AutoCloner

Multiple sequence alignment - TraesCS7B01G261900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G261900	chr7B	100.000	3503	0	0	1	3503	482487539	482491041	0.000000e+00	6469
1	TraesCS7B01G261900	chr7B	77.865	2033	420	23	1	2015	482685427	482687447	0.000000e+00	1234
2	TraesCS7B01G261900	chr7B	83.391	578	85	7	2078	2648	482687600	482688173	3.100000e-145	525
3	TraesCS7B01G261900	chr7B	80.876	434	77	5	2078	2509	482075383	482074954	1.560000e-88	337
4	TraesCS7B01G261900	chr7A	93.345	2930	162	20	5	2906	539448588	539445664	0.000000e+00	4300
5	TraesCS7B01G261900	chr7A	93.583	1839	116	1	1	1837	539406229	539404391	0.000000e+00	2741
6	TraesCS7B01G261900	chr7A	78.048	2756	554	36	1	2726	539324912	539322178	0.000000e+00	1690
7	TraesCS7B01G261900	chr7A	90.618	938	75	8	1830	2762	539403682	539402753	0.000000e+00	1232
8	TraesCS7B01G261900	chr7A	86.521	549	48	8	2761	3297	539445198	539444664	6.520000e-162	580
9	TraesCS7B01G261900	chr7A	90.024	411	30	3	2761	3168	539402672	539402270	4.010000e-144	521
10	TraesCS7B01G261900	chr7A	89.529	382	33	3	2381	2762	539445661	539445287	8.800000e-131	477
11	TraesCS7B01G261900	chr7A	88.732	213	11	3	3299	3503	539402268	539402061	7.510000e-62	248
12	TraesCS7B01G261900	chr7D	91.751	2461	163	17	853	3287	460108941	460111387	0.000000e+00	3384
13	TraesCS7B01G261900	chr7D	78.996	2609	502	32	1	2579	460280781	460283373	0.000000e+00	1740
14	TraesCS7B01G261900	chr7D	93.357	858	55	1	7	862	460080676	460081533	0.000000e+00	1267
15	TraesCS7B01G261900	chr2B	78.017	2552	477	58	21	2515	784189702	784192226	0.000000e+00	1528
16	TraesCS7B01G261900	chr2B	76.950	2564	505	63	1	2504	798129324	798131861	0.000000e+00	1382
17	TraesCS7B01G261900	chr2A	76.841	2539	488	67	21	2504	764310066	764312559	0.000000e+00	1339
18	TraesCS7B01G261900	chr2D	76.484	2543	493	71	21	2504	638805386	638807882	0.000000e+00	1286

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G261900	chr7B	482487539	482491041	3502	False	6469.000000	6469	100.000000	1	3503	1	chr7B.!!$F1	3502
1	TraesCS7B01G261900	chr7B	482685427	482688173	2746	False	879.500000	1234	80.628000	1	2648	2	chr7B.!!$F2	2647
2	TraesCS7B01G261900	chr7A	539444664	539448588	3924	True	1785.666667	4300	89.798333	5	3297	3	chr7A.!!$R3	3292
3	TraesCS7B01G261900	chr7A	539322178	539324912	2734	True	1690.000000	1690	78.048000	1	2726	1	chr7A.!!$R1	2725
4	TraesCS7B01G261900	chr7A	539402061	539406229	4168	True	1185.500000	2741	90.739250	1	3503	4	chr7A.!!$R2	3502
5	TraesCS7B01G261900	chr7D	460108941	460111387	2446	False	3384.000000	3384	91.751000	853	3287	1	chr7D.!!$F2	2434
6	TraesCS7B01G261900	chr7D	460280781	460283373	2592	False	1740.000000	1740	78.996000	1	2579	1	chr7D.!!$F3	2578
7	TraesCS7B01G261900	chr7D	460080676	460081533	857	False	1267.000000	1267	93.357000	7	862	1	chr7D.!!$F1	855
8	TraesCS7B01G261900	chr2B	784189702	784192226	2524	False	1528.000000	1528	78.017000	21	2515	1	chr2B.!!$F1	2494
9	TraesCS7B01G261900	chr2B	798129324	798131861	2537	False	1382.000000	1382	76.950000	1	2504	1	chr2B.!!$F2	2503
10	TraesCS7B01G261900	chr2A	764310066	764312559	2493	False	1339.000000	1339	76.841000	21	2504	1	chr2A.!!$F1	2483
11	TraesCS7B01G261900	chr2D	638805386	638807882	2496	False	1286.000000	1286	76.484000	21	2504	1	chr2D.!!$F1	2483

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
932	935	1.689273	CCTCCATTTAGAGTCCCTCCG	59.311	57.143	0.0	0.0	31.53	4.63	F
1692	1708	0.257039	GGCTCCATCCAACACTCCAT	59.743	55.000	0.0	0.0	0.00	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1787	1805	0.532573	ACAGTGTGTCATAGGAGGCG	59.467	55.0	0.0	0.0	0.0	5.52	R
3121	4662	0.107214	ACTGCGTGATGGGGTATTGG	60.107	55.0	0.0	0.0	0.0	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	9.676195	CTCTCTACAATATATCAACACTCACAG	57.324	37.037	0.00	0.00	0.00	3.66
111	112	4.709397	CAGAAAATATTGGCCACACCCTTA	59.291	41.667	3.88	0.00	37.83	2.69
222	223	2.470983	TCTCCGTGACAATGCATTCA	57.529	45.000	9.53	2.49	0.00	2.57
297	298	2.413837	GCAAGAACCAACTCGAAGCTA	58.586	47.619	0.00	0.00	0.00	3.32
426	427	8.779354	TCTTCCAAAAAGCTTAGAATCTCTAC	57.221	34.615	0.00	0.00	0.00	2.59
932	935	1.689273	CCTCCATTTAGAGTCCCTCCG	59.311	57.143	0.00	0.00	31.53	4.63
1168	1171	2.034685	GTCCAAGGGAACAAAGAGTTGC	59.965	50.000	0.00	0.00	46.64	4.17
1461	1468	5.069516	TGGGTCCGTATACAAAGGTAGAATC	59.930	44.000	3.32	0.00	31.88	2.52
1488	1498	3.419943	TGAAGAACATGCAGTTGCCATA	58.580	40.909	6.31	0.00	41.51	2.74
1496	1506	4.990426	ACATGCAGTTGCCATAAAAGTTTC	59.010	37.500	1.06	0.00	41.18	2.78
1531	1541	1.603802	CTGGAGCGACAAAAAGCTTCA	59.396	47.619	0.00	0.00	45.86	3.02
1578	1588	4.166523	ACACTCGTCATCGTAATCTTGTG	58.833	43.478	0.00	0.00	38.33	3.33
1636	1646	4.518211	CAGGACATGAGTTCAAAGCTCTTT	59.482	41.667	0.00	0.00	34.30	2.52
1692	1708	0.257039	GGCTCCATCCAACACTCCAT	59.743	55.000	0.00	0.00	0.00	3.41
1787	1805	4.499696	GGATTACCTGCATAACCATTGCAC	60.500	45.833	0.00	0.00	44.73	4.57
2454	3337	2.167693	TCCCTCGATGCAAGACGTTTAT	59.832	45.455	0.00	0.00	0.00	1.40
2488	3371	4.628333	CCGCAATCAAAGAAGCATTTTCAT	59.372	37.500	0.00	0.00	0.00	2.57
2504	3387	1.351076	TCATCACTGCAGGGTTGAGA	58.649	50.000	22.94	11.12	0.00	3.27
2597	4032	7.061752	ACATAATGCTTTACTTTGTCTCGAC	57.938	36.000	0.00	0.00	0.00	4.20
2608	4043	1.698165	TGTCTCGACAGAAATCGTGC	58.302	50.000	0.00	0.00	42.80	5.34
2618	4053	2.923655	CAGAAATCGTGCTATGTCGTGT	59.076	45.455	0.00	0.00	0.00	4.49
2633	4068	4.562082	TGTCGTGTATCGTCTTCCATTTT	58.438	39.130	0.00	0.00	40.80	1.82
2661	4096	7.272084	ACAAGTAAATCTACGTTCGTCATGTAC	59.728	37.037	0.00	5.52	32.87	2.90
2736	4171	6.313744	TCTTTCGACTTGGATTTTCCTTTC	57.686	37.500	0.00	0.00	37.46	2.62
2738	4173	6.546034	TCTTTCGACTTGGATTTTCCTTTCTT	59.454	34.615	0.00	0.00	37.46	2.52
2739	4174	6.709018	TTCGACTTGGATTTTCCTTTCTTT	57.291	33.333	0.00	0.00	37.46	2.52
2740	4175	6.709018	TCGACTTGGATTTTCCTTTCTTTT	57.291	33.333	0.00	0.00	37.46	2.27
2741	4176	7.107639	TCGACTTGGATTTTCCTTTCTTTTT	57.892	32.000	0.00	0.00	37.46	1.94
2823	4349	6.432783	TCACACCCTTAACCAGATAAATTGTG	59.567	38.462	0.00	0.00	0.00	3.33
2879	4405	0.394488	TGAAACCCGTGTGCAAGGAA	60.394	50.000	5.74	0.00	31.21	3.36
2925	4454	1.151668	CAGAGAGCAACAAACCTCGG	58.848	55.000	0.00	0.00	33.39	4.63
2947	4476	3.823330	GACGGACGCCCTGACGAT	61.823	66.667	0.00	0.00	36.70	3.73
2949	4478	3.822192	CGGACGCCCTGACGATGA	61.822	66.667	0.00	0.00	36.70	2.92
2950	4479	2.577059	GGACGCCCTGACGATGAA	59.423	61.111	0.00	0.00	36.70	2.57
2951	4480	1.810030	GGACGCCCTGACGATGAAC	60.810	63.158	0.00	0.00	36.70	3.18
2956	4485	3.902063	CCTGACGATGAACGCGCG	61.902	66.667	30.96	30.96	46.94	6.86
2958	4487	3.114483	CTGACGATGAACGCGCGAC	62.114	63.158	39.36	27.97	46.94	5.19
2974	4503	1.511768	GACGTAGCACAGGGAGGTC	59.488	63.158	0.00	0.00	0.00	3.85
2980	4509	2.997315	CACAGGGAGGTCTGCGGA	60.997	66.667	0.00	0.00	38.26	5.54
2982	4511	2.363018	CAGGGAGGTCTGCGGAGA	60.363	66.667	0.98	0.98	0.00	3.71
2986	4515	1.144936	GGAGGTCTGCGGAGAATGG	59.855	63.158	8.71	0.00	0.00	3.16
3006	4535	1.487976	GAGTGGATGGATTCCTGCTGA	59.512	52.381	3.95	0.00	45.68	4.26
3114	4655	2.357517	GCAGGAGGTCGGTGTGTG	60.358	66.667	0.00	0.00	0.00	3.82
3118	4659	2.108157	GAGGTCGGTGTGTGTGCA	59.892	61.111	0.00	0.00	0.00	4.57
3142	4688	1.401552	CAATACCCCATCACGCAGTTG	59.598	52.381	0.00	0.00	41.61	3.16
3236	4794	3.654806	CCTGAATCACCCCAATCCTAGAT	59.345	47.826	0.00	0.00	0.00	1.98
3259	4817	1.351017	TCGCTTCTTCCCAATCCTTGT	59.649	47.619	0.00	0.00	0.00	3.16
3266	4824	2.079170	TCCCAATCCTTGTTGTTGCA	57.921	45.000	0.00	0.00	0.00	4.08
3267	4825	2.607499	TCCCAATCCTTGTTGTTGCAT	58.393	42.857	0.00	0.00	0.00	3.96
3287	4846	1.258445	GGGCAGAGGAACGAAGGAGA	61.258	60.000	0.00	0.00	0.00	3.71
3288	4847	0.174617	GGCAGAGGAACGAAGGAGAG	59.825	60.000	0.00	0.00	0.00	3.20
3289	4848	0.892063	GCAGAGGAACGAAGGAGAGT	59.108	55.000	0.00	0.00	0.00	3.24
3290	4849	1.135228	GCAGAGGAACGAAGGAGAGTC	60.135	57.143	0.00	0.00	0.00	3.36
3292	4851	2.757868	CAGAGGAACGAAGGAGAGTCAT	59.242	50.000	0.00	0.00	0.00	3.06
3294	4853	4.036262	CAGAGGAACGAAGGAGAGTCATAG	59.964	50.000	0.00	0.00	0.00	2.23
3295	4854	4.080243	AGAGGAACGAAGGAGAGTCATAGA	60.080	45.833	0.00	0.00	0.00	1.98
3296	4855	4.798882	AGGAACGAAGGAGAGTCATAGAT	58.201	43.478	0.00	0.00	0.00	1.98
3297	4856	4.582656	AGGAACGAAGGAGAGTCATAGATG	59.417	45.833	0.00	0.00	0.00	2.90
3323	4882	1.597302	CCAGCCAGATGATGAGCCG	60.597	63.158	0.00	0.00	0.00	5.52
3330	4889	1.301558	GATGATGAGCCGCCTCCAG	60.302	63.158	0.00	0.00	37.29	3.86
3334	4893	2.914777	GATGAGCCGCCTCCAGTGAC	62.915	65.000	0.00	0.00	37.29	3.67
3341	4900	2.122729	CCTCCAGTGACCCCTCCA	59.877	66.667	0.00	0.00	0.00	3.86
3357	4916	1.078426	CCAACGGATCGCCTTTCCT	60.078	57.895	0.00	0.00	0.00	3.36
3358	4917	0.676782	CCAACGGATCGCCTTTCCTT	60.677	55.000	0.00	0.00	0.00	3.36
3359	4918	1.165270	CAACGGATCGCCTTTCCTTT	58.835	50.000	0.00	0.00	0.00	3.11
3360	4919	1.130561	CAACGGATCGCCTTTCCTTTC	59.869	52.381	0.00	0.00	0.00	2.62
3361	4920	0.392595	ACGGATCGCCTTTCCTTTCC	60.393	55.000	0.00	0.00	0.00	3.13
3368	4927	1.303282	CCTTTCCTTTCCCCCTCCG	59.697	63.158	0.00	0.00	0.00	4.63
3420	4986	1.410153	GGCTGGAAGGGCAACAATATG	59.590	52.381	0.00	0.00	39.74	1.78
3421	4987	1.202452	GCTGGAAGGGCAACAATATGC	60.202	52.381	0.00	0.00	45.67	3.14
3471	5038	2.666526	GGATCCGGCTCGCATTCC	60.667	66.667	0.00	0.00	0.00	3.01
3475	5042	1.816863	ATCCGGCTCGCATTCCGTAT	61.817	55.000	0.00	0.00	43.87	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	8.704849	AGTGTTGATATATTGTAGAGAGAGCT	57.295	34.615	0.00	0.00	0.00	4.09
48	49	1.136891	GTTAATGCCCATGCCAAGGTC	59.863	52.381	0.00	0.00	36.33	3.85
111	112	4.597004	ACAATGAATGTCTGGATGCTTCT	58.403	39.130	0.00	0.00	37.96	2.85
134	135	2.290323	ACCTCCGAATCTGTTTCCTTGG	60.290	50.000	0.00	0.00	0.00	3.61
222	223	7.678171	AGACCCAAAATAAGGAACAATACCATT	59.322	33.333	0.00	0.00	0.00	3.16
297	298	2.158234	AGTGGAGGAAAGTCCAGTCTCT	60.158	50.000	0.00	0.00	45.73	3.10
426	427	7.198390	CCAGATATTTTATTGGCTGTCAACAG	58.802	38.462	5.77	5.77	46.40	3.16
932	935	4.755266	TCAAGTAGATTACCTTCCAGGC	57.245	45.455	0.00	0.00	39.63	4.85
1168	1171	0.458543	AATAGTGGCGAGACAGCACG	60.459	55.000	0.00	0.00	39.27	5.34
1461	1468	2.681706	ACTGCATGTTCTTCAGACTCG	58.318	47.619	4.53	0.00	0.00	4.18
1496	1506	2.089980	CTCCAGGCTGATCAAGTTTGG	58.910	52.381	17.94	3.02	34.57	3.28
1531	1541	2.089980	GAGTGCCTGACATTCAGCAAT	58.910	47.619	0.00	0.00	42.98	3.56
1578	1588	2.544694	CGAGCATACAGTGATCACCCTC	60.545	54.545	22.21	15.37	43.38	4.30
1636	1646	8.637986	GTTGCCATTAACCATATATTCAAGGAA	58.362	33.333	0.00	0.00	0.00	3.36
1692	1708	2.372264	GGCCTTTTCAGATGATGCTCA	58.628	47.619	0.00	0.00	0.00	4.26
1787	1805	0.532573	ACAGTGTGTCATAGGAGGCG	59.467	55.000	0.00	0.00	0.00	5.52
2107	2969	2.659428	GCTCCCAAAGCCATATTCTGT	58.341	47.619	0.00	0.00	45.92	3.41
2445	3328	4.565564	GCGGTGACTTCAATATAAACGTCT	59.434	41.667	0.00	0.00	0.00	4.18
2454	3337	5.000591	TCTTTGATTGCGGTGACTTCAATA	58.999	37.500	3.64	0.00	33.34	1.90
2488	3371	2.727123	TTTTCTCAACCCTGCAGTGA	57.273	45.000	13.81	9.12	0.00	3.41
2590	4025	1.983972	AGCACGATTTCTGTCGAGAC	58.016	50.000	3.09	0.00	44.06	3.36
2597	4032	2.923655	ACACGACATAGCACGATTTCTG	59.076	45.455	0.00	0.00	0.00	3.02
2608	4043	4.547406	TGGAAGACGATACACGACATAG	57.453	45.455	0.00	0.00	45.77	2.23
2633	4068	7.809331	ACATGACGAACGTAGATTTACTTGTAA	59.191	33.333	0.00	0.00	0.00	2.41
2661	4096	1.878953	AGGTTGAACCACAGCTTACG	58.121	50.000	17.83	0.00	41.95	3.18
2700	4135	3.560068	AGTCGAAAGAAAAGTTCATGCGT	59.440	39.130	0.00	0.00	45.01	5.24
2702	4137	4.676924	CCAAGTCGAAAGAAAAGTTCATGC	59.323	41.667	0.00	0.00	45.01	4.06
2823	4349	9.632807	TTATTTAACAATTCAATGTACCACTGC	57.367	29.630	0.00	0.00	32.02	4.40
2843	4369	8.468399	ACGGGTTTCAACTTTCAAGTTTATTTA	58.532	29.630	2.01	0.00	46.52	1.40
2868	4394	5.580911	GAAAATGTGATTTCCTTGCACAC	57.419	39.130	0.00	0.00	44.30	3.82
2894	4420	9.677567	GTTTGTTGCTCTCTGATAAATTTGTAA	57.322	29.630	0.00	0.00	0.00	2.41
2941	4470	3.169924	GTCGCGCGTTCATCGTCA	61.170	61.111	30.98	3.31	42.13	4.35
2956	4485	0.966370	AGACCTCCCTGTGCTACGTC	60.966	60.000	0.00	0.00	0.00	4.34
2958	4487	1.513158	CAGACCTCCCTGTGCTACG	59.487	63.158	0.00	0.00	0.00	3.51
2960	4489	2.351244	CGCAGACCTCCCTGTGCTA	61.351	63.158	0.00	0.00	37.77	3.49
2974	4503	0.467384	ATCCACTCCATTCTCCGCAG	59.533	55.000	0.00	0.00	0.00	5.18
3006	4535	2.434884	CGCCGAGGCATTCAGTGT	60.435	61.111	15.03	0.00	42.06	3.55
3114	4655	0.755327	GATGGGGTATTGGGGTGCAC	60.755	60.000	8.80	8.80	0.00	4.57
3118	4659	1.919771	CGTGATGGGGTATTGGGGT	59.080	57.895	0.00	0.00	0.00	4.95
3120	4661	0.819259	CTGCGTGATGGGGTATTGGG	60.819	60.000	0.00	0.00	0.00	4.12
3121	4662	0.107214	ACTGCGTGATGGGGTATTGG	60.107	55.000	0.00	0.00	0.00	3.16
3122	4663	1.401552	CAACTGCGTGATGGGGTATTG	59.598	52.381	0.00	0.00	0.00	1.90
3123	4664	1.681780	CCAACTGCGTGATGGGGTATT	60.682	52.381	0.00	0.00	35.26	1.89
3124	4665	0.107214	CCAACTGCGTGATGGGGTAT	60.107	55.000	0.00	0.00	35.26	2.73
3181	4730	4.416738	GCAGGCTCCTCCACCCAC	62.417	72.222	0.00	0.00	37.29	4.61
3236	4794	1.909302	AGGATTGGGAAGAAGCGAAGA	59.091	47.619	0.00	0.00	0.00	2.87
3266	4824	0.909610	TCCTTCGTTCCTCTGCCCAT	60.910	55.000	0.00	0.00	0.00	4.00
3267	4825	1.535444	TCCTTCGTTCCTCTGCCCA	60.535	57.895	0.00	0.00	0.00	5.36
3277	4836	7.227873	TCTATCATCTATGACTCTCCTTCGTT	58.772	38.462	0.00	0.00	40.03	3.85
3279	4838	7.012327	GGATCTATCATCTATGACTCTCCTTCG	59.988	44.444	0.00	0.00	40.03	3.79
3287	4846	4.961730	GGCTGGGATCTATCATCTATGACT	59.038	45.833	0.00	0.00	40.03	3.41
3288	4847	4.713814	TGGCTGGGATCTATCATCTATGAC	59.286	45.833	0.00	0.00	40.03	3.06
3289	4848	4.951603	TGGCTGGGATCTATCATCTATGA	58.048	43.478	0.00	0.00	41.70	2.15
3290	4849	4.961099	TCTGGCTGGGATCTATCATCTATG	59.039	45.833	0.00	0.00	0.00	2.23
3292	4851	4.682021	TCTGGCTGGGATCTATCATCTA	57.318	45.455	0.00	0.00	0.00	1.98
3294	4853	3.773667	TCATCTGGCTGGGATCTATCATC	59.226	47.826	0.00	0.00	0.00	2.92
3295	4854	3.799719	TCATCTGGCTGGGATCTATCAT	58.200	45.455	0.00	0.00	0.00	2.45
3296	4855	3.264922	TCATCTGGCTGGGATCTATCA	57.735	47.619	0.00	0.00	0.00	2.15
3297	4856	3.773667	TCATCATCTGGCTGGGATCTATC	59.226	47.826	0.00	0.00	0.00	2.08
3323	4882	3.403558	GGAGGGGTCACTGGAGGC	61.404	72.222	0.00	0.00	0.00	4.70
3330	4889	1.221021	GATCCGTTGGAGGGGTCAC	59.779	63.158	0.00	0.00	33.61	3.67
3334	4893	4.547367	GGCGATCCGTTGGAGGGG	62.547	72.222	0.00	0.00	34.05	4.79
3341	4900	1.450025	GAAAGGAAAGGCGATCCGTT	58.550	50.000	11.24	11.24	42.03	4.44
3357	4916	3.250734	TTTCGGCGGAGGGGGAAA	61.251	61.111	7.21	0.00	0.00	3.13
3358	4917	3.712907	CTTTCGGCGGAGGGGGAA	61.713	66.667	7.21	0.00	0.00	3.97
3423	4989	2.753043	TCTGGTAGGGACGCCGAC	60.753	66.667	0.00	0.00	0.00	4.79
3424	4990	2.753043	GTCTGGTAGGGACGCCGA	60.753	66.667	0.00	0.00	0.00	5.54
3475	5042	2.680352	GTCACTCTGGGCTCCGGA	60.680	66.667	2.93	2.93	36.43	5.14

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.