 29.03 0.00 5.54
2778 2910 4.988598 AGCACCACAACTCCGCGG 62.989 66.667 22.12 22.12 0.00 6.46
2779 2911 3.414700 GAGCACCACAACTCCGCG 61.415 66.667 0.00 0.00 0.00 6.46
2780 2912 1.237285 ATTGAGCACCACAACTCCGC 61.237 55.000 0.00 0.00 31.65 5.54
2781 2913 1.238439 AATTGAGCACCACAACTCCG 58.762 50.000 0.00 0.00 31.65 4.63
2782 2914 3.191371 CCTAAATTGAGCACCACAACTCC 59.809 47.826 0.00 0.00 31.65 3.85
2783 2915 3.366374 GCCTAAATTGAGCACCACAACTC 60.366 47.826 0.00 0.00 0.00 3.01
2784 2916 2.558359 GCCTAAATTGAGCACCACAACT 59.442 45.455 0.00 0.00 0.00 3.16
2785 2917 2.352715 GGCCTAAATTGAGCACCACAAC 60.353 50.000 0.00 0.00 0.00 3.32
2786 2918 1.892474 GGCCTAAATTGAGCACCACAA 59.108 47.619 0.00 0.00 0.00 3.33
2787 2919 1.544724 GGCCTAAATTGAGCACCACA 58.455 50.000 0.00 0.00 0.00 4.17
2788 2920 0.451783 CGGCCTAAATTGAGCACCAC 59.548 55.000 0.00 0.00 0.00 4.16
2789 2921 1.312371 GCGGCCTAAATTGAGCACCA 61.312 55.000 0.00 0.00 0.00 4.17
2790 2922 1.032114 AGCGGCCTAAATTGAGCACC 61.032 55.000 0.00 0.00 0.00 5.01
2791 2923 0.378610 GAGCGGCCTAAATTGAGCAC 59.621 55.000 0.00 0.00 0.00 4.40
2792 2924 0.748005 GGAGCGGCCTAAATTGAGCA 60.748 55.000 0.00 0.00 0.00 4.26
2793 2925 1.776034 CGGAGCGGCCTAAATTGAGC 61.776 60.000 0.00 0.00 0.00 4.26
2794 2926 0.462047 ACGGAGCGGCCTAAATTGAG 60.462 55.000 0.00 0.00 0.00 3.02
2795 2927 0.825410 TACGGAGCGGCCTAAATTGA 59.175 50.000 0.00 0.00 0.00 2.57
2796 2928 1.658994 TTACGGAGCGGCCTAAATTG 58.341 50.000 0.00 0.00 0.00 2.32
2797 2929 2.406596 TTTACGGAGCGGCCTAAATT 57.593 45.000 0.00 0.00 0.00 1.82
2798 2930 2.406596 TTTTACGGAGCGGCCTAAAT 57.593 45.000 0.00 0.00 0.00 1.40
2799 2931 2.181954 TTTTTACGGAGCGGCCTAAA 57.818 45.000 0.00 0.00 0.00 1.85
2800 2932 2.011222 CATTTTTACGGAGCGGCCTAA 58.989 47.619 0.00 0.00 0.00 2.69
2801 2933 1.207570 TCATTTTTACGGAGCGGCCTA 59.792 47.619 0.00 0.00 0.00 3.93
2802 2934 0.035820 TCATTTTTACGGAGCGGCCT 60.036 50.000 0.00 0.00 0.00 5.19
2803 2935 0.377203 CTCATTTTTACGGAGCGGCC 59.623 55.000 0.00 0.00 0.00 6.13
2804 2936 0.248094 GCTCATTTTTACGGAGCGGC 60.248 55.000 0.00 0.00 43.83 6.53
2805 2937 3.897819 GCTCATTTTTACGGAGCGG 57.102 52.632 0.00 0.00 43.83 5.52
2808 2940 3.804873 GCCTCTAGCTCATTTTTACGGAG 59.195 47.826 0.00 0.00 38.99 4.63
2809 2941 3.793559 GCCTCTAGCTCATTTTTACGGA 58.206 45.455 0.00 0.00 38.99 4.69
2822 2954 3.708220 AAGCGCACGAGCCTCTAGC 62.708 63.158 11.47 0.00 44.25 3.42
2823 2955 1.587613 GAAGCGCACGAGCCTCTAG 60.588 63.158 11.47 0.00 37.52 2.43
2824 2956 2.490217 GAAGCGCACGAGCCTCTA 59.510 61.111 11.47 0.00 37.52 2.43
2825 2957 4.785512 CGAAGCGCACGAGCCTCT 62.786 66.667 19.17 0.00 37.52 3.69
2837 2969 3.708220 CTCCACTCCGCTCCGAAGC 62.708 68.421 0.00 0.00 45.56 3.86
2838 2970 2.492090 CTCCACTCCGCTCCGAAG 59.508 66.667 0.00 0.00 0.00 3.79
2839 2971 3.068691 CCTCCACTCCGCTCCGAA 61.069 66.667 0.00 0.00 0.00 4.30
2842 2974 3.151022 CTCCCTCCACTCCGCTCC 61.151 72.222 0.00 0.00 0.00 4.70
2843 2975 3.844090 GCTCCCTCCACTCCGCTC 61.844 72.222 0.00 0.00 0.00 5.03
2847 2979 3.151022 CTCCGCTCCCTCCACTCC 61.151 72.222 0.00 0.00 0.00 3.85
2848 2980 2.043852 TCTCCGCTCCCTCCACTC 60.044 66.667 0.00 0.00 0.00 3.51
2849 2981 2.043450 CTCTCCGCTCCCTCCACT 60.043 66.667 0.00 0.00 0.00 4.00
2850 2982 3.151022 CCTCTCCGCTCCCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
2851 2983 3.347590 TCCTCTCCGCTCCCTCCA 61.348 66.667 0.00 0.00 0.00 3.86
2852 2984 2.520741 CTCCTCTCCGCTCCCTCC 60.521 72.222 0.00 0.00 0.00 4.30
2853 2985 3.223589 GCTCCTCTCCGCTCCCTC 61.224 72.222 0.00 0.00 0.00 4.30
2854 2986 4.851214 GGCTCCTCTCCGCTCCCT 62.851 72.222 0.00 0.00 0.00 4.20
2857 2989 3.141488 TTCGGCTCCTCTCCGCTC 61.141 66.667 0.00 0.00 46.05 5.03
2858 2990 3.453679 GTTCGGCTCCTCTCCGCT 61.454 66.667 0.00 0.00 46.05 5.52
2859 2991 3.760035 TGTTCGGCTCCTCTCCGC 61.760 66.667 0.00 0.00 46.05 5.54
2861 2993 2.182030 CGTGTTCGGCTCCTCTCC 59.818 66.667 0.00 0.00 0.00 3.71
2871 3003 1.129811 GTCATTTTAGGGCCGTGTTCG 59.870 52.381 8.57 0.00 0.00 3.95
2872 3004 2.156098 TGTCATTTTAGGGCCGTGTTC 58.844 47.619 8.57 0.00 0.00 3.18
2873 3005 2.279935 TGTCATTTTAGGGCCGTGTT 57.720 45.000 8.57 0.00 0.00 3.32
2874 3006 2.159382 CTTGTCATTTTAGGGCCGTGT 58.841 47.619 8.57 0.00 0.00 4.49
2875 3007 2.159382 ACTTGTCATTTTAGGGCCGTG 58.841 47.619 8.57 0.00 0.00 4.94
2876 3008 2.579410 ACTTGTCATTTTAGGGCCGT 57.421 45.000 2.24 2.24 0.00 5.68
2877 3009 5.449999 GGAAATACTTGTCATTTTAGGGCCG 60.450 44.000 0.00 0.00 0.00 6.13
2878 3010 5.449999 CGGAAATACTTGTCATTTTAGGGCC 60.450 44.000 0.00 0.00 0.00 5.80
2879 3011 5.449999 CCGGAAATACTTGTCATTTTAGGGC 60.450 44.000 0.00 0.00 0.00 5.19
2880 3012 5.067283 CCCGGAAATACTTGTCATTTTAGGG 59.933 44.000 0.73 0.00 36.71 3.53
2881 3013 5.883673 TCCCGGAAATACTTGTCATTTTAGG 59.116 40.000 0.73 0.00 0.00 2.69
2882 3014 6.456449 CGTCCCGGAAATACTTGTCATTTTAG 60.456 42.308 0.73 0.00 0.00 1.85
2883 3015 5.352016 CGTCCCGGAAATACTTGTCATTTTA 59.648 40.000 0.73 0.00 0.00 1.52
2884 3016 4.155280 CGTCCCGGAAATACTTGTCATTTT 59.845 41.667 0.73 0.00 0.00 1.82
2885 3017 3.687698 CGTCCCGGAAATACTTGTCATTT 59.312 43.478 0.73 0.00 0.00 2.32
2886 3018 3.267483 CGTCCCGGAAATACTTGTCATT 58.733 45.455 0.73 0.00 0.00 2.57
2887 3019 2.901249 CGTCCCGGAAATACTTGTCAT 58.099 47.619 0.73 0.00 0.00 3.06
2888 3020 2.373540 CGTCCCGGAAATACTTGTCA 57.626 50.000 0.73 0.00 0.00 3.58
2901 3033 1.132643 CAAACTACTCTCTCCGTCCCG 59.867 57.143 0.00 0.00 0.00 5.14
2902 3034 1.477295 CCAAACTACTCTCTCCGTCCC 59.523 57.143 0.00 0.00 0.00 4.46
2903 3035 2.444421 TCCAAACTACTCTCTCCGTCC 58.556 52.381 0.00 0.00 0.00 4.79
2904 3036 3.506844 ACTTCCAAACTACTCTCTCCGTC 59.493 47.826 0.00 0.00 0.00 4.79
2905 3037 3.498334 ACTTCCAAACTACTCTCTCCGT 58.502 45.455 0.00 0.00 0.00 4.69
2906 3038 4.942483 TCTACTTCCAAACTACTCTCTCCG 59.058 45.833 0.00 0.00 0.00 4.63
2907 3039 6.837471 TTCTACTTCCAAACTACTCTCTCC 57.163 41.667 0.00 0.00 0.00 3.71
2908 3040 8.980610 GTTTTTCTACTTCCAAACTACTCTCTC 58.019 37.037 0.00 0.00 0.00 3.20
2909 3041 7.652507 CGTTTTTCTACTTCCAAACTACTCTCT 59.347 37.037 0.00 0.00 0.00 3.10
2910 3042 7.650903 TCGTTTTTCTACTTCCAAACTACTCTC 59.349 37.037 0.00 0.00 0.00 3.20
2911 3043 7.495055 TCGTTTTTCTACTTCCAAACTACTCT 58.505 34.615 0.00 0.00 0.00 3.24
2912 3044 7.704789 TCGTTTTTCTACTTCCAAACTACTC 57.295 36.000 0.00 0.00 0.00 2.59
2913 3045 8.496707 TTTCGTTTTTCTACTTCCAAACTACT 57.503 30.769 0.00 0.00 0.00 2.57
2941 3073 8.763049 TTAGAGAAGAACAATACATCTGTGTG 57.237 34.615 0.00 0.00 39.39 3.82
2963 3098 4.272489 TCTGACCCAAGCCATCAAATTAG 58.728 43.478 0.00 0.00 0.00 1.73
3021 3160 5.163663 TGAGAGTTGTTGTTTAACTTGCCTG 60.164 40.000 0.00 0.00 38.42 4.85
3022 3161 4.947388 TGAGAGTTGTTGTTTAACTTGCCT 59.053 37.500 0.00 0.00 38.42 4.75
3023 3162 5.243426 TGAGAGTTGTTGTTTAACTTGCC 57.757 39.130 0.00 0.00 38.42 4.52
3039 3182 5.053978 ACAAGTGAAAAAGGGATGAGAGT 57.946 39.130 0.00 0.00 0.00 3.24
3115 3278 5.966742 TGGAGATACCGTAGATCATTCTG 57.033 43.478 0.00 0.00 42.61 3.02
3156 3325 3.866582 GGACAGGGATGCGGGAGG 61.867 72.222 0.00 0.00 0.00 4.30
3157 3326 4.227134 CGGACAGGGATGCGGGAG 62.227 72.222 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.