Multiple sequence alignment - TraesCS7B01G261300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G261300 chr7B 100.000 5660 0 0 1 5660 481858076 481852417 0.000000e+00 10453
1 TraesCS7B01G261300 chr7B 90.687 3844 335 15 1186 5023 482078298 482074472 0.000000e+00 5094
2 TraesCS7B01G261300 chr7B 84.293 3177 479 15 900 4061 482684233 482687404 0.000000e+00 3085
3 TraesCS7B01G261300 chr7B 85.744 484 36 17 5056 5524 482074474 482074009 1.100000e-131 481
4 TraesCS7B01G261300 chr7B 80.690 435 76 5 4104 4531 482687597 482688030 1.180000e-86 331
5 TraesCS7B01G261300 chr7D 94.364 4276 169 27 536 4796 459753245 459749027 0.000000e+00 6495
6 TraesCS7B01G261300 chr7D 88.443 4162 410 39 724 4842 459790553 459786420 0.000000e+00 4955
7 TraesCS7B01G261300 chr7D 84.173 3197 470 28 889 4061 460279574 460282758 0.000000e+00 3068
8 TraesCS7B01G261300 chr7D 87.072 526 42 11 5056 5562 459786188 459785670 6.360000e-159 571
9 TraesCS7B01G261300 chr7D 90.654 428 28 6 5171 5587 459749027 459748601 4.950000e-155 558
10 TraesCS7B01G261300 chr7D 83.202 506 67 9 1051 1550 460273386 460273879 1.120000e-121 448
11 TraesCS7B01G261300 chr7D 81.735 438 72 5 4101 4531 460282865 460283301 5.390000e-95 359
12 TraesCS7B01G261300 chr7D 90.184 163 15 1 4867 5028 459786343 459786181 1.600000e-50 211
13 TraesCS7B01G261300 chr7A 95.070 3063 136 8 1964 5023 539928022 539931072 0.000000e+00 4806
14 TraesCS7B01G261300 chr7A 83.881 3195 476 34 889 4059 539326117 539322938 0.000000e+00 3011
15 TraesCS7B01G261300 chr7A 92.248 1419 78 9 513 1929 539926478 539927866 0.000000e+00 1982
16 TraesCS7B01G261300 chr7A 92.546 1261 92 2 2575 3834 539848162 539849421 0.000000e+00 1807
17 TraesCS7B01G261300 chr7A 93.050 777 49 4 3947 4718 539849420 539850196 0.000000e+00 1131
18 TraesCS7B01G261300 chr7A 85.086 523 45 14 5057 5558 539931070 539931580 2.350000e-138 503
19 TraesCS7B01G261300 chr7A 88.943 407 34 6 5171 5567 539850515 539850920 5.100000e-135 492
20 TraesCS7B01G261300 chr7A 81.556 450 76 6 4102 4547 539446518 539446072 1.160000e-96 364
21 TraesCS7B01G261300 chr7A 81.532 444 74 5 4101 4537 539322828 539322386 5.390000e-95 359
22 TraesCS7B01G261300 chr7A 97.727 88 1 1 373 459 539926374 539926461 3.530000e-32 150
23 TraesCS7B01G261300 chr2B 79.422 3047 570 41 1056 4063 784188642 784191670 0.000000e+00 2100
24 TraesCS7B01G261300 chr2B 95.225 377 15 1 1 374 744393344 744393720 1.360000e-165 593
25 TraesCS7B01G261300 chr2A 79.417 2983 560 43 1117 4060 764309067 764312034 0.000000e+00 2058
26 TraesCS7B01G261300 chr2A 77.952 2744 553 38 1354 4061 764256502 764259229 0.000000e+00 1668
27 TraesCS7B01G261300 chr2D 77.825 3062 615 37 1047 4061 638724172 638727216 0.000000e+00 1834
28 TraesCS7B01G261300 chrUn 96.277 376 11 2 1 373 241066514 241066139 1.040000e-171 614
29 TraesCS7B01G261300 chrUn 96.277 376 11 2 1 373 245289203 245288828 1.040000e-171 614
30 TraesCS7B01G261300 chrUn 96.277 376 11 2 1 373 315139203 315139578 1.040000e-171 614
31 TraesCS7B01G261300 chrUn 95.699 372 12 3 1 369 453241438 453241808 3.780000e-166 595
32 TraesCS7B01G261300 chr5B 96.021 377 12 2 1 374 9499279 9498903 1.350000e-170 610
33 TraesCS7B01G261300 chr4D 95.722 374 13 2 1 371 7099523 7099896 2.920000e-167 599
34 TraesCS7B01G261300 chr6D 95.699 372 12 4 1 369 55387211 55386841 3.780000e-166 595
35 TraesCS7B01G261300 chr1B 95.013 381 14 4 1 377 15656420 15656041 1.360000e-165 593


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G261300 chr7B 481852417 481858076 5659 True 10453.000000 10453 100.000000 1 5660 1 chr7B.!!$R1 5659
1 TraesCS7B01G261300 chr7B 482074009 482078298 4289 True 2787.500000 5094 88.215500 1186 5524 2 chr7B.!!$R2 4338
2 TraesCS7B01G261300 chr7B 482684233 482688030 3797 False 1708.000000 3085 82.491500 900 4531 2 chr7B.!!$F1 3631
3 TraesCS7B01G261300 chr7D 459748601 459753245 4644 True 3526.500000 6495 92.509000 536 5587 2 chr7D.!!$R1 5051
4 TraesCS7B01G261300 chr7D 459785670 459790553 4883 True 1912.333333 4955 88.566333 724 5562 3 chr7D.!!$R2 4838
5 TraesCS7B01G261300 chr7D 460279574 460283301 3727 False 1713.500000 3068 82.954000 889 4531 2 chr7D.!!$F2 3642
6 TraesCS7B01G261300 chr7A 539926374 539931580 5206 False 1860.250000 4806 92.532750 373 5558 4 chr7A.!!$F2 5185
7 TraesCS7B01G261300 chr7A 539322386 539326117 3731 True 1685.000000 3011 82.706500 889 4537 2 chr7A.!!$R2 3648
8 TraesCS7B01G261300 chr7A 539848162 539850920 2758 False 1143.333333 1807 91.513000 2575 5567 3 chr7A.!!$F1 2992
9 TraesCS7B01G261300 chr2B 784188642 784191670 3028 False 2100.000000 2100 79.422000 1056 4063 1 chr2B.!!$F2 3007
10 TraesCS7B01G261300 chr2A 764309067 764312034 2967 False 2058.000000 2058 79.417000 1117 4060 1 chr2A.!!$F2 2943
11 TraesCS7B01G261300 chr2A 764256502 764259229 2727 False 1668.000000 1668 77.952000 1354 4061 1 chr2A.!!$F1 2707
12 TraesCS7B01G261300 chr2D 638724172 638727216 3044 False 1834.000000 1834 77.825000 1047 4061 1 chr2D.!!$F1 3014

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.037590 TGGTGGGTCAATTTCGGAGG 59.962 55.000 0.0 0.0 0.00 4.30 F
850 860 0.101040 GTGTTGCTTCTTGTGCTGCA 59.899 50.000 0.0 0.0 0.00 4.41 F
911 922 0.242825 CCGTGAAAGGACGACTAGCA 59.757 55.000 0.0 0.0 42.10 3.49 F
1627 1676 0.960364 GATGCTCCGCAACCTTTCCA 60.960 55.000 0.0 0.0 43.62 3.53 F
1988 2191 2.826128 GGAATTTTTCTTCCCTTCGCCT 59.174 45.455 0.0 0.0 39.06 5.52 F
3794 4010 1.003118 CCATGAGGTTGGTCGGAGAAA 59.997 52.381 0.0 0.0 39.69 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1122 1162 1.137872 AGAGCATGGAGATCGGTGTTC 59.862 52.381 0.00 0.0 37.82 3.18 R
2752 2956 2.968574 CTGCTAAAGCTCCTGGGATAGA 59.031 50.000 3.26 0.0 42.66 1.98 R
2851 3055 0.318762 AGACACTGGGAAAGCGAGAC 59.681 55.000 0.00 0.0 0.00 3.36 R
3272 3476 2.147958 CATTGCAAAATGGCAGCTGTT 58.852 42.857 16.64 0.0 45.88 3.16 R
3858 4074 1.134946 GGAGGCACACATTGGTTATGC 59.865 52.381 0.00 0.0 37.81 3.14 R
5321 6052 0.253610 CCACCGCCCCTTTGTACATA 59.746 55.000 0.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.794270 CCGATGCGGTAACACCTG 58.206 61.111 0.00 0.00 42.73 4.00
18 19 2.461110 CCGATGCGGTAACACCTGC 61.461 63.158 0.00 5.57 42.73 4.85
19 20 2.798501 CGATGCGGTAACACCTGCG 61.799 63.158 7.36 0.00 39.47 5.18
20 21 2.435938 ATGCGGTAACACCTGCGG 60.436 61.111 7.36 0.00 39.47 5.69
21 22 3.248446 ATGCGGTAACACCTGCGGT 62.248 57.895 0.00 0.00 39.47 5.68
22 23 2.667199 GCGGTAACACCTGCGGTT 60.667 61.111 0.00 0.00 35.66 4.44
23 24 2.961669 GCGGTAACACCTGCGGTTG 61.962 63.158 0.00 0.00 35.66 3.77
24 25 2.951458 GGTAACACCTGCGGTTGC 59.049 61.111 0.00 0.00 43.20 4.17
25 26 2.622962 GGTAACACCTGCGGTTGCC 61.623 63.158 0.00 0.00 42.37 4.52
26 27 1.894756 GTAACACCTGCGGTTGCCA 60.895 57.895 0.00 0.00 41.78 4.92
27 28 1.894756 TAACACCTGCGGTTGCCAC 60.895 57.895 0.00 0.00 41.78 5.01
30 31 4.284550 ACCTGCGGTTGCCACCAT 62.285 61.111 7.86 0.00 44.53 3.55
31 32 3.443045 CCTGCGGTTGCCACCATC 61.443 66.667 7.86 0.00 44.53 3.51
32 33 3.443045 CTGCGGTTGCCACCATCC 61.443 66.667 7.86 0.00 44.53 3.51
34 35 4.740822 GCGGTTGCCACCATCCCT 62.741 66.667 7.86 0.00 44.53 4.20
35 36 2.035626 CGGTTGCCACCATCCCTT 59.964 61.111 7.86 0.00 44.53 3.95
36 37 2.046285 CGGTTGCCACCATCCCTTC 61.046 63.158 7.86 0.00 44.53 3.46
37 38 1.384191 GGTTGCCACCATCCCTTCT 59.616 57.895 1.17 0.00 43.61 2.85
38 39 0.251787 GGTTGCCACCATCCCTTCTT 60.252 55.000 1.17 0.00 43.61 2.52
39 40 0.890683 GTTGCCACCATCCCTTCTTG 59.109 55.000 0.00 0.00 0.00 3.02
40 41 0.251742 TTGCCACCATCCCTTCTTGG 60.252 55.000 0.00 0.00 39.02 3.61
41 42 1.139498 TGCCACCATCCCTTCTTGGA 61.139 55.000 0.00 0.00 39.18 3.53
42 43 0.394899 GCCACCATCCCTTCTTGGAG 60.395 60.000 0.00 0.00 37.96 3.86
43 44 0.257039 CCACCATCCCTTCTTGGAGG 59.743 60.000 0.00 0.00 37.96 4.30
50 51 1.296715 CCTTCTTGGAGGGTGTCGG 59.703 63.158 0.00 0.00 38.35 4.79
51 52 1.192146 CCTTCTTGGAGGGTGTCGGA 61.192 60.000 0.00 0.00 38.35 4.55
52 53 0.905357 CTTCTTGGAGGGTGTCGGAT 59.095 55.000 0.00 0.00 0.00 4.18
53 54 0.613260 TTCTTGGAGGGTGTCGGATG 59.387 55.000 0.00 0.00 0.00 3.51
54 55 0.544357 TCTTGGAGGGTGTCGGATGT 60.544 55.000 0.00 0.00 0.00 3.06
55 56 1.191535 CTTGGAGGGTGTCGGATGTA 58.808 55.000 0.00 0.00 0.00 2.29
56 57 1.762957 CTTGGAGGGTGTCGGATGTAT 59.237 52.381 0.00 0.00 0.00 2.29
57 58 1.410004 TGGAGGGTGTCGGATGTATC 58.590 55.000 0.00 0.00 0.00 2.24
58 59 0.680061 GGAGGGTGTCGGATGTATCC 59.320 60.000 0.63 0.63 43.65 2.59
71 72 4.278975 GATGTATCCATCCCTCACTTCC 57.721 50.000 0.00 0.00 41.43 3.46
72 73 3.421394 TGTATCCATCCCTCACTTCCT 57.579 47.619 0.00 0.00 0.00 3.36
73 74 3.736094 TGTATCCATCCCTCACTTCCTT 58.264 45.455 0.00 0.00 0.00 3.36
74 75 4.111577 TGTATCCATCCCTCACTTCCTTT 58.888 43.478 0.00 0.00 0.00 3.11
75 76 3.941704 ATCCATCCCTCACTTCCTTTC 57.058 47.619 0.00 0.00 0.00 2.62
76 77 1.555075 TCCATCCCTCACTTCCTTTCG 59.445 52.381 0.00 0.00 0.00 3.46
77 78 1.373570 CATCCCTCACTTCCTTTCGC 58.626 55.000 0.00 0.00 0.00 4.70
78 79 0.108138 ATCCCTCACTTCCTTTCGCG 60.108 55.000 0.00 0.00 0.00 5.87
79 80 1.004918 CCCTCACTTCCTTTCGCGT 60.005 57.895 5.77 0.00 0.00 6.01
80 81 1.291877 CCCTCACTTCCTTTCGCGTG 61.292 60.000 5.77 0.00 0.00 5.34
81 82 1.493311 CTCACTTCCTTTCGCGTGC 59.507 57.895 5.77 0.00 0.00 5.34
82 83 1.901650 CTCACTTCCTTTCGCGTGCC 61.902 60.000 5.77 0.00 0.00 5.01
83 84 3.041940 ACTTCCTTTCGCGTGCCG 61.042 61.111 5.77 0.00 38.61 5.69
84 85 3.788766 CTTCCTTTCGCGTGCCGG 61.789 66.667 5.77 0.00 37.59 6.13
104 105 3.828657 GGAAACCCTAGGACACGTC 57.171 57.895 11.48 0.00 0.00 4.34
126 127 2.429236 CAGCAGCGTCGTCGACTT 60.429 61.111 22.18 8.45 39.71 3.01
127 128 2.126812 AGCAGCGTCGTCGACTTC 60.127 61.111 22.18 13.77 39.71 3.01
128 129 3.524759 GCAGCGTCGTCGACTTCG 61.525 66.667 22.18 17.64 39.71 3.79
131 132 2.874780 GCGTCGTCGACTTCGCAT 60.875 61.111 32.58 0.00 46.40 4.73
132 133 2.836306 GCGTCGTCGACTTCGCATC 61.836 63.158 32.58 15.10 46.40 3.91
133 134 2.215604 CGTCGTCGACTTCGCATCC 61.216 63.158 22.18 0.00 39.71 3.51
134 135 1.872679 GTCGTCGACTTCGCATCCC 60.873 63.158 18.09 0.00 39.60 3.85
135 136 2.044555 TCGTCGACTTCGCATCCCT 61.045 57.895 14.70 0.00 39.60 4.20
136 137 1.153823 CGTCGACTTCGCATCCCTT 60.154 57.895 14.70 0.00 39.60 3.95
137 138 1.413767 CGTCGACTTCGCATCCCTTG 61.414 60.000 14.70 0.00 39.60 3.61
146 147 4.651867 CATCCCTTGCTGGAGGTG 57.348 61.111 0.00 0.00 37.96 4.00
147 148 1.751927 CATCCCTTGCTGGAGGTGC 60.752 63.158 0.00 0.00 37.96 5.01
148 149 1.927527 ATCCCTTGCTGGAGGTGCT 60.928 57.895 0.00 0.00 37.96 4.40
149 150 2.207501 ATCCCTTGCTGGAGGTGCTG 62.208 60.000 0.00 0.00 37.96 4.41
150 151 3.060615 CCTTGCTGGAGGTGCTGC 61.061 66.667 0.00 0.00 38.35 5.25
151 152 2.033757 CTTGCTGGAGGTGCTGCT 59.966 61.111 0.00 0.00 0.00 4.24
152 153 1.602888 CTTGCTGGAGGTGCTGCTT 60.603 57.895 0.00 0.00 0.00 3.91
153 154 1.863662 CTTGCTGGAGGTGCTGCTTG 61.864 60.000 0.00 0.00 0.00 4.01
154 155 3.060615 GCTGGAGGTGCTGCTTGG 61.061 66.667 0.00 0.00 0.00 3.61
155 156 2.433446 CTGGAGGTGCTGCTTGGT 59.567 61.111 0.00 0.00 0.00 3.67
156 157 1.679311 CTGGAGGTGCTGCTTGGTA 59.321 57.895 0.00 0.00 0.00 3.25
157 158 0.674895 CTGGAGGTGCTGCTTGGTAC 60.675 60.000 0.00 0.00 0.00 3.34
158 159 1.741770 GGAGGTGCTGCTTGGTACG 60.742 63.158 0.00 0.00 0.00 3.67
159 160 2.358737 AGGTGCTGCTTGGTACGC 60.359 61.111 0.00 0.00 0.00 4.42
160 161 3.788766 GGTGCTGCTTGGTACGCG 61.789 66.667 3.53 3.53 0.00 6.01
161 162 3.788766 GTGCTGCTTGGTACGCGG 61.789 66.667 12.47 0.00 36.84 6.46
181 182 3.775654 GGTCGGAGCCTGGGTCTG 61.776 72.222 25.27 25.27 37.73 3.51
182 183 2.997897 GTCGGAGCCTGGGTCTGT 60.998 66.667 28.52 0.00 37.64 3.41
183 184 2.997315 TCGGAGCCTGGGTCTGTG 60.997 66.667 28.52 17.41 37.64 3.66
184 185 4.087892 CGGAGCCTGGGTCTGTGG 62.088 72.222 23.43 8.94 32.48 4.17
185 186 2.930562 GGAGCCTGGGTCTGTGGT 60.931 66.667 23.77 0.00 0.00 4.16
186 187 2.348998 GAGCCTGGGTCTGTGGTG 59.651 66.667 18.30 0.00 0.00 4.17
187 188 3.252284 AGCCTGGGTCTGTGGTGG 61.252 66.667 0.00 0.00 0.00 4.61
188 189 4.351054 GCCTGGGTCTGTGGTGGG 62.351 72.222 0.00 0.00 0.00 4.61
189 190 2.854032 CCTGGGTCTGTGGTGGGT 60.854 66.667 0.00 0.00 0.00 4.51
190 191 2.750350 CTGGGTCTGTGGTGGGTC 59.250 66.667 0.00 0.00 0.00 4.46
191 192 2.040359 TGGGTCTGTGGTGGGTCA 60.040 61.111 0.00 0.00 0.00 4.02
192 193 1.694525 TGGGTCTGTGGTGGGTCAA 60.695 57.895 0.00 0.00 0.00 3.18
193 194 1.065410 TGGGTCTGTGGTGGGTCAAT 61.065 55.000 0.00 0.00 0.00 2.57
194 195 0.112412 GGGTCTGTGGTGGGTCAATT 59.888 55.000 0.00 0.00 0.00 2.32
195 196 1.480498 GGGTCTGTGGTGGGTCAATTT 60.480 52.381 0.00 0.00 0.00 1.82
196 197 1.886542 GGTCTGTGGTGGGTCAATTTC 59.113 52.381 0.00 0.00 0.00 2.17
197 198 1.535462 GTCTGTGGTGGGTCAATTTCG 59.465 52.381 0.00 0.00 0.00 3.46
198 199 0.881118 CTGTGGTGGGTCAATTTCGG 59.119 55.000 0.00 0.00 0.00 4.30
199 200 0.474614 TGTGGTGGGTCAATTTCGGA 59.525 50.000 0.00 0.00 0.00 4.55
200 201 1.165270 GTGGTGGGTCAATTTCGGAG 58.835 55.000 0.00 0.00 0.00 4.63
201 202 0.037590 TGGTGGGTCAATTTCGGAGG 59.962 55.000 0.00 0.00 0.00 4.30
202 203 0.679960 GGTGGGTCAATTTCGGAGGG 60.680 60.000 0.00 0.00 0.00 4.30
203 204 1.001393 TGGGTCAATTTCGGAGGGC 60.001 57.895 0.00 0.00 0.00 5.19
204 205 2.112815 GGGTCAATTTCGGAGGGCG 61.113 63.158 0.00 0.00 0.00 6.13
205 206 2.761195 GGTCAATTTCGGAGGGCGC 61.761 63.158 0.00 0.00 0.00 6.53
206 207 2.038269 GTCAATTTCGGAGGGCGCA 61.038 57.895 10.83 0.00 0.00 6.09
207 208 1.745115 TCAATTTCGGAGGGCGCAG 60.745 57.895 10.83 0.00 0.00 5.18
232 233 2.746277 GGGTCATCCGCGCTTTGT 60.746 61.111 5.56 0.00 33.83 2.83
233 234 2.750888 GGGTCATCCGCGCTTTGTC 61.751 63.158 5.56 0.00 33.83 3.18
234 235 2.395690 GTCATCCGCGCTTTGTCG 59.604 61.111 5.56 0.00 0.00 4.35
235 236 2.092291 GTCATCCGCGCTTTGTCGA 61.092 57.895 5.56 0.00 0.00 4.20
236 237 1.805539 TCATCCGCGCTTTGTCGAG 60.806 57.895 5.56 0.00 0.00 4.04
237 238 3.188786 ATCCGCGCTTTGTCGAGC 61.189 61.111 5.56 0.00 39.29 5.03
238 239 3.649277 ATCCGCGCTTTGTCGAGCT 62.649 57.895 5.56 0.00 40.52 4.09
239 240 4.139420 CCGCGCTTTGTCGAGCTG 62.139 66.667 5.56 0.00 40.52 4.24
240 241 4.783841 CGCGCTTTGTCGAGCTGC 62.784 66.667 5.56 0.00 40.52 5.25
241 242 4.451652 GCGCTTTGTCGAGCTGCC 62.452 66.667 0.00 0.00 40.52 4.85
242 243 4.139420 CGCTTTGTCGAGCTGCCG 62.139 66.667 0.00 0.00 40.52 5.69
243 244 3.044305 GCTTTGTCGAGCTGCCGT 61.044 61.111 0.00 0.00 39.57 5.68
244 245 2.607892 GCTTTGTCGAGCTGCCGTT 61.608 57.895 0.00 0.00 39.57 4.44
245 246 1.205064 CTTTGTCGAGCTGCCGTTG 59.795 57.895 0.00 0.00 0.00 4.10
246 247 1.498865 CTTTGTCGAGCTGCCGTTGT 61.499 55.000 0.00 0.00 0.00 3.32
247 248 1.092921 TTTGTCGAGCTGCCGTTGTT 61.093 50.000 0.00 0.00 0.00 2.83
248 249 1.771073 TTGTCGAGCTGCCGTTGTTG 61.771 55.000 0.00 0.00 0.00 3.33
249 250 2.664851 TCGAGCTGCCGTTGTTGG 60.665 61.111 0.00 0.00 0.00 3.77
285 286 8.986477 TTCTTTGTTCTTTCTCTTTCTTTTGG 57.014 30.769 0.00 0.00 0.00 3.28
286 287 7.547227 TCTTTGTTCTTTCTCTTTCTTTTGGG 58.453 34.615 0.00 0.00 0.00 4.12
287 288 5.262588 TGTTCTTTCTCTTTCTTTTGGGC 57.737 39.130 0.00 0.00 0.00 5.36
288 289 4.956075 TGTTCTTTCTCTTTCTTTTGGGCT 59.044 37.500 0.00 0.00 0.00 5.19
289 290 5.422012 TGTTCTTTCTCTTTCTTTTGGGCTT 59.578 36.000 0.00 0.00 0.00 4.35
290 291 5.520376 TCTTTCTCTTTCTTTTGGGCTTG 57.480 39.130 0.00 0.00 0.00 4.01
291 292 4.956075 TCTTTCTCTTTCTTTTGGGCTTGT 59.044 37.500 0.00 0.00 0.00 3.16
292 293 5.422012 TCTTTCTCTTTCTTTTGGGCTTGTT 59.578 36.000 0.00 0.00 0.00 2.83
293 294 4.654091 TCTCTTTCTTTTGGGCTTGTTG 57.346 40.909 0.00 0.00 0.00 3.33
294 295 4.023291 TCTCTTTCTTTTGGGCTTGTTGT 58.977 39.130 0.00 0.00 0.00 3.32
295 296 4.114794 CTCTTTCTTTTGGGCTTGTTGTG 58.885 43.478 0.00 0.00 0.00 3.33
296 297 2.307934 TTCTTTTGGGCTTGTTGTGC 57.692 45.000 0.00 0.00 0.00 4.57
297 298 1.484038 TCTTTTGGGCTTGTTGTGCT 58.516 45.000 0.00 0.00 0.00 4.40
298 299 1.830477 TCTTTTGGGCTTGTTGTGCTT 59.170 42.857 0.00 0.00 0.00 3.91
299 300 2.159114 TCTTTTGGGCTTGTTGTGCTTC 60.159 45.455 0.00 0.00 0.00 3.86
300 301 1.484038 TTTGGGCTTGTTGTGCTTCT 58.516 45.000 0.00 0.00 0.00 2.85
301 302 1.032014 TTGGGCTTGTTGTGCTTCTC 58.968 50.000 0.00 0.00 0.00 2.87
302 303 1.165907 TGGGCTTGTTGTGCTTCTCG 61.166 55.000 0.00 0.00 0.00 4.04
303 304 1.081840 GGCTTGTTGTGCTTCTCGC 60.082 57.895 0.00 0.00 39.77 5.03
304 305 1.081840 GCTTGTTGTGCTTCTCGCC 60.082 57.895 0.00 0.00 38.05 5.54
305 306 1.576421 CTTGTTGTGCTTCTCGCCC 59.424 57.895 0.00 0.00 38.05 6.13
306 307 2.175184 CTTGTTGTGCTTCTCGCCCG 62.175 60.000 0.00 0.00 38.05 6.13
307 308 2.357034 GTTGTGCTTCTCGCCCGA 60.357 61.111 0.00 0.00 38.05 5.14
308 309 2.048222 TTGTGCTTCTCGCCCGAG 60.048 61.111 11.24 11.24 43.21 4.63
309 310 4.742201 TGTGCTTCTCGCCCGAGC 62.742 66.667 12.54 3.39 41.71 5.03
310 311 4.742201 GTGCTTCTCGCCCGAGCA 62.742 66.667 12.54 5.96 43.56 4.26
311 312 4.742201 TGCTTCTCGCCCGAGCAC 62.742 66.667 12.54 5.39 41.15 4.40
312 313 4.443266 GCTTCTCGCCCGAGCACT 62.443 66.667 12.54 0.00 41.71 4.40
313 314 2.202676 CTTCTCGCCCGAGCACTC 60.203 66.667 12.54 0.00 41.71 3.51
314 315 3.708220 CTTCTCGCCCGAGCACTCC 62.708 68.421 12.54 0.00 41.71 3.85
315 316 4.742649 TCTCGCCCGAGCACTCCT 62.743 66.667 12.54 0.00 41.71 3.69
316 317 4.200283 CTCGCCCGAGCACTCCTC 62.200 72.222 4.63 0.00 39.83 3.71
317 318 4.742649 TCGCCCGAGCACTCCTCT 62.743 66.667 0.00 0.00 39.83 3.69
318 319 4.504916 CGCCCGAGCACTCCTCTG 62.505 72.222 0.00 0.00 39.83 3.35
319 320 3.386237 GCCCGAGCACTCCTCTGT 61.386 66.667 0.00 0.00 38.49 3.41
320 321 2.052690 GCCCGAGCACTCCTCTGTA 61.053 63.158 0.00 0.00 38.49 2.74
321 322 1.395826 GCCCGAGCACTCCTCTGTAT 61.396 60.000 0.00 0.00 38.49 2.29
322 323 0.671251 CCCGAGCACTCCTCTGTATC 59.329 60.000 0.00 0.00 38.49 2.24
323 324 0.309302 CCGAGCACTCCTCTGTATCG 59.691 60.000 0.00 0.00 38.49 2.92
324 325 0.309302 CGAGCACTCCTCTGTATCGG 59.691 60.000 0.00 0.00 38.49 4.18
325 326 1.394618 GAGCACTCCTCTGTATCGGT 58.605 55.000 0.00 0.00 37.60 4.69
326 327 1.066303 GAGCACTCCTCTGTATCGGTG 59.934 57.143 0.00 0.00 37.60 4.94
327 328 0.818296 GCACTCCTCTGTATCGGTGT 59.182 55.000 0.00 0.00 0.00 4.16
328 329 1.204941 GCACTCCTCTGTATCGGTGTT 59.795 52.381 0.00 0.00 0.00 3.32
329 330 2.881074 CACTCCTCTGTATCGGTGTTG 58.119 52.381 0.00 0.00 0.00 3.33
330 331 1.825474 ACTCCTCTGTATCGGTGTTGG 59.175 52.381 0.00 0.00 0.00 3.77
331 332 1.825474 CTCCTCTGTATCGGTGTTGGT 59.175 52.381 0.00 0.00 0.00 3.67
332 333 2.233922 CTCCTCTGTATCGGTGTTGGTT 59.766 50.000 0.00 0.00 0.00 3.67
333 334 2.028476 TCCTCTGTATCGGTGTTGGTTG 60.028 50.000 0.00 0.00 0.00 3.77
334 335 1.732259 CTCTGTATCGGTGTTGGTTGC 59.268 52.381 0.00 0.00 0.00 4.17
335 336 1.346395 TCTGTATCGGTGTTGGTTGCT 59.654 47.619 0.00 0.00 0.00 3.91
336 337 2.151202 CTGTATCGGTGTTGGTTGCTT 58.849 47.619 0.00 0.00 0.00 3.91
337 338 2.552315 CTGTATCGGTGTTGGTTGCTTT 59.448 45.455 0.00 0.00 0.00 3.51
338 339 2.292016 TGTATCGGTGTTGGTTGCTTTG 59.708 45.455 0.00 0.00 0.00 2.77
339 340 1.398692 ATCGGTGTTGGTTGCTTTGT 58.601 45.000 0.00 0.00 0.00 2.83
340 341 2.039818 TCGGTGTTGGTTGCTTTGTA 57.960 45.000 0.00 0.00 0.00 2.41
341 342 2.366533 TCGGTGTTGGTTGCTTTGTAA 58.633 42.857 0.00 0.00 0.00 2.41
342 343 2.952978 TCGGTGTTGGTTGCTTTGTAAT 59.047 40.909 0.00 0.00 0.00 1.89
343 344 4.135306 TCGGTGTTGGTTGCTTTGTAATA 58.865 39.130 0.00 0.00 0.00 0.98
344 345 4.023878 TCGGTGTTGGTTGCTTTGTAATAC 60.024 41.667 0.00 0.00 0.00 1.89
345 346 4.261238 CGGTGTTGGTTGCTTTGTAATACA 60.261 41.667 0.00 0.00 0.00 2.29
346 347 5.593010 GGTGTTGGTTGCTTTGTAATACAA 58.407 37.500 1.08 1.08 36.11 2.41
347 348 6.043411 GGTGTTGGTTGCTTTGTAATACAAA 58.957 36.000 16.57 16.57 44.91 2.83
359 360 7.619512 TTTGTAATACAAAGTGGGGGAAAAT 57.380 32.000 13.93 0.00 42.55 1.82
360 361 6.844097 TGTAATACAAAGTGGGGGAAAATC 57.156 37.500 0.00 0.00 0.00 2.17
361 362 5.717654 TGTAATACAAAGTGGGGGAAAATCC 59.282 40.000 0.00 0.00 35.23 3.01
362 363 4.692523 ATACAAAGTGGGGGAAAATCCT 57.307 40.909 0.00 0.00 36.57 3.24
363 364 3.344535 ACAAAGTGGGGGAAAATCCTT 57.655 42.857 0.00 0.00 36.57 3.36
364 365 3.664320 ACAAAGTGGGGGAAAATCCTTT 58.336 40.909 0.00 0.00 36.57 3.11
365 366 4.044308 ACAAAGTGGGGGAAAATCCTTTT 58.956 39.130 0.00 0.00 36.57 2.27
366 367 4.476846 ACAAAGTGGGGGAAAATCCTTTTT 59.523 37.500 0.00 0.00 37.75 1.94
367 368 4.974645 AAGTGGGGGAAAATCCTTTTTC 57.025 40.909 3.21 3.21 46.58 2.29
419 421 1.257743 TTCTCTGGTCTCCACTTCCG 58.742 55.000 0.00 0.00 0.00 4.30
459 461 2.171659 TCTGGTTAACTGTCAAGTGGCA 59.828 45.455 5.42 0.00 36.51 4.92
461 463 3.357203 TGGTTAACTGTCAAGTGGCAAA 58.643 40.909 5.42 0.00 36.51 3.68
462 464 3.380004 TGGTTAACTGTCAAGTGGCAAAG 59.620 43.478 5.42 0.00 36.51 2.77
463 465 3.372060 GTTAACTGTCAAGTGGCAAAGC 58.628 45.455 0.00 0.00 36.51 3.51
476 478 2.951726 GGCAAAGCCTTGATGACTTTC 58.048 47.619 0.00 0.00 46.69 2.62
477 479 2.297033 GGCAAAGCCTTGATGACTTTCA 59.703 45.455 0.00 0.00 46.69 2.69
478 480 3.243839 GGCAAAGCCTTGATGACTTTCAA 60.244 43.478 0.00 0.00 46.69 2.69
512 514 3.252944 TCATTCTGCATCGCAAGTTTCAA 59.747 39.130 0.00 0.00 38.41 2.69
513 515 3.706802 TTCTGCATCGCAAGTTTCAAA 57.293 38.095 0.00 0.00 38.41 2.69
514 516 3.272439 TCTGCATCGCAAGTTTCAAAG 57.728 42.857 0.00 0.00 38.41 2.77
515 517 2.877786 TCTGCATCGCAAGTTTCAAAGA 59.122 40.909 0.00 0.00 38.41 2.52
516 518 3.503363 TCTGCATCGCAAGTTTCAAAGAT 59.497 39.130 0.00 0.00 38.41 2.40
517 519 4.022935 TCTGCATCGCAAGTTTCAAAGATT 60.023 37.500 0.00 0.00 38.41 2.40
518 520 4.229096 TGCATCGCAAGTTTCAAAGATTC 58.771 39.130 0.00 0.00 34.76 2.52
519 521 4.022935 TGCATCGCAAGTTTCAAAGATTCT 60.023 37.500 0.00 0.00 34.76 2.40
712 716 6.950842 TGTCCACATGTAGATCAAGAATTCT 58.049 36.000 0.88 0.88 0.00 2.40
714 718 8.200120 TGTCCACATGTAGATCAAGAATTCTAG 58.800 37.037 8.75 0.00 0.00 2.43
754 759 2.801699 CGGGCGACTATAAAGATGCACA 60.802 50.000 0.00 0.00 31.92 4.57
834 844 1.746615 GCCTGCATCACCATCGTGT 60.747 57.895 0.00 0.00 41.09 4.49
850 860 0.101040 GTGTTGCTTCTTGTGCTGCA 59.899 50.000 0.00 0.00 0.00 4.41
895 906 2.357034 CGTAAGTGCTGGTGCCGT 60.357 61.111 0.00 0.00 38.71 5.68
907 918 1.300697 GTGCCGTGAAAGGACGACT 60.301 57.895 0.00 0.00 42.10 4.18
911 922 0.242825 CCGTGAAAGGACGACTAGCA 59.757 55.000 0.00 0.00 42.10 3.49
1122 1162 1.468520 ACGGCACTCCAAAATGATTCG 59.531 47.619 0.00 0.00 0.00 3.34
1627 1676 0.960364 GATGCTCCGCAACCTTTCCA 60.960 55.000 0.00 0.00 43.62 3.53
1988 2191 2.826128 GGAATTTTTCTTCCCTTCGCCT 59.174 45.455 0.00 0.00 39.06 5.52
2652 2856 4.981806 TCTTCCAAACCTGTTTGTCTTG 57.018 40.909 18.49 6.29 46.19 3.02
2683 2887 6.539649 TCAAGAACAAACTTTACGGATCAG 57.460 37.500 0.00 0.00 0.00 2.90
2717 2921 5.297547 TGTTGGTAATCTGAGTCAACTGAC 58.702 41.667 9.89 1.40 45.08 3.51
2851 3055 4.646572 ACCAAAGGAGCTCTTTACTCTTG 58.353 43.478 11.97 5.91 43.32 3.02
2856 3060 3.442273 AGGAGCTCTTTACTCTTGTCTCG 59.558 47.826 14.64 0.00 34.46 4.04
3219 3423 4.461781 GCAGATGGGATATTTCAGAATGGG 59.538 45.833 0.00 0.00 36.16 4.00
3272 3476 2.212812 TGTACCAGCATTCCATTGCA 57.787 45.000 0.00 0.00 45.23 4.08
3537 3747 4.881850 GGAAAATATGGGTCTGTGTACAGG 59.118 45.833 11.76 0.00 43.91 4.00
3773 3986 4.421365 TTGGCTCCATCCAACAGC 57.579 55.556 0.00 0.00 40.92 4.40
3788 4004 1.746615 CAGCCCATGAGGTTGGTCG 60.747 63.158 8.55 0.00 42.94 4.79
3794 4010 1.003118 CCATGAGGTTGGTCGGAGAAA 59.997 52.381 0.00 0.00 39.69 2.52
3858 4074 3.351020 GCTGCTGCTTTGGATTATCTG 57.649 47.619 8.53 0.00 36.03 2.90
4005 4230 5.817988 TCTTCGGACATTCATAGTTCTACG 58.182 41.667 0.00 0.00 0.00 3.51
4537 4921 0.478072 TTGCAGGGCTGAGGAAAAGA 59.522 50.000 0.00 0.00 0.00 2.52
4778 5419 9.630098 AAAGTCTATTGTGTATGCAAATTTCAG 57.370 29.630 0.00 0.00 31.63 3.02
4791 5432 2.426842 ATTTCAGCCAACCTAGCTCC 57.573 50.000 0.00 0.00 38.95 4.70
4801 5442 4.751028 GCCAACCTAGCTCCATGGAATAAT 60.751 45.833 17.00 4.47 32.82 1.28
4802 5443 4.763793 CCAACCTAGCTCCATGGAATAATG 59.236 45.833 17.00 4.62 32.82 1.90
4956 5650 5.163713 GCTCTCTGCTTAAAAGGGTGTATTG 60.164 44.000 0.00 0.00 38.95 1.90
5020 5715 7.015389 GGCAGTAGATAAAGGTAGTAAGTCCAT 59.985 40.741 0.00 0.00 0.00 3.41
5021 5716 8.422566 GCAGTAGATAAAGGTAGTAAGTCCATT 58.577 37.037 0.00 0.00 0.00 3.16
5032 5727 9.726438 AGGTAGTAAGTCCATTTCATATATTGC 57.274 33.333 0.00 0.00 0.00 3.56
5033 5728 8.947115 GGTAGTAAGTCCATTTCATATATTGCC 58.053 37.037 0.00 0.00 0.00 4.52
5034 5729 9.502091 GTAGTAAGTCCATTTCATATATTGCCA 57.498 33.333 0.00 0.00 0.00 4.92
5035 5730 8.627208 AGTAAGTCCATTTCATATATTGCCAG 57.373 34.615 0.00 0.00 0.00 4.85
5036 5731 6.906157 AAGTCCATTTCATATATTGCCAGG 57.094 37.500 0.00 0.00 0.00 4.45
5037 5732 4.768968 AGTCCATTTCATATATTGCCAGGC 59.231 41.667 3.66 3.66 0.00 4.85
5038 5733 4.523943 GTCCATTTCATATATTGCCAGGCA 59.476 41.667 11.22 11.22 36.47 4.75
5039 5734 5.186409 GTCCATTTCATATATTGCCAGGCAT 59.814 40.000 17.09 8.29 38.76 4.40
5040 5735 5.186215 TCCATTTCATATATTGCCAGGCATG 59.814 40.000 17.09 10.56 38.76 4.06
5041 5736 4.524316 TTTCATATATTGCCAGGCATGC 57.476 40.909 17.09 9.90 38.76 4.06
5042 5737 3.157750 TCATATATTGCCAGGCATGCA 57.842 42.857 17.09 0.00 38.76 3.96
5043 5738 3.703921 TCATATATTGCCAGGCATGCAT 58.296 40.909 17.09 10.32 38.76 3.96
5044 5739 4.857679 TCATATATTGCCAGGCATGCATA 58.142 39.130 17.09 10.99 38.76 3.14
5045 5740 5.451354 TCATATATTGCCAGGCATGCATAT 58.549 37.500 17.09 17.43 38.76 1.78
5046 5741 6.603224 TCATATATTGCCAGGCATGCATATA 58.397 36.000 17.09 18.98 38.76 0.86
5047 5742 7.235804 TCATATATTGCCAGGCATGCATATAT 58.764 34.615 21.82 21.82 38.76 0.86
5048 5743 7.726738 TCATATATTGCCAGGCATGCATATATT 59.273 33.333 23.62 13.12 38.76 1.28
5049 5744 6.801718 ATATTGCCAGGCATGCATATATTT 57.198 33.333 17.09 0.00 38.76 1.40
5050 5745 4.524316 TTGCCAGGCATGCATATATTTC 57.476 40.909 17.09 0.00 38.76 2.17
5051 5746 3.770046 TGCCAGGCATGCATATATTTCT 58.230 40.909 21.36 1.02 31.71 2.52
5052 5747 3.508402 TGCCAGGCATGCATATATTTCTG 59.492 43.478 21.36 14.00 31.71 3.02
5053 5748 3.119245 GCCAGGCATGCATATATTTCTGG 60.119 47.826 23.27 23.27 42.30 3.86
5054 5749 4.084287 CCAGGCATGCATATATTTCTGGT 58.916 43.478 21.36 0.00 36.66 4.00
5055 5750 4.525487 CCAGGCATGCATATATTTCTGGTT 59.475 41.667 21.36 0.00 36.66 3.67
5083 5779 3.782889 AACAGAAATATTGAAGCCCGC 57.217 42.857 0.00 0.00 0.00 6.13
5116 5812 8.516811 AGAACTGGTTATATAATCTTAACGCG 57.483 34.615 3.53 3.53 30.66 6.01
5149 5850 1.651737 AACCAGGTTAAATTGCCCCC 58.348 50.000 1.71 0.00 0.00 5.40
5293 6024 3.788227 TGGCTTTCCAAGTCTGTACAT 57.212 42.857 0.00 0.00 39.99 2.29
5295 6026 5.435686 TGGCTTTCCAAGTCTGTACATAT 57.564 39.130 0.00 0.00 39.99 1.78
5299 6030 6.821665 GGCTTTCCAAGTCTGTACATATACAA 59.178 38.462 0.00 0.00 40.84 2.41
5300 6031 7.011482 GGCTTTCCAAGTCTGTACATATACAAG 59.989 40.741 0.00 0.00 40.84 3.16
5302 6033 9.823647 CTTTCCAAGTCTGTACATATACAAGAT 57.176 33.333 0.00 0.00 40.84 2.40
5361 6096 2.575532 CTGCTCTGAAACCTTTGGTCA 58.424 47.619 0.00 0.00 33.12 4.02
5365 6100 3.792124 GCTCTGAAACCTTTGGTCAAACG 60.792 47.826 0.00 0.00 33.12 3.60
5394 6129 1.224592 GTTCATGCCGATCCAGGGT 59.775 57.895 0.00 0.00 0.00 4.34
5536 6271 1.000019 TCGGGTTCGAGGTCAGGAT 60.000 57.895 0.00 0.00 40.88 3.24
5550 6285 4.163839 AGGTCAGGATTCAGGATTGAAGAG 59.836 45.833 0.00 0.00 45.89 2.85
5562 6297 0.891373 TTGAAGAGAGCGAGAGGGTG 59.109 55.000 0.00 0.00 0.00 4.61
5567 6302 1.063567 AGAGAGCGAGAGGGTGGTAAT 60.064 52.381 0.00 0.00 0.00 1.89
5592 6327 2.750815 CGAAAGCAACTACGGAGGG 58.249 57.895 0.00 0.00 0.00 4.30
5593 6328 0.739813 CGAAAGCAACTACGGAGGGG 60.740 60.000 0.00 0.00 0.00 4.79
5594 6329 0.611714 GAAAGCAACTACGGAGGGGA 59.388 55.000 0.00 0.00 0.00 4.81
5595 6330 1.002773 GAAAGCAACTACGGAGGGGAA 59.997 52.381 0.00 0.00 0.00 3.97
5596 6331 1.286248 AAGCAACTACGGAGGGGAAT 58.714 50.000 0.00 0.00 0.00 3.01
5597 6332 1.286248 AGCAACTACGGAGGGGAATT 58.714 50.000 0.00 0.00 0.00 2.17
5598 6333 1.633945 AGCAACTACGGAGGGGAATTT 59.366 47.619 0.00 0.00 0.00 1.82
5599 6334 2.041216 AGCAACTACGGAGGGGAATTTT 59.959 45.455 0.00 0.00 0.00 1.82
5600 6335 2.823747 GCAACTACGGAGGGGAATTTTT 59.176 45.455 0.00 0.00 0.00 1.94
5601 6336 3.366985 GCAACTACGGAGGGGAATTTTTG 60.367 47.826 0.00 0.00 0.00 2.44
5602 6337 3.081710 ACTACGGAGGGGAATTTTTGG 57.918 47.619 0.00 0.00 0.00 3.28
5603 6338 2.377531 ACTACGGAGGGGAATTTTTGGT 59.622 45.455 0.00 0.00 0.00 3.67
5604 6339 1.627864 ACGGAGGGGAATTTTTGGTG 58.372 50.000 0.00 0.00 0.00 4.17
5605 6340 1.133294 ACGGAGGGGAATTTTTGGTGT 60.133 47.619 0.00 0.00 0.00 4.16
5606 6341 2.108601 ACGGAGGGGAATTTTTGGTGTA 59.891 45.455 0.00 0.00 0.00 2.90
5607 6342 3.245479 ACGGAGGGGAATTTTTGGTGTAT 60.245 43.478 0.00 0.00 0.00 2.29
5608 6343 3.130340 CGGAGGGGAATTTTTGGTGTATG 59.870 47.826 0.00 0.00 0.00 2.39
5609 6344 3.450817 GGAGGGGAATTTTTGGTGTATGG 59.549 47.826 0.00 0.00 0.00 2.74
5610 6345 3.449918 AGGGGAATTTTTGGTGTATGGG 58.550 45.455 0.00 0.00 0.00 4.00
5611 6346 3.078305 AGGGGAATTTTTGGTGTATGGGA 59.922 43.478 0.00 0.00 0.00 4.37
5612 6347 3.196901 GGGGAATTTTTGGTGTATGGGAC 59.803 47.826 0.00 0.00 0.00 4.46
5613 6348 3.196901 GGGAATTTTTGGTGTATGGGACC 59.803 47.826 0.00 0.00 0.00 4.46
5614 6349 3.196901 GGAATTTTTGGTGTATGGGACCC 59.803 47.826 2.45 2.45 31.84 4.46
5615 6350 3.845109 ATTTTTGGTGTATGGGACCCT 57.155 42.857 13.00 0.00 31.84 4.34
5616 6351 4.957606 ATTTTTGGTGTATGGGACCCTA 57.042 40.909 13.00 0.00 31.84 3.53
5617 6352 4.957606 TTTTTGGTGTATGGGACCCTAT 57.042 40.909 13.00 6.39 31.84 2.57
5618 6353 6.599986 ATTTTTGGTGTATGGGACCCTATA 57.400 37.500 13.00 5.38 31.84 1.31
5619 6354 6.599986 TTTTTGGTGTATGGGACCCTATAT 57.400 37.500 13.00 0.00 31.84 0.86
5620 6355 5.576563 TTTGGTGTATGGGACCCTATATG 57.423 43.478 13.00 0.00 31.84 1.78
5621 6356 3.526899 TGGTGTATGGGACCCTATATGG 58.473 50.000 13.00 0.00 31.84 2.74
5659 6394 9.244799 AGTAATTCAACAAAAGGTCGAAAATTC 57.755 29.630 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.798501 CGCAGGTGTTACCGCATCG 61.799 63.158 12.63 3.86 44.90 3.84
2 3 3.089784 CGCAGGTGTTACCGCATC 58.910 61.111 12.63 0.00 44.90 3.91
20 21 0.890683 CAAGAAGGGATGGTGGCAAC 59.109 55.000 0.00 0.00 0.00 4.17
21 22 0.251742 CCAAGAAGGGATGGTGGCAA 60.252 55.000 0.00 0.00 31.84 4.52
22 23 1.139498 TCCAAGAAGGGATGGTGGCA 61.139 55.000 0.00 0.00 37.94 4.92
23 24 0.394899 CTCCAAGAAGGGATGGTGGC 60.395 60.000 0.00 0.00 37.94 5.01
24 25 0.257039 CCTCCAAGAAGGGATGGTGG 59.743 60.000 0.00 0.00 42.19 4.61
25 26 3.890527 CCTCCAAGAAGGGATGGTG 57.109 57.895 0.00 0.00 37.94 4.17
32 33 1.192146 TCCGACACCCTCCAAGAAGG 61.192 60.000 0.00 0.00 39.47 3.46
33 34 0.905357 ATCCGACACCCTCCAAGAAG 59.095 55.000 0.00 0.00 0.00 2.85
34 35 0.613260 CATCCGACACCCTCCAAGAA 59.387 55.000 0.00 0.00 0.00 2.52
35 36 0.544357 ACATCCGACACCCTCCAAGA 60.544 55.000 0.00 0.00 0.00 3.02
36 37 1.191535 TACATCCGACACCCTCCAAG 58.808 55.000 0.00 0.00 0.00 3.61
37 38 1.760613 GATACATCCGACACCCTCCAA 59.239 52.381 0.00 0.00 0.00 3.53
38 39 1.410004 GATACATCCGACACCCTCCA 58.590 55.000 0.00 0.00 0.00 3.86
39 40 0.680061 GGATACATCCGACACCCTCC 59.320 60.000 0.00 0.00 37.19 4.30
53 54 4.709250 GAAAGGAAGTGAGGGATGGATAC 58.291 47.826 0.00 0.00 0.00 2.24
54 55 3.388024 CGAAAGGAAGTGAGGGATGGATA 59.612 47.826 0.00 0.00 0.00 2.59
55 56 2.171448 CGAAAGGAAGTGAGGGATGGAT 59.829 50.000 0.00 0.00 0.00 3.41
56 57 1.555075 CGAAAGGAAGTGAGGGATGGA 59.445 52.381 0.00 0.00 0.00 3.41
57 58 2.014068 GCGAAAGGAAGTGAGGGATGG 61.014 57.143 0.00 0.00 0.00 3.51
58 59 1.373570 GCGAAAGGAAGTGAGGGATG 58.626 55.000 0.00 0.00 0.00 3.51
59 60 0.108138 CGCGAAAGGAAGTGAGGGAT 60.108 55.000 0.00 0.00 0.00 3.85
60 61 1.292223 CGCGAAAGGAAGTGAGGGA 59.708 57.895 0.00 0.00 0.00 4.20
61 62 1.004918 ACGCGAAAGGAAGTGAGGG 60.005 57.895 15.93 0.00 0.00 4.30
62 63 1.901650 GCACGCGAAAGGAAGTGAGG 61.902 60.000 15.93 0.00 36.79 3.86
63 64 1.493311 GCACGCGAAAGGAAGTGAG 59.507 57.895 15.93 0.00 36.79 3.51
64 65 1.959226 GGCACGCGAAAGGAAGTGA 60.959 57.895 15.93 0.00 36.79 3.41
65 66 2.556287 GGCACGCGAAAGGAAGTG 59.444 61.111 15.93 0.00 37.63 3.16
85 86 0.248565 GACGTGTCCTAGGGTTTCCC 59.751 60.000 9.46 0.00 45.90 3.97
86 87 0.248565 GGACGTGTCCTAGGGTTTCC 59.751 60.000 9.46 4.61 46.16 3.13
87 88 3.828657 GGACGTGTCCTAGGGTTTC 57.171 57.895 9.46 0.00 46.16 2.78
109 110 2.429236 AAGTCGACGACGCTGCTG 60.429 61.111 21.44 0.00 37.67 4.41
110 111 2.126812 GAAGTCGACGACGCTGCT 60.127 61.111 21.44 1.42 37.67 4.24
111 112 3.524759 CGAAGTCGACGACGCTGC 61.525 66.667 21.44 11.36 43.02 5.25
112 113 3.524759 GCGAAGTCGACGACGCTG 61.525 66.667 35.40 15.42 46.06 5.18
115 116 2.215604 GGATGCGAAGTCGACGACG 61.216 63.158 24.66 24.66 43.02 5.12
116 117 1.872679 GGGATGCGAAGTCGACGAC 60.873 63.158 20.25 20.25 43.02 4.34
117 118 1.592400 AAGGGATGCGAAGTCGACGA 61.592 55.000 10.46 0.00 43.02 4.20
118 119 1.153823 AAGGGATGCGAAGTCGACG 60.154 57.895 10.46 0.00 43.02 5.12
119 120 1.696832 GCAAGGGATGCGAAGTCGAC 61.697 60.000 7.70 7.70 46.87 4.20
120 121 1.447838 GCAAGGGATGCGAAGTCGA 60.448 57.895 4.59 0.00 46.87 4.20
121 122 3.093278 GCAAGGGATGCGAAGTCG 58.907 61.111 0.00 0.00 46.87 4.18
129 130 1.751927 GCACCTCCAGCAAGGGATG 60.752 63.158 5.01 0.00 41.04 3.51
130 131 1.927527 AGCACCTCCAGCAAGGGAT 60.928 57.895 5.01 0.00 41.04 3.85
131 132 2.530151 AGCACCTCCAGCAAGGGA 60.530 61.111 5.01 0.00 41.04 4.20
132 133 2.360852 CAGCACCTCCAGCAAGGG 60.361 66.667 5.01 0.00 41.04 3.95
133 134 3.060615 GCAGCACCTCCAGCAAGG 61.061 66.667 0.00 0.00 42.55 3.61
134 135 1.602888 AAGCAGCACCTCCAGCAAG 60.603 57.895 0.00 0.00 0.00 4.01
135 136 1.900016 CAAGCAGCACCTCCAGCAA 60.900 57.895 0.00 0.00 0.00 3.91
136 137 2.281970 CAAGCAGCACCTCCAGCA 60.282 61.111 0.00 0.00 0.00 4.41
137 138 2.469465 TACCAAGCAGCACCTCCAGC 62.469 60.000 0.00 0.00 0.00 4.85
138 139 0.674895 GTACCAAGCAGCACCTCCAG 60.675 60.000 0.00 0.00 0.00 3.86
139 140 1.374947 GTACCAAGCAGCACCTCCA 59.625 57.895 0.00 0.00 0.00 3.86
140 141 1.741770 CGTACCAAGCAGCACCTCC 60.742 63.158 0.00 0.00 0.00 4.30
141 142 2.391389 GCGTACCAAGCAGCACCTC 61.391 63.158 0.00 0.00 34.19 3.85
142 143 2.358737 GCGTACCAAGCAGCACCT 60.359 61.111 0.00 0.00 34.19 4.00
143 144 3.788766 CGCGTACCAAGCAGCACC 61.789 66.667 0.00 0.00 34.19 5.01
144 145 3.788766 CCGCGTACCAAGCAGCAC 61.789 66.667 4.92 0.00 34.19 4.40
164 165 3.775654 CAGACCCAGGCTCCGACC 61.776 72.222 0.00 0.00 0.00 4.79
165 166 2.997897 ACAGACCCAGGCTCCGAC 60.998 66.667 0.00 0.00 0.00 4.79
166 167 2.997315 CACAGACCCAGGCTCCGA 60.997 66.667 0.00 0.00 0.00 4.55
167 168 4.087892 CCACAGACCCAGGCTCCG 62.088 72.222 0.00 0.00 0.00 4.63
168 169 2.930562 ACCACAGACCCAGGCTCC 60.931 66.667 0.00 0.00 0.00 4.70
169 170 2.348998 CACCACAGACCCAGGCTC 59.651 66.667 0.00 0.00 0.00 4.70
170 171 3.252284 CCACCACAGACCCAGGCT 61.252 66.667 0.00 0.00 0.00 4.58
171 172 4.351054 CCCACCACAGACCCAGGC 62.351 72.222 0.00 0.00 0.00 4.85
172 173 2.854032 ACCCACCACAGACCCAGG 60.854 66.667 0.00 0.00 0.00 4.45
173 174 1.705002 TTGACCCACCACAGACCCAG 61.705 60.000 0.00 0.00 0.00 4.45
174 175 1.065410 ATTGACCCACCACAGACCCA 61.065 55.000 0.00 0.00 0.00 4.51
175 176 0.112412 AATTGACCCACCACAGACCC 59.888 55.000 0.00 0.00 0.00 4.46
176 177 1.886542 GAAATTGACCCACCACAGACC 59.113 52.381 0.00 0.00 0.00 3.85
177 178 1.535462 CGAAATTGACCCACCACAGAC 59.465 52.381 0.00 0.00 0.00 3.51
178 179 1.544537 CCGAAATTGACCCACCACAGA 60.545 52.381 0.00 0.00 0.00 3.41
179 180 0.881118 CCGAAATTGACCCACCACAG 59.119 55.000 0.00 0.00 0.00 3.66
180 181 0.474614 TCCGAAATTGACCCACCACA 59.525 50.000 0.00 0.00 0.00 4.17
181 182 1.165270 CTCCGAAATTGACCCACCAC 58.835 55.000 0.00 0.00 0.00 4.16
182 183 0.037590 CCTCCGAAATTGACCCACCA 59.962 55.000 0.00 0.00 0.00 4.17
183 184 0.679960 CCCTCCGAAATTGACCCACC 60.680 60.000 0.00 0.00 0.00 4.61
184 185 1.313091 GCCCTCCGAAATTGACCCAC 61.313 60.000 0.00 0.00 0.00 4.61
185 186 1.001393 GCCCTCCGAAATTGACCCA 60.001 57.895 0.00 0.00 0.00 4.51
186 187 2.112815 CGCCCTCCGAAATTGACCC 61.113 63.158 0.00 0.00 40.02 4.46
187 188 2.761195 GCGCCCTCCGAAATTGACC 61.761 63.158 0.00 0.00 40.02 4.02
188 189 1.982073 CTGCGCCCTCCGAAATTGAC 61.982 60.000 4.18 0.00 40.02 3.18
189 190 1.745115 CTGCGCCCTCCGAAATTGA 60.745 57.895 4.18 0.00 40.02 2.57
190 191 2.793946 CTGCGCCCTCCGAAATTG 59.206 61.111 4.18 0.00 40.02 2.32
191 192 3.134127 GCTGCGCCCTCCGAAATT 61.134 61.111 4.18 0.00 40.02 1.82
192 193 4.408821 TGCTGCGCCCTCCGAAAT 62.409 61.111 4.18 0.00 40.02 2.17
205 206 2.821366 GATGACCCGCCACTGCTG 60.821 66.667 0.00 0.00 34.43 4.41
206 207 4.101448 GGATGACCCGCCACTGCT 62.101 66.667 0.00 0.00 34.43 4.24
215 216 2.746277 ACAAAGCGCGGATGACCC 60.746 61.111 8.83 0.00 0.00 4.46
216 217 2.785258 GACAAAGCGCGGATGACC 59.215 61.111 8.83 0.00 0.00 4.02
217 218 2.014093 CTCGACAAAGCGCGGATGAC 62.014 60.000 8.83 9.18 0.00 3.06
218 219 1.805539 CTCGACAAAGCGCGGATGA 60.806 57.895 8.83 3.95 0.00 2.92
219 220 2.697425 CTCGACAAAGCGCGGATG 59.303 61.111 8.83 5.05 0.00 3.51
220 221 3.188786 GCTCGACAAAGCGCGGAT 61.189 61.111 8.83 0.00 31.56 4.18
226 227 2.607892 AACGGCAGCTCGACAAAGC 61.608 57.895 9.87 0.00 42.82 3.51
227 228 1.205064 CAACGGCAGCTCGACAAAG 59.795 57.895 9.87 0.00 0.00 2.77
228 229 1.092921 AACAACGGCAGCTCGACAAA 61.093 50.000 9.87 0.00 0.00 2.83
229 230 1.522806 AACAACGGCAGCTCGACAA 60.523 52.632 9.87 0.00 0.00 3.18
230 231 2.108157 AACAACGGCAGCTCGACA 59.892 55.556 9.87 0.00 0.00 4.35
231 232 2.551270 CAACAACGGCAGCTCGAC 59.449 61.111 9.87 0.00 0.00 4.20
232 233 2.664851 CCAACAACGGCAGCTCGA 60.665 61.111 9.87 0.00 0.00 4.04
259 260 9.423061 CCAAAAGAAAGAGAAAGAACAAAGAAA 57.577 29.630 0.00 0.00 0.00 2.52
260 261 8.034804 CCCAAAAGAAAGAGAAAGAACAAAGAA 58.965 33.333 0.00 0.00 0.00 2.52
261 262 7.547227 CCCAAAAGAAAGAGAAAGAACAAAGA 58.453 34.615 0.00 0.00 0.00 2.52
262 263 6.256539 GCCCAAAAGAAAGAGAAAGAACAAAG 59.743 38.462 0.00 0.00 0.00 2.77
263 264 6.070824 AGCCCAAAAGAAAGAGAAAGAACAAA 60.071 34.615 0.00 0.00 0.00 2.83
264 265 5.422012 AGCCCAAAAGAAAGAGAAAGAACAA 59.578 36.000 0.00 0.00 0.00 2.83
265 266 4.956075 AGCCCAAAAGAAAGAGAAAGAACA 59.044 37.500 0.00 0.00 0.00 3.18
266 267 5.521906 AGCCCAAAAGAAAGAGAAAGAAC 57.478 39.130 0.00 0.00 0.00 3.01
267 268 5.422012 ACAAGCCCAAAAGAAAGAGAAAGAA 59.578 36.000 0.00 0.00 0.00 2.52
268 269 4.956075 ACAAGCCCAAAAGAAAGAGAAAGA 59.044 37.500 0.00 0.00 0.00 2.52
269 270 5.268118 ACAAGCCCAAAAGAAAGAGAAAG 57.732 39.130 0.00 0.00 0.00 2.62
270 271 5.046663 ACAACAAGCCCAAAAGAAAGAGAAA 60.047 36.000 0.00 0.00 0.00 2.52
271 272 4.466015 ACAACAAGCCCAAAAGAAAGAGAA 59.534 37.500 0.00 0.00 0.00 2.87
272 273 4.023291 ACAACAAGCCCAAAAGAAAGAGA 58.977 39.130 0.00 0.00 0.00 3.10
273 274 4.114794 CACAACAAGCCCAAAAGAAAGAG 58.885 43.478 0.00 0.00 0.00 2.85
274 275 3.678529 GCACAACAAGCCCAAAAGAAAGA 60.679 43.478 0.00 0.00 0.00 2.52
275 276 2.609002 GCACAACAAGCCCAAAAGAAAG 59.391 45.455 0.00 0.00 0.00 2.62
276 277 2.235898 AGCACAACAAGCCCAAAAGAAA 59.764 40.909 0.00 0.00 0.00 2.52
277 278 1.830477 AGCACAACAAGCCCAAAAGAA 59.170 42.857 0.00 0.00 0.00 2.52
278 279 1.484038 AGCACAACAAGCCCAAAAGA 58.516 45.000 0.00 0.00 0.00 2.52
279 280 2.159057 AGAAGCACAACAAGCCCAAAAG 60.159 45.455 0.00 0.00 0.00 2.27
280 281 1.830477 AGAAGCACAACAAGCCCAAAA 59.170 42.857 0.00 0.00 0.00 2.44
281 282 1.408702 GAGAAGCACAACAAGCCCAAA 59.591 47.619 0.00 0.00 0.00 3.28
282 283 1.032014 GAGAAGCACAACAAGCCCAA 58.968 50.000 0.00 0.00 0.00 4.12
283 284 1.165907 CGAGAAGCACAACAAGCCCA 61.166 55.000 0.00 0.00 0.00 5.36
284 285 1.576421 CGAGAAGCACAACAAGCCC 59.424 57.895 0.00 0.00 0.00 5.19
295 296 4.443266 AGTGCTCGGGCGAGAAGC 62.443 66.667 1.14 0.00 44.53 3.86
296 297 2.202676 GAGTGCTCGGGCGAGAAG 60.203 66.667 1.14 0.00 44.53 2.85
297 298 3.760035 GGAGTGCTCGGGCGAGAA 61.760 66.667 1.14 0.00 44.53 2.87
298 299 4.742649 AGGAGTGCTCGGGCGAGA 62.743 66.667 1.14 0.00 44.53 4.04
299 300 4.200283 GAGGAGTGCTCGGGCGAG 62.200 72.222 1.14 0.00 44.56 5.03
300 301 4.742649 AGAGGAGTGCTCGGGCGA 62.743 66.667 1.14 0.00 42.25 5.54
301 302 4.504916 CAGAGGAGTGCTCGGGCG 62.505 72.222 1.14 0.00 42.25 6.13
302 303 1.395826 ATACAGAGGAGTGCTCGGGC 61.396 60.000 15.63 0.00 39.26 6.13
303 304 0.671251 GATACAGAGGAGTGCTCGGG 59.329 60.000 15.63 10.19 0.00 5.14
304 305 0.309302 CGATACAGAGGAGTGCTCGG 59.691 60.000 10.15 10.15 0.00 4.63
305 306 0.309302 CCGATACAGAGGAGTGCTCG 59.691 60.000 5.96 4.17 0.00 5.03
306 307 1.066303 CACCGATACAGAGGAGTGCTC 59.934 57.143 2.93 2.93 0.00 4.26
307 308 1.107114 CACCGATACAGAGGAGTGCT 58.893 55.000 0.00 0.00 0.00 4.40
308 309 0.818296 ACACCGATACAGAGGAGTGC 59.182 55.000 0.00 0.00 30.32 4.40
309 310 2.417379 CCAACACCGATACAGAGGAGTG 60.417 54.545 0.00 0.00 31.85 3.51
310 311 1.825474 CCAACACCGATACAGAGGAGT 59.175 52.381 0.00 0.00 32.80 3.85
311 312 1.825474 ACCAACACCGATACAGAGGAG 59.175 52.381 0.00 0.00 0.00 3.69
312 313 1.933021 ACCAACACCGATACAGAGGA 58.067 50.000 0.00 0.00 0.00 3.71
313 314 2.346803 CAACCAACACCGATACAGAGG 58.653 52.381 0.00 0.00 0.00 3.69
314 315 1.732259 GCAACCAACACCGATACAGAG 59.268 52.381 0.00 0.00 0.00 3.35
315 316 1.346395 AGCAACCAACACCGATACAGA 59.654 47.619 0.00 0.00 0.00 3.41
316 317 1.808411 AGCAACCAACACCGATACAG 58.192 50.000 0.00 0.00 0.00 2.74
317 318 2.264005 AAGCAACCAACACCGATACA 57.736 45.000 0.00 0.00 0.00 2.29
318 319 2.292292 ACAAAGCAACCAACACCGATAC 59.708 45.455 0.00 0.00 0.00 2.24
319 320 2.577700 ACAAAGCAACCAACACCGATA 58.422 42.857 0.00 0.00 0.00 2.92
320 321 1.398692 ACAAAGCAACCAACACCGAT 58.601 45.000 0.00 0.00 0.00 4.18
321 322 2.039818 TACAAAGCAACCAACACCGA 57.960 45.000 0.00 0.00 0.00 4.69
322 323 2.853731 TTACAAAGCAACCAACACCG 57.146 45.000 0.00 0.00 0.00 4.94
323 324 5.189659 TGTATTACAAAGCAACCAACACC 57.810 39.130 0.00 0.00 0.00 4.16
335 336 7.256368 GGATTTTCCCCCACTTTGTATTACAAA 60.256 37.037 18.39 18.39 44.91 2.83
336 337 6.211785 GGATTTTCCCCCACTTTGTATTACAA 59.788 38.462 5.14 5.14 36.11 2.41
337 338 5.717654 GGATTTTCCCCCACTTTGTATTACA 59.282 40.000 0.00 0.00 0.00 2.41
338 339 5.955959 AGGATTTTCCCCCACTTTGTATTAC 59.044 40.000 0.00 0.00 37.19 1.89
339 340 6.160483 AGGATTTTCCCCCACTTTGTATTA 57.840 37.500 0.00 0.00 37.19 0.98
340 341 5.023514 AGGATTTTCCCCCACTTTGTATT 57.976 39.130 0.00 0.00 37.19 1.89
341 342 4.692523 AGGATTTTCCCCCACTTTGTAT 57.307 40.909 0.00 0.00 37.19 2.29
342 343 4.479156 AAGGATTTTCCCCCACTTTGTA 57.521 40.909 0.00 0.00 37.19 2.41
343 344 3.344535 AAGGATTTTCCCCCACTTTGT 57.655 42.857 0.00 0.00 37.19 2.83
356 357 6.374613 GGATCTGACTTACCGAAAAAGGATTT 59.625 38.462 0.00 0.00 42.41 2.17
357 358 5.880887 GGATCTGACTTACCGAAAAAGGATT 59.119 40.000 0.00 0.00 34.73 3.01
358 359 5.429130 GGATCTGACTTACCGAAAAAGGAT 58.571 41.667 0.00 0.00 34.73 3.24
359 360 4.619863 CGGATCTGACTTACCGAAAAAGGA 60.620 45.833 0.00 0.00 46.94 3.36
360 361 3.617263 CGGATCTGACTTACCGAAAAAGG 59.383 47.826 0.00 0.00 46.94 3.11
361 362 4.243270 ACGGATCTGACTTACCGAAAAAG 58.757 43.478 9.00 0.00 46.94 2.27
362 363 4.261578 ACGGATCTGACTTACCGAAAAA 57.738 40.909 9.00 0.00 46.94 1.94
363 364 3.947910 ACGGATCTGACTTACCGAAAA 57.052 42.857 9.00 0.00 46.94 2.29
364 365 3.947910 AACGGATCTGACTTACCGAAA 57.052 42.857 9.00 0.00 46.94 3.46
365 366 5.587388 AATAACGGATCTGACTTACCGAA 57.413 39.130 9.00 8.19 46.94 4.30
366 367 5.125900 TGAAATAACGGATCTGACTTACCGA 59.874 40.000 9.00 1.73 46.94 4.69
368 369 5.753921 CCTGAAATAACGGATCTGACTTACC 59.246 44.000 9.00 0.00 0.00 2.85
369 370 5.234543 GCCTGAAATAACGGATCTGACTTAC 59.765 44.000 9.00 0.00 0.00 2.34
370 371 5.357257 GCCTGAAATAACGGATCTGACTTA 58.643 41.667 9.00 0.00 0.00 2.24
371 372 4.192317 GCCTGAAATAACGGATCTGACTT 58.808 43.478 9.00 0.00 0.00 3.01
419 421 5.476945 ACCAGATTCCATTTTCAGTAACACC 59.523 40.000 0.00 0.00 0.00 4.16
471 473 4.156455 TGAAGCTTGGAGACTTGAAAGT 57.844 40.909 2.10 0.00 43.16 2.66
472 474 5.472820 AGAATGAAGCTTGGAGACTTGAAAG 59.527 40.000 2.10 0.00 0.00 2.62
473 475 5.240183 CAGAATGAAGCTTGGAGACTTGAAA 59.760 40.000 2.10 0.00 39.69 2.69
474 476 4.758674 CAGAATGAAGCTTGGAGACTTGAA 59.241 41.667 2.10 0.00 39.69 2.69
475 477 4.321718 CAGAATGAAGCTTGGAGACTTGA 58.678 43.478 2.10 0.00 39.69 3.02
476 478 3.119919 GCAGAATGAAGCTTGGAGACTTG 60.120 47.826 2.10 0.00 39.69 3.16
477 479 3.080319 GCAGAATGAAGCTTGGAGACTT 58.920 45.455 2.10 0.00 39.69 3.01
478 480 2.039480 TGCAGAATGAAGCTTGGAGACT 59.961 45.455 2.10 0.00 39.69 3.24
479 481 2.430465 TGCAGAATGAAGCTTGGAGAC 58.570 47.619 2.10 0.00 39.69 3.36
480 482 2.865119 TGCAGAATGAAGCTTGGAGA 57.135 45.000 2.10 0.00 39.69 3.71
481 483 2.031807 CGATGCAGAATGAAGCTTGGAG 59.968 50.000 2.10 0.00 39.69 3.86
482 484 2.011947 CGATGCAGAATGAAGCTTGGA 58.988 47.619 2.10 0.00 39.69 3.53
483 485 1.533338 GCGATGCAGAATGAAGCTTGG 60.533 52.381 2.10 0.00 39.69 3.61
484 486 1.131693 TGCGATGCAGAATGAAGCTTG 59.868 47.619 2.10 0.00 39.69 4.01
485 487 1.456296 TGCGATGCAGAATGAAGCTT 58.544 45.000 0.00 0.00 39.69 3.74
486 488 1.400846 CTTGCGATGCAGAATGAAGCT 59.599 47.619 0.00 0.00 40.61 3.74
487 489 1.131883 ACTTGCGATGCAGAATGAAGC 59.868 47.619 0.00 0.00 40.61 3.86
488 490 3.482722 AACTTGCGATGCAGAATGAAG 57.517 42.857 0.00 0.00 40.61 3.02
489 491 3.252944 TGAAACTTGCGATGCAGAATGAA 59.747 39.130 0.00 0.00 40.61 2.57
490 492 2.813172 TGAAACTTGCGATGCAGAATGA 59.187 40.909 0.00 0.00 40.61 2.57
512 514 2.174360 GGCTTTGCCTTGGAGAATCTT 58.826 47.619 0.73 0.00 46.69 2.40
513 515 1.844687 GGCTTTGCCTTGGAGAATCT 58.155 50.000 0.73 0.00 46.69 2.40
551 553 0.247736 GGTGACTTCGTGAGCCATCT 59.752 55.000 0.00 0.00 0.00 2.90
627 629 8.368668 GGCTGTATAATAAAGTACTGATCCACT 58.631 37.037 0.00 0.00 0.00 4.00
628 630 8.148351 TGGCTGTATAATAAAGTACTGATCCAC 58.852 37.037 0.00 0.00 0.00 4.02
629 631 8.257602 TGGCTGTATAATAAAGTACTGATCCA 57.742 34.615 0.00 0.00 0.00 3.41
630 632 9.209175 CTTGGCTGTATAATAAAGTACTGATCC 57.791 37.037 0.00 0.00 0.00 3.36
712 716 5.046591 CCCGCTACTTTCATATCCATTCCTA 60.047 44.000 0.00 0.00 0.00 2.94
714 718 4.003648 CCCGCTACTTTCATATCCATTCC 58.996 47.826 0.00 0.00 0.00 3.01
769 776 7.390440 TGGATTGAGACGTTTAATTCTGTGATT 59.610 33.333 0.00 0.00 0.00 2.57
778 785 5.878669 GGTAAGGTGGATTGAGACGTTTAAT 59.121 40.000 0.00 0.00 0.00 1.40
780 787 4.283978 TGGTAAGGTGGATTGAGACGTTTA 59.716 41.667 0.00 0.00 0.00 2.01
834 844 1.356270 CGTGCAGCACAAGAAGCAA 59.644 52.632 25.19 0.00 38.91 3.91
895 906 0.388134 GCGTGCTAGTCGTCCTTTCA 60.388 55.000 10.14 0.00 0.00 2.69
1122 1162 1.137872 AGAGCATGGAGATCGGTGTTC 59.862 52.381 0.00 0.00 37.82 3.18
1284 1333 3.641434 ATCTGTCCATTGAGGTCAAGG 57.359 47.619 0.00 0.00 39.47 3.61
1627 1676 7.013083 CAGACTATTGCTAGCAAGATCCAAAAT 59.987 37.037 31.88 16.30 39.47 1.82
1988 2191 6.842437 AATTATTATCTGCTAGCGAGAGGA 57.158 37.500 10.77 7.32 0.00 3.71
2641 2845 4.621068 TGAACAAGCTCAAGACAAACAG 57.379 40.909 0.00 0.00 0.00 3.16
2683 2887 3.751698 AGATTACCAACAGAAAGCGGAAC 59.248 43.478 0.00 0.00 0.00 3.62
2752 2956 2.968574 CTGCTAAAGCTCCTGGGATAGA 59.031 50.000 3.26 0.00 42.66 1.98
2851 3055 0.318762 AGACACTGGGAAAGCGAGAC 59.681 55.000 0.00 0.00 0.00 3.36
3195 3399 4.461781 CCATTCTGAAATATCCCATCTGCC 59.538 45.833 0.00 0.00 0.00 4.85
3219 3423 3.573967 TCCCTTGAATGAAAACCTTGCTC 59.426 43.478 0.00 0.00 0.00 4.26
3272 3476 2.147958 CATTGCAAAATGGCAGCTGTT 58.852 42.857 16.64 0.00 45.88 3.16
3349 3559 6.627087 TGATAACAGGACCAAAGAGAGAAT 57.373 37.500 0.00 0.00 0.00 2.40
3537 3747 7.554118 TCATGTTCTTCAGATTCAATTCTACCC 59.446 37.037 0.00 0.00 0.00 3.69
3633 3846 2.540101 CCTGTGACGAGTGTTTCTCAAC 59.460 50.000 0.00 0.00 42.88 3.18
3773 3986 1.221840 CTCCGACCAACCTCATGGG 59.778 63.158 0.00 0.00 45.18 4.00
3788 4004 2.162408 CCGAAACTCAATGGCTTTCTCC 59.838 50.000 0.00 0.00 0.00 3.71
3794 4010 2.851263 TGTACCGAAACTCAATGGCT 57.149 45.000 0.00 0.00 0.00 4.75
3855 4071 1.818060 GGCACACATTGGTTATGCAGA 59.182 47.619 0.00 0.00 37.81 4.26
3858 4074 1.134946 GGAGGCACACATTGGTTATGC 59.865 52.381 0.00 0.00 37.81 3.14
4005 4230 0.107459 CTCTTGGCCCCACTAAGCTC 60.107 60.000 0.00 0.00 36.82 4.09
4616 5006 3.057946 CAGGCTAGGAAAAGCTTCACAAC 60.058 47.826 0.00 0.00 42.37 3.32
4686 5078 2.026636 GGTAGGGTTTACAGTGATGCCA 60.027 50.000 0.00 0.00 0.00 4.92
4778 5419 0.255890 TTCCATGGAGCTAGGTTGGC 59.744 55.000 15.53 0.00 0.00 4.52
4791 5432 5.125900 TCAAGGCTGAACACATTATTCCATG 59.874 40.000 0.00 0.00 0.00 3.66
4801 5442 2.057137 AAGCTTCAAGGCTGAACACA 57.943 45.000 0.00 0.00 42.24 3.72
4802 5443 2.287849 GGAAAGCTTCAAGGCTGAACAC 60.288 50.000 0.00 0.00 42.24 3.32
4979 5674 3.121738 ACTGCCGTGCTACTTTTAACT 57.878 42.857 0.00 0.00 0.00 2.24
5020 5715 3.896272 TGCATGCCTGGCAATATATGAAA 59.104 39.130 27.24 8.07 43.62 2.69
5021 5716 3.498334 TGCATGCCTGGCAATATATGAA 58.502 40.909 27.24 10.88 43.62 2.57
5022 5717 3.157750 TGCATGCCTGGCAATATATGA 57.842 42.857 27.24 6.39 43.62 2.15
5023 5718 5.784578 ATATGCATGCCTGGCAATATATG 57.215 39.130 27.24 19.46 45.60 1.78
5024 5719 8.486942 AAATATATGCATGCCTGGCAATATAT 57.513 30.769 27.24 25.88 45.60 0.86
5025 5720 7.781219 AGAAATATATGCATGCCTGGCAATATA 59.219 33.333 27.24 24.96 45.60 0.86
5026 5721 6.610020 AGAAATATATGCATGCCTGGCAATAT 59.390 34.615 27.24 23.75 45.60 1.28
5027 5722 5.953548 AGAAATATATGCATGCCTGGCAATA 59.046 36.000 27.24 18.78 45.60 1.90
5028 5723 4.775780 AGAAATATATGCATGCCTGGCAAT 59.224 37.500 27.24 17.12 45.60 3.56
5029 5724 4.021807 CAGAAATATATGCATGCCTGGCAA 60.022 41.667 27.24 10.10 45.60 4.52
5030 5725 3.508402 CAGAAATATATGCATGCCTGGCA 59.492 43.478 25.65 25.65 46.66 4.92
5031 5726 3.119245 CCAGAAATATATGCATGCCTGGC 60.119 47.826 16.68 12.87 34.34 4.85
5032 5727 4.084287 ACCAGAAATATATGCATGCCTGG 58.916 43.478 24.87 24.87 43.94 4.45
5033 5728 5.717078 AACCAGAAATATATGCATGCCTG 57.283 39.130 16.68 11.93 0.00 4.85
5034 5729 6.736110 AAAACCAGAAATATATGCATGCCT 57.264 33.333 16.68 8.18 0.00 4.75
5035 5730 8.885494 TTAAAAACCAGAAATATATGCATGCC 57.115 30.769 16.68 0.00 0.00 4.40
5063 5759 2.427095 GGCGGGCTTCAATATTTCTGTT 59.573 45.455 0.00 0.00 0.00 3.16
5073 5769 2.325484 TCTATAGATGGCGGGCTTCAA 58.675 47.619 17.65 4.26 0.00 2.69
5149 5850 3.751246 CCATGCCACACCGCCTTG 61.751 66.667 0.00 0.00 0.00 3.61
5314 6045 3.660865 GCCCCTTTGTACATATAGGTCG 58.339 50.000 14.55 8.03 0.00 4.79
5320 6051 1.133915 CCACCGCCCCTTTGTACATAT 60.134 52.381 0.00 0.00 0.00 1.78
5321 6052 0.253610 CCACCGCCCCTTTGTACATA 59.746 55.000 0.00 0.00 0.00 2.29
5361 6096 4.509580 AACGCCCACCACCCGTTT 62.510 61.111 0.00 0.00 41.81 3.60
5365 6100 3.061848 CATGAACGCCCACCACCC 61.062 66.667 0.00 0.00 0.00 4.61
5526 6261 4.163078 TCTTCAATCCTGAATCCTGACCTC 59.837 45.833 0.00 0.00 40.78 3.85
5536 6271 3.092301 TCTCGCTCTCTTCAATCCTGAA 58.908 45.455 0.00 0.00 39.30 3.02
5550 6285 2.610727 GCATATTACCACCCTCTCGCTC 60.611 54.545 0.00 0.00 0.00 5.03
5587 6322 3.450817 CCATACACCAAAAATTCCCCTCC 59.549 47.826 0.00 0.00 0.00 4.30
5588 6323 3.450817 CCCATACACCAAAAATTCCCCTC 59.549 47.826 0.00 0.00 0.00 4.30
5589 6324 3.078305 TCCCATACACCAAAAATTCCCCT 59.922 43.478 0.00 0.00 0.00 4.79
5590 6325 3.196901 GTCCCATACACCAAAAATTCCCC 59.803 47.826 0.00 0.00 0.00 4.81
5591 6326 3.196901 GGTCCCATACACCAAAAATTCCC 59.803 47.826 0.00 0.00 33.63 3.97
5592 6327 3.196901 GGGTCCCATACACCAAAAATTCC 59.803 47.826 1.78 0.00 35.35 3.01
5593 6328 4.093743 AGGGTCCCATACACCAAAAATTC 58.906 43.478 11.55 0.00 35.35 2.17
5594 6329 4.140575 AGGGTCCCATACACCAAAAATT 57.859 40.909 11.55 0.00 35.35 1.82
5595 6330 3.845109 AGGGTCCCATACACCAAAAAT 57.155 42.857 11.55 0.00 35.35 1.82
5596 6331 4.957606 ATAGGGTCCCATACACCAAAAA 57.042 40.909 11.55 0.00 35.35 1.94
5597 6332 5.163034 CCATATAGGGTCCCATACACCAAAA 60.163 44.000 11.55 0.00 35.35 2.44
5598 6333 4.352595 CCATATAGGGTCCCATACACCAAA 59.647 45.833 11.55 0.00 35.35 3.28
5599 6334 3.913799 CCATATAGGGTCCCATACACCAA 59.086 47.826 11.55 0.00 35.35 3.67
5600 6335 3.526899 CCATATAGGGTCCCATACACCA 58.473 50.000 11.55 0.00 35.35 4.17
5633 6368 9.244799 GAATTTTCGACCTTTTGTTGAATTACT 57.755 29.630 0.00 0.00 44.89 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.