Multiple sequence alignment - TraesCS7B01G262000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G262000 chr7B 100.000 5674 0 0 1 5674 482683356 482689029 0.000000e+00 10479.0
1 TraesCS7B01G262000 chr7B 84.277 3180 480 15 878 4052 481857177 481854013 0.000000e+00 3085.0
2 TraesCS7B01G262000 chr7B 83.518 2882 455 15 1178 4052 482078294 482075426 0.000000e+00 2673.0
3 TraesCS7B01G262000 chr7B 83.391 578 85 7 4245 4818 482489616 482490186 5.040000e-145 525.0
4 TraesCS7B01G262000 chr7B 87.616 323 37 1 1203 1525 482664456 482664775 6.940000e-99 372.0
5 TraesCS7B01G262000 chr7B 80.594 438 77 5 4245 4681 481853970 481853540 1.180000e-86 331.0
6 TraesCS7B01G262000 chr7A 95.723 4185 145 14 1 4161 539326997 539322823 0.000000e+00 6706.0
7 TraesCS7B01G262000 chr7A 82.747 2104 349 14 1953 4049 539928023 539930119 0.000000e+00 1862.0
8 TraesCS7B01G262000 chr7A 89.579 950 65 15 4242 5166 539322825 539321885 0.000000e+00 1175.0
9 TraesCS7B01G262000 chr7A 85.757 1011 135 4 907 1917 539926865 539927866 0.000000e+00 1061.0
10 TraesCS7B01G262000 chr7A 84.682 581 78 8 4245 4821 539403431 539402858 2.290000e-158 569.0
11 TraesCS7B01G262000 chr7A 84.483 580 79 8 4245 4821 539446513 539445942 3.840000e-156 562.0
12 TraesCS7B01G262000 chr7A 78.391 435 87 5 4242 4675 539930161 539930589 5.600000e-70 276.0
13 TraesCS7B01G262000 chr7A 82.213 253 35 5 3909 4160 539403676 539403433 5.760000e-50 209.0
14 TraesCS7B01G262000 chr7A 93.182 88 6 0 4160 4247 13666811 13666898 4.610000e-26 130.0
15 TraesCS7B01G262000 chr7A 91.304 92 7 1 4159 4249 173487563 173487654 2.150000e-24 124.0
16 TraesCS7B01G262000 chr7A 91.071 56 3 2 129 184 539368259 539368206 2.190000e-09 75.0
17 TraesCS7B01G262000 chr7D 97.039 3782 107 4 384 4161 460279090 460282870 0.000000e+00 6359.0
18 TraesCS7B01G262000 chr7D 84.489 3159 475 12 898 4052 459752908 459749761 0.000000e+00 3105.0
19 TraesCS7B01G262000 chr7D 83.416 3214 494 28 867 4052 459790384 459787182 0.000000e+00 2946.0
20 TraesCS7B01G262000 chr7D 92.069 580 42 1 4242 4821 460282868 460283443 0.000000e+00 813.0
21 TraesCS7B01G262000 chr7D 89.804 510 29 11 4820 5309 460285984 460286490 2.880000e-177 632.0
22 TraesCS7B01G262000 chr7D 84.828 580 79 5 4245 4821 460110166 460110739 4.930000e-160 575.0
23 TraesCS7B01G262000 chr7D 84.231 520 65 7 1017 1530 460273364 460273872 1.840000e-134 490.0
24 TraesCS7B01G262000 chr7D 89.211 380 12 10 1 363 460278670 460279037 1.120000e-121 448.0
25 TraesCS7B01G262000 chr7D 79.439 428 81 5 4255 4681 459749708 459749287 4.300000e-76 296.0
26 TraesCS7B01G262000 chr7D 77.619 210 18 13 515 718 460114957 460115143 3.620000e-17 100.0
27 TraesCS7B01G262000 chr7D 80.488 123 21 2 5463 5585 552061586 552061467 2.180000e-14 91.6
28 TraesCS7B01G262000 chr7D 97.917 48 1 0 384 431 460279038 460279085 3.640000e-12 84.2
29 TraesCS7B01G262000 chr7D 90.000 60 3 3 126 184 460272504 460272561 2.190000e-09 75.0
30 TraesCS7B01G262000 chr2B 81.965 3033 506 28 1105 4107 784188703 784191724 0.000000e+00 2532.0
31 TraesCS7B01G262000 chr2A 81.693 2977 503 26 1105 4048 764309067 764312034 0.000000e+00 2440.0
32 TraesCS7B01G262000 chr2A 80.555 2741 485 31 1343 4049 764256503 764259229 0.000000e+00 2065.0
33 TraesCS7B01G262000 chr2A 92.885 773 46 4 509 1273 208166413 208167184 0.000000e+00 1114.0
34 TraesCS7B01G262000 chr2D 81.078 2986 507 34 1105 4049 638724248 638727216 0.000000e+00 2331.0
35 TraesCS7B01G262000 chr2D 91.837 98 8 0 4153 4250 548274249 548274152 2.760000e-28 137.0
36 TraesCS7B01G262000 chr3A 93.478 92 6 0 4157 4248 494387953 494387862 2.760000e-28 137.0
37 TraesCS7B01G262000 chr3A 80.000 130 24 1 5463 5592 704647272 704647399 1.680000e-15 95.3
38 TraesCS7B01G262000 chr1B 95.349 86 4 0 4159 4244 497304581 497304496 2.760000e-28 137.0
39 TraesCS7B01G262000 chr6D 84.672 137 19 2 5465 5601 44504538 44504404 9.920000e-28 135.0
40 TraesCS7B01G262000 chr6D 83.803 142 17 5 5461 5601 80295790 80295654 4.610000e-26 130.0
41 TraesCS7B01G262000 chr6D 87.234 94 10 1 5508 5601 44734788 44734697 7.770000e-19 106.0
42 TraesCS7B01G262000 chrUn 90.816 98 9 0 4147 4244 244923909 244923812 1.280000e-26 132.0
43 TraesCS7B01G262000 chrUn 90.816 98 9 0 4147 4244 287095797 287095700 1.280000e-26 132.0
44 TraesCS7B01G262000 chr4B 93.258 89 6 0 4157 4245 273620207 273620119 1.280000e-26 132.0
45 TraesCS7B01G262000 chr4B 93.151 73 5 0 5335 5407 150420985 150420913 2.160000e-19 108.0
46 TraesCS7B01G262000 chr4B 89.062 64 7 0 5333 5396 455976115 455976052 4.710000e-11 80.5
47 TraesCS7B01G262000 chr3B 93.258 89 6 0 4159 4247 690417761 690417849 1.280000e-26 132.0
48 TraesCS7B01G262000 chr1D 82.308 130 20 2 5463 5592 376863461 376863587 6.010000e-20 110.0
49 TraesCS7B01G262000 chr3D 81.061 132 23 1 5463 5594 80479538 80479409 2.800000e-18 104.0
50 TraesCS7B01G262000 chr1A 80.769 130 23 1 5463 5592 480588803 480588930 3.620000e-17 100.0
51 TraesCS7B01G262000 chr6A 90.625 64 6 0 5333 5396 21446156 21446219 1.010000e-12 86.1
52 TraesCS7B01G262000 chr4D 90.625 64 6 0 5333 5396 85265234 85265171 1.010000e-12 86.1
53 TraesCS7B01G262000 chr5A 81.373 102 17 1 5491 5592 18693841 18693940 1.310000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G262000 chr7B 482683356 482689029 5673 False 10479.000000 10479 100.000000 1 5674 1 chr7B.!!$F3 5673
1 TraesCS7B01G262000 chr7B 482075426 482078294 2868 True 2673.000000 2673 83.518000 1178 4052 1 chr7B.!!$R1 2874
2 TraesCS7B01G262000 chr7B 481853540 481857177 3637 True 1708.000000 3085 82.435500 878 4681 2 chr7B.!!$R2 3803
3 TraesCS7B01G262000 chr7B 482489616 482490186 570 False 525.000000 525 83.391000 4245 4818 1 chr7B.!!$F1 573
4 TraesCS7B01G262000 chr7A 539321885 539326997 5112 True 3940.500000 6706 92.651000 1 5166 2 chr7A.!!$R3 5165
5 TraesCS7B01G262000 chr7A 539926865 539930589 3724 False 1066.333333 1862 82.298333 907 4675 3 chr7A.!!$F3 3768
6 TraesCS7B01G262000 chr7A 539445942 539446513 571 True 562.000000 562 84.483000 4245 4821 1 chr7A.!!$R2 576
7 TraesCS7B01G262000 chr7A 539402858 539403676 818 True 389.000000 569 83.447500 3909 4821 2 chr7A.!!$R4 912
8 TraesCS7B01G262000 chr7D 459787182 459790384 3202 True 2946.000000 2946 83.416000 867 4052 1 chr7D.!!$R1 3185
9 TraesCS7B01G262000 chr7D 459749287 459752908 3621 True 1700.500000 3105 81.964000 898 4681 2 chr7D.!!$R3 3783
10 TraesCS7B01G262000 chr7D 460278670 460286490 7820 False 1667.240000 6359 93.208000 1 5309 5 chr7D.!!$F4 5308
11 TraesCS7B01G262000 chr7D 460110166 460110739 573 False 575.000000 575 84.828000 4245 4821 1 chr7D.!!$F1 576
12 TraesCS7B01G262000 chr7D 460272504 460273872 1368 False 282.500000 490 87.115500 126 1530 2 chr7D.!!$F3 1404
13 TraesCS7B01G262000 chr2B 784188703 784191724 3021 False 2532.000000 2532 81.965000 1105 4107 1 chr2B.!!$F1 3002
14 TraesCS7B01G262000 chr2A 764309067 764312034 2967 False 2440.000000 2440 81.693000 1105 4048 1 chr2A.!!$F3 2943
15 TraesCS7B01G262000 chr2A 764256503 764259229 2726 False 2065.000000 2065 80.555000 1343 4049 1 chr2A.!!$F2 2706
16 TraesCS7B01G262000 chr2A 208166413 208167184 771 False 1114.000000 1114 92.885000 509 1273 1 chr2A.!!$F1 764
17 TraesCS7B01G262000 chr2D 638724248 638727216 2968 False 2331.000000 2331 81.078000 1105 4049 1 chr2D.!!$F1 2944

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 387 0.253020 CCCCCACCCAGTACCTAACT 60.253 60.000 0.00 0.0 39.81 2.24 F
434 525 0.746063 AGCATGAGGAAGAGAGAGCG 59.254 55.000 0.00 0.0 0.00 5.03 F
864 1011 1.285078 AGTGCCTTAAACTCCATCCCC 59.715 52.381 0.00 0.0 0.00 4.81 F
2679 3176 0.902531 TTTCCGGACAGATCCCACTC 59.097 55.000 1.83 0.0 42.83 3.51 F
4379 4904 1.123077 AGCGCCCAACTGATGAGATA 58.877 50.000 2.29 0.0 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1540 1882 0.250467 TGACCCAAACTGAGCTGCTC 60.250 55.000 22.38 22.38 0.00 4.26 R
2294 2791 2.613691 CAAAAGATGGAATGCTGCCAC 58.386 47.619 0.00 0.00 38.44 5.01 R
2730 3227 1.180029 CTGGAATTGGGCCACTCAAG 58.820 55.000 5.23 5.13 0.00 3.02 R
4472 4997 0.179000 CCTCTTCATCTTGGTCCCCG 59.821 60.000 0.00 0.00 0.00 5.73 R
5424 8518 0.109919 GGTCATTTCGTTTCGGCCAC 60.110 55.000 2.24 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 100 2.617532 GCCCAAGATCTTGCTTCTGTCT 60.618 50.000 27.01 0.00 39.16 3.41
143 145 4.066646 TCGTCACCAAATGTCTCTTTCA 57.933 40.909 0.00 0.00 0.00 2.69
278 339 3.782443 ATCTCCAACGCCGACCCC 61.782 66.667 0.00 0.00 0.00 4.95
284 345 4.192453 AACGCCGACCCCCAAACA 62.192 61.111 0.00 0.00 0.00 2.83
317 378 3.966543 GACACCACCCCCACCCAG 61.967 72.222 0.00 0.00 0.00 4.45
318 379 4.855230 ACACCACCCCCACCCAGT 62.855 66.667 0.00 0.00 0.00 4.00
322 383 2.204090 CACCCCCACCCAGTACCT 60.204 66.667 0.00 0.00 0.00 3.08
326 387 0.253020 CCCCCACCCAGTACCTAACT 60.253 60.000 0.00 0.00 39.81 2.24
339 400 1.985159 ACCTAACTCAATGGCTGGTCA 59.015 47.619 0.00 0.00 0.00 4.02
434 525 0.746063 AGCATGAGGAAGAGAGAGCG 59.254 55.000 0.00 0.00 0.00 5.03
491 582 4.708726 ATGCAGCTTGTTGGAAGATTAC 57.291 40.909 0.00 0.00 0.00 1.89
604 703 6.406370 CATCATGTAGTTTGGACTCCAACTA 58.594 40.000 10.25 11.68 43.82 2.24
660 791 6.896969 ACGTCTTTACAGAGTACAGTAGAAC 58.103 40.000 0.00 0.00 0.00 3.01
816 963 2.354259 GTGCTGCAGCTCTACAGAATT 58.646 47.619 36.61 0.00 42.66 2.17
864 1011 1.285078 AGTGCCTTAAACTCCATCCCC 59.715 52.381 0.00 0.00 0.00 4.81
986 1304 3.869246 CCACTAAACTGTCGAAGTGTGTT 59.131 43.478 10.80 0.00 39.81 3.32
1195 1537 2.749621 GCCTCATGGAAAAATGACTCGT 59.250 45.455 0.00 0.00 33.08 4.18
1392 1734 5.222048 ACCTGAACTTGGGCAACTAAATAGA 60.222 40.000 0.00 0.00 36.22 1.98
1423 1765 4.649218 ACCTTAACCTCAGCACAAACAATT 59.351 37.500 0.00 0.00 0.00 2.32
1569 1911 2.948979 CAGTTTGGGTCACAACAAGCTA 59.051 45.455 1.46 0.00 39.19 3.32
2004 2500 8.455903 TCTTGCTTGGAGATAATAATTTCCAG 57.544 34.615 0.00 0.00 44.73 3.86
2178 2675 5.601662 CTTCCATACAACATCGGATACACT 58.398 41.667 0.00 0.00 0.00 3.55
2438 2935 2.031157 ACTTACGCTTGGATGCAAACAC 60.031 45.455 0.00 0.00 0.00 3.32
2586 3083 6.015434 AGCTTCTTTACATGGAACGGAATTTT 60.015 34.615 0.00 0.00 0.00 1.82
2652 3149 4.274147 TGTTTGTCTTAAGCTTGTCCCAA 58.726 39.130 9.86 4.38 0.00 4.12
2658 3155 5.362430 TGTCTTAAGCTTGTCCCAAAACAAT 59.638 36.000 9.86 0.00 38.41 2.71
2679 3176 0.902531 TTTCCGGACAGATCCCACTC 59.097 55.000 1.83 0.00 42.83 3.51
2730 3227 9.516314 AGTGAGCTTTATTTACAAGAAAACAAC 57.484 29.630 0.00 0.00 0.00 3.32
2745 3242 2.086610 ACAACTTGAGTGGCCCAATT 57.913 45.000 0.00 0.00 0.00 2.32
2771 3268 3.438434 GGAGCTTTAGGAGACTGCAAAAG 59.562 47.826 0.00 1.28 43.88 2.27
3042 3539 4.767578 TCTTCATGGAAGAATCCCTCAG 57.232 45.455 6.22 0.00 44.37 3.35
3043 3540 4.365368 TCTTCATGGAAGAATCCCTCAGA 58.635 43.478 6.22 0.00 44.37 3.27
3434 3934 5.745227 TCATCCATCCTTTGAAGAGTTACC 58.255 41.667 0.00 0.00 0.00 2.85
4094 4616 5.044558 CGAGAATAACTTGTAGGCTCTTCC 58.955 45.833 0.00 0.00 0.00 3.46
4105 4627 3.760580 AGGCTCTTCCGGATATGAAAG 57.239 47.619 4.15 0.00 40.77 2.62
4158 4680 8.760103 TTGATTCATGTGGTCAAATTATGTTG 57.240 30.769 7.40 0.00 0.00 3.33
4159 4681 7.894708 TGATTCATGTGGTCAAATTATGTTGT 58.105 30.769 0.00 0.00 0.00 3.32
4160 4682 9.018582 TGATTCATGTGGTCAAATTATGTTGTA 57.981 29.630 0.00 0.00 0.00 2.41
4161 4683 9.289303 GATTCATGTGGTCAAATTATGTTGTAC 57.711 33.333 0.00 0.00 0.00 2.90
4162 4684 7.994425 TCATGTGGTCAAATTATGTTGTACT 57.006 32.000 0.00 0.00 0.00 2.73
4163 4685 8.039603 TCATGTGGTCAAATTATGTTGTACTC 57.960 34.615 0.00 0.00 0.00 2.59
4164 4686 6.811253 TGTGGTCAAATTATGTTGTACTCC 57.189 37.500 0.00 0.00 0.00 3.85
4165 4687 5.708230 TGTGGTCAAATTATGTTGTACTCCC 59.292 40.000 0.00 0.00 0.00 4.30
4166 4688 5.944007 GTGGTCAAATTATGTTGTACTCCCT 59.056 40.000 0.00 0.00 0.00 4.20
4167 4689 6.433093 GTGGTCAAATTATGTTGTACTCCCTT 59.567 38.462 0.00 0.00 0.00 3.95
4168 4690 7.007723 TGGTCAAATTATGTTGTACTCCCTTT 58.992 34.615 0.00 0.00 0.00 3.11
4169 4691 7.040062 TGGTCAAATTATGTTGTACTCCCTTTG 60.040 37.037 0.00 0.00 0.00 2.77
4170 4692 7.039993 GGTCAAATTATGTTGTACTCCCTTTGT 60.040 37.037 0.00 0.00 0.00 2.83
4171 4693 9.005777 GTCAAATTATGTTGTACTCCCTTTGTA 57.994 33.333 0.00 0.00 0.00 2.41
4172 4694 9.575868 TCAAATTATGTTGTACTCCCTTTGTAA 57.424 29.630 0.00 0.00 0.00 2.41
4217 4739 9.298774 ACATAACTAAAGTAGTGATCTAAACGC 57.701 33.333 0.00 0.00 39.39 4.84
4218 4740 9.517609 CATAACTAAAGTAGTGATCTAAACGCT 57.482 33.333 0.00 0.00 39.39 5.07
4219 4741 9.733219 ATAACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.39 5.03
4220 4742 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
4221 4743 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
4222 4744 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
4223 4745 9.784680 CTAAAGTAGTGATCTAAACGCTCTTAA 57.215 33.333 0.00 0.00 0.00 1.85
4225 4747 9.654663 AAAGTAGTGATCTAAACGCTCTTAAAT 57.345 29.630 0.00 0.00 0.00 1.40
4226 4748 9.654663 AAGTAGTGATCTAAACGCTCTTAAATT 57.345 29.630 0.00 0.00 0.00 1.82
4230 4752 9.654663 AGTGATCTAAACGCTCTTAAATTAGTT 57.345 29.630 0.00 0.00 0.00 2.24
4235 4757 8.863049 TCTAAACGCTCTTAAATTAGTTTACGG 58.137 33.333 0.00 0.00 34.29 4.02
4236 4758 7.656707 AAACGCTCTTAAATTAGTTTACGGA 57.343 32.000 0.00 0.52 31.14 4.69
4237 4759 6.882458 ACGCTCTTAAATTAGTTTACGGAG 57.118 37.500 11.92 11.92 35.39 4.63
4238 4760 5.809051 ACGCTCTTAAATTAGTTTACGGAGG 59.191 40.000 15.29 10.76 34.24 4.30
4239 4761 5.233689 CGCTCTTAAATTAGTTTACGGAGGG 59.766 44.000 15.32 15.32 37.01 4.30
4240 4762 6.343703 GCTCTTAAATTAGTTTACGGAGGGA 58.656 40.000 15.29 0.00 34.24 4.20
4379 4904 1.123077 AGCGCCCAACTGATGAGATA 58.877 50.000 2.29 0.00 0.00 1.98
4455 4980 4.220382 AGATTGGCGAGATTCTAGATCCTG 59.780 45.833 0.00 0.00 0.00 3.86
4517 5042 6.427242 CAGGAGGTACTTTAGACCAAGAAAAC 59.573 42.308 0.00 0.00 41.55 2.43
4544 5069 5.537295 TCATCAAATGGCTGGAATAATGAGG 59.463 40.000 0.00 0.00 0.00 3.86
4607 5132 3.212685 CGAGGTACCTAAAGATCGTCCT 58.787 50.000 16.29 0.00 0.00 3.85
4748 5277 6.512342 ACGTCTAGTTTGCTCTACATAAGT 57.488 37.500 0.00 0.00 0.00 2.24
4750 5279 6.374894 ACGTCTAGTTTGCTCTACATAAGTCT 59.625 38.462 0.00 0.00 0.00 3.24
4751 5280 7.094291 ACGTCTAGTTTGCTCTACATAAGTCTT 60.094 37.037 0.00 0.00 0.00 3.01
4752 5281 7.755822 CGTCTAGTTTGCTCTACATAAGTCTTT 59.244 37.037 0.00 0.00 0.00 2.52
4777 5306 3.888934 TCTTTTTCTTGATTGCAGTCGC 58.111 40.909 4.63 0.00 39.24 5.19
4838 7910 7.303182 TCTATGTATACTGGGGTTCAATCTG 57.697 40.000 4.17 0.00 0.00 2.90
4839 7911 5.975988 ATGTATACTGGGGTTCAATCTGT 57.024 39.130 4.17 0.00 0.00 3.41
4866 7938 9.886132 ATAGTAAATAAAGTTCACGACAGGAAT 57.114 29.630 0.00 0.00 0.00 3.01
4869 7941 9.326339 GTAAATAAAGTTCACGACAGGAATTTC 57.674 33.333 0.00 0.00 0.00 2.17
4870 7942 4.830826 AAAGTTCACGACAGGAATTTCC 57.169 40.909 7.39 7.39 36.58 3.13
4875 7947 2.546368 TCACGACAGGAATTTCCGTTTG 59.454 45.455 9.77 5.79 42.75 2.93
4893 7966 6.093495 TCCGTTTGGTCTTGCTAATTTCTATG 59.907 38.462 0.00 0.00 36.30 2.23
4897 7970 5.126067 TGGTCTTGCTAATTTCTATGCCTC 58.874 41.667 0.00 0.00 0.00 4.70
4899 7972 4.517075 GTCTTGCTAATTTCTATGCCTCCC 59.483 45.833 0.00 0.00 0.00 4.30
4900 7973 4.413520 TCTTGCTAATTTCTATGCCTCCCT 59.586 41.667 0.00 0.00 0.00 4.20
4902 7975 2.816672 GCTAATTTCTATGCCTCCCTGC 59.183 50.000 0.00 0.00 0.00 4.85
4903 7976 3.748668 GCTAATTTCTATGCCTCCCTGCA 60.749 47.826 0.00 0.00 46.94 4.41
4904 7977 2.355010 ATTTCTATGCCTCCCTGCAC 57.645 50.000 0.00 0.00 45.48 4.57
4905 7978 0.255890 TTTCTATGCCTCCCTGCACC 59.744 55.000 0.00 0.00 45.48 5.01
4995 8085 8.213518 AGATGTTAAACTTGCATAGTGGTATG 57.786 34.615 0.00 0.00 39.38 2.39
5054 8144 2.013400 TGCATCGGTATCGCATTGTTT 58.987 42.857 0.00 0.00 36.13 2.83
5072 8162 8.268738 GCATTGTTTCTTACACAAATCAAAGAC 58.731 33.333 0.00 0.00 37.67 3.01
5189 8279 3.307906 CCCCGTCTCGTTGGTGGA 61.308 66.667 0.00 0.00 0.00 4.02
5283 8377 1.461268 AGGTTGGGGGCCCTTTTTG 60.461 57.895 24.38 0.00 36.94 2.44
5284 8378 2.429930 GTTGGGGGCCCTTTTTGC 59.570 61.111 24.38 4.69 36.94 3.68
5295 8389 1.138069 CCCTTTTTGCCAGAAACGGTT 59.862 47.619 0.00 0.00 0.00 4.44
5305 8399 1.228459 GAAACGGTTGGGGGCTCTT 60.228 57.895 0.00 0.00 0.00 2.85
5309 8403 2.035783 GGTTGGGGGCTCTTGGAC 59.964 66.667 0.00 0.00 0.00 4.02
5310 8404 2.035783 GTTGGGGGCTCTTGGACC 59.964 66.667 0.00 0.00 44.23 4.46
5311 8405 2.121506 TTGGGGGCTCTTGGACCT 60.122 61.111 0.00 0.00 44.42 3.85
5312 8406 2.538141 TTGGGGGCTCTTGGACCTG 61.538 63.158 0.00 0.00 44.42 4.00
5313 8407 3.732849 GGGGGCTCTTGGACCTGG 61.733 72.222 0.00 0.00 44.42 4.45
5314 8408 4.432741 GGGGCTCTTGGACCTGGC 62.433 72.222 0.00 0.00 44.42 4.85
5315 8409 3.650950 GGGCTCTTGGACCTGGCA 61.651 66.667 0.00 0.00 40.87 4.92
5316 8410 2.436109 GGCTCTTGGACCTGGCAA 59.564 61.111 0.00 0.00 0.00 4.52
5317 8411 1.000396 GGCTCTTGGACCTGGCAAT 60.000 57.895 0.00 0.00 0.00 3.56
5318 8412 1.034292 GGCTCTTGGACCTGGCAATC 61.034 60.000 0.00 0.00 0.00 2.67
5319 8413 1.034292 GCTCTTGGACCTGGCAATCC 61.034 60.000 9.96 9.96 35.37 3.01
5320 8414 0.745845 CTCTTGGACCTGGCAATCCG 60.746 60.000 11.69 0.86 37.87 4.18
5321 8415 1.750399 CTTGGACCTGGCAATCCGG 60.750 63.158 11.69 0.00 37.87 5.14
5322 8416 2.196997 CTTGGACCTGGCAATCCGGA 62.197 60.000 6.61 6.61 41.45 5.14
5323 8417 2.124695 GGACCTGGCAATCCGGAC 60.125 66.667 6.12 0.00 41.45 4.79
5324 8418 2.124695 GACCTGGCAATCCGGACC 60.125 66.667 6.12 3.97 41.45 4.46
5325 8419 4.096003 ACCTGGCAATCCGGACCG 62.096 66.667 6.12 6.99 41.45 4.79
5326 8420 3.781307 CCTGGCAATCCGGACCGA 61.781 66.667 17.49 1.45 41.45 4.69
5327 8421 2.267642 CTGGCAATCCGGACCGAA 59.732 61.111 17.49 0.00 41.45 4.30
5328 8422 1.376683 CTGGCAATCCGGACCGAAA 60.377 57.895 17.49 3.01 41.45 3.46
5329 8423 0.958382 CTGGCAATCCGGACCGAAAA 60.958 55.000 17.49 0.06 41.45 2.29
5330 8424 1.238625 TGGCAATCCGGACCGAAAAC 61.239 55.000 17.49 0.09 34.14 2.43
5331 8425 1.504900 GCAATCCGGACCGAAAACC 59.495 57.895 17.49 0.00 0.00 3.27
5332 8426 1.929806 GCAATCCGGACCGAAAACCC 61.930 60.000 17.49 0.00 0.00 4.11
5333 8427 1.376295 AATCCGGACCGAAAACCCG 60.376 57.895 17.49 0.00 42.64 5.28
5370 8464 2.896854 CGGCATGGTCCGTCATGG 60.897 66.667 3.80 0.00 43.34 3.66
5371 8465 2.516930 GGCATGGTCCGTCATGGG 60.517 66.667 10.99 0.00 43.34 4.00
5372 8466 3.211963 GCATGGTCCGTCATGGGC 61.212 66.667 10.99 0.00 43.34 5.36
5398 8492 3.406559 GCACGGGCTAAACGGATC 58.593 61.111 0.00 0.00 36.96 3.36
5399 8493 2.522638 GCACGGGCTAAACGGATCG 61.523 63.158 0.00 0.00 36.96 3.69
5400 8494 1.153706 CACGGGCTAAACGGATCGT 60.154 57.895 0.00 0.00 43.97 3.73
5401 8495 1.153706 ACGGGCTAAACGGATCGTG 60.154 57.895 0.00 0.00 39.99 4.35
5402 8496 2.522638 CGGGCTAAACGGATCGTGC 61.523 63.158 0.00 0.00 39.99 5.34
5403 8497 2.178235 GGGCTAAACGGATCGTGCC 61.178 63.158 10.50 10.50 42.86 5.01
5404 8498 1.153429 GGCTAAACGGATCGTGCCT 60.153 57.895 11.36 0.00 41.23 4.75
5405 8499 1.429148 GGCTAAACGGATCGTGCCTG 61.429 60.000 11.36 0.00 41.23 4.85
5406 8500 1.429148 GCTAAACGGATCGTGCCTGG 61.429 60.000 0.00 0.00 39.99 4.45
5407 8501 0.810031 CTAAACGGATCGTGCCTGGG 60.810 60.000 0.00 0.00 39.99 4.45
5408 8502 2.862674 TAAACGGATCGTGCCTGGGC 62.863 60.000 4.43 4.43 39.99 5.36
5411 8505 4.864334 GGATCGTGCCTGGGCCAG 62.864 72.222 27.04 27.04 41.09 4.85
5420 8514 4.437587 CTGGGCCAGGAAGCTGGG 62.438 72.222 26.34 0.00 44.38 4.45
5425 8519 4.335647 CCAGGAAGCTGGGCACGT 62.336 66.667 0.00 0.00 40.68 4.49
5426 8520 3.052082 CAGGAAGCTGGGCACGTG 61.052 66.667 12.28 12.28 0.00 4.49
5427 8521 4.335647 AGGAAGCTGGGCACGTGG 62.336 66.667 18.88 0.86 0.00 4.94
5437 8531 3.641986 GCACGTGGCCGAAACGAA 61.642 61.111 19.80 0.00 43.68 3.85
5438 8532 3.015677 CACGTGGCCGAAACGAAA 58.984 55.556 19.80 0.00 43.68 3.46
5439 8533 1.572447 CACGTGGCCGAAACGAAAT 59.428 52.632 19.80 0.00 43.68 2.17
5440 8534 0.724453 CACGTGGCCGAAACGAAATG 60.724 55.000 19.80 5.14 43.68 2.32
5441 8535 0.881159 ACGTGGCCGAAACGAAATGA 60.881 50.000 19.80 0.00 43.68 2.57
5442 8536 0.452122 CGTGGCCGAAACGAAATGAC 60.452 55.000 8.34 0.00 43.68 3.06
5443 8537 0.109919 GTGGCCGAAACGAAATGACC 60.110 55.000 0.00 0.00 0.00 4.02
5444 8538 1.238625 TGGCCGAAACGAAATGACCC 61.239 55.000 0.00 0.00 0.00 4.46
5445 8539 1.238625 GGCCGAAACGAAATGACCCA 61.239 55.000 0.00 0.00 0.00 4.51
5446 8540 0.808755 GCCGAAACGAAATGACCCAT 59.191 50.000 0.00 0.00 0.00 4.00
5447 8541 1.201414 GCCGAAACGAAATGACCCATT 59.799 47.619 0.00 0.00 35.39 3.16
5448 8542 2.352323 GCCGAAACGAAATGACCCATTT 60.352 45.455 4.77 4.77 45.25 2.32
5449 8543 3.859252 GCCGAAACGAAATGACCCATTTT 60.859 43.478 6.40 0.00 43.05 1.82
5450 8544 3.917985 CCGAAACGAAATGACCCATTTTC 59.082 43.478 6.40 0.66 43.05 2.29
5451 8545 4.320935 CCGAAACGAAATGACCCATTTTCT 60.321 41.667 6.40 0.00 43.05 2.52
5452 8546 5.219633 CGAAACGAAATGACCCATTTTCTT 58.780 37.500 6.40 1.88 43.05 2.52
5453 8547 5.689961 CGAAACGAAATGACCCATTTTCTTT 59.310 36.000 6.40 7.01 43.05 2.52
5454 8548 6.345723 CGAAACGAAATGACCCATTTTCTTTG 60.346 38.462 6.40 2.43 43.05 2.77
5455 8549 5.529581 ACGAAATGACCCATTTTCTTTGT 57.470 34.783 6.40 0.19 43.05 2.83
5456 8550 5.288804 ACGAAATGACCCATTTTCTTTGTG 58.711 37.500 6.40 0.00 43.05 3.33
5457 8551 5.068460 ACGAAATGACCCATTTTCTTTGTGA 59.932 36.000 6.40 0.00 43.05 3.58
5458 8552 5.982516 CGAAATGACCCATTTTCTTTGTGAA 59.017 36.000 6.40 0.00 43.05 3.18
5459 8553 6.478344 CGAAATGACCCATTTTCTTTGTGAAA 59.522 34.615 6.40 0.00 43.05 2.69
5460 8554 7.171337 CGAAATGACCCATTTTCTTTGTGAAAT 59.829 33.333 6.40 0.00 43.05 2.17
5461 8555 7.967890 AATGACCCATTTTCTTTGTGAAATC 57.032 32.000 0.00 0.00 43.34 2.17
5462 8556 6.729690 TGACCCATTTTCTTTGTGAAATCT 57.270 33.333 0.00 0.00 43.34 2.40
5463 8557 7.831691 TGACCCATTTTCTTTGTGAAATCTA 57.168 32.000 0.00 0.00 43.34 1.98
5464 8558 8.421249 TGACCCATTTTCTTTGTGAAATCTAT 57.579 30.769 0.00 0.00 43.34 1.98
5465 8559 9.527157 TGACCCATTTTCTTTGTGAAATCTATA 57.473 29.630 0.00 0.00 43.34 1.31
5496 8590 5.691896 ACCTAAAATACAGGTTCATAGGCC 58.308 41.667 0.00 0.00 44.18 5.19
5497 8591 5.432060 ACCTAAAATACAGGTTCATAGGCCT 59.568 40.000 11.78 11.78 44.18 5.19
5498 8592 6.618196 ACCTAAAATACAGGTTCATAGGCCTA 59.382 38.462 16.60 16.60 44.18 3.93
5499 8593 7.128263 ACCTAAAATACAGGTTCATAGGCCTAA 59.872 37.037 18.42 0.00 44.18 2.69
5500 8594 7.996644 CCTAAAATACAGGTTCATAGGCCTAAA 59.003 37.037 18.42 4.44 33.07 1.85
5501 8595 9.403583 CTAAAATACAGGTTCATAGGCCTAAAA 57.596 33.333 18.42 11.63 33.07 1.52
5502 8596 8.658840 AAAATACAGGTTCATAGGCCTAAAAA 57.341 30.769 18.42 11.25 33.07 1.94
5503 8597 7.640597 AATACAGGTTCATAGGCCTAAAAAC 57.359 36.000 18.42 21.49 33.07 2.43
5504 8598 4.007659 ACAGGTTCATAGGCCTAAAAACG 58.992 43.478 18.42 14.35 33.07 3.60
5505 8599 4.258543 CAGGTTCATAGGCCTAAAAACGA 58.741 43.478 18.42 5.87 33.07 3.85
5506 8600 4.881850 CAGGTTCATAGGCCTAAAAACGAT 59.118 41.667 18.42 12.50 33.07 3.73
5507 8601 5.007724 CAGGTTCATAGGCCTAAAAACGATC 59.992 44.000 18.42 10.92 33.07 3.69
5508 8602 4.275196 GGTTCATAGGCCTAAAAACGATCC 59.725 45.833 18.42 12.34 0.00 3.36
5509 8603 4.081322 TCATAGGCCTAAAAACGATCCC 57.919 45.455 18.42 0.00 0.00 3.85
5510 8604 3.456644 TCATAGGCCTAAAAACGATCCCA 59.543 43.478 18.42 0.00 0.00 4.37
5511 8605 2.891191 AGGCCTAAAAACGATCCCAA 57.109 45.000 1.29 0.00 0.00 4.12
5512 8606 2.443416 AGGCCTAAAAACGATCCCAAC 58.557 47.619 1.29 0.00 0.00 3.77
5513 8607 2.164338 GGCCTAAAAACGATCCCAACA 58.836 47.619 0.00 0.00 0.00 3.33
5514 8608 2.163613 GGCCTAAAAACGATCCCAACAG 59.836 50.000 0.00 0.00 0.00 3.16
5515 8609 2.163613 GCCTAAAAACGATCCCAACAGG 59.836 50.000 0.00 0.00 0.00 4.00
5516 8610 2.163613 CCTAAAAACGATCCCAACAGGC 59.836 50.000 0.00 0.00 34.51 4.85
5517 8611 1.995376 AAAAACGATCCCAACAGGCT 58.005 45.000 0.00 0.00 34.51 4.58
5518 8612 1.247567 AAAACGATCCCAACAGGCTG 58.752 50.000 14.16 14.16 34.51 4.85
5519 8613 0.400213 AAACGATCCCAACAGGCTGA 59.600 50.000 23.66 0.00 34.51 4.26
5520 8614 0.400213 AACGATCCCAACAGGCTGAA 59.600 50.000 23.66 1.09 34.51 3.02
5521 8615 0.400213 ACGATCCCAACAGGCTGAAA 59.600 50.000 23.66 1.46 34.51 2.69
5522 8616 1.202879 ACGATCCCAACAGGCTGAAAA 60.203 47.619 23.66 1.84 34.51 2.29
5523 8617 2.094675 CGATCCCAACAGGCTGAAAAT 58.905 47.619 23.66 6.90 34.51 1.82
5524 8618 3.278574 CGATCCCAACAGGCTGAAAATA 58.721 45.455 23.66 3.73 34.51 1.40
5525 8619 3.885297 CGATCCCAACAGGCTGAAAATAT 59.115 43.478 23.66 8.72 34.51 1.28
5526 8620 5.063204 CGATCCCAACAGGCTGAAAATATA 58.937 41.667 23.66 0.30 34.51 0.86
5527 8621 5.707298 CGATCCCAACAGGCTGAAAATATAT 59.293 40.000 23.66 5.43 34.51 0.86
5528 8622 6.348786 CGATCCCAACAGGCTGAAAATATATG 60.349 42.308 23.66 6.45 34.51 1.78
5529 8623 4.584325 TCCCAACAGGCTGAAAATATATGC 59.416 41.667 23.66 0.00 34.51 3.14
5530 8624 4.341806 CCCAACAGGCTGAAAATATATGCA 59.658 41.667 23.66 0.00 0.00 3.96
5531 8625 5.508489 CCCAACAGGCTGAAAATATATGCAG 60.508 44.000 23.66 6.27 0.00 4.41
5536 8630 4.170292 GCTGAAAATATATGCAGCCCAG 57.830 45.455 17.96 8.08 45.92 4.45
5537 8631 3.613432 GCTGAAAATATATGCAGCCCAGC 60.613 47.826 17.96 12.41 45.92 4.85
5538 8632 2.553602 TGAAAATATATGCAGCCCAGCG 59.446 45.455 0.00 0.00 37.31 5.18
5539 8633 2.276732 AAATATATGCAGCCCAGCGT 57.723 45.000 0.00 0.00 37.31 5.07
5540 8634 1.527034 AATATATGCAGCCCAGCGTG 58.473 50.000 0.00 0.00 37.31 5.34
5541 8635 0.957395 ATATATGCAGCCCAGCGTGC 60.957 55.000 0.00 4.69 40.29 5.34
5542 8636 2.043604 TATATGCAGCCCAGCGTGCT 62.044 55.000 0.00 0.00 40.54 4.40
5543 8637 2.043604 ATATGCAGCCCAGCGTGCTA 62.044 55.000 0.00 4.06 40.54 3.49
5544 8638 2.250741 TATGCAGCCCAGCGTGCTAA 62.251 55.000 0.00 0.00 40.54 3.09
5545 8639 3.055719 GCAGCCCAGCGTGCTAAA 61.056 61.111 0.00 0.00 36.81 1.85
5546 8640 2.870372 CAGCCCAGCGTGCTAAAC 59.130 61.111 0.00 0.00 36.81 2.01
5556 8650 2.263153 GTGCTAAACGGGCCAATGT 58.737 52.632 4.39 0.00 0.00 2.71
5557 8651 1.455248 GTGCTAAACGGGCCAATGTA 58.545 50.000 4.39 0.00 0.00 2.29
5558 8652 1.131693 GTGCTAAACGGGCCAATGTAC 59.868 52.381 4.39 0.00 0.00 2.90
5559 8653 1.003812 TGCTAAACGGGCCAATGTACT 59.996 47.619 4.39 0.00 0.00 2.73
5560 8654 1.400494 GCTAAACGGGCCAATGTACTG 59.600 52.381 4.39 0.00 0.00 2.74
5561 8655 2.014128 CTAAACGGGCCAATGTACTGG 58.986 52.381 4.39 0.00 39.71 4.00
5562 8656 0.111639 AAACGGGCCAATGTACTGGT 59.888 50.000 4.39 0.00 38.86 4.00
5563 8657 0.322187 AACGGGCCAATGTACTGGTC 60.322 55.000 4.39 0.34 40.62 4.02
5565 8659 4.218722 GGCCAATGTACTGGTCCG 57.781 61.111 0.00 0.00 38.86 4.79
5566 8660 1.298667 GGCCAATGTACTGGTCCGT 59.701 57.895 0.00 0.00 38.86 4.69
5567 8661 0.322187 GGCCAATGTACTGGTCCGTT 60.322 55.000 0.00 0.00 38.86 4.44
5568 8662 1.530323 GCCAATGTACTGGTCCGTTT 58.470 50.000 3.32 0.00 38.86 3.60
5569 8663 2.616001 GGCCAATGTACTGGTCCGTTTA 60.616 50.000 0.00 0.00 38.86 2.01
5570 8664 2.417586 GCCAATGTACTGGTCCGTTTAC 59.582 50.000 3.32 0.00 38.86 2.01
5571 8665 3.867216 GCCAATGTACTGGTCCGTTTACT 60.867 47.826 3.32 0.00 38.86 2.24
5572 8666 4.621274 GCCAATGTACTGGTCCGTTTACTA 60.621 45.833 3.32 0.00 38.86 1.82
5573 8667 5.481105 CCAATGTACTGGTCCGTTTACTAA 58.519 41.667 0.00 0.00 0.00 2.24
5574 8668 5.349543 CCAATGTACTGGTCCGTTTACTAAC 59.650 44.000 0.00 0.00 0.00 2.34
5575 8669 5.990120 ATGTACTGGTCCGTTTACTAACT 57.010 39.130 0.00 0.00 31.89 2.24
5576 8670 7.315142 CAATGTACTGGTCCGTTTACTAACTA 58.685 38.462 0.00 0.00 31.89 2.24
5577 8671 6.500684 TGTACTGGTCCGTTTACTAACTAG 57.499 41.667 0.00 0.00 31.89 2.57
5578 8672 5.415701 TGTACTGGTCCGTTTACTAACTAGG 59.584 44.000 0.00 0.00 31.89 3.02
5579 8673 4.411013 ACTGGTCCGTTTACTAACTAGGT 58.589 43.478 0.00 0.00 31.89 3.08
5580 8674 4.460731 ACTGGTCCGTTTACTAACTAGGTC 59.539 45.833 0.00 0.00 31.89 3.85
5581 8675 3.440173 TGGTCCGTTTACTAACTAGGTCG 59.560 47.826 0.00 0.00 31.89 4.79
5582 8676 3.440522 GGTCCGTTTACTAACTAGGTCGT 59.559 47.826 0.00 0.00 31.89 4.34
5583 8677 4.406943 GTCCGTTTACTAACTAGGTCGTG 58.593 47.826 0.00 0.00 31.89 4.35
5584 8678 3.119849 TCCGTTTACTAACTAGGTCGTGC 60.120 47.826 0.00 0.00 31.89 5.34
5585 8679 2.842485 CGTTTACTAACTAGGTCGTGCG 59.158 50.000 0.00 0.00 31.89 5.34
5586 8680 3.667960 CGTTTACTAACTAGGTCGTGCGT 60.668 47.826 0.00 0.00 31.89 5.24
5587 8681 3.476295 TTACTAACTAGGTCGTGCGTG 57.524 47.619 0.00 0.00 0.00 5.34
5588 8682 1.527034 ACTAACTAGGTCGTGCGTGA 58.473 50.000 0.00 0.00 0.00 4.35
5589 8683 1.467734 ACTAACTAGGTCGTGCGTGAG 59.532 52.381 0.00 0.00 0.00 3.51
5601 8695 3.869272 CGTGAGCCTGAATGCGCC 61.869 66.667 4.18 0.00 36.02 6.53
5602 8696 2.747460 GTGAGCCTGAATGCGCCA 60.747 61.111 4.18 0.00 36.02 5.69
5603 8697 2.747460 TGAGCCTGAATGCGCCAC 60.747 61.111 4.18 0.00 36.02 5.01
5604 8698 2.437359 GAGCCTGAATGCGCCACT 60.437 61.111 4.18 0.00 36.02 4.00
5605 8699 2.034687 AGCCTGAATGCGCCACTT 59.965 55.556 4.18 0.00 36.02 3.16
5606 8700 0.744414 GAGCCTGAATGCGCCACTTA 60.744 55.000 4.18 0.00 36.02 2.24
5607 8701 1.026718 AGCCTGAATGCGCCACTTAC 61.027 55.000 4.18 0.00 36.02 2.34
5608 8702 1.026718 GCCTGAATGCGCCACTTACT 61.027 55.000 4.18 0.00 0.00 2.24
5609 8703 1.742411 GCCTGAATGCGCCACTTACTA 60.742 52.381 4.18 0.00 0.00 1.82
5610 8704 2.627945 CCTGAATGCGCCACTTACTAA 58.372 47.619 4.18 0.00 0.00 2.24
5611 8705 2.351726 CCTGAATGCGCCACTTACTAAC 59.648 50.000 4.18 0.00 0.00 2.34
5612 8706 2.351726 CTGAATGCGCCACTTACTAACC 59.648 50.000 4.18 0.00 0.00 2.85
5613 8707 2.289756 TGAATGCGCCACTTACTAACCA 60.290 45.455 4.18 0.00 0.00 3.67
5614 8708 2.710096 ATGCGCCACTTACTAACCAT 57.290 45.000 4.18 0.00 0.00 3.55
5615 8709 1.732941 TGCGCCACTTACTAACCATG 58.267 50.000 4.18 0.00 0.00 3.66
5616 8710 0.377203 GCGCCACTTACTAACCATGC 59.623 55.000 0.00 0.00 0.00 4.06
5617 8711 1.014352 CGCCACTTACTAACCATGCC 58.986 55.000 0.00 0.00 0.00 4.40
5618 8712 1.389555 GCCACTTACTAACCATGCCC 58.610 55.000 0.00 0.00 0.00 5.36
5619 8713 2.022238 GCCACTTACTAACCATGCCCC 61.022 57.143 0.00 0.00 0.00 5.80
5620 8714 1.409661 CCACTTACTAACCATGCCCCC 60.410 57.143 0.00 0.00 0.00 5.40
5621 8715 0.544697 ACTTACTAACCATGCCCCCG 59.455 55.000 0.00 0.00 0.00 5.73
5622 8716 0.544697 CTTACTAACCATGCCCCCGT 59.455 55.000 0.00 0.00 0.00 5.28
5623 8717 0.253610 TTACTAACCATGCCCCCGTG 59.746 55.000 0.00 0.00 0.00 4.94
5651 8745 3.362581 TGCCTAGCACGATTAGCAC 57.637 52.632 0.00 0.00 31.71 4.40
5652 8746 0.527600 TGCCTAGCACGATTAGCACG 60.528 55.000 0.00 0.00 31.71 5.34
5653 8747 0.248907 GCCTAGCACGATTAGCACGA 60.249 55.000 0.00 0.00 34.70 4.35
5654 8748 1.759994 CCTAGCACGATTAGCACGAG 58.240 55.000 0.00 0.00 34.70 4.18
5655 8749 1.065701 CCTAGCACGATTAGCACGAGT 59.934 52.381 0.00 0.00 34.70 4.18
5656 8750 2.376956 CTAGCACGATTAGCACGAGTC 58.623 52.381 0.00 0.00 34.70 3.36
5657 8751 0.523546 AGCACGATTAGCACGAGTCG 60.524 55.000 11.85 11.85 39.78 4.18
5658 8752 0.797249 GCACGATTAGCACGAGTCGT 60.797 55.000 13.56 13.56 46.95 4.34
5667 8761 2.657296 ACGAGTCGTGTTGTGCCG 60.657 61.111 19.16 0.00 39.18 5.69
5668 8762 3.403057 CGAGTCGTGTTGTGCCGG 61.403 66.667 3.82 0.00 0.00 6.13
5669 8763 3.041940 GAGTCGTGTTGTGCCGGG 61.042 66.667 2.18 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 145 5.661056 TGGAACGAATAGATGACAAGAGT 57.339 39.130 0.00 0.00 0.00 3.24
278 339 0.734889 GACTGATGCGGGATGTTTGG 59.265 55.000 0.00 0.00 0.00 3.28
284 345 0.977627 TGTCCTGACTGATGCGGGAT 60.978 55.000 0.00 0.00 42.45 3.85
315 376 3.055094 ACCAGCCATTGAGTTAGGTACTG 60.055 47.826 0.00 0.00 41.52 2.74
317 378 3.055385 TGACCAGCCATTGAGTTAGGTAC 60.055 47.826 0.00 0.00 0.00 3.34
318 379 3.178046 TGACCAGCCATTGAGTTAGGTA 58.822 45.455 0.00 0.00 0.00 3.08
322 383 4.263462 ACAGAATGACCAGCCATTGAGTTA 60.263 41.667 0.00 0.00 39.69 2.24
326 387 2.439409 CACAGAATGACCAGCCATTGA 58.561 47.619 0.00 0.00 39.69 2.57
434 525 4.702826 GTGAGCACGCGCGTTGTC 62.703 66.667 35.90 30.29 45.49 3.18
534 627 2.549754 ACCATTTCAACTCAGTCGCTTG 59.450 45.455 0.00 0.00 0.00 4.01
604 703 3.434179 TTGCTGGTGGGGGTTGGT 61.434 61.111 0.00 0.00 0.00 3.67
633 758 8.194433 TCTACTGTACTCTGTAAAGACGTATG 57.806 38.462 2.30 0.00 0.00 2.39
660 791 9.119329 TCAAACGGACAATTTTTCGTATTTATG 57.881 29.630 0.00 0.00 35.26 1.90
718 865 7.500559 AGCATCAGTTTAGATTATCCTTCCAAC 59.499 37.037 0.00 0.00 0.00 3.77
726 873 7.806960 GCCAATCAAGCATCAGTTTAGATTATC 59.193 37.037 0.00 0.00 0.00 1.75
816 963 1.746470 TGCGAGTCGGTCTGAGAATA 58.254 50.000 15.52 0.00 0.00 1.75
986 1304 7.255625 CCTGAGGAGACATGTAATTTCTATCGA 60.256 40.741 0.00 0.00 32.55 3.59
1392 1734 1.636148 TGAGGTTAAGGTACCGCAGT 58.364 50.000 6.18 0.00 42.09 4.40
1423 1765 1.948611 GCTTGGGATCGTGCCAGTAAA 60.949 52.381 0.00 0.00 39.66 2.01
1533 1875 2.522836 AACTGAGCTGCTCCATATCG 57.477 50.000 25.61 10.10 0.00 2.92
1540 1882 0.250467 TGACCCAAACTGAGCTGCTC 60.250 55.000 22.38 22.38 0.00 4.26
1729 2071 7.294584 AGTGATGAACTATTAGCTAGGAGAGT 58.705 38.462 10.15 0.00 37.36 3.24
2178 2675 4.214310 TCAAAGTTTGGATGCTTGGAAGA 58.786 39.130 15.47 0.00 0.00 2.87
2294 2791 2.613691 CAAAAGATGGAATGCTGCCAC 58.386 47.619 0.00 0.00 38.44 5.01
2652 3149 4.021456 GGGATCTGTCCGGAAAAATTGTTT 60.021 41.667 5.23 0.00 46.09 2.83
2658 3155 1.702957 AGTGGGATCTGTCCGGAAAAA 59.297 47.619 5.23 0.00 46.09 1.94
2679 3176 7.874940 TCAATTGACTCAAATTACCAACTGAG 58.125 34.615 3.38 1.81 40.92 3.35
2730 3227 1.180029 CTGGAATTGGGCCACTCAAG 58.820 55.000 5.23 5.13 0.00 3.02
2745 3242 2.461695 CAGTCTCCTAAAGCTCCTGGA 58.538 52.381 0.00 0.00 0.00 3.86
2771 3268 4.855531 AGAAAGGTTCAATACGTGCAAAC 58.144 39.130 0.00 0.00 0.00 2.93
2779 3276 7.203255 AGCTGTTACAAGAAAGGTTCAATAC 57.797 36.000 0.00 0.00 0.00 1.89
4191 4713 9.298774 GCGTTTAGATCACTACTTTAGTTATGT 57.701 33.333 0.00 0.00 36.76 2.29
4192 4714 9.517609 AGCGTTTAGATCACTACTTTAGTTATG 57.482 33.333 0.00 0.00 36.76 1.90
4193 4715 9.733219 GAGCGTTTAGATCACTACTTTAGTTAT 57.267 33.333 0.00 0.00 36.76 1.89
4194 4716 8.954350 AGAGCGTTTAGATCACTACTTTAGTTA 58.046 33.333 0.00 0.00 37.82 2.24
4195 4717 7.828712 AGAGCGTTTAGATCACTACTTTAGTT 58.171 34.615 0.00 0.00 37.82 2.24
4196 4718 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
4197 4719 9.784680 TTAAGAGCGTTTAGATCACTACTTTAG 57.215 33.333 0.00 0.00 37.82 1.85
4199 4721 9.654663 ATTTAAGAGCGTTTAGATCACTACTTT 57.345 29.630 0.00 0.00 37.82 2.66
4200 4722 9.654663 AATTTAAGAGCGTTTAGATCACTACTT 57.345 29.630 0.00 0.00 37.82 2.24
4204 4726 9.654663 AACTAATTTAAGAGCGTTTAGATCACT 57.345 29.630 0.00 0.00 37.82 3.41
4209 4731 8.863049 CCGTAAACTAATTTAAGAGCGTTTAGA 58.137 33.333 0.00 0.00 33.14 2.10
4210 4732 8.863049 TCCGTAAACTAATTTAAGAGCGTTTAG 58.137 33.333 0.00 0.00 33.14 1.85
4211 4733 8.755696 TCCGTAAACTAATTTAAGAGCGTTTA 57.244 30.769 0.00 0.00 33.14 2.01
4212 4734 7.148523 CCTCCGTAAACTAATTTAAGAGCGTTT 60.149 37.037 0.00 0.00 34.49 3.60
4213 4735 6.312180 CCTCCGTAAACTAATTTAAGAGCGTT 59.688 38.462 0.00 0.00 34.49 4.84
4214 4736 5.809051 CCTCCGTAAACTAATTTAAGAGCGT 59.191 40.000 0.00 0.00 34.49 5.07
4215 4737 5.233689 CCCTCCGTAAACTAATTTAAGAGCG 59.766 44.000 0.00 0.00 34.49 5.03
4216 4738 6.343703 TCCCTCCGTAAACTAATTTAAGAGC 58.656 40.000 0.00 0.00 34.49 4.09
4217 4739 7.554211 ACTCCCTCCGTAAACTAATTTAAGAG 58.446 38.462 0.00 0.00 35.05 2.85
4218 4740 7.486407 ACTCCCTCCGTAAACTAATTTAAGA 57.514 36.000 0.00 0.00 33.14 2.10
4219 4741 9.828039 AATACTCCCTCCGTAAACTAATTTAAG 57.172 33.333 0.00 0.00 32.04 1.85
4227 4749 7.922811 CGTTAATTAATACTCCCTCCGTAAACT 59.077 37.037 0.31 0.00 0.00 2.66
4228 4750 7.169813 CCGTTAATTAATACTCCCTCCGTAAAC 59.830 40.741 0.31 0.00 0.00 2.01
4229 4751 7.147742 ACCGTTAATTAATACTCCCTCCGTAAA 60.148 37.037 0.31 0.00 0.00 2.01
4230 4752 6.323739 ACCGTTAATTAATACTCCCTCCGTAA 59.676 38.462 0.31 0.00 0.00 3.18
4231 4753 5.833131 ACCGTTAATTAATACTCCCTCCGTA 59.167 40.000 0.31 0.00 0.00 4.02
4232 4754 4.651045 ACCGTTAATTAATACTCCCTCCGT 59.349 41.667 0.31 0.00 0.00 4.69
4233 4755 5.205759 ACCGTTAATTAATACTCCCTCCG 57.794 43.478 0.31 0.00 0.00 4.63
4234 4756 7.049754 TGAAACCGTTAATTAATACTCCCTCC 58.950 38.462 0.31 0.00 0.00 4.30
4235 4757 8.496707 TTGAAACCGTTAATTAATACTCCCTC 57.503 34.615 0.31 0.00 0.00 4.30
4379 4904 7.175104 TGTAAAGGCTCAGACCATCTTTAAAT 58.825 34.615 0.00 0.00 33.49 1.40
4472 4997 0.179000 CCTCTTCATCTTGGTCCCCG 59.821 60.000 0.00 0.00 0.00 5.73
4490 5015 2.185387 TGGTCTAAAGTACCTCCTGCC 58.815 52.381 0.00 0.00 37.91 4.85
4544 5069 1.840181 TAACGAGCTCGATGATGCAC 58.160 50.000 40.58 0.00 43.02 4.57
4586 5111 3.003482 CAGGACGATCTTTAGGTACCTCG 59.997 52.174 20.32 17.21 0.00 4.63
4590 5115 3.795623 TGCAGGACGATCTTTAGGTAC 57.204 47.619 0.00 0.00 0.00 3.34
4607 5132 1.598882 TGTAAACGTCCTGCATTGCA 58.401 45.000 11.50 11.50 36.92 4.08
4752 5281 6.237808 GCGACTGCAATCAAGAAAAAGAAAAA 60.238 34.615 0.00 0.00 42.15 1.94
4777 5306 5.851177 GTGGAAGACAATTCACAACATAACG 59.149 40.000 0.00 0.00 0.00 3.18
4838 7910 9.793252 TCCTGTCGTGAACTTTATTTACTATAC 57.207 33.333 0.00 0.00 0.00 1.47
4857 7929 1.877443 ACCAAACGGAAATTCCTGTCG 59.123 47.619 10.64 0.00 33.30 4.35
4866 7938 5.300792 AGAAATTAGCAAGACCAAACGGAAA 59.699 36.000 0.00 0.00 0.00 3.13
4869 7941 4.766404 AGAAATTAGCAAGACCAAACGG 57.234 40.909 0.00 0.00 0.00 4.44
4870 7942 5.739161 GCATAGAAATTAGCAAGACCAAACG 59.261 40.000 0.00 0.00 0.00 3.60
4875 7947 4.517075 GGAGGCATAGAAATTAGCAAGACC 59.483 45.833 0.00 0.00 0.00 3.85
4893 7966 0.034089 ATTGTTAGGTGCAGGGAGGC 60.034 55.000 0.00 0.00 0.00 4.70
4897 7970 3.055094 ACTCTACATTGTTAGGTGCAGGG 60.055 47.826 0.00 0.00 0.00 4.45
4899 7972 8.198109 AGTATTACTCTACATTGTTAGGTGCAG 58.802 37.037 0.00 0.00 0.00 4.41
4900 7973 8.074613 AGTATTACTCTACATTGTTAGGTGCA 57.925 34.615 0.00 0.00 0.00 4.57
4995 8085 4.038642 TCAGGTCTAACAATTTGGTTTGGC 59.961 41.667 0.78 0.00 32.29 4.52
4996 8086 5.782893 TCAGGTCTAACAATTTGGTTTGG 57.217 39.130 0.78 0.00 32.29 3.28
5054 8144 5.376625 AGCTGGTCTTTGATTTGTGTAAGA 58.623 37.500 0.00 0.00 0.00 2.10
5072 8162 1.450312 CTTGGCCGAGGTAAGCTGG 60.450 63.158 12.81 0.00 0.00 4.85
5283 8377 2.989253 CCCCCAACCGTTTCTGGC 60.989 66.667 0.00 0.00 0.00 4.85
5284 8378 2.989253 GCCCCCAACCGTTTCTGG 60.989 66.667 0.00 0.00 0.00 3.86
5295 8389 2.935481 CAGGTCCAAGAGCCCCCA 60.935 66.667 0.00 0.00 0.00 4.96
5305 8399 2.609299 TCCGGATTGCCAGGTCCA 60.609 61.111 0.00 0.00 34.05 4.02
5309 8403 2.813226 TTTCGGTCCGGATTGCCAGG 62.813 60.000 7.81 0.00 0.00 4.45
5310 8404 0.958382 TTTTCGGTCCGGATTGCCAG 60.958 55.000 7.81 1.24 0.00 4.85
5311 8405 1.073373 TTTTCGGTCCGGATTGCCA 59.927 52.632 7.81 0.00 0.00 4.92
5312 8406 1.504900 GTTTTCGGTCCGGATTGCC 59.495 57.895 7.81 2.82 0.00 4.52
5313 8407 1.504900 GGTTTTCGGTCCGGATTGC 59.495 57.895 7.81 0.00 0.00 3.56
5314 8408 1.641123 CGGGTTTTCGGTCCGGATTG 61.641 60.000 7.81 2.94 40.07 2.67
5315 8409 1.376295 CGGGTTTTCGGTCCGGATT 60.376 57.895 7.81 0.00 40.07 3.01
5316 8410 2.266689 CGGGTTTTCGGTCCGGAT 59.733 61.111 7.81 0.00 40.07 4.18
5354 8448 2.516930 CCCATGACGGACCATGCC 60.517 66.667 0.00 0.00 41.83 4.40
5355 8449 3.211963 GCCCATGACGGACCATGC 61.212 66.667 0.00 0.00 41.83 4.06
5356 8450 2.516930 GGCCCATGACGGACCATG 60.517 66.667 0.00 7.46 42.58 3.66
5357 8451 3.014538 TGGCCCATGACGGACCAT 61.015 61.111 0.00 0.00 36.56 3.55
5358 8452 3.716195 CTGGCCCATGACGGACCA 61.716 66.667 0.00 0.00 36.56 4.02
5359 8453 4.489771 CCTGGCCCATGACGGACC 62.490 72.222 0.00 0.00 36.56 4.46
5363 8457 4.720902 TGTGCCTGGCCCATGACG 62.721 66.667 17.53 0.00 0.00 4.35
5364 8458 2.753043 CTGTGCCTGGCCCATGAC 60.753 66.667 17.53 7.72 0.00 3.06
5365 8459 4.746309 GCTGTGCCTGGCCCATGA 62.746 66.667 17.53 0.00 0.00 3.07
5381 8475 2.522638 CGATCCGTTTAGCCCGTGC 61.523 63.158 0.00 0.00 37.95 5.34
5382 8476 1.153706 ACGATCCGTTTAGCCCGTG 60.154 57.895 0.00 0.00 36.35 4.94
5383 8477 1.153706 CACGATCCGTTTAGCCCGT 60.154 57.895 0.00 0.00 38.32 5.28
5384 8478 2.522638 GCACGATCCGTTTAGCCCG 61.523 63.158 0.00 0.00 38.32 6.13
5385 8479 2.178235 GGCACGATCCGTTTAGCCC 61.178 63.158 7.76 0.00 39.46 5.19
5386 8480 1.153429 AGGCACGATCCGTTTAGCC 60.153 57.895 10.18 10.18 43.56 3.93
5387 8481 1.429148 CCAGGCACGATCCGTTTAGC 61.429 60.000 0.00 0.00 38.32 3.09
5388 8482 0.810031 CCCAGGCACGATCCGTTTAG 60.810 60.000 0.00 0.00 38.32 1.85
5389 8483 1.219664 CCCAGGCACGATCCGTTTA 59.780 57.895 0.00 0.00 38.32 2.01
5390 8484 2.046314 CCCAGGCACGATCCGTTT 60.046 61.111 0.00 0.00 38.32 3.60
5391 8485 4.778143 GCCCAGGCACGATCCGTT 62.778 66.667 3.12 0.00 38.32 4.44
5394 8488 4.864334 CTGGCCCAGGCACGATCC 62.864 72.222 11.50 0.00 44.11 3.36
5395 8489 4.864334 CCTGGCCCAGGCACGATC 62.864 72.222 18.86 0.00 45.13 3.69
5409 8503 3.052082 CACGTGCCCAGCTTCCTG 61.052 66.667 0.82 0.00 38.85 3.86
5410 8504 4.335647 CCACGTGCCCAGCTTCCT 62.336 66.667 10.91 0.00 0.00 3.36
5420 8514 2.452366 ATTTCGTTTCGGCCACGTGC 62.452 55.000 10.91 5.69 41.85 5.34
5421 8515 0.724453 CATTTCGTTTCGGCCACGTG 60.724 55.000 9.08 9.08 41.85 4.49
5422 8516 0.881159 TCATTTCGTTTCGGCCACGT 60.881 50.000 13.17 0.00 41.85 4.49
5423 8517 0.452122 GTCATTTCGTTTCGGCCACG 60.452 55.000 2.24 5.50 42.74 4.94
5424 8518 0.109919 GGTCATTTCGTTTCGGCCAC 60.110 55.000 2.24 0.00 0.00 5.01
5425 8519 1.238625 GGGTCATTTCGTTTCGGCCA 61.239 55.000 2.24 0.00 0.00 5.36
5426 8520 1.238625 TGGGTCATTTCGTTTCGGCC 61.239 55.000 0.00 0.00 0.00 6.13
5427 8521 0.808755 ATGGGTCATTTCGTTTCGGC 59.191 50.000 0.00 0.00 0.00 5.54
5428 8522 3.569250 AAATGGGTCATTTCGTTTCGG 57.431 42.857 0.54 0.00 39.50 4.30
5429 8523 4.794169 AGAAAATGGGTCATTTCGTTTCG 58.206 39.130 6.37 0.00 42.32 3.46
5430 8524 6.478673 ACAAAGAAAATGGGTCATTTCGTTTC 59.521 34.615 6.37 1.79 42.32 2.78
5431 8525 6.257630 CACAAAGAAAATGGGTCATTTCGTTT 59.742 34.615 6.37 6.68 42.32 3.60
5432 8526 5.752955 CACAAAGAAAATGGGTCATTTCGTT 59.247 36.000 6.37 0.00 42.32 3.85
5433 8527 5.068460 TCACAAAGAAAATGGGTCATTTCGT 59.932 36.000 6.37 0.00 42.32 3.85
5434 8528 5.527951 TCACAAAGAAAATGGGTCATTTCG 58.472 37.500 6.37 0.00 42.32 3.46
5435 8529 7.784633 TTTCACAAAGAAAATGGGTCATTTC 57.215 32.000 6.37 0.00 42.32 2.17
5474 8568 5.941788 AGGCCTATGAACCTGTATTTTAGG 58.058 41.667 1.29 0.00 41.22 2.69
5475 8569 8.974060 TTTAGGCCTATGAACCTGTATTTTAG 57.026 34.615 14.74 0.00 36.77 1.85
5476 8570 9.756571 TTTTTAGGCCTATGAACCTGTATTTTA 57.243 29.630 14.74 0.00 36.77 1.52
5477 8571 8.528643 GTTTTTAGGCCTATGAACCTGTATTTT 58.471 33.333 14.74 0.00 36.77 1.82
5478 8572 7.148137 CGTTTTTAGGCCTATGAACCTGTATTT 60.148 37.037 23.00 0.00 36.77 1.40
5479 8573 6.317893 CGTTTTTAGGCCTATGAACCTGTATT 59.682 38.462 23.00 0.00 36.77 1.89
5480 8574 5.820947 CGTTTTTAGGCCTATGAACCTGTAT 59.179 40.000 23.00 0.00 36.77 2.29
5481 8575 5.046448 TCGTTTTTAGGCCTATGAACCTGTA 60.046 40.000 23.00 10.80 36.77 2.74
5482 8576 4.007659 CGTTTTTAGGCCTATGAACCTGT 58.992 43.478 23.00 0.00 36.77 4.00
5483 8577 4.258543 TCGTTTTTAGGCCTATGAACCTG 58.741 43.478 23.00 14.99 36.77 4.00
5484 8578 4.563140 TCGTTTTTAGGCCTATGAACCT 57.437 40.909 23.00 0.00 40.24 3.50
5485 8579 4.275196 GGATCGTTTTTAGGCCTATGAACC 59.725 45.833 23.00 15.71 0.00 3.62
5486 8580 4.275196 GGGATCGTTTTTAGGCCTATGAAC 59.725 45.833 14.74 18.69 0.00 3.18
5487 8581 4.080243 TGGGATCGTTTTTAGGCCTATGAA 60.080 41.667 14.74 9.12 0.00 2.57
5488 8582 3.456644 TGGGATCGTTTTTAGGCCTATGA 59.543 43.478 14.74 5.35 0.00 2.15
5489 8583 3.815809 TGGGATCGTTTTTAGGCCTATG 58.184 45.455 14.74 0.00 0.00 2.23
5490 8584 4.204799 GTTGGGATCGTTTTTAGGCCTAT 58.795 43.478 14.74 0.00 0.00 2.57
5491 8585 3.009253 TGTTGGGATCGTTTTTAGGCCTA 59.991 43.478 8.91 8.91 0.00 3.93
5492 8586 2.224917 TGTTGGGATCGTTTTTAGGCCT 60.225 45.455 11.78 11.78 0.00 5.19
5493 8587 2.163613 CTGTTGGGATCGTTTTTAGGCC 59.836 50.000 0.00 0.00 0.00 5.19
5494 8588 2.163613 CCTGTTGGGATCGTTTTTAGGC 59.836 50.000 0.00 0.00 37.23 3.93
5495 8589 2.163613 GCCTGTTGGGATCGTTTTTAGG 59.836 50.000 0.00 0.00 37.23 2.69
5496 8590 3.081804 AGCCTGTTGGGATCGTTTTTAG 58.918 45.455 0.00 0.00 37.23 1.85
5497 8591 2.817258 CAGCCTGTTGGGATCGTTTTTA 59.183 45.455 0.00 0.00 37.23 1.52
5498 8592 1.613437 CAGCCTGTTGGGATCGTTTTT 59.387 47.619 0.00 0.00 37.23 1.94
5499 8593 1.202879 TCAGCCTGTTGGGATCGTTTT 60.203 47.619 0.00 0.00 37.23 2.43
5500 8594 0.400213 TCAGCCTGTTGGGATCGTTT 59.600 50.000 0.00 0.00 37.23 3.60
5501 8595 0.400213 TTCAGCCTGTTGGGATCGTT 59.600 50.000 0.00 0.00 37.23 3.85
5502 8596 0.400213 TTTCAGCCTGTTGGGATCGT 59.600 50.000 0.00 0.00 37.23 3.73
5503 8597 1.533625 TTTTCAGCCTGTTGGGATCG 58.466 50.000 0.00 0.00 37.23 3.69
5504 8598 6.571150 GCATATATTTTCAGCCTGTTGGGATC 60.571 42.308 0.00 0.00 37.23 3.36
5505 8599 5.244626 GCATATATTTTCAGCCTGTTGGGAT 59.755 40.000 0.00 0.00 37.23 3.85
5506 8600 4.584325 GCATATATTTTCAGCCTGTTGGGA 59.416 41.667 0.00 0.00 37.23 4.37
5507 8601 4.341806 TGCATATATTTTCAGCCTGTTGGG 59.658 41.667 0.00 0.00 38.36 4.12
5508 8602 5.518848 TGCATATATTTTCAGCCTGTTGG 57.481 39.130 0.00 0.00 0.00 3.77
5509 8603 4.980434 GCTGCATATATTTTCAGCCTGTTG 59.020 41.667 15.42 0.00 44.35 3.33
5510 8604 5.192327 GCTGCATATATTTTCAGCCTGTT 57.808 39.130 15.42 0.00 44.35 3.16
5511 8605 4.843220 GCTGCATATATTTTCAGCCTGT 57.157 40.909 15.42 0.00 44.35 4.00
5516 8610 3.365666 CGCTGGGCTGCATATATTTTCAG 60.366 47.826 0.50 0.00 0.00 3.02
5517 8611 2.553602 CGCTGGGCTGCATATATTTTCA 59.446 45.455 0.50 0.00 0.00 2.69
5518 8612 2.554032 ACGCTGGGCTGCATATATTTTC 59.446 45.455 0.50 0.00 0.00 2.29
5519 8613 2.294233 CACGCTGGGCTGCATATATTTT 59.706 45.455 0.50 0.00 0.00 1.82
5520 8614 1.881973 CACGCTGGGCTGCATATATTT 59.118 47.619 0.50 0.00 0.00 1.40
5521 8615 1.527034 CACGCTGGGCTGCATATATT 58.473 50.000 0.50 0.00 0.00 1.28
5522 8616 0.957395 GCACGCTGGGCTGCATATAT 60.957 55.000 0.50 0.00 34.58 0.86
5523 8617 1.597854 GCACGCTGGGCTGCATATA 60.598 57.895 0.50 0.00 34.58 0.86
5524 8618 2.043604 TAGCACGCTGGGCTGCATAT 62.044 55.000 14.30 4.45 42.62 1.78
5525 8619 2.250741 TTAGCACGCTGGGCTGCATA 62.251 55.000 14.30 0.00 42.62 3.14
5526 8620 3.626996 TTAGCACGCTGGGCTGCAT 62.627 57.895 14.30 8.26 42.62 3.96
5527 8621 3.841137 TTTAGCACGCTGGGCTGCA 62.841 57.895 14.30 0.00 42.62 4.41
5528 8622 3.055719 TTTAGCACGCTGGGCTGC 61.056 61.111 14.30 9.91 42.62 5.25
5529 8623 2.870372 GTTTAGCACGCTGGGCTG 59.130 61.111 14.30 0.00 42.62 4.85
5530 8624 2.742372 CGTTTAGCACGCTGGGCT 60.742 61.111 10.07 10.07 43.37 5.19
5538 8632 1.131693 GTACATTGGCCCGTTTAGCAC 59.868 52.381 0.00 0.00 0.00 4.40
5539 8633 1.003812 AGTACATTGGCCCGTTTAGCA 59.996 47.619 0.00 0.00 0.00 3.49
5540 8634 1.400494 CAGTACATTGGCCCGTTTAGC 59.600 52.381 0.00 0.00 0.00 3.09
5541 8635 2.014128 CCAGTACATTGGCCCGTTTAG 58.986 52.381 0.00 0.00 0.00 1.85
5542 8636 1.351683 ACCAGTACATTGGCCCGTTTA 59.648 47.619 0.00 0.00 42.18 2.01
5543 8637 0.111639 ACCAGTACATTGGCCCGTTT 59.888 50.000 0.00 0.00 42.18 3.60
5544 8638 0.322187 GACCAGTACATTGGCCCGTT 60.322 55.000 0.00 0.00 42.18 4.44
5545 8639 1.298667 GACCAGTACATTGGCCCGT 59.701 57.895 0.00 0.00 42.18 5.28
5546 8640 1.451387 GGACCAGTACATTGGCCCG 60.451 63.158 0.00 0.00 42.18 6.13
5547 8641 1.451387 CGGACCAGTACATTGGCCC 60.451 63.158 0.00 0.00 42.18 5.80
5548 8642 0.322187 AACGGACCAGTACATTGGCC 60.322 55.000 0.00 0.00 42.18 5.36
5549 8643 1.530323 AAACGGACCAGTACATTGGC 58.470 50.000 1.12 0.00 42.18 4.52
5550 8644 3.934068 AGTAAACGGACCAGTACATTGG 58.066 45.455 0.00 0.00 44.09 3.16
5551 8645 6.161381 AGTTAGTAAACGGACCAGTACATTG 58.839 40.000 0.00 0.00 40.73 2.82
5552 8646 6.350629 AGTTAGTAAACGGACCAGTACATT 57.649 37.500 0.00 0.00 40.73 2.71
5553 8647 5.990120 AGTTAGTAAACGGACCAGTACAT 57.010 39.130 0.00 0.00 40.73 2.29
5554 8648 5.415701 CCTAGTTAGTAAACGGACCAGTACA 59.584 44.000 0.00 0.00 40.73 2.90
5555 8649 5.416013 ACCTAGTTAGTAAACGGACCAGTAC 59.584 44.000 0.00 0.00 40.73 2.73
5556 8650 5.570320 ACCTAGTTAGTAAACGGACCAGTA 58.430 41.667 0.00 0.00 40.73 2.74
5557 8651 4.411013 ACCTAGTTAGTAAACGGACCAGT 58.589 43.478 0.00 0.00 40.73 4.00
5558 8652 4.437930 CGACCTAGTTAGTAAACGGACCAG 60.438 50.000 0.00 0.00 40.73 4.00
5559 8653 3.440173 CGACCTAGTTAGTAAACGGACCA 59.560 47.826 0.00 0.00 40.73 4.02
5560 8654 3.440522 ACGACCTAGTTAGTAAACGGACC 59.559 47.826 0.00 0.00 40.73 4.46
5561 8655 4.406943 CACGACCTAGTTAGTAAACGGAC 58.593 47.826 0.00 0.00 40.73 4.79
5562 8656 3.119849 GCACGACCTAGTTAGTAAACGGA 60.120 47.826 0.00 0.00 40.73 4.69
5563 8657 3.174375 GCACGACCTAGTTAGTAAACGG 58.826 50.000 0.00 0.00 40.73 4.44
5564 8658 2.842485 CGCACGACCTAGTTAGTAAACG 59.158 50.000 0.00 0.00 40.73 3.60
5565 8659 3.605486 CACGCACGACCTAGTTAGTAAAC 59.395 47.826 0.00 0.00 35.72 2.01
5566 8660 3.501828 TCACGCACGACCTAGTTAGTAAA 59.498 43.478 0.00 0.00 0.00 2.01
5567 8661 3.073678 TCACGCACGACCTAGTTAGTAA 58.926 45.455 0.00 0.00 0.00 2.24
5568 8662 2.674852 CTCACGCACGACCTAGTTAGTA 59.325 50.000 0.00 0.00 0.00 1.82
5569 8663 1.467734 CTCACGCACGACCTAGTTAGT 59.532 52.381 0.00 0.00 0.00 2.24
5570 8664 1.794437 GCTCACGCACGACCTAGTTAG 60.794 57.143 0.00 0.00 35.78 2.34
5571 8665 0.169672 GCTCACGCACGACCTAGTTA 59.830 55.000 0.00 0.00 35.78 2.24
5572 8666 1.080705 GCTCACGCACGACCTAGTT 60.081 57.895 0.00 0.00 35.78 2.24
5573 8667 2.567049 GCTCACGCACGACCTAGT 59.433 61.111 0.00 0.00 35.78 2.57
5574 8668 2.202623 GGCTCACGCACGACCTAG 60.203 66.667 0.00 0.00 38.10 3.02
5575 8669 2.675423 AGGCTCACGCACGACCTA 60.675 61.111 0.00 0.00 38.10 3.08
5576 8670 4.363990 CAGGCTCACGCACGACCT 62.364 66.667 0.00 0.00 38.10 3.85
5577 8671 3.858868 TTCAGGCTCACGCACGACC 62.859 63.158 0.00 0.00 38.10 4.79
5578 8672 1.738099 ATTCAGGCTCACGCACGAC 60.738 57.895 0.00 0.00 38.10 4.34
5579 8673 1.737735 CATTCAGGCTCACGCACGA 60.738 57.895 0.00 0.00 38.10 4.35
5580 8674 2.780643 CATTCAGGCTCACGCACG 59.219 61.111 0.00 0.00 38.10 5.34
5581 8675 2.482374 GCATTCAGGCTCACGCAC 59.518 61.111 0.00 0.00 38.10 5.34
5582 8676 3.120385 CGCATTCAGGCTCACGCA 61.120 61.111 0.00 0.00 38.10 5.24
5583 8677 4.527157 GCGCATTCAGGCTCACGC 62.527 66.667 0.30 0.00 39.49 5.34
5584 8678 3.869272 GGCGCATTCAGGCTCACG 61.869 66.667 10.83 0.00 0.00 4.35
5585 8679 2.747460 TGGCGCATTCAGGCTCAC 60.747 61.111 10.83 0.00 35.01 3.51
5586 8680 2.747460 GTGGCGCATTCAGGCTCA 60.747 61.111 10.83 0.00 35.01 4.26
5587 8681 0.744414 TAAGTGGCGCATTCAGGCTC 60.744 55.000 10.83 0.00 35.01 4.70
5588 8682 1.026718 GTAAGTGGCGCATTCAGGCT 61.027 55.000 10.83 0.00 35.01 4.58
5589 8683 1.026718 AGTAAGTGGCGCATTCAGGC 61.027 55.000 10.83 0.00 0.00 4.85
5590 8684 2.309528 TAGTAAGTGGCGCATTCAGG 57.690 50.000 10.83 0.00 0.00 3.86
5591 8685 2.351726 GGTTAGTAAGTGGCGCATTCAG 59.648 50.000 10.83 0.00 0.00 3.02
5592 8686 2.289756 TGGTTAGTAAGTGGCGCATTCA 60.290 45.455 10.83 0.00 0.00 2.57
5593 8687 2.352388 TGGTTAGTAAGTGGCGCATTC 58.648 47.619 10.83 0.00 0.00 2.67
5594 8688 2.483014 TGGTTAGTAAGTGGCGCATT 57.517 45.000 10.83 3.00 0.00 3.56
5595 8689 2.288666 CATGGTTAGTAAGTGGCGCAT 58.711 47.619 10.83 0.00 0.00 4.73
5596 8690 1.732941 CATGGTTAGTAAGTGGCGCA 58.267 50.000 10.83 0.00 0.00 6.09
5597 8691 0.377203 GCATGGTTAGTAAGTGGCGC 59.623 55.000 0.00 0.00 0.00 6.53
5598 8692 1.014352 GGCATGGTTAGTAAGTGGCG 58.986 55.000 0.00 0.00 0.00 5.69
5599 8693 1.389555 GGGCATGGTTAGTAAGTGGC 58.610 55.000 0.00 7.50 34.95 5.01
5600 8694 1.409661 GGGGGCATGGTTAGTAAGTGG 60.410 57.143 0.00 0.00 0.00 4.00
5601 8695 1.745827 CGGGGGCATGGTTAGTAAGTG 60.746 57.143 0.00 0.00 0.00 3.16
5602 8696 0.544697 CGGGGGCATGGTTAGTAAGT 59.455 55.000 0.00 0.00 0.00 2.24
5603 8697 0.544697 ACGGGGGCATGGTTAGTAAG 59.455 55.000 0.00 0.00 0.00 2.34
5604 8698 0.253610 CACGGGGGCATGGTTAGTAA 59.746 55.000 0.00 0.00 0.00 2.24
5605 8699 1.628238 CCACGGGGGCATGGTTAGTA 61.628 60.000 0.00 0.00 0.00 1.82
5606 8700 2.674754 CACGGGGGCATGGTTAGT 59.325 61.111 0.00 0.00 0.00 2.24
5607 8701 2.124320 CCACGGGGGCATGGTTAG 60.124 66.667 0.00 0.00 0.00 2.34
5633 8727 0.527600 CGTGCTAATCGTGCTAGGCA 60.528 55.000 0.00 0.00 35.60 4.75
5634 8728 0.248907 TCGTGCTAATCGTGCTAGGC 60.249 55.000 0.00 0.00 0.00 3.93
5635 8729 1.065701 ACTCGTGCTAATCGTGCTAGG 59.934 52.381 0.00 0.00 0.00 3.02
5636 8730 2.376956 GACTCGTGCTAATCGTGCTAG 58.623 52.381 0.00 0.00 0.00 3.42
5637 8731 1.267882 CGACTCGTGCTAATCGTGCTA 60.268 52.381 0.00 0.00 0.00 3.49
5638 8732 0.523546 CGACTCGTGCTAATCGTGCT 60.524 55.000 0.00 0.00 0.00 4.40
5639 8733 0.797249 ACGACTCGTGCTAATCGTGC 60.797 55.000 2.53 0.00 45.50 5.34
5640 8734 3.307829 ACGACTCGTGCTAATCGTG 57.692 52.632 2.53 0.00 45.50 4.35
5650 8744 2.657296 CGGCACAACACGACTCGT 60.657 61.111 0.00 0.00 42.36 4.18
5651 8745 3.403057 CCGGCACAACACGACTCG 61.403 66.667 0.00 0.00 0.00 4.18
5652 8746 3.041940 CCCGGCACAACACGACTC 61.042 66.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.